CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 82 & Codon = ACt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a82V82TnonsynGTtACt5715690.99649727637-27639

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a82V82TGTtACt569571All0.000109
ORF7a82V82TGTtACt306306AY.40.000476
ORF7a82V82TGTtACt5454AY.370.017067
ORF7a82V82TGTtACt4949AY.440.000298
ORF7a82V82TGTtACt4444B.1.617.20.000166
ORF7a82V82TGTtACt2323AY.1030.000143
ORF7a82V82TGTtACt2222AY.1190.000777
ORF7a82V82TGTtACt1616AY.1200.000595
ORF7a82V82TGTtACt1212AY.1020.000318
ORF7a82V82TGTtACt77AY.250.000042
ORF7a82V82TGTtACt44AY.430.000018
ORF7a82V82TGTtACt44AY.930.001092
ORF7a82V82TGTtACt23AY.1000.000092
ORF7a82V82TGTtACt33AY.5.40.00083
ORF7a82V82TGTtACt22AY.1170.000169
ORF7a82V82TGTtACt22AY.460.000208
ORF7a82V82TGTtACt22AY.850.000854
ORF7a82V82TGTtACt22AY.99.10.003106
ORF7a82V82TGTtACt11AY.1060.000335
ORF7a82V82TGTtACt11AY.1100.000113
ORF7a82V82TGTtACt11AY.1160.000287
ORF7a82V82TGTtACt11AY.1180.000063
ORF7a82V82TGTtACt11AY.120.20.001285
ORF7a82V82TGTtACt11AY.290.000016
ORF7a82V82TGTtACt11AY.30.00001
ORF7a82V82TGTtACt11AY.4.20.000022
ORF7a82V82TGTtACt11AY.4.50.000107
ORF7a82V82TGTtACt11AY.46.20.000635
ORF7a82V82TGTtACt11AY.46.40.000165
ORF7a82V82TGTtACt11AY.550.000917
ORF7a82V82TGTtACt11AY.700.000209
ORF7a82V82TGTtACt11AY.9.20.000037
ORF7a82V82TGTtACt11B.1.177.630.002703

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.