CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 82 & Codon = ---

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF7a	82	V82del		del	GTT	---	6245	6245	1	27637-27639

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF7a	82	V82del	GTT	---	6245	6245	All	0.001194
ORF7a	82	V82del	GTT	---	1860	1860	AY.4	0.002895
ORF7a	82	V82del	GTT	---	1081	1081	B.1.1.7	0.000968
ORF7a	82	V82del	GTT	---	379	379	AY.4.2	0.00822
ORF7a	82	V82del	GTT	---	225	225	AY.103	0.001397
ORF7a	82	V82del	GTT	---	215	215	B.1.617.2	0.00081
ORF7a	82	V82del	GTT	---	179	179	B.1.177.21	0.013688
ORF7a	82	V82del	GTT	---	167	167	AY.39	0.004127
ORF7a	82	V82del	GTT	---	138	138	AY.44	0.00084
ORF7a	82	V82del	GTT	---	128	128	AY.43	0.000567
ORF7a	82	V82del	GTT	---	112	112	AY.100	0.005153
ORF7a	82	V82del	GTT	---	112	112	AY.29	0.001767
ORF7a	82	V82del	GTT	---	96	96	AY.3	0.000955
ORF7a	82	V82del	GTT	---	76	76	AY.42	0.003057
ORF7a	82	V82del	GTT	---	72	72	AY.25	0.000433
ORF7a	82	V82del	GTT	---	70	70	AY.98	0.00553
ORF7a	82	V82del	GTT	---	55	55	AY.120	0.002045
ORF7a	82	V82del	GTT	---	55	55	B.1.177	0.000724
ORF7a	82	V82del	GTT	---	55	55	B.1.2	0.000484
ORF7a	82	V82del	GTT	---	51	51	B.1.526	0.001199
ORF7a	82	V82del	GTT	---	40	40	AY.26	0.001132
ORF7a	82	V82del	GTT	---	40	40	B.1.1.284	0.004296
ORF7a	82	V82del	GTT	---	37	37	B.1.621	0.003275
ORF7a	82	V82del	GTT	---	34	34	B.1	0.000311
ORF7a	82	V82del	GTT	---	33	33	AY.3.1	0.002814
ORF7a	82	V82del	GTT	---	32	32	P.1	0.000504
ORF7a	82	V82del	GTT	---	31	31	AY.46.6	0.002238
ORF7a	82	V82del	GTT	---	30	30	AY.119	0.001059
ORF7a	82	V82del	GTT	---	26	26	AY.36	0.003854
ORF7a	82	V82del	GTT	---	25	25	B.1.1.214	0.001386
ORF7a	82	V82del	GTT	---	24	24	AY.7.2	0.013423
ORF7a	82	V82del	GTT	---	23	23	AY.6	0.000946
ORF7a	82	V82del	GTT	---	22	22	B.1.637	0.001608
ORF7a	82	V82del	GTT	---	21	21	AY.5	0.000434
ORF7a	82	V82del	GTT	---	21	21	AY.75	0.001176
ORF7a	82	V82del	GTT	---	20	20	AY.20	0.000777
ORF7a	82	V82del	GTT	---	20	20	AY.47	0.000622
ORF7a	82	V82del	GTT	---	20	20	B.1.351	0.000595
ORF7a	82	V82del	GTT	---	19	19	AY.46.4	0.003126
ORF7a	82	V82del	GTT	---	19	19	AY.98.1	0.00092
ORF7a	82	V82del	GTT	---	16	16	B.1.160	0.000499
ORF7a	82	V82del	GTT	---	16	16	B.1.429	0.000376
ORF7a	82	V82del	GTT	---	16	16	B.1.525	0.001811
ORF7a	82	V82del	GTT	---	15	15	AY.117	0.001268
ORF7a	82	V82del	GTT	---	15	15	AY.30	0.005936
ORF7a	82	V82del	GTT	---	14	14	B.1.1.258	0.045603
ORF7a	82	V82del	GTT	---	13	13	AY.23	0.000907
ORF7a	82	V82del	GTT	---	12	12	B.1.324	0.019262
ORF7a	82	V82del	GTT	---	12	12	C.37	0.001393
ORF7a	82	V82del	GTT	---	12	12	R.1	0.00108
ORF7a	82	V82del	GTT	---	11	11	AY.110	0.00124
ORF7a	82	V82del	GTT	---	11	11	AY.121	0.001488
ORF7a	82	V82del	GTT	---	11	11	AY.71	0.005226
ORF7a	82	V82del	GTT	---	11	11	B.1.1	0.0002
ORF7a	82	V82del	GTT	---	11	11	N.7	0.323529
ORF7a	82	V82del	GTT	---	10	10	AY.9	0.000676
ORF7a	82	V82del	GTT	---	10	10	Q.8	0.001649
ORF7a	82	V82del	GTT	---	9	9	AY.118	0.000564
ORF7a	82	V82del	GTT	---	9	9	AY.39.1	0.000357
ORF7a	82	V82del	GTT	---	9	9	B.1.596	0.000784
ORF7a	82	V82del	GTT	---	9	9	L.1	0.017143
ORF7a	82	V82del	GTT	---	8	8	AY.99.2	0.000737
ORF7a	82	V82del	GTT	---	8	8	B.1.1.231	0.024768
ORF7a	82	V82del	GTT	---	7	7	AY.35	0.001631
ORF7a	82	V82del	GTT	---	7	7	AY.9.2	0.000257
ORF7a	82	V82del	GTT	---	6	6	AY.33	0.000401
ORF7a	82	V82del	GTT	---	6	6	AY.34	0.000582
ORF7a	82	V82del	GTT	---	6	6	AY.45	0.00073
ORF7a	82	V82del	GTT	---	6	6	AY.54	0.000572
ORF7a	82	V82del	GTT	---	6	6	B.1.1.519	0.000238
ORF7a	82	V82del	GTT	---	6	6	P.1.15	0.001394
ORF7a	82	V82del	GTT	---	5	5	AY.106	0.001674
ORF7a	82	V82del	GTT	---	5	5	AY.114	0.001156
ORF7a	82	V82del	GTT	---	5	5	AY.80	0.005643
ORF7a	82	V82del	GTT	---	5	5	B.1.375	0.004098
ORF7a	82	V82del	GTT	---	5	5	B.1.427	0.000252
ORF7a	82	V82del	GTT	---	5	5	Q.1	0.000632
ORF7a	82	V82del	GTT	---	4	4	AY.113	0.00057
ORF7a	82	V82del	GTT	---	4	4	AY.120.1	0.001284
ORF7a	82	V82del	GTT	---	4	4	AY.14	0.000352
ORF7a	82	V82del	GTT	---	4	4	AY.29.1	0.000882
ORF7a	82	V82del	GTT	---	4	4	AY.4.5	0.00043
ORF7a	82	V82del	GTT	---	4	4	AY.46	0.000416
ORF7a	82	V82del	GTT	---	4	4	AY.61	0.000419
ORF7a	82	V82del	GTT	---	4	4	AY.68	0.001095
ORF7a	82	V82del	GTT	---	4	4	B.1.1.25	0.002274
ORF7a	82	V82del	GTT	---	4	4	B.1.243	0.000278
ORF7a	82	V82del	GTT	---	3	3	A	0.001161
ORF7a	82	V82del	GTT	---	3	3	AY.12	0.000948
ORF7a	82	V82del	GTT	---	3	3	AY.13	0.000483
ORF7a	82	V82del	GTT	---	3	3	AY.24	0.001293
ORF7a	82	V82del	GTT	---	3	3	AY.37	0.000948
ORF7a	82	V82del	GTT	---	3	3	AY.53	0.000863
ORF7a	82	V82del	GTT	---	3	3	AY.7	0.000588
ORF7a	82	V82del	GTT	---	3	3	AY.7.1	0.000338
ORF7a	82	V82del	GTT	---	3	3	AY.88	0.002653
ORF7a	82	V82del	GTT	---	3	3	B.1.1.121	0.007282
ORF7a	82	V82del	GTT	---	3	3	B.1.1.170	0.003741
ORF7a	82	V82del	GTT	---	3	3	B.1.214.2	0.001799
ORF7a	82	V82del	GTT	---	3	3	B.1.234	0.000396
ORF7a	82	V82del	GTT	---	3	3	B.1.351.2	0.000908
ORF7a	82	V82del	GTT	---	3	3	B.1.575	0.00091
ORF7a	82	V82del	GTT	---	3	3	B.1.626	0.017143
ORF7a	82	V82del	GTT	---	3	3	C.12	0.021583
ORF7a	82	V82del	GTT	---	2	2		0.111111
ORF7a	82	V82del	GTT	---	2	2	A.28	0.005291
ORF7a	82	V82del	GTT	---	2	2	AY.102	0.000053
ORF7a	82	V82del	GTT	---	2	2	AY.108	0.002205
ORF7a	82	V82del	GTT	---	2	2	AY.109	0.001479
ORF7a	82	V82del	GTT	---	2	2	AY.111	0.000366
ORF7a	82	V82del	GTT	---	2	2	AY.19	0.002281
ORF7a	82	V82del	GTT	---	2	2	AY.27	0.000129
ORF7a	82	V82del	GTT	---	2	2	AY.75.1	0.000361
ORF7a	82	V82del	GTT	---	2	2	AY.85	0.000854
ORF7a	82	V82del	GTT	---	2	2	AY.9.1	0.000167
ORF7a	82	V82del	GTT	---	2	2	AY.91	0.001461
ORF7a	82	V82del	GTT	---	2	2	AY.92	0.000575
ORF7a	82	V82del	GTT	---	2	2	AY.99	0.002099
ORF7a	82	V82del	GTT	---	2	2	B	0.000256
ORF7a	82	V82del	GTT	---	2	2	B.1.1.220	0.003717
ORF7a	82	V82del	GTT	---	2	2	B.1.1.37	0.000386
ORF7a	82	V82del	GTT	---	2	2	B.1.1.521	0.010695
ORF7a	82	V82del	GTT	---	2	2	B.1.1.70	0.000682
ORF7a	82	V82del	GTT	---	2	2	B.1.177.10	0.001756
ORF7a	82	V82del	GTT	---	2	2	B.1.177.15	0.001262
ORF7a	82	V82del	GTT	---	2	2	B.1.177.60	0.000437
ORF7a	82	V82del	GTT	---	2	2	B.1.177.81	0.000379
ORF7a	82	V82del	GTT	---	2	2	B.1.177.86	0.000367
ORF7a	82	V82del	GTT	---	2	2	B.1.221	0.000142
ORF7a	82	V82del	GTT	---	2	2	B.1.258.11	0.000793
ORF7a	82	V82del	GTT	---	2	2	B.1.36	0.000292
ORF7a	82	V82del	GTT	---	2	2	B.1.499	0.002101
ORF7a	82	V82del	GTT	---	2	2	B.1.595	0.000522
ORF7a	82	V82del	GTT	---	2	2	P.1.14	0.000096
ORF7a	82	V82del	GTT	---	1	1	A.1	0.000282
ORF7a	82	V82del	GTT	---	1	1	A.2.2	0.001689
ORF7a	82	V82del	GTT	---	1	1	AY.101	0.00049
ORF7a	82	V82del	GTT	---	1	1	AY.104	0.001984
ORF7a	82	V82del	GTT	---	1	1	AY.116.1	0.000311
ORF7a	82	V82del	GTT	---	1	1	AY.16	0.00038
ORF7a	82	V82del	GTT	---	1	1	AY.34.1	0.00051
ORF7a	82	V82del	GTT	---	1	1	AY.38	0.000499
ORF7a	82	V82del	GTT	---	1	1	AY.4.1	0.000737
ORF7a	82	V82del	GTT	---	1	1	AY.4.2.1	0.000149
ORF7a	82	V82del	GTT	---	1	1	AY.4.4	0.000409
ORF7a	82	V82del	GTT	---	1	1	AY.46.5	0.000198
ORF7a	82	V82del	GTT	---	1	1	AY.48	0.000465
ORF7a	82	V82del	GTT	---	1	1	AY.52	0.000814
ORF7a	82	V82del	GTT	---	1	1	AY.59	0.00053
ORF7a	82	V82del	GTT	---	1	1	AY.62	0.000436
ORF7a	82	V82del	GTT	---	1	1	AY.66	0.00107
ORF7a	82	V82del	GTT	---	1	1	AY.69	0.000187
ORF7a	82	V82del	GTT	---	1	1	AY.70	0.000209
ORF7a	82	V82del	GTT	---	1	1	AY.73	0.000665
ORF7a	82	V82del	GTT	---	1	1	AY.74	0.000116
ORF7a	82	V82del	GTT	---	1	1	AY.84	0.000437
ORF7a	82	V82del	GTT	---	1	1	AY.95	0.000761
ORF7a	82	V82del	GTT	---	1	1	AZ.2	0.000821
ORF7a	82	V82del	GTT	---	1	1	B.1.1.1	0.000327
ORF7a	82	V82del	GTT	---	1	1	B.1.1.174	0.003378
ORF7a	82	V82del	GTT	---	1	1	B.1.1.192	0.002309
ORF7a	82	V82del	GTT	---	1	1	B.1.1.194	0.00495
ORF7a	82	V82del	GTT	---	1	1	B.1.1.205	0.003717
ORF7a	82	V82del	GTT	---	1	1	B.1.1.207	0.001182
ORF7a	82	V82del	GTT	---	1	1	B.1.1.277	0.000759
ORF7a	82	V82del	GTT	---	1	1	B.1.1.303	0.002762
ORF7a	82	V82del	GTT	---	1	1	B.1.1.318	0.000302
ORF7a	82	V82del	GTT	---	1	1	B.1.1.33	0.000421
ORF7a	82	V82del	GTT	---	1	1	B.1.1.366	0.015873
ORF7a	82	V82del	GTT	---	1	1	B.1.1.437	0.010417
ORF7a	82	V82del	GTT	---	1	1	B.1.1.448	0.002033
ORF7a	82	V82del	GTT	---	1	1	B.1.115	0.021739
ORF7a	82	V82del	GTT	---	1	1	B.1.160.16	0.000929
ORF7a	82	V82del	GTT	---	1	1	B.1.160.30	0.002976
ORF7a	82	V82del	GTT	---	1	1	B.1.177.31	0.011494
ORF7a	82	V82del	GTT	---	1	1	B.1.177.50	0.004695
ORF7a	82	V82del	GTT	---	1	1	B.1.177.57	0.000281
ORF7a	82	V82del	GTT	---	1	1	B.1.177.62	0.001192
ORF7a	82	V82del	GTT	---	1	1	B.1.221.1	0.002907
ORF7a	82	V82del	GTT	---	1	1	B.1.240	0.000216
ORF7a	82	V82del	GTT	---	1	1	B.1.252	0.006623
ORF7a	82	V82del	GTT	---	1	1	B.1.258	0.000067
ORF7a	82	V82del	GTT	---	1	1	B.1.258.17	0.000104
ORF7a	82	V82del	GTT	---	1	1	B.1.265	0.001271
ORF7a	82	V82del	GTT	---	1	1	B.1.319	0.003049
ORF7a	82	V82del	GTT	---	1	1	B.1.351.3	0.000876
ORF7a	82	V82del	GTT	---	1	1	B.1.371	0.001122
ORF7a	82	V82del	GTT	---	1	1	B.1.406	0.006061
ORF7a	82	V82del	GTT	---	1	1	B.1.459	0.004082
ORF7a	82	V82del	GTT	---	1	1	B.1.466.2	0.000391
ORF7a	82	V82del	GTT	---	1	1	B.1.468	0.005714
ORF7a	82	V82del	GTT	---	1	1	B.1.470	0.001404
ORF7a	82	V82del	GTT	---	1	1	B.1.527	0.003704
ORF7a	82	V82del	GTT	---	1	1	B.1.535	0.028571
ORF7a	82	V82del	GTT	---	1	1	B.1.564.1	0.001577
ORF7a	82	V82del	GTT	---	1	1	B.1.576	0.000907
ORF7a	82	V82del	GTT	---	1	1	B.1.577	0.000687
ORF7a	82	V82del	GTT	---	1	1	B.1.582	0.000491
ORF7a	82	V82del	GTT	---	1	1	B.1.602	0.006536
ORF7a	82	V82del	GTT	---	1	1	B.1.617.1	0.000129
ORF7a	82	V82del	GTT	---	1	1	B.1.620	0.000946
ORF7a	82	V82del	GTT	---	1	1	B.1.621.1	0.000506
ORF7a	82	V82del	GTT	---	1	1	B.1.628	0.000352
ORF7a	82	V82del	GTT	---	1	1	B.1.638	0.052632
ORF7a	82	V82del	GTT	---	1	1	B.1.88.1	0.004808
ORF7a	82	V82del	GTT	---	1	1	B.1.9.1	0.032258
ORF7a	82	V82del	GTT	---	1	1	B.1.93	0.000934
ORF7a	82	V82del	GTT	---	1	1	C.36.3	0.000567
ORF7a	82	V82del	GTT	---	1	1	D.2	0.000075
ORF7a	82	V82del	GTT	---	1	1	N.5	0.001767
ORF7a	82	V82del	GTT	---	1	1	P.1.1	0.000318
ORF7a	82	V82del	GTT	---	1	1	P.1.13	0.000898
ORF7a	82	V82del	GTT	---	1	1	P.1.16	0.000374
ORF7a	82	V82del	GTT	---	1	1	P.1.3	0.034483
ORF7a	82	V82del	GTT	---	1	1	P.1.4	0.000977
ORF7a	82	V82del	GTT	---	1	1	P.2	0.000187
ORF7a	82	V82del	GTT	---	1	1	Q.7	0.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.