CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 82 & Codon = gCt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF7a	82	V82A		nonsyn	gTt	gCt	2596355	2596239	0.999955	27637-27639

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF7a	82	V82A	gTt	gCt	2596239	2596355	All	0.496561
ORF7a	82	V82A	gTt	gCt	611892	611908	AY.4	0.952363
ORF7a	82	V82A	gTt	gCt	256314	256329	B.1.617.2	0.965128
ORF7a	82	V82A	gTt	gCt	213858	213869	AY.43	0.94749
ORF7a	82	V82A	gTt	gCt	157636	157641	AY.25	0.948152
ORF7a	82	V82A	gTt	gCt	151829	151831	AY.44	0.924147
ORF7a	82	V82A	gTt	gCt	151148	151151	AY.103	0.938487
ORF7a	82	V82A	gTt	gCt	94602	94609	AY.3	0.940948
ORF7a	82	V82A	gTt	gCt	63165	63166	AY.29	0.996341
ORF7a	82	V82A	gTt	gCt	45197	45197	AY.4.2	0.980263
ORF7a	82	V82A	gTt	gCt	44963	44963	AY.5	0.92845
ORF7a	82	V82A	gTt	gCt	37398	37398	AY.102	0.991569
ORF7a	82	V82A	gTt	gCt	33125	33125	AY.26	0.937774
ORF7a	82	V82A	gTt	gCt	30285	30285	AY.47	0.94202
ORF7a	82	V82A	gTt	gCt	26515	26518	AY.119	0.936198
ORF7a	82	V82A	gTt	gCt	26020	26022	AY.9.2	0.955704
ORF7a	82	V82A	gTt	gCt	25233	25236	AY.39	0.623545
ORF7a	82	V82A	gTt	gCt	24527	24527	AY.39.1	0.971597
ORF7a	82	V82A	gTt	gCt	24336	24338	AY.20	0.945822
ORF7a	82	V82A	gTt	gCt	23516	23516	AY.6	0.967179
ORF7a	82	V82A	gTt	gCt	23306	23308	AY.120	0.866491
ORF7a	82	V82A	gTt	gCt	23012	23012	AY.42	0.925775
ORF7a	82	V82A	gTt	gCt	19598	19599	AY.98.1	0.949148
ORF7a	82	V82A	gTt	gCt	18831	18832	AY.100	0.866351
ORF7a	82	V82A	gTt	gCt	16260	16276	AY.75	0.910924
ORF7a	82	V82A	gTt	gCt	15122	15122	AY.118	0.947375
ORF7a	82	V82A	gTt	gCt	14512	14512	AY.27	0.939227
ORF7a	82	V82A	gTt	gCt	14044	14044	AY.9	0.949304
ORF7a	82	V82A	gTt	gCt	13693	13697	AY.33	0.914391
ORF7a	82	V82A	gTt	gCt	13140	13140	AY.46.6	0.948805
ORF7a	82	V82A	gTt	gCt	12472	12472	AY.23	0.869917
ORF7a	82	V82A	gTt	gCt	11831	11831	AY.98	0.934592
ORF7a	82	V82A	gTt	gCt	11554	11554	AY.9.1	0.967348
ORF7a	82	V82A	gTt	gCt	11081	11081	AY.117	0.936528
ORF7a	82	V82A	gTt	gCt	10913	10913	AY.14	0.960482
ORF7a	82	V82A	gTt	gCt	10738	10738	AY.3.1	0.915509
ORF7a	82	V82A	gTt	gCt	10214	10214	AY.99.2	0.941296
ORF7a	82	V82A	gTt	gCt	9938	9938	AY.34	0.963638
ORF7a	82	V82A	gTt	gCt	9772	9772	AY.54	0.931732
ORF7a	82	V82A	gTt	gCt	9147	9147	AY.61	0.958403
ORF7a	82	V82A	gTt	gCt	8975	8977	AY.46	0.934117
ORF7a	82	V82A	gTt	gCt	8640	8640	AY.110	0.973631
ORF7a	82	V82A	gTt	gCt	8587	8587	AY.4.5	0.923036
ORF7a	82	V82A	gTt	gCt	8518	8518	AY.74	0.985082
ORF7a	82	V82A	gTt	gCt	8265	8265	AY.7.1	0.931478
ORF7a	82	V82A	gTt	gCt	7503	7503	AY.45	0.912996
ORF7a	82	V82A	gTt	gCt	6778	6778	B.1.617.1	0.874129
ORF7a	82	V82A	gTt	gCt	6594	6594	AY.113	0.938915
ORF7a	82	V82A	gTt	gCt	6305	6312	AY.36	0.934489
ORF7a	82	V82A	gTt	gCt	6144	6148	AY.121	0.831394
ORF7a	82	V82A	gTt	gCt	6067	6067	AY.4.2.1	0.903903
ORF7a	82	V82A	gTt	gCt	5895	5895	AY.13	0.94897
ORF7a	82	V82A	gTt	gCt	5813	5813	AY.46.4	0.956243
ORF7a	82	V82A	gTt	gCt	5336	5336	AY.69	0.99608
ORF7a	82	V82A	gTt	gCt	5229	5229	AY.111	0.957692
ORF7a	82	V82A	gTt	gCt	4899	4899	AY.46.5	0.972024
ORF7a	82	V82A	gTt	gCt	4831	4831	AY.7	0.946884
ORF7a	82	V82A	gTt	gCt	4645	4645	AY.70	0.968515
ORF7a	82	V82A	gTt	gCt	4614	4614	AY.75.1	0.831951
ORF7a	82	V82A	gTt	gCt	4520	4520	AY.29.1	0.996692
ORF7a	82	V82A	gTt	gCt	4146	4146	AY.35	0.966208
ORF7a	82	V82A	gTt	gCt	4015	4016	AY.114	0.927895
ORF7a	82	V82A	gTt	gCt	3600	3600	AY.93	0.983069
ORF7a	82	V82A	gTt	gCt	3386	3386	AY.5.4	0.936912
ORF7a	82	V82A	gTt	gCt	3291	3291	AY.41	0.967372
ORF7a	82	V82A	gTt	gCt	3258	3258	AY.53	0.936745
ORF7a	82	V82A	gTt	gCt	3233	3233	AY.116	0.927158
ORF7a	82	V82A	gTt	gCt	3017	3017	AY.116.1	0.939583
ORF7a	82	V82A	gTt	gCt	2969	2969	AY.68	0.812757
ORF7a	82	V82A	gTt	gCt	2957	2957	AY.92	0.849469
ORF7a	82	V82A	gTt	gCt	2879	2879	AY.37	0.909924
ORF7a	82	V82A	gTt	gCt	2868	2868	AY.120.1	0.920706
ORF7a	82	V82A	gTt	gCt	2798	2798	AY.5.3	0.943995
ORF7a	82	V82A	gTt	gCt	2789	2791	AY.106	0.934025
ORF7a	82	V82A	gTt	gCt	2671	2671	AY.2	0.951211
ORF7a	82	V82A	gTt	gCt	2529	2529	AY.63	0.978337
ORF7a	82	V82A	gTt	gCt	2488	2488	AY.12	0.786346
ORF7a	82	V82A	gTt	gCt	2422	2422	AY.1	0.958449
ORF7a	82	V82A	gTt	gCt	2388	2388	AY.23.1	0.996661
ORF7a	82	V82A	gTt	gCt	2383	2383	AY.30	0.943015
ORF7a	82	V82A	gTt	gCt	2364	2364	AY.4.4	0.967267
ORF7a	82	V82A	gTt	gCt	2350	2351	AY.16	0.892179
ORF7a	82	V82A	gTt	gCt	2202	2202	AY.62	0.959477
ORF7a	82	V82A	gTt	gCt	2188	2188	AY.24	0.943103
ORF7a	82	V82A	gTt	gCt	2149	2149	AY.94	0.951306
ORF7a	82	V82A	gTt	gCt	2143	2143	AY.85	0.915421
ORF7a	82	V82A	gTt	gCt	1971	1971	AY.107	0.918453
ORF7a	82	V82A	gTt	gCt	1922	1922	AY.120.2.1	0.957648
ORF7a	82	V82A	gTt	gCt	1917	1917	AY.34.1	0.977562
ORF7a	82	V82A	gTt	gCt	1876	1876	AY.101	0.920059
ORF7a	82	V82A	gTt	gCt	1873	1873	AY.38	0.935097
ORF7a	82	V82A	gTt	gCt	1857	1857	AY.67	0.862117
ORF7a	82	V82A	gTt	gCt	1846	1846	AY.84	0.807524
ORF7a	82	V82A	gTt	gCt	1816	1816	AY.71	0.862708
ORF7a	82	V82A	gTt	gCt	1793	1793	AY.10	0.950185
ORF7a	82	V82A	gTt	gCt	1744	1744	AY.48	0.811163
ORF7a	82	V82A	gTt	gCt	1741	1741	AY.32	0.92705
ORF7a	82	V82A	gTt	gCt	1726	1726	AY.59	0.914195
ORF7a	82	V82A	gTt	gCt	1620	1620	AY.8	0.981818
ORF7a	82	V82A	gTt	gCt	1604	1604	AY.7.2	0.897092
ORF7a	82	V82A	gTt	gCt	1555	1556	AY.64	0.925595
ORF7a	82	V82A	gTt	gCt	1504	1504	AY.46.2	0.955527
ORF7a	82	V82A	gTt	gCt	1500	1502	AY.57	0.984252
ORF7a	82	V82A	gTt	gCt	1474	1474	AY.73	0.980705
ORF7a	82	V82A	gTt	gCt	1452	1452	AY.105	0.933762
ORF7a	82	V82A	gTt	gCt	1444	1444	AY.65	0.769723
ORF7a	82	V82A	gTt	gCt	1424	1424	AY.90	0.974675
ORF7a	82	V82A	gTt	gCt	1344	1344	AY.4.1	0.99115
ORF7a	82	V82A	gTt	gCt	1319	1319	AY.39.1.1	0.955797
ORF7a	82	V82A	gTt	gCt	1276	1276	AY.91	0.932067
ORF7a	82	V82A	gTt	gCt	1225	1225	AY.50	0.979217
ORF7a	82	V82A	gTt	gCt	1176	1176	AY.86	0.975934
ORF7a	82	V82A	gTt	gCt	1155	1155	AY.4.3	0.972222
ORF7a	82	V82A	gTt	gCt	1122	1122	AY.87	0.934221
ORF7a	82	V82A	gTt	gCt	1098	1098	AY.95	0.835616
ORF7a	82	V82A	gTt	gCt	1085	1085	AY.109	0.802515
ORF7a	82	V82A	gTt	gCt	1017	1017	AY.46.3	0.94958
ORF7a	82	V82A	gTt	gCt	1010	1010	AY.60	0.947467
ORF7a	82	V82A	gTt	gCt	1005	1005	AY.51	0.913636
ORF7a	82	V82A	gTt	gCt	993	993	AY.58	0.901089
ORF7a	82	V82A	gTt	gCt	922	922	AY.55	0.845872
ORF7a	82	V82A	gTt	gCt	912	912	AY.16.1	0.428571
ORF7a	82	V82A	gTt	gCt	910	910	AY.88	0.804598
ORF7a	82	V82A	gTt	gCt	871	871	AY.108	0.960309
ORF7a	82	V82A	gTt	gCt	859	859	AY.40	0.828351
ORF7a	82	V82A	gTt	gCt	835	835	AY.52	0.679967
ORF7a	82	V82A	gTt	gCt	825	825	AY.99	0.865687
ORF7a	82	V82A	gTt	gCt	808	808	AY.79	0.978208
ORF7a	82	V82A	gTt	gCt	792	792	AY.77	0.892897
ORF7a	82	V82A	gTt	gCt	788	788	AY.46.1	0.809035
ORF7a	82	V82A	gTt	gCt	770	770	AY.66	0.823529
ORF7a	82	V82A	gTt	gCt	731	731	AY.11	0.978581
ORF7a	82	V82A	gTt	gCt	716	716	AY.72	0.97415
ORF7a	82	V82A	gTt	gCt	708	708	AY.120.2	0.910026
ORF7a	82	V82A	gTt	gCt	692	692	AY.19	0.789054
ORF7a	82	V82A	gTt	gCt	628	628	AY.78	0.967643
ORF7a	82	V82A	gTt	gCt	623	623	AY.99.1	0.967391
ORF7a	82	V82A	gTt	gCt	617	617	AY.39.2	0.950693
ORF7a	82	V82A	gTt	gCt	616	616	AY.82	0.835821
ORF7a	82	V82A	gTt	gCt	570	570	AY.56	0.914928
ORF7a	82	V82A	gTt	gCt	557	557	AY.97	0.947279
ORF7a	82	V82A	gTt	gCt	529	529	AY.28	1
ORF7a	82	V82A	gTt	gCt	505	505	AY.9.2.1	0.998024
ORF7a	82	V82A	gTt	gCt	503	503	AY.21	0.954459
ORF7a	82	V82A	gTt	gCt	500	500	B.1	0.00458
ORF7a	82	V82A	gTt	gCt	464	464	AY.22	0.970711
ORF7a	82	V82A	gTt	gCt	463	463	AY.80	0.522573
ORF7a	82	V82A	gTt	gCt	458	458	AY.81	0.912351
ORF7a	82	V82A	gTt	gCt	457	457	AY.83	0.787931
ORF7a	82	V82A	gTt	gCt	446	446	AY.15	0.991111
ORF7a	82	V82A	gTt	gCt	435	435	AY.104	0.863095
ORF7a	82	V82A	gTt	gCt	382	382	AY.5.2	0.940887
ORF7a	82	V82A	gTt	gCt	295	295	B.1.617.3	0.880597
ORF7a	82	V82A	gTt	gCt	271	271	AY.96	0.562241
ORF7a	82	V82A	gTt	gCt	254	254	AY.5.1	0.954887
ORF7a	82	V82A	gTt	gCt	234	234	AY.91.1	0.95122
ORF7a	82	V82A	gTt	gCt	207	207	AY.49	0.661342
ORF7a	82	V82A	gTt	gCt	202	202	AY.76	0.975845
ORF7a	82	V82A	gTt	gCt	196	196	AY.89	0.960784
ORF7a	82	V82A	gTt	gCt	122	122	AY.115	0.635417
ORF7a	82	V82A	gTt	gCt	120	121	B.1.1.7	0.000107
ORF7a	82	V82A	gTt	gCt	99	99	AY.18	1
ORF7a	82	V82A	gTt	gCt	83	83	AY.17	0.680328
ORF7a	82	V82A	gTt	gCt	52	52	AY.31	0.962963
ORF7a	82	V82A	gTt	gCt	49	49	B.1.214	0.179487
ORF7a	82	V82A	gTt	gCt	39	39	B.1.1	0.000707
ORF7a	82	V82A	gTt	gCt	27	27	B	0.003451
ORF7a	82	V82A	gTt	gCt	20	20	B.1.351	0.000595
ORF7a	82	V82A	gTt	gCt	12	12	B.1.177	0.000158
ORF7a	82	V82A	gTt	gCt	12	12	P.1	0.000189
ORF7a	82	V82A	gTt	gCt	11	11	B.1.621	0.000974
ORF7a	82	V82A	gTt	gCt	10	10	B.1.619.1	0.006414
ORF7a	82	V82A	gTt	gCt	9	9	B.1.177.73	0.005096
ORF7a	82	V82A	gTt	gCt	9	9	B.1.596	0.000784
ORF7a	82	V82A	gTt	gCt	8	8	B.1.2	0.00007
ORF7a	82	V82A	gTt	gCt	7	7	B.1.160	0.000218
ORF7a	82	V82A	gTt	gCt	7	7	B.1.628	0.002467
ORF7a	82	V82A	gTt	gCt	6	6	B.1.576	0.00544
ORF7a	82	V82A	gTt	gCt	5	5	B.1.1.317	0.002058
ORF7a	82	V82A	gTt	gCt	5	5	B.1.623	0.002682
ORF7a	82	V82A	gTt	gCt	4	4	A.2.5	0.001996
ORF7a	82	V82A	gTt	gCt	4	4	B.1.1.432	0.005063
ORF7a	82	V82A	gTt	gCt	4	4	B.1.375	0.003279
ORF7a	82	V82A	gTt	gCt	4	4	B.1.637	0.000292
ORF7a	82	V82A	gTt	gCt	4	4	C.37	0.000464
ORF7a	82	V82A	gTt	gCt	4	4	P.1.17	0.000647
ORF7a	82	V82A	gTt	gCt	3	3	A	0.001161
ORF7a	82	V82A	gTt	gCt	3	3	AZ.2	0.002463
ORF7a	82	V82A	gTt	gCt	3	3	B.1.429	0.000071
ORF7a	82	V82A	gTt	gCt	3	3	B.1.621.1	0.001517
ORF7a	82	V82A	gTt	gCt	2	2	AU.3	0.004219
ORF7a	82	V82A	gTt	gCt	2	2	B.1.1.318	0.000604
ORF7a	82	V82A	gTt	gCt	2	2	B.1.1.326	0.003521
ORF7a	82	V82A	gTt	gCt	1	2	B.1.1.377	0.001381
ORF7a	82	V82A	gTt	gCt	2	2	B.1.1.523	0.003125
ORF7a	82	V82A	gTt	gCt	2	2	B.1.157	0.00597
ORF7a	82	V82A	gTt	gCt	2	2	B.1.170	0.008621
ORF7a	82	V82A	gTt	gCt	2	2	B.1.243	0.000139
ORF7a	82	V82A	gTt	gCt	2	2	B.1.247	0.029851
ORF7a	82	V82A	gTt	gCt	2	2	B.1.258.11	0.000793
ORF7a	82	V82A	gTt	gCt	2	2	B.1.416.1	0.003125
ORF7a	82	V82A	gTt	gCt	2	2	B.1.427	0.000101
ORF7a	82	V82A	gTt	gCt	2	2	B.1.466.2	0.000782
ORF7a	82	V82A	gTt	gCt	2	2	B.1.595	0.000522
ORF7a	82	V82A	gTt	gCt	2	2	B.1.604	0.034483
ORF7a	82	V82A	gTt	gCt	2	2	B.1.619	0.001742
ORF7a	82	V82A	gTt	gCt	2	2	P.1.12	0.000968
ORF7a	82	V82A	gTt	gCt	2	2	P.1.7	0.000639
ORF7a	82	V82A	gTt	gCt	1	1		0.055556
ORF7a	82	V82A	gTt	gCt	1	1	A.2.5.2	0.001572
ORF7a	82	V82A	gTt	gCt	1	1	B.1.1.121	0.002427
ORF7a	82	V82A	gTt	gCt	1	1	B.1.1.28	0.000311
ORF7a	82	V82A	gTt	gCt	1	1	B.1.1.306	0.000438
ORF7a	82	V82A	gTt	gCt	1	1	B.1.1.348	0.000796
ORF7a	82	V82A	gTt	gCt	1	1	B.1.1.519	0.00004
ORF7a	82	V82A	gTt	gCt	1	1	B.1.1.526	0.003546
ORF7a	82	V82A	gTt	gCt	1	1	B.1.131	0.008772
ORF7a	82	V82A	gTt	gCt	1	1	B.1.142	0.002899
ORF7a	82	V82A	gTt	gCt	1	1	B.1.160.15	0.00495
ORF7a	82	V82A	gTt	gCt	1	1	B.1.177.7	0.000165
ORF7a	82	V82A	gTt	gCt	1	1	B.1.218	0.005155
ORF7a	82	V82A	gTt	gCt	1	1	B.1.221	0.000071
ORF7a	82	V82A	gTt	gCt	1	1	B.1.243.2	0.014493
ORF7a	82	V82A	gTt	gCt	1	1	B.1.258	0.000067
ORF7a	82	V82A	gTt	gCt	1	1	B.1.301	0.005917
ORF7a	82	V82A	gTt	gCt	1	1	B.1.349	0.000715
ORF7a	82	V82A	gTt	gCt	1	1	B.1.36	0.000146
ORF7a	82	V82A	gTt	gCt	1	1	B.1.36.31	0.001751
ORF7a	82	V82A	gTt	gCt	1	1	B.1.362	0.001541
ORF7a	82	V82A	gTt	gCt	1	1	B.1.400	0.000429
ORF7a	82	V82A	gTt	gCt	1	1	B.1.433	0.003195
ORF7a	82	V82A	gTt	gCt	1	1	B.1.438.1	0.000107
ORF7a	82	V82A	gTt	gCt	1	1	B.1.459	0.004082
ORF7a	82	V82A	gTt	gCt	1	1	B.1.474	0.001901
ORF7a	82	V82A	gTt	gCt	1	1	B.1.524	0.001406
ORF7a	82	V82A	gTt	gCt	1	1	B.1.525	0.000113
ORF7a	82	V82A	gTt	gCt	1	1	B.1.526	0.000024
ORF7a	82	V82A	gTt	gCt	1	1	B.1.564	0.000426
ORF7a	82	V82A	gTt	gCt	1	1	B.1.574	0.002151
ORF7a	82	V82A	gTt	gCt	1	1	B.1.582	0.000491
ORF7a	82	V82A	gTt	gCt	1	1	B.1.609	0.000479
ORF7a	82	V82A	gTt	gCt	1	1	B.1.83	0.015385
ORF7a	82	V82A	gTt	gCt	1	1	B.55	0.00295
ORF7a	82	V82A	gTt	gCt	1	1	C.36.3	0.000567
ORF7a	82	V82A	gTt	gCt	1	1	C.37.1	0.002618
ORF7a	82	V82A	gTt	gCt	1	1	P.1.1	0.000318
ORF7a	82	V82A	gTt	gCt	1	1	P.1.8	0.004785
ORF7a	82	V82A	gTt	gCt	1	1	P.3	0.001595
ORF7a	82	V82A	gTt	gCt	1	1	P.5	0.013699
ORF7a	82	V82A	gTt	gCt	1	1	Q.1	0.000126
ORF7a	82	V82A	gTt	gCt	1	1	Q.3	0.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.