CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 82 | V82A | nonsyn | gTt | gCt | 2596355 | 2596239 | 0.999955 | 27637-27639 | |
ORF7a | 82 | V82A | nonsyn | gTT | gCC | 2596355 | 70 | 0.0000269609 | 27637-27639 | |
ORF7a | 82 | V82A | nonsyn | gTT | gCG | 2596355 | 31 | 0.0000119398 | 27637-27639 | |
ORF7a | 82 | V82A | nonsyn | gTT | gCA | 2596355 | 15 | 0.00000577733 | 27637-27639 | |
ORF7a | 82 | V82del | del | GTT | --- | 6245 | 6245 | 1 | 27637-27639 | |
ORF7a | 82 | V82S | nonsyn | GTt | TCt | 935 | 930 | 0.994652 | 27637-27639 | |
ORF7a | 82 | V82S | nonsyn | GTt | AGt | 935 | 4 | 0.00427807 | 27637-27639 | |
ORF7a | 82 | V82S | nonsyn | GTT | AGC | 935 | 1 | 0.00106952 | 27637-27639 | |
ORF7a | 82 | V82F | nonsyn | Gtt | Ttt | 793 | 793 | 1 | 27637-27639 | |
ORF7a | 82 | V82T | nonsyn | GTt | ACt | 571 | 569 | 0.996497 | 27637-27639 | |
ORF7a | 82 | V82T | nonsyn | GTT | ACA | 571 | 1 | 0.00175131 | 27637-27639 | |
ORF7a | 82 | V82T | nonsyn | GTT | ACC | 571 | 1 | 0.00175131 | 27637-27639 | |
ORF7a | 82 | V82V | syn | gtT | gtC | 335 | 315 | 0.940298 | 27637-27639 | |
ORF7a | 82 | V82V | syn | gtT | gtG | 335 | 12 | 0.0358209 | 27637-27639 | |
ORF7a | 82 | V82V | syn | gtT | gtA | 335 | 8 | 0.0238806 | 27637-27639 | |
ORF7a | 82 | V82del1 | del | Gtt | -tt | 326 | 263 | 0.806748 | 27637-27639 | |
ORF7a | 82 | V82del1 | del | gTt | g-t | 326 | 20 | 0.0613497 | 27637-27639 | |
ORF7a | 82 | V82del1 | del | gTT | gC- | 326 | 17 | 0.0521472 | 27637-27639 | |
ORF7a | 82 | V82del1 | del | gtT | gt- | 326 | 11 | 0.0337423 | 27637-27639 | |
ORF7a | 82 | V82del1 | del | GTt | -Ct | 326 | 7 | 0.0214724 | 27637-27639 | |
ORF7a | 82 | V82del1 | del | GTT | -CA | 326 | 2 | 0.00613497 | 27637-27639 | |
ORF7a | 82 | V82del1 | del | gTT | g-C | 326 | 2 | 0.00613497 | 27637-27639 | |
ORF7a | 82 | V82del1 | del | GTT | -NN | 326 | 2 | 0.00613497 | 27637-27639 | |
ORF7a | 82 | V82del1 | del | GtT | -tN | 326 | 1 | 0.00306748 | 27637-27639 | |
ORF7a | 82 | V82del1 | del | GtT | -tA | 326 | 1 | 0.00306748 | 27637-27639 | |
ORF7a | 82 | V82del2 | del | GTt | --t | 226 | 185 | 0.818584 | 27637-27639 | |
ORF7a | 82 | V82del2 | del | gTT | g-- | 226 | 22 | 0.0973451 | 27637-27639 | |
ORF7a | 82 | V82del2 | del | GTT | --N | 226 | 19 | 0.0840708 | 27637-27639 | |
ORF7a | 82 | V82I | nonsyn | Gtt | Att | 164 | 160 | 0.97561 | 27637-27639 | |
ORF7a | 82 | V82I | nonsyn | GtT | AtA | 164 | 4 | 0.0243902 | 27637-27639 | |
ORF7a | 82 | V82D | nonsyn | gTt | gAt | 108 | 107 | 0.990741 | 27637-27639 | |
ORF7a | 82 | V82D | nonsyn | gTT | gAC | 108 | 1 | 0.00925926 | 27637-27639 | |
ORF7a | 82 | V82P | nonsyn | GTt | CCt | 34 | 34 | 1 | 27637-27639 | |
ORF7a | 82 | V82L | nonsyn | Gtt | Ctt | 21 | 21 | 1 | 27637-27639 | |
ORF7a | 82 | V82G | nonsyn | gTt | gGt | 21 | 20 | 0.952381 | 27637-27639 | |
ORF7a | 82 | V82G | nonsyn | gTT | gGC | 21 | 1 | 0.047619 | 27637-27639 | |
ORF7a | 82 | V82N | nonsyn | GTt | AAt | 9 | 8 | 0.888889 | 27637-27639 | |
ORF7a | 82 | V82N | nonsyn | GTT | AAC | 9 | 1 | 0.111111 | 27637-27639 | |
ORF7a | 82 | V82H | nonsyn | GTt | CAt | 6 | 6 | 1 | 27637-27639 | |
ORF7a | 82 | V82K | nonsyn | GTT | AAA | 3 | 3 | 1 | 27637-27639 | |
ORF7a | 82 | V82X | nonsyn | GTT | TAA | 2 | 2 | 1 | 27637-27639 | |
ORF7a | 82 | V82R | nonsyn | GTT | CGA | 1 | 1 | 1 | 27637-27639 | |
ORF7a | 82 | V82W | nonsyn | GTT | TGG | 1 | 1 | 1 | 27637-27639 | |
ORF7a | 82 | V82M | nonsyn | GtT | AtG | 1 | 1 | 1 | 27637-27639 | |
ORF7a | 82 | V82C | nonsyn | GTt | TGt | 1 | 1 | 1 | 27637-27639 | |
ORF7a | 82 | V82E | nonsyn | gTT | gAG | 1 | 1 | 1 | 27637-27639 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 82 | V82A | gTt | gCt | 2596239 | 2596355 | All | 0.496561 |
ORF7a | 82 | V82A | gTT | gCC | 70 | 2596355 | All | 0.000013 |
ORF7a | 82 | V82A | gTT | gCG | 31 | 2596355 | All | 0.000006 |
ORF7a | 82 | V82A | gTT | gCA | 15 | 2596355 | All | 0.000003 |
ORF7a | 82 | V82A | gTt | gCt | 611892 | 611908 | AY.4 | 0.952363 |
ORF7a | 82 | V82A | gTT | gCC | 12 | 611908 | AY.4 | 0.000019 |
ORF7a | 82 | V82A | gTT | gCG | 3 | 611908 | AY.4 | 0.000005 |
ORF7a | 82 | V82A | gTT | gCA | 1 | 611908 | AY.4 | 0.000002 |
ORF7a | 82 | V82A | gTt | gCt | 256314 | 256329 | B.1.617.2 | 0.965128 |
ORF7a | 82 | V82A | gTT | gCA | 7 | 256329 | B.1.617.2 | 0.000026 |
ORF7a | 82 | V82A | gTT | gCC | 4 | 256329 | B.1.617.2 | 0.000015 |
ORF7a | 82 | V82A | gTT | gCG | 4 | 256329 | B.1.617.2 | 0.000015 |
ORF7a | 82 | V82A | gTt | gCt | 213858 | 213869 | AY.43 | 0.94749 |
ORF7a | 82 | V82A | gTT | gCG | 8 | 213869 | AY.43 | 0.000035 |
ORF7a | 82 | V82A | gTT | gCC | 2 | 213869 | AY.43 | 0.000009 |
ORF7a | 82 | V82A | gTT | gCA | 1 | 213869 | AY.43 | 0.000004 |
ORF7a | 82 | V82A | gTt | gCt | 157636 | 157641 | AY.25 | 0.948152 |
ORF7a | 82 | V82A | gTT | gCC | 5 | 157641 | AY.25 | 0.00003 |
ORF7a | 82 | V82A | gTt | gCt | 151829 | 151831 | AY.44 | 0.924147 |
ORF7a | 82 | V82A | gTT | gCC | 2 | 151831 | AY.44 | 0.000012 |
ORF7a | 82 | V82A | gTt | gCt | 151148 | 151151 | AY.103 | 0.938487 |
ORF7a | 82 | V82A | gTT | gCC | 3 | 151151 | AY.103 | 0.000019 |
ORF7a | 82 | V82A | gTt | gCt | 94602 | 94609 | AY.3 | 0.940948 |
ORF7a | 82 | V82A | gTT | gCG | 7 | 94609 | AY.3 | 0.00007 |
ORF7a | 82 | V82A | gTt | gCt | 63165 | 63166 | AY.29 | 0.996341 |
ORF7a | 82 | V82A | gTT | gCC | 1 | 63166 | AY.29 | 0.000016 |
ORF7a | 82 | V82A | gTt | gCt | 45197 | 45197 | AY.4.2 | 0.980263 |
ORF7a | 82 | V82A | gTt | gCt | 44963 | 44963 | AY.5 | 0.92845 |
ORF7a | 82 | V82A | gTt | gCt | 37398 | 37398 | AY.102 | 0.991569 |
ORF7a | 82 | V82A | gTt | gCt | 33125 | 33125 | AY.26 | 0.937774 |
ORF7a | 82 | V82A | gTt | gCt | 30285 | 30285 | AY.47 | 0.94202 |
ORF7a | 82 | V82A | gTt | gCt | 26515 | 26518 | AY.119 | 0.936198 |
ORF7a | 82 | V82A | gTT | gCC | 2 | 26518 | AY.119 | 0.000071 |
ORF7a | 82 | V82A | gTT | gCG | 1 | 26518 | AY.119 | 0.000035 |
ORF7a | 82 | V82A | gTt | gCt | 26020 | 26022 | AY.9.2 | 0.955704 |
ORF7a | 82 | V82A | gTT | gCG | 1 | 26022 | AY.9.2 | 0.000037 |
ORF7a | 82 | V82A | gTT | gCC | 1 | 26022 | AY.9.2 | 0.000037 |
ORF7a | 82 | V82A | gTt | gCt | 25233 | 25236 | AY.39 | 0.623545 |
ORF7a | 82 | V82A | gTT | gCC | 2 | 25236 | AY.39 | 0.000049 |
ORF7a | 82 | V82A | gTT | gCG | 1 | 25236 | AY.39 | 0.000025 |
ORF7a | 82 | V82A | gTt | gCt | 24527 | 24527 | AY.39.1 | 0.971597 |
ORF7a | 82 | V82A | gTt | gCt | 24336 | 24338 | AY.20 | 0.945822 |
ORF7a | 82 | V82A | gTT | gCA | 1 | 24338 | AY.20 | 0.000039 |
ORF7a | 82 | V82A | gTT | gCG | 1 | 24338 | AY.20 | 0.000039 |
ORF7a | 82 | V82A | gTt | gCt | 23516 | 23516 | AY.6 | 0.967179 |
ORF7a | 82 | V82A | gTt | gCt | 23306 | 23308 | AY.120 | 0.866491 |
ORF7a | 82 | V82A | gTT | gCC | 2 | 23308 | AY.120 | 0.000074 |
ORF7a | 82 | V82A | gTt | gCt | 23012 | 23012 | AY.42 | 0.925775 |
ORF7a | 82 | V82A | gTt | gCt | 19598 | 19599 | AY.98.1 | 0.949148 |
ORF7a | 82 | V82A | gTT | gCC | 1 | 19599 | AY.98.1 | 0.000048 |
ORF7a | 82 | V82A | gTt | gCt | 18831 | 18832 | AY.100 | 0.866351 |
ORF7a | 82 | V82A | gTT | gCC | 1 | 18832 | AY.100 | 0.000046 |
ORF7a | 82 | V82A | gTt | gCt | 16260 | 16276 | AY.75 | 0.910924 |
ORF7a | 82 | V82A | gTT | gCC | 16 | 16276 | AY.75 | 0.000896 |
ORF7a | 82 | V82A | gTt | gCt | 15122 | 15122 | AY.118 | 0.947375 |
ORF7a | 82 | V82A | gTt | gCt | 14512 | 14512 | AY.27 | 0.939227 |
ORF7a | 82 | V82A | gTt | gCt | 14044 | 14044 | AY.9 | 0.949304 |
ORF7a | 82 | V82A | gTt | gCt | 13693 | 13697 | AY.33 | 0.914391 |
ORF7a | 82 | V82A | gTT | gCC | 2 | 13697 | AY.33 | 0.000134 |
ORF7a | 82 | V82A | gTT | gCG | 1 | 13697 | AY.33 | 0.000067 |
ORF7a | 82 | V82A | gTT | gCA | 1 | 13697 | AY.33 | 0.000067 |
ORF7a | 82 | V82A | gTt | gCt | 13140 | 13140 | AY.46.6 | 0.948805 |
ORF7a | 82 | V82A | gTt | gCt | 12472 | 12472 | AY.23 | 0.869917 |
ORF7a | 82 | V82A | gTt | gCt | 11831 | 11831 | AY.98 | 0.934592 |
ORF7a | 82 | V82A | gTt | gCt | 11554 | 11554 | AY.9.1 | 0.967348 |
ORF7a | 82 | V82A | gTt | gCt | 11081 | 11081 | AY.117 | 0.936528 |
ORF7a | 82 | V82A | gTt | gCt | 10913 | 10913 | AY.14 | 0.960482 |
ORF7a | 82 | V82A | gTt | gCt | 10738 | 10738 | AY.3.1 | 0.915509 |
ORF7a | 82 | V82A | gTt | gCt | 10214 | 10214 | AY.99.2 | 0.941296 |
ORF7a | 82 | V82A | gTt | gCt | 9938 | 9938 | AY.34 | 0.963638 |
ORF7a | 82 | V82A | gTt | gCt | 9772 | 9772 | AY.54 | 0.931732 |
ORF7a | 82 | V82A | gTt | gCt | 9147 | 9147 | AY.61 | 0.958403 |
ORF7a | 82 | V82A | gTt | gCt | 8975 | 8977 | AY.46 | 0.934117 |
ORF7a | 82 | V82A | gTT | gCG | 1 | 8977 | AY.46 | 0.000104 |
ORF7a | 82 | V82A | gTT | gCC | 1 | 8977 | AY.46 | 0.000104 |
ORF7a | 82 | V82A | gTt | gCt | 8640 | 8640 | AY.110 | 0.973631 |
ORF7a | 82 | V82A | gTt | gCt | 8587 | 8587 | AY.4.5 | 0.923036 |
ORF7a | 82 | V82A | gTt | gCt | 8518 | 8518 | AY.74 | 0.985082 |
ORF7a | 82 | V82A | gTt | gCt | 8265 | 8265 | AY.7.1 | 0.931478 |
ORF7a | 82 | V82A | gTt | gCt | 7503 | 7503 | AY.45 | 0.912996 |
ORF7a | 82 | V82A | gTt | gCt | 6778 | 6778 | B.1.617.1 | 0.874129 |
ORF7a | 82 | V82A | gTt | gCt | 6594 | 6594 | AY.113 | 0.938915 |
ORF7a | 82 | V82A | gTt | gCt | 6305 | 6312 | AY.36 | 0.934489 |
ORF7a | 82 | V82A | gTT | gCC | 7 | 6312 | AY.36 | 0.001037 |
ORF7a | 82 | V82del | GTT | --- | 6245 | 6245 | All | 0.001194 |
ORF7a | 82 | V82A | gTt | gCt | 6144 | 6148 | AY.121 | 0.831394 |
ORF7a | 82 | V82A | gTT | gCA | 4 | 6148 | AY.121 | 0.000541 |
ORF7a | 82 | V82A | gTt | gCt | 6067 | 6067 | AY.4.2.1 | 0.903903 |
ORF7a | 82 | V82A | gTt | gCt | 5895 | 5895 | AY.13 | 0.94897 |
ORF7a | 82 | V82A | gTt | gCt | 5813 | 5813 | AY.46.4 | 0.956243 |
ORF7a | 82 | V82A | gTt | gCt | 5336 | 5336 | AY.69 | 0.99608 |
ORF7a | 82 | V82A | gTt | gCt | 5229 | 5229 | AY.111 | 0.957692 |
ORF7a | 82 | V82A | gTt | gCt | 4899 | 4899 | AY.46.5 | 0.972024 |
ORF7a | 82 | V82A | gTt | gCt | 4831 | 4831 | AY.7 | 0.946884 |
ORF7a | 82 | V82A | gTt | gCt | 4645 | 4645 | AY.70 | 0.968515 |
ORF7a | 82 | V82A | gTt | gCt | 4614 | 4614 | AY.75.1 | 0.831951 |
ORF7a | 82 | V82A | gTt | gCt | 4520 | 4520 | AY.29.1 | 0.996692 |
ORF7a | 82 | V82A | gTt | gCt | 4146 | 4146 | AY.35 | 0.966208 |
ORF7a | 82 | V82A | gTt | gCt | 4015 | 4016 | AY.114 | 0.927895 |
ORF7a | 82 | V82A | gTT | gCC | 1 | 4016 | AY.114 | 0.000231 |
ORF7a | 82 | V82A | gTt | gCt | 3600 | 3600 | AY.93 | 0.983069 |
ORF7a | 82 | V82A | gTt | gCt | 3386 | 3386 | AY.5.4 | 0.936912 |
ORF7a | 82 | V82A | gTt | gCt | 3291 | 3291 | AY.41 | 0.967372 |
ORF7a | 82 | V82A | gTt | gCt | 3258 | 3258 | AY.53 | 0.936745 |
ORF7a | 82 | V82A | gTt | gCt | 3233 | 3233 | AY.116 | 0.927158 |
ORF7a | 82 | V82A | gTt | gCt | 3017 | 3017 | AY.116.1 | 0.939583 |
ORF7a | 82 | V82A | gTt | gCt | 2969 | 2969 | AY.68 | 0.812757 |
ORF7a | 82 | V82A | gTt | gCt | 2957 | 2957 | AY.92 | 0.849469 |
ORF7a | 82 | V82A | gTt | gCt | 2879 | 2879 | AY.37 | 0.909924 |
ORF7a | 82 | V82A | gTt | gCt | 2868 | 2868 | AY.120.1 | 0.920706 |
ORF7a | 82 | V82A | gTt | gCt | 2798 | 2798 | AY.5.3 | 0.943995 |
ORF7a | 82 | V82A | gTt | gCt | 2789 | 2791 | AY.106 | 0.934025 |
ORF7a | 82 | V82A | gTT | gCG | 2 | 2791 | AY.106 | 0.00067 |
ORF7a | 82 | V82A | gTt | gCt | 2671 | 2671 | AY.2 | 0.951211 |
ORF7a | 82 | V82A | gTt | gCt | 2529 | 2529 | AY.63 | 0.978337 |
ORF7a | 82 | V82A | gTt | gCt | 2488 | 2488 | AY.12 | 0.786346 |
ORF7a | 82 | V82A | gTt | gCt | 2422 | 2422 | AY.1 | 0.958449 |
ORF7a | 82 | V82A | gTt | gCt | 2388 | 2388 | AY.23.1 | 0.996661 |
ORF7a | 82 | V82A | gTt | gCt | 2383 | 2383 | AY.30 | 0.943015 |
ORF7a | 82 | V82A | gTt | gCt | 2364 | 2364 | AY.4.4 | 0.967267 |
ORF7a | 82 | V82A | gTt | gCt | 2350 | 2351 | AY.16 | 0.892179 |
ORF7a | 82 | V82A | gTT | gCC | 1 | 2351 | AY.16 | 0.00038 |
ORF7a | 82 | V82A | gTt | gCt | 2202 | 2202 | AY.62 | 0.959477 |
ORF7a | 82 | V82A | gTt | gCt | 2188 | 2188 | AY.24 | 0.943103 |
ORF7a | 82 | V82A | gTt | gCt | 2149 | 2149 | AY.94 | 0.951306 |
ORF7a | 82 | V82A | gTt | gCt | 2143 | 2143 | AY.85 | 0.915421 |
ORF7a | 82 | V82A | gTt | gCt | 1971 | 1971 | AY.107 | 0.918453 |
ORF7a | 82 | V82A | gTt | gCt | 1922 | 1922 | AY.120.2.1 | 0.957648 |
ORF7a | 82 | V82A | gTt | gCt | 1917 | 1917 | AY.34.1 | 0.977562 |
ORF7a | 82 | V82A | gTt | gCt | 1876 | 1876 | AY.101 | 0.920059 |
ORF7a | 82 | V82A | gTt | gCt | 1873 | 1873 | AY.38 | 0.935097 |
ORF7a | 82 | V82del | GTT | --- | 1860 | 1860 | AY.4 | 0.002895 |
ORF7a | 82 | V82A | gTt | gCt | 1857 | 1857 | AY.67 | 0.862117 |
ORF7a | 82 | V82A | gTt | gCt | 1846 | 1846 | AY.84 | 0.807524 |
ORF7a | 82 | V82A | gTt | gCt | 1816 | 1816 | AY.71 | 0.862708 |
ORF7a | 82 | V82A | gTt | gCt | 1793 | 1793 | AY.10 | 0.950185 |
ORF7a | 82 | V82A | gTt | gCt | 1744 | 1744 | AY.48 | 0.811163 |
ORF7a | 82 | V82A | gTt | gCt | 1741 | 1741 | AY.32 | 0.92705 |
ORF7a | 82 | V82A | gTt | gCt | 1726 | 1726 | AY.59 | 0.914195 |
ORF7a | 82 | V82A | gTt | gCt | 1620 | 1620 | AY.8 | 0.981818 |
ORF7a | 82 | V82A | gTt | gCt | 1604 | 1604 | AY.7.2 | 0.897092 |
ORF7a | 82 | V82A | gTt | gCt | 1555 | 1556 | AY.64 | 0.925595 |
ORF7a | 82 | V82A | gTT | gCG | 1 | 1556 | AY.64 | 0.000595 |
ORF7a | 82 | V82A | gTt | gCt | 1504 | 1504 | AY.46.2 | 0.955527 |
ORF7a | 82 | V82A | gTt | gCt | 1500 | 1502 | AY.57 | 0.984252 |
ORF7a | 82 | V82A | gTT | gCC | 2 | 1502 | AY.57 | 0.001312 |
ORF7a | 82 | V82A | gTt | gCt | 1474 | 1474 | AY.73 | 0.980705 |
ORF7a | 82 | V82A | gTt | gCt | 1452 | 1452 | AY.105 | 0.933762 |
ORF7a | 82 | V82A | gTt | gCt | 1444 | 1444 | AY.65 | 0.769723 |
ORF7a | 82 | V82A | gTt | gCt | 1424 | 1424 | AY.90 | 0.974675 |
ORF7a | 82 | V82A | gTt | gCt | 1344 | 1344 | AY.4.1 | 0.99115 |
ORF7a | 82 | V82A | gTt | gCt | 1319 | 1319 | AY.39.1.1 | 0.955797 |
ORF7a | 82 | V82A | gTt | gCt | 1276 | 1276 | AY.91 | 0.932067 |
ORF7a | 82 | V82A | gTt | gCt | 1225 | 1225 | AY.50 | 0.979217 |
ORF7a | 82 | V82A | gTt | gCt | 1176 | 1176 | AY.86 | 0.975934 |
ORF7a | 82 | V82A | gTt | gCt | 1155 | 1155 | AY.4.3 | 0.972222 |
ORF7a | 82 | V82A | gTt | gCt | 1122 | 1122 | AY.87 | 0.934221 |
ORF7a | 82 | V82A | gTt | gCt | 1098 | 1098 | AY.95 | 0.835616 |
ORF7a | 82 | V82A | gTt | gCt | 1085 | 1085 | AY.109 | 0.802515 |
ORF7a | 82 | V82del | GTT | --- | 1081 | 1081 | B.1.1.7 | 0.000968 |
ORF7a | 82 | V82A | gTt | gCt | 1017 | 1017 | AY.46.3 | 0.94958 |
ORF7a | 82 | V82A | gTt | gCt | 1010 | 1010 | AY.60 | 0.947467 |
ORF7a | 82 | V82A | gTt | gCt | 1005 | 1005 | AY.51 | 0.913636 |
ORF7a | 82 | V82A | gTt | gCt | 993 | 993 | AY.58 | 0.901089 |
ORF7a | 82 | V82S | GTt | TCt | 930 | 935 | All | 0.000178 |
ORF7a | 82 | V82S | GTt | AGt | 4 | 935 | All | 0.000001 |
ORF7a | 82 | V82S | GTT | AGC | 1 | 935 | All | 0 |
ORF7a | 82 | V82A | gTt | gCt | 922 | 922 | AY.55 | 0.845872 |
ORF7a | 82 | V82A | gTt | gCt | 912 | 912 | AY.16.1 | 0.428571 |
ORF7a | 82 | V82A | gTt | gCt | 910 | 910 | AY.88 | 0.804598 |
ORF7a | 82 | V82A | gTt | gCt | 871 | 871 | AY.108 | 0.960309 |
ORF7a | 82 | V82A | gTt | gCt | 859 | 859 | AY.40 | 0.828351 |
ORF7a | 82 | V82A | gTt | gCt | 835 | 835 | AY.52 | 0.679967 |
ORF7a | 82 | V82A | gTt | gCt | 825 | 825 | AY.99 | 0.865687 |
ORF7a | 82 | V82A | gTt | gCt | 808 | 808 | AY.79 | 0.978208 |
ORF7a | 82 | V82F | Gtt | Ttt | 793 | 793 | All | 0.000152 |
ORF7a | 82 | V82A | gTt | gCt | 792 | 792 | AY.77 | 0.892897 |
ORF7a | 82 | V82A | gTt | gCt | 788 | 788 | AY.46.1 | 0.809035 |
ORF7a | 82 | V82A | gTt | gCt | 770 | 770 | AY.66 | 0.823529 |
ORF7a | 82 | V82A | gTt | gCt | 731 | 731 | AY.11 | 0.978581 |
ORF7a | 82 | V82A | gTt | gCt | 716 | 716 | AY.72 | 0.97415 |
ORF7a | 82 | V82A | gTt | gCt | 708 | 708 | AY.120.2 | 0.910026 |
ORF7a | 82 | V82A | gTt | gCt | 692 | 692 | AY.19 | 0.789054 |
ORF7a | 82 | V82A | gTt | gCt | 628 | 628 | AY.78 | 0.967643 |
ORF7a | 82 | V82A | gTt | gCt | 623 | 623 | AY.99.1 | 0.967391 |
ORF7a | 82 | V82A | gTt | gCt | 617 | 617 | AY.39.2 | 0.950693 |
ORF7a | 82 | V82A | gTt | gCt | 616 | 616 | AY.82 | 0.835821 |
ORF7a | 82 | V82F | Gtt | Ttt | 578 | 578 | B.1.1.7 | 0.000517 |
ORF7a | 82 | V82T | GTt | ACt | 569 | 571 | All | 0.000109 |
ORF7a | 82 | V82T | GTT | ACA | 1 | 571 | All | 0 |
ORF7a | 82 | V82T | GTT | ACC | 1 | 571 | All | 0 |
ORF7a | 82 | V82A | gTt | gCt | 570 | 570 | AY.56 | 0.914928 |
ORF7a | 82 | V82A | gTt | gCt | 557 | 557 | AY.97 | 0.947279 |
ORF7a | 82 | V82A | gTt | gCt | 529 | 529 | AY.28 | 1 |
ORF7a | 82 | V82A | gTt | gCt | 505 | 505 | AY.9.2.1 | 0.998024 |
ORF7a | 82 | V82A | gTt | gCt | 503 | 503 | AY.21 | 0.954459 |
ORF7a | 82 | V82A | gTt | gCt | 500 | 500 | B.1 | 0.00458 |
ORF7a | 82 | V82A | gTt | gCt | 464 | 464 | AY.22 | 0.970711 |
ORF7a | 82 | V82A | gTt | gCt | 463 | 463 | AY.80 | 0.522573 |
ORF7a | 82 | V82A | gTt | gCt | 458 | 458 | AY.81 | 0.912351 |
ORF7a | 82 | V82A | gTt | gCt | 457 | 457 | AY.83 | 0.787931 |
ORF7a | 82 | V82A | gTt | gCt | 446 | 446 | AY.15 | 0.991111 |
ORF7a | 82 | V82A | gTt | gCt | 435 | 435 | AY.104 | 0.863095 |
ORF7a | 82 | V82A | gTt | gCt | 382 | 382 | AY.5.2 | 0.940887 |
ORF7a | 82 | V82del | GTT | --- | 379 | 379 | AY.4.2 | 0.00822 |
ORF7a | 82 | V82V | gtT | gtC | 315 | 335 | All | 0.00006 |
ORF7a | 82 | V82V | gtT | gtG | 12 | 335 | All | 0.000002 |
ORF7a | 82 | V82V | gtT | gtA | 8 | 335 | All | 0.000002 |
ORF7a | 82 | V82del1 | Gtt | -tt | 263 | 326 | All | 0.00005 |
ORF7a | 82 | V82del1 | gTt | g-t | 20 | 326 | All | 0.000004 |
ORF7a | 82 | V82del1 | gTT | gC- | 17 | 326 | All | 0.000003 |
ORF7a | 82 | V82del1 | gtT | gt- | 11 | 326 | All | 0.000002 |
ORF7a | 82 | V82del1 | GTt | -Ct | 7 | 326 | All | 0.000001 |
ORF7a | 82 | V82del1 | gTT | g-C | 2 | 326 | All | 0 |
ORF7a | 82 | V82del1 | GTT | -NN | 2 | 326 | All | 0 |
ORF7a | 82 | V82del1 | GTT | -CA | 2 | 326 | All | 0 |
ORF7a | 82 | V82del1 | GtT | -tA | 1 | 326 | All | 0 |
ORF7a | 82 | V82del1 | GtT | -tN | 1 | 326 | All | 0 |
ORF7a | 82 | V82T | GTt | ACt | 306 | 306 | AY.4 | 0.000476 |
ORF7a | 82 | V82A | gTt | gCt | 295 | 295 | B.1.617.3 | 0.880597 |
ORF7a | 82 | V82A | gTt | gCt | 271 | 271 | AY.96 | 0.562241 |
ORF7a | 82 | V82A | gTt | gCt | 254 | 254 | AY.5.1 | 0.954887 |
ORF7a | 82 | V82S | GTt | TCt | 251 | 252 | AY.4 | 0.000391 |
ORF7a | 82 | V82S | GTt | AGt | 1 | 252 | AY.4 | 0.000002 |
ORF7a | 82 | V82A | gTt | gCt | 234 | 234 | AY.91.1 | 0.95122 |
ORF7a | 82 | V82del2 | GTt | --t | 185 | 226 | All | 0.000035 |
ORF7a | 82 | V82del2 | gTT | g-- | 22 | 226 | All | 0.000004 |
ORF7a | 82 | V82del2 | GTT | --N | 19 | 226 | All | 0.000004 |
ORF7a | 82 | V82del | GTT | --- | 225 | 225 | AY.103 | 0.001397 |
ORF7a | 82 | V82del | GTT | --- | 215 | 215 | B.1.617.2 | 0.00081 |
ORF7a | 82 | V82A | gTt | gCt | 207 | 207 | AY.49 | 0.661342 |
ORF7a | 82 | V82A | gTt | gCt | 202 | 202 | AY.76 | 0.975845 |
ORF7a | 82 | V82A | gTt | gCt | 196 | 196 | AY.89 | 0.960784 |
ORF7a | 82 | V82del | GTT | --- | 179 | 179 | B.1.177.21 | 0.013688 |
ORF7a | 82 | V82V | gtT | gtC | 168 | 168 | B.1.177.52 | 0.295255 |
ORF7a | 82 | V82del | GTT | --- | 167 | 167 | AY.39 | 0.004127 |
ORF7a | 82 | V82I | Gtt | Att | 160 | 164 | All | 0.000031 |
ORF7a | 82 | V82I | GtT | AtA | 4 | 164 | All | 0.000001 |
ORF7a | 82 | V82del | GTT | --- | 138 | 138 | AY.44 | 0.00084 |
ORF7a | 82 | V82del | GTT | --- | 128 | 128 | AY.43 | 0.000567 |
ORF7a | 82 | V82A | gTt | gCt | 122 | 122 | AY.115 | 0.635417 |
ORF7a | 82 | V82A | gTt | gCt | 120 | 121 | B.1.1.7 | 0.000107 |
ORF7a | 82 | V82A | gTT | gCC | 1 | 121 | B.1.1.7 | 0.000001 |
ORF7a | 82 | V82S | GTt | TCt | 121 | 121 | B.1.617.2 | 0.000456 |
ORF7a | 82 | V82del | GTT | --- | 112 | 112 | AY.100 | 0.005153 |
ORF7a | 82 | V82del | GTT | --- | 112 | 112 | AY.29 | 0.001767 |
ORF7a | 82 | V82D | gTt | gAt | 107 | 108 | All | 0.00002 |
ORF7a | 82 | V82D | gTT | gAC | 1 | 108 | All | 0 |
ORF7a | 82 | V82S | GTt | TCt | 101 | 101 | AY.26 | 0.002859 |
ORF7a | 82 | V82del1 | Gtt | -tt | 90 | 100 | AY.4 | 0.00014 |
ORF7a | 82 | V82del1 | gTT | gC- | 5 | 100 | AY.4 | 0.000008 |
ORF7a | 82 | V82del1 | GTt | -Ct | 5 | 100 | AY.4 | 0.000008 |
ORF7a | 82 | V82A | gTt | gCt | 99 | 99 | AY.18 | 1 |
ORF7a | 82 | V82del | GTT | --- | 96 | 96 | AY.3 | 0.000955 |
ORF7a | 82 | V82S | GTt | TCt | 89 | 89 | AY.44 | 0.000542 |
ORF7a | 82 | V82A | gTt | gCt | 83 | 83 | AY.17 | 0.680328 |
ORF7a | 82 | V82del1 | Gtt | -tt | 70 | 78 | B.1.1.7 | 0.000063 |
ORF7a | 82 | V82del1 | gTt | g-t | 5 | 78 | B.1.1.7 | 0.000004 |
ORF7a | 82 | V82del1 | gtT | gt- | 3 | 78 | B.1.1.7 | 0.000003 |
ORF7a | 82 | V82del | GTT | --- | 76 | 76 | AY.42 | 0.003057 |
ORF7a | 82 | V82del | GTT | --- | 72 | 72 | AY.25 | 0.000433 |
ORF7a | 82 | V82S | GTt | TCt | 72 | 72 | AY.43 | 0.000319 |
ORF7a | 82 | V82del2 | GTt | --t | 56 | 70 | AY.4 | 0.000087 |
ORF7a | 82 | V82del2 | GTT | --N | 14 | 70 | AY.4 | 0.000022 |
ORF7a | 82 | V82del | GTT | --- | 70 | 70 | AY.98 | 0.00553 |
ORF7a | 82 | V82del | GTT | --- | 55 | 55 | AY.120 | 0.002045 |
ORF7a | 82 | V82del | GTT | --- | 55 | 55 | B.1.177 | 0.000724 |
ORF7a | 82 | V82del | GTT | --- | 55 | 55 | B.1.2 | 0.000484 |
ORF7a | 82 | V82T | GTt | ACt | 54 | 54 | AY.37 | 0.017067 |
ORF7a | 82 | V82A | gTt | gCt | 52 | 52 | AY.31 | 0.962963 |
ORF7a | 82 | V82del1 | Gtt | -tt | 51 | 51 | AY.26 | 0.001444 |
ORF7a | 82 | V82del | GTT | --- | 51 | 51 | B.1.526 | 0.001199 |
ORF7a | 82 | V82T | GTt | ACt | 49 | 49 | AY.44 | 0.000298 |
ORF7a | 82 | V82A | gTt | gCt | 49 | 49 | B.1.214 | 0.179487 |
ORF7a | 82 | V82F | Gtt | Ttt | 48 | 48 | B.1.2 | 0.000423 |
ORF7a | 82 | V82T | GTt | ACt | 44 | 44 | B.1.617.2 | 0.000166 |
ORF7a | 82 | V82V | gtT | gtC | 43 | 43 | B.1.177.81 | 0.008141 |
ORF7a | 82 | V82F | Gtt | Ttt | 41 | 41 | B.1.609 | 0.019655 |
ORF7a | 82 | V82del | GTT | --- | 40 | 40 | AY.26 | 0.001132 |
ORF7a | 82 | V82del | GTT | --- | 40 | 40 | B.1.1.284 | 0.004296 |
ORF7a | 82 | V82S | GTt | TCt | 39 | 39 | AY.103 | 0.000242 |
ORF7a | 82 | V82A | gTt | gCt | 39 | 39 | B.1.1 | 0.000707 |
ORF7a | 82 | V82del | GTT | --- | 37 | 37 | B.1.621 | 0.003275 |
ORF7a | 82 | V82F | Gtt | Ttt | 36 | 36 | B.1.177 | 0.000474 |
ORF7a | 82 | V82D | gTt | gAt | 35 | 35 | B.1.177.21 | 0.002676 |
ORF7a | 82 | V82P | GTt | CCt | 34 | 34 | All | 0.000007 |
ORF7a | 82 | V82del | GTT | --- | 34 | 34 | B.1 | 0.000311 |
ORF7a | 82 | V82del | GTT | --- | 33 | 33 | AY.3.1 | 0.002814 |
ORF7a | 82 | V82I | Gtt | Att | 33 | 33 | B.1.1.7 | 0.00003 |
ORF7a | 82 | V82del | GTT | --- | 32 | 32 | P.1 | 0.000504 |
ORF7a | 82 | V82S | GTt | TCt | 31 | 31 | AY.102 | 0.000822 |
ORF7a | 82 | V82S | GTt | TCt | 31 | 31 | AY.14 | 0.002728 |
ORF7a | 82 | V82del | GTT | --- | 31 | 31 | AY.46.6 | 0.002238 |
ORF7a | 82 | V82del | GTT | --- | 30 | 30 | AY.119 | 0.001059 |
ORF7a | 82 | V82S | GTt | TCt | 28 | 28 | AY.27 | 0.001812 |
ORF7a | 82 | V82V | gtT | gtC | 28 | 28 | B.1.160 | 0.000873 |
ORF7a | 82 | V82A | gTt | gCt | 27 | 27 | B | 0.003451 |
ORF7a | 82 | V82del | GTT | --- | 26 | 26 | AY.36 | 0.003854 |
ORF7a | 82 | V82V | gtT | gtC | 21 | 26 | B.1.1.7 | 0.000019 |
ORF7a | 82 | V82V | gtT | gtG | 3 | 26 | B.1.1.7 | 0.000003 |
ORF7a | 82 | V82V | gtT | gtA | 2 | 26 | B.1.1.7 | 0.000002 |
ORF7a | 82 | V82del | GTT | --- | 25 | 25 | B.1.1.214 | 0.001386 |
ORF7a | 82 | V82del | GTT | --- | 24 | 24 | AY.7.2 | 0.013423 |
ORF7a | 82 | V82T | GTt | ACt | 23 | 23 | AY.103 | 0.000143 |
ORF7a | 82 | V82del | GTT | --- | 23 | 23 | AY.6 | 0.000946 |
ORF7a | 82 | V82T | GTt | ACt | 22 | 22 | AY.119 | 0.000777 |
ORF7a | 82 | V82I | Gtt | Att | 22 | 22 | AY.26 | 0.000623 |
ORF7a | 82 | V82del2 | GTt | --t | 21 | 22 | B.1.1.7 | 0.000019 |
ORF7a | 82 | V82del2 | gTT | g-- | 1 | 22 | B.1.1.7 | 0.000001 |
ORF7a | 82 | V82del | GTT | --- | 22 | 22 | B.1.637 | 0.001608 |
ORF7a | 82 | V82L | Gtt | Ctt | 21 | 21 | All | 0.000004 |
ORF7a | 82 | V82G | gTt | gGt | 20 | 21 | All | 0.000004 |
ORF7a | 82 | V82G | gTT | gGC | 1 | 21 | All | 0 |
ORF7a | 82 | V82del | GTT | --- | 21 | 21 | AY.5 | 0.000434 |
ORF7a | 82 | V82del | GTT | --- | 21 | 21 | AY.75 | 0.001176 |
ORF7a | 82 | V82del | GTT | --- | 20 | 20 | AY.20 | 0.000777 |
ORF7a | 82 | V82del | GTT | --- | 20 | 20 | AY.47 | 0.000622 |
ORF7a | 82 | V82del | GTT | --- | 20 | 20 | B.1.351 | 0.000595 |
ORF7a | 82 | V82A | gTt | gCt | 20 | 20 | B.1.351 | 0.000595 |
ORF7a | 82 | V82P | GTt | CCt | 19 | 19 | AY.103 | 0.000118 |
ORF7a | 82 | V82del | GTT | --- | 19 | 19 | AY.46.4 | 0.003126 |
ORF7a | 82 | V82del | GTT | --- | 19 | 19 | AY.98.1 | 0.00092 |
ORF7a | 82 | V82T | GTt | ACt | 16 | 16 | AY.120 | 0.000595 |
ORF7a | 82 | V82del | GTT | --- | 16 | 16 | B.1.160 | 0.000499 |
ORF7a | 82 | V82del | GTT | --- | 16 | 16 | B.1.429 | 0.000376 |
ORF7a | 82 | V82del | GTT | --- | 16 | 16 | B.1.525 | 0.001811 |
ORF7a | 82 | V82I | Gtt | Att | 15 | 15 | AY.116 | 0.004302 |
ORF7a | 82 | V82del | GTT | --- | 15 | 15 | AY.117 | 0.001268 |
ORF7a | 82 | V82del | GTT | --- | 15 | 15 | AY.30 | 0.005936 |
ORF7a | 82 | V82del | GTT | --- | 14 | 14 | B.1.1.258 | 0.045603 |
ORF7a | 82 | V82del | GTT | --- | 13 | 13 | AY.23 | 0.000907 |
ORF7a | 82 | V82del2 | gTT | g-- | 13 | 13 | AY.29 | 0.000205 |
ORF7a | 82 | V82S | GTt | TCt | 13 | 13 | AY.39 | 0.000321 |
ORF7a | 82 | V82T | GTt | ACt | 12 | 12 | AY.102 | 0.000318 |
ORF7a | 82 | V82D | gTt | gAt | 12 | 12 | AY.25 | 0.000072 |
ORF7a | 82 | V82A | gTt | gCt | 12 | 12 | B.1.177 | 0.000158 |
ORF7a | 82 | V82del | GTT | --- | 12 | 12 | B.1.324 | 0.019262 |
ORF7a | 82 | V82del | GTT | --- | 12 | 12 | C.37 | 0.001393 |
ORF7a | 82 | V82A | gTt | gCt | 12 | 12 | P.1 | 0.000189 |
ORF7a | 82 | V82del | GTT | --- | 12 | 12 | R.1 | 0.00108 |
ORF7a | 82 | V82del | GTT | --- | 11 | 11 | AY.110 | 0.00124 |
ORF7a | 82 | V82del | GTT | --- | 11 | 11 | AY.121 | 0.001488 |
ORF7a | 82 | V82S | GTt | TCt | 11 | 11 | AY.20 | 0.000428 |
ORF7a | 82 | V82D | gTt | gAt | 11 | 11 | AY.39 | 0.000272 |
ORF7a | 82 | V82I | Gtt | Att | 11 | 11 | AY.39.1 | 0.000436 |
ORF7a | 82 | V82D | gTt | gAt | 11 | 11 | AY.44 | 0.000067 |
ORF7a | 82 | V82del | GTT | --- | 11 | 11 | AY.71 | 0.005226 |
ORF7a | 82 | V82del | GTT | --- | 11 | 11 | B.1.1 | 0.0002 |
ORF7a | 82 | V82A | gTt | gCt | 11 | 11 | B.1.621 | 0.000974 |
ORF7a | 82 | V82del | GTT | --- | 11 | 11 | N.7 | 0.323529 |
ORF7a | 82 | V82del2 | GTt | --t | 10 | 10 | AY.20 | 0.000389 |
ORF7a | 82 | V82del2 | GTt | --t | 10 | 10 | AY.3 | 0.000099 |
ORF7a | 82 | V82del | GTT | --- | 10 | 10 | AY.9 | 0.000676 |
ORF7a | 82 | V82A | gTt | gCt | 10 | 10 | B.1.619.1 | 0.006414 |
ORF7a | 82 | V82del | GTT | --- | 10 | 10 | Q.8 | 0.001649 |
ORF7a | 82 | V82N | GTt | AAt | 8 | 9 | All | 0.000002 |
ORF7a | 82 | V82N | GTT | AAC | 1 | 9 | All | 0 |
ORF7a | 82 | V82del | GTT | --- | 9 | 9 | AY.118 | 0.000564 |
ORF7a | 82 | V82del2 | GTt | --t | 8 | 9 | AY.39 | 0.000198 |
ORF7a | 82 | V82del2 | GTT | --N | 1 | 9 | AY.39 | 0.000025 |
ORF7a | 82 | V82del | GTT | --- | 9 | 9 | AY.39.1 | 0.000357 |
ORF7a | 82 | V82S | GTt | TCt | 9 | 9 | AY.5.3 | 0.003036 |
ORF7a | 82 | V82A | gTt | gCt | 9 | 9 | B.1.177.73 | 0.005096 |
ORF7a | 82 | V82del | GTT | --- | 9 | 9 | B.1.596 | 0.000784 |
ORF7a | 82 | V82A | gTt | gCt | 9 | 9 | B.1.596 | 0.000784 |
ORF7a | 82 | V82del | GTT | --- | 9 | 9 | L.1 | 0.017143 |
ORF7a | 82 | V82del1 | gTT | gC- | 7 | 8 | AY.103 | 0.000043 |
ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 8 | AY.103 | 0.000006 |
ORF7a | 82 | V82del1 | Gtt | -tt | 8 | 8 | AY.116 | 0.002294 |
ORF7a | 82 | V82S | GTt | TCt | 8 | 8 | AY.119 | 0.000282 |
ORF7a | 82 | V82S | GTt | TCt | 8 | 8 | AY.4.2 | 0.000174 |
ORF7a | 82 | V82del2 | GTt | --t | 6 | 8 | AY.43 | 0.000027 |
ORF7a | 82 | V82del2 | gTT | g-- | 1 | 8 | AY.43 | 0.000004 |
ORF7a | 82 | V82del2 | GTT | --N | 1 | 8 | AY.43 | 0.000004 |
ORF7a | 82 | V82del2 | GTt | --t | 5 | 8 | AY.44 | 0.00003 |
ORF7a | 82 | V82del2 | gTT | g-- | 3 | 8 | AY.44 | 0.000018 |
ORF7a | 82 | V82del | GTT | --- | 8 | 8 | AY.99.2 | 0.000737 |
ORF7a | 82 | V82F | Gtt | Ttt | 8 | 8 | B.1 | 0.000073 |
ORF7a | 82 | V82del | GTT | --- | 8 | 8 | B.1.1.231 | 0.024768 |
ORF7a | 82 | V82A | gTt | gCt | 8 | 8 | B.1.2 | 0.00007 |
ORF7a | 82 | V82S | GTt | TCt | 5 | 7 | AY.100 | 0.00023 |
ORF7a | 82 | V82S | GTt | AGt | 1 | 7 | AY.100 | 0.000046 |
ORF7a | 82 | V82S | GTT | AGC | 1 | 7 | AY.100 | 0.000046 |
ORF7a | 82 | V82S | GTt | TCt | 7 | 7 | AY.106 | 0.002344 |
ORF7a | 82 | V82T | GTt | ACt | 7 | 7 | AY.25 | 0.000042 |
ORF7a | 82 | V82del | GTT | --- | 7 | 7 | AY.35 | 0.001631 |
ORF7a | 82 | V82G | gTt | gGt | 7 | 7 | AY.44 | 0.000043 |
ORF7a | 82 | V82del2 | GTt | --t | 7 | 7 | AY.47 | 0.000218 |
ORF7a | 82 | V82del | GTT | --- | 7 | 7 | AY.9.2 | 0.000257 |
ORF7a | 82 | V82A | gTt | gCt | 7 | 7 | B.1.160 | 0.000218 |
ORF7a | 82 | V82A | gTt | gCt | 7 | 7 | B.1.628 | 0.002467 |
ORF7a | 82 | V82F | Gtt | Ttt | 7 | 7 | P.1 | 0.00011 |
ORF7a | 82 | V82H | GTt | CAt | 6 | 6 | All | 0.000001 |
ORF7a | 82 | V82del2 | GTt | --t | 6 | 6 | AY.103 | 0.000037 |
ORF7a | 82 | V82D | gTt | gAt | 6 | 6 | AY.120 | 0.000223 |
ORF7a | 82 | V82L | Gtt | Ctt | 6 | 6 | AY.3 | 0.00006 |
ORF7a | 82 | V82del | GTT | --- | 6 | 6 | AY.33 | 0.000401 |
ORF7a | 82 | V82del | GTT | --- | 6 | 6 | AY.34 | 0.000582 |
ORF7a | 82 | V82del1 | Gtt | -tt | 6 | 6 | AY.4.2 | 0.00013 |
ORF7a | 82 | V82del1 | GTT | -CA | 2 | 6 | AY.43 | 0.000009 |
ORF7a | 82 | V82del1 | GTT | -NN | 1 | 6 | AY.43 | 0.000004 |
ORF7a | 82 | V82del1 | GtT | -tA | 1 | 6 | AY.43 | 0.000004 |
ORF7a | 82 | V82del1 | gTt | g-t | 1 | 6 | AY.43 | 0.000004 |
ORF7a | 82 | V82del1 | gTT | gC- | 1 | 6 | AY.43 | 0.000004 |
ORF7a | 82 | V82del | GTT | --- | 6 | 6 | AY.45 | 0.00073 |
ORF7a | 82 | V82del | GTT | --- | 6 | 6 | AY.54 | 0.000572 |
ORF7a | 82 | V82S | GTt | TCt | 6 | 6 | AY.69 | 0.00112 |
ORF7a | 82 | V82S | GTt | TCt | 6 | 6 | AY.9.1 | 0.000502 |
ORF7a | 82 | V82I | Gtt | Att | 6 | 6 | B.1 | 0.000055 |
ORF7a | 82 | V82del | GTT | --- | 6 | 6 | B.1.1.519 | 0.000238 |
ORF7a | 82 | V82N | GTt | AAt | 6 | 6 | B.1.1.7 | 0.000005 |
ORF7a | 82 | V82H | GTt | CAt | 6 | 6 | B.1.1.7 | 0.000005 |
ORF7a | 82 | V82I | Gtt | Att | 6 | 6 | B.1.234 | 0.000792 |
ORF7a | 82 | V82V | gtT | gtC | 6 | 6 | B.1.427 | 0.000303 |
ORF7a | 82 | V82A | gTt | gCt | 6 | 6 | B.1.576 | 0.00544 |
ORF7a | 82 | V82del2 | GTt | --t | 6 | 6 | B.1.617.2 | 0.000023 |
ORF7a | 82 | V82D | gTt | gAt | 6 | 6 | B.1.617.2 | 0.000023 |
ORF7a | 82 | V82del | GTT | --- | 6 | 6 | P.1.15 | 0.001394 |
ORF7a | 82 | V82del | GTT | --- | 5 | 5 | AY.106 | 0.001674 |
ORF7a | 82 | V82del | GTT | --- | 5 | 5 | AY.114 | 0.001156 |
ORF7a | 82 | V82del2 | GTt | --t | 5 | 5 | AY.116 | 0.001434 |
ORF7a | 82 | V82S | GTt | TCt | 5 | 5 | AY.25 | 0.00003 |
ORF7a | 82 | V82del1 | gTt | g-t | 3 | 5 | AY.39 | 0.000074 |
ORF7a | 82 | V82del1 | Gtt | -tt | 2 | 5 | AY.39 | 0.000049 |
ORF7a | 82 | V82S | GTt | TCt | 5 | 5 | AY.5 | 0.000103 |
ORF7a | 82 | V82del | GTT | --- | 5 | 5 | AY.80 | 0.005643 |
ORF7a | 82 | V82V | gtT | gtC | 4 | 5 | B.1 | 0.000037 |
ORF7a | 82 | V82V | gtT | gtG | 1 | 5 | B.1 | 0.000009 |
ORF7a | 82 | V82I | Gtt | Att | 5 | 5 | B.1.1 | 0.000091 |
ORF7a | 82 | V82F | Gtt | Ttt | 5 | 5 | B.1.1 | 0.000091 |
ORF7a | 82 | V82F | Gtt | Ttt | 5 | 5 | B.1.1.306 | 0.002192 |
ORF7a | 82 | V82A | gTt | gCt | 5 | 5 | B.1.1.317 | 0.002058 |
ORF7a | 82 | V82V | gtT | gtC | 5 | 5 | B.1.1.519 | 0.000199 |
ORF7a | 82 | V82L | Gtt | Ctt | 5 | 5 | B.1.1.7 | 0.000004 |
ORF7a | 82 | V82F | Gtt | Ttt | 5 | 5 | B.1.351 | 0.000149 |
ORF7a | 82 | V82del | GTT | --- | 5 | 5 | B.1.375 | 0.004098 |
ORF7a | 82 | V82del | GTT | --- | 5 | 5 | B.1.427 | 0.000252 |
ORF7a | 82 | V82A | gTt | gCt | 5 | 5 | B.1.623 | 0.002682 |
ORF7a | 82 | V82del1 | Gtt | -tt | 5 | 5 | B.1.70 | 0.121951 |
ORF7a | 82 | V82F | Gtt | Ttt | 5 | 5 | P.1.14 | 0.000239 |
ORF7a | 82 | V82del | GTT | --- | 5 | 5 | Q.1 | 0.000632 |
ORF7a | 82 | V82A | gTt | gCt | 4 | 4 | A.2.5 | 0.001996 |
ORF7a | 82 | V82del | GTT | --- | 4 | 4 | AY.113 | 0.00057 |
ORF7a | 82 | V82del | GTT | --- | 4 | 4 | AY.120.1 | 0.001284 |
ORF7a | 82 | V82del | GTT | --- | 4 | 4 | AY.14 | 0.000352 |
ORF7a | 82 | V82L | Gtt | Ctt | 4 | 4 | AY.17 | 0.032787 |
ORF7a | 82 | V82S | GTt | TCt | 4 | 4 | AY.23.1 | 0.001669 |
ORF7a | 82 | V82del2 | GTt | --t | 4 | 4 | AY.25 | 0.000024 |
ORF7a | 82 | V82S | GTt | TCt | 4 | 4 | AY.29 | 0.000063 |
ORF7a | 82 | V82del | GTT | --- | 4 | 4 | AY.29.1 | 0.000882 |
ORF7a | 82 | V82S | GTt | TCt | 4 | 4 | AY.3 | 0.00004 |
ORF7a | 82 | V82D | gTt | gAt | 4 | 4 | AY.30 | 0.001583 |
ORF7a | 82 | V82V | gtT | gtC | 4 | 4 | AY.39 | 0.000099 |
ORF7a | 82 | V82P | GTt | CCt | 4 | 4 | AY.4 | 0.000006 |
ORF7a | 82 | V82del | GTT | --- | 4 | 4 | AY.4.5 | 0.00043 |
ORF7a | 82 | V82T | GTt | ACt | 4 | 4 | AY.43 | 0.000018 |
ORF7a | 82 | V82del | GTT | --- | 4 | 4 | AY.46 | 0.000416 |
ORF7a | 82 | V82S | GTt | TCt | 4 | 4 | AY.51 | 0.003636 |
ORF7a | 82 | V82del | GTT | --- | 4 | 4 | AY.61 | 0.000419 |
ORF7a | 82 | V82del | GTT | --- | 4 | 4 | AY.68 | 0.001095 |
ORF7a | 82 | V82T | GTt | ACt | 4 | 4 | AY.93 | 0.001092 |
ORF7a | 82 | V82S | GTt | TCt | 4 | 4 | AY.99.2 | 0.000369 |
ORF7a | 82 | V82del | GTT | --- | 4 | 4 | B.1.1.25 | 0.002274 |
ORF7a | 82 | V82A | gTt | gCt | 4 | 4 | B.1.1.432 | 0.005063 |
ORF7a | 82 | V82F | Gtt | Ttt | 4 | 4 | B.1.160 | 0.000125 |
ORF7a | 82 | V82I | Gtt | Att | 4 | 4 | B.1.177 | 0.000053 |
ORF7a | 82 | V82V | gtT | gtC | 4 | 4 | B.1.177 | 0.000053 |
ORF7a | 82 | V82V | gtT | gtC | 4 | 4 | B.1.177.44 | 0.002076 |
ORF7a | 82 | V82V | gtT | gtC | 2 | 4 | B.1.2 | 0.000018 |
ORF7a | 82 | V82V | gtT | gtG | 2 | 4 | B.1.2 | 0.000018 |
ORF7a | 82 | V82del | GTT | --- | 4 | 4 | B.1.243 | 0.000278 |
ORF7a | 82 | V82A | gTt | gCt | 4 | 4 | B.1.375 | 0.003279 |
ORF7a | 82 | V82F | Gtt | Ttt | 4 | 4 | B.1.526 | 0.000094 |
ORF7a | 82 | V82F | Gtt | Ttt | 4 | 4 | B.1.596 | 0.000349 |
ORF7a | 82 | V82A | gTt | gCt | 4 | 4 | B.1.637 | 0.000292 |
ORF7a | 82 | V82A | gTt | gCt | 4 | 4 | C.37 | 0.000464 |
ORF7a | 82 | V82del2 | GTt | --t | 2 | 4 | C.37 | 0.000232 |
ORF7a | 82 | V82del2 | GTT | --N | 1 | 4 | C.37 | 0.000116 |
ORF7a | 82 | V82del2 | gTT | g-- | 1 | 4 | C.37 | 0.000116 |
ORF7a | 82 | V82A | gTt | gCt | 4 | 4 | P.1.17 | 0.000647 |
ORF7a | 82 | V82A | gTt | gCt | 3 | 3 | A | 0.001161 |
ORF7a | 82 | V82del | GTT | --- | 3 | 3 | A | 0.001161 |
ORF7a | 82 | V82F | Gtt | Ttt | 3 | 3 | AE.8 | 0.001467 |
ORF7a | 82 | V82K | GTT | AAA | 3 | 3 | All | 0.000001 |
ORF7a | 82 | V82T | GTt | ACt | 2 | 3 | AY.100 | 0.000092 |
ORF7a | 82 | V82T | GTT | ACC | 1 | 3 | AY.100 | 0.000046 |
ORF7a | 82 | V82S | GTt | TCt | 3 | 3 | AY.117 | 0.000254 |
ORF7a | 82 | V82del | GTT | --- | 3 | 3 | AY.12 | 0.000948 |
ORF7a | 82 | V82I | Gtt | Att | 2 | 3 | AY.120 | 0.000074 |
ORF7a | 82 | V82I | GtT | AtA | 1 | 3 | AY.120 | 0.000037 |
ORF7a | 82 | V82del | GTT | --- | 3 | 3 | AY.13 | 0.000483 |
ORF7a | 82 | V82del | GTT | --- | 3 | 3 | AY.24 | 0.001293 |
ORF7a | 82 | V82del2 | GTt | --t | 3 | 3 | AY.29.1 | 0.000662 |
ORF7a | 82 | V82del1 | gTT | gC- | 1 | 3 | AY.3 | 0.00001 |
ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 3 | AY.3 | 0.00001 |
ORF7a | 82 | V82del1 | GTt | -Ct | 1 | 3 | AY.3 | 0.00001 |
ORF7a | 82 | V82del | GTT | --- | 3 | 3 | AY.37 | 0.000948 |
ORF7a | 82 | V82S | GTt | TCt | 3 | 3 | AY.4.5 | 0.000322 |
ORF7a | 82 | V82del1 | gTT | gC- | 2 | 3 | AY.44 | 0.000012 |
ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 3 | AY.44 | 0.000006 |
ORF7a | 82 | V82S | GTt | TCt | 3 | 3 | AY.45 | 0.000365 |
ORF7a | 82 | V82D | gTt | gAt | 3 | 3 | AY.47 | 0.000093 |
ORF7a | 82 | V82S | GTt | TCt | 3 | 3 | AY.47 | 0.000093 |
ORF7a | 82 | V82del2 | GTt | --t | 3 | 3 | AY.5 | 0.000062 |
ORF7a | 82 | V82T | GTt | ACt | 3 | 3 | AY.5.4 | 0.00083 |
ORF7a | 82 | V82S | GTt | TCt | 3 | 3 | AY.5.4 | 0.00083 |
ORF7a | 82 | V82del | GTT | --- | 3 | 3 | AY.53 | 0.000863 |
ORF7a | 82 | V82del | GTT | --- | 3 | 3 | AY.7 | 0.000588 |
ORF7a | 82 | V82del | GTT | --- | 3 | 3 | AY.7.1 | 0.000338 |
ORF7a | 82 | V82del | GTT | --- | 3 | 3 | AY.88 | 0.002653 |
ORF7a | 82 | V82S | GTt | TCt | 3 | 3 | AY.98 | 0.000237 |
ORF7a | 82 | V82A | gTt | gCt | 3 | 3 | AZ.2 | 0.002463 |
ORF7a | 82 | V82D | gTt | gAt | 3 | 3 | B.1 | 0.000027 |
ORF7a | 82 | V82del1 | Gtt | -tt | 3 | 3 | B.1.1 | 0.000054 |
ORF7a | 82 | V82del | GTT | --- | 3 | 3 | B.1.1.121 | 0.007282 |
ORF7a | 82 | V82del | GTT | --- | 3 | 3 | B.1.1.170 | 0.003741 |
ORF7a | 82 | V82F | Gtt | Ttt | 3 | 3 | B.1.1.519 | 0.000119 |
ORF7a | 82 | V82del | GTT | --- | 3 | 3 | B.1.214.2 | 0.001799 |
ORF7a | 82 | V82del | GTT | --- | 3 | 3 | B.1.234 | 0.000396 |
ORF7a | 82 | V82I | Gtt | Att | 3 | 3 | B.1.351 | 0.000089 |
ORF7a | 82 | V82del | GTT | --- | 3 | 3 | B.1.351.2 | 0.000908 |
ORF7a | 82 | V82I | Gtt | Att | 3 | 3 | B.1.425 | 0.008982 |
ORF7a | 82 | V82V | gtT | gtC | 3 | 3 | B.1.429 | 0.000071 |
ORF7a | 82 | V82A | gTt | gCt | 3 | 3 | B.1.429 | 0.000071 |
ORF7a | 82 | V82I | Gtt | Att | 3 | 3 | B.1.429 | 0.000071 |
ORF7a | 82 | V82del2 | GTt | --t | 3 | 3 | B.1.526 | 0.000071 |
ORF7a | 82 | V82I | Gtt | Att | 3 | 3 | B.1.565 | 0.002431 |
ORF7a | 82 | V82del | GTT | --- | 3 | 3 | B.1.575 | 0.00091 |
ORF7a | 82 | V82P | GTt | CCt | 3 | 3 | B.1.617.2 | 0.000011 |
ORF7a | 82 | V82del1 | gTT | g-C | 1 | 3 | B.1.617.2 | 0.000004 |
ORF7a | 82 | V82del1 | GTt | -Ct | 1 | 3 | B.1.617.2 | 0.000004 |
ORF7a | 82 | V82del1 | gTt | g-t | 1 | 3 | B.1.617.2 | 0.000004 |
ORF7a | 82 | V82V | gtT | gtC | 3 | 3 | B.1.621 | 0.000266 |
ORF7a | 82 | V82A | gTt | gCt | 3 | 3 | B.1.621.1 | 0.001517 |
ORF7a | 82 | V82del | GTT | --- | 3 | 3 | B.1.626 | 0.017143 |
ORF7a | 82 | V82del | GTT | --- | 3 | 3 | C.12 | 0.021583 |
ORF7a | 82 | V82I | Gtt | Att | 3 | 3 | D.2 | 0.000225 |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | 0.111111 | |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | A.28 | 0.005291 |
ORF7a | 82 | V82X | GTT | TAA | 2 | 2 | All | 0 |
ORF7a | 82 | V82A | gTt | gCt | 2 | 2 | AU.3 | 0.004219 |
ORF7a | 82 | V82del2 | GTt | --t | 2 | 2 | AY.100 | 0.000092 |
ORF7a | 82 | V82G | gTt | gGt | 1 | 2 | AY.100 | 0.000046 |
ORF7a | 82 | V82G | gTT | gGC | 1 | 2 | AY.100 | 0.000046 |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | AY.102 | 0.000053 |
ORF7a | 82 | V82del2 | GTt | --t | 2 | 2 | AY.102 | 0.000053 |
ORF7a | 82 | V82D | gTt | gAt | 2 | 2 | AY.103 | 0.000012 |
ORF7a | 82 | V82S | GTt | TCt | 2 | 2 | AY.107 | 0.000932 |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | AY.108 | 0.002205 |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | AY.109 | 0.001479 |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | AY.111 | 0.000366 |
ORF7a | 82 | V82S | GTt | TCt | 2 | 2 | AY.111 | 0.000366 |
ORF7a | 82 | V82del1 | Gtt | -tt | 2 | 2 | AY.113 | 0.000285 |
ORF7a | 82 | V82T | GTt | ACt | 2 | 2 | AY.117 | 0.000169 |
ORF7a | 82 | V82V | gtT | gtA | 2 | 2 | AY.120 | 0.000074 |
ORF7a | 82 | V82del1 | Gtt | -tt | 2 | 2 | AY.120.1 | 0.000642 |
ORF7a | 82 | V82S | GTt | TCt | 2 | 2 | AY.121 | 0.000271 |
ORF7a | 82 | V82P | GTt | CCt | 2 | 2 | AY.121 | 0.000271 |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | AY.19 | 0.002281 |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | AY.27 | 0.000129 |
ORF7a | 82 | V82I | Gtt | Att | 2 | 2 | AY.3 | 0.00002 |
ORF7a | 82 | V82del2 | GTt | --t | 2 | 2 | AY.36 | 0.000296 |
ORF7a | 82 | V82D | gTt | gAt | 2 | 2 | AY.4 | 0.000003 |
ORF7a | 82 | V82del2 | gTT | g-- | 1 | 2 | AY.4.2.1 | 0.000149 |
ORF7a | 82 | V82del2 | GTt | --t | 1 | 2 | AY.4.2.1 | 0.000149 |
ORF7a | 82 | V82G | gTt | gGt | 2 | 2 | AY.43 | 0.000009 |
ORF7a | 82 | V82S | GTt | TCt | 2 | 2 | AY.46 | 0.000208 |
ORF7a | 82 | V82T | GTt | ACt | 2 | 2 | AY.46 | 0.000208 |
ORF7a | 82 | V82S | GTt | TCt | 2 | 2 | AY.46.4 | 0.000329 |
ORF7a | 82 | V82S | GTt | TCt | 2 | 2 | AY.50 | 0.001599 |
ORF7a | 82 | V82I | Gtt | Att | 1 | 2 | AY.59 | 0.00053 |
ORF7a | 82 | V82I | GtT | AtA | 1 | 2 | AY.59 | 0.00053 |
ORF7a | 82 | V82S | GTt | TCt | 2 | 2 | AY.6 | 0.000082 |
ORF7a | 82 | V82S | GTt | TCt | 2 | 2 | AY.61 | 0.00021 |
ORF7a | 82 | V82del2 | GTt | --t | 2 | 2 | AY.65 | 0.001066 |
ORF7a | 82 | V82del1 | Gtt | -tt | 2 | 2 | AY.7 | 0.000392 |
ORF7a | 82 | V82del2 | GTt | --t | 2 | 2 | AY.7 | 0.000392 |
ORF7a | 82 | V82S | GTt | TCt | 2 | 2 | AY.75 | 0.000112 |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | AY.75.1 | 0.000361 |
ORF7a | 82 | V82S | GTt | TCt | 2 | 2 | AY.84 | 0.000875 |
ORF7a | 82 | V82T | GTt | ACt | 2 | 2 | AY.85 | 0.000854 |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | AY.85 | 0.000854 |
ORF7a | 82 | V82S | GTt | TCt | 2 | 2 | AY.86 | 0.00166 |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | AY.9.1 | 0.000167 |
ORF7a | 82 | V82S | GTt | TCt | 2 | 2 | AY.9.2 | 0.000073 |
ORF7a | 82 | V82del2 | GTt | --t | 2 | 2 | AY.90 | 0.001369 |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | AY.91 | 0.001461 |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | AY.92 | 0.000575 |
ORF7a | 82 | V82del2 | GTt | --t | 1 | 2 | AY.98 | 0.000079 |
ORF7a | 82 | V82del2 | gTT | g-- | 1 | 2 | AY.98 | 0.000079 |
ORF7a | 82 | V82S | GTt | TCt | 2 | 2 | AY.98.1 | 0.000097 |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | AY.99 | 0.002099 |
ORF7a | 82 | V82T | GTt | ACt | 2 | 2 | AY.99.1 | 0.003106 |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | B | 0.000256 |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | B.1.1.220 | 0.003717 |
ORF7a | 82 | V82A | gTt | gCt | 2 | 2 | B.1.1.318 | 0.000604 |
ORF7a | 82 | V82A | gTt | gCt | 2 | 2 | B.1.1.326 | 0.003521 |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | B.1.1.37 | 0.000386 |
ORF7a | 82 | V82A | gTT | gCC | 1 | 2 | B.1.1.377 | 0.001381 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 2 | B.1.1.377 | 0.001381 |
ORF7a | 82 | V82del1 | Gtt | -tt | 2 | 2 | B.1.1.519 | 0.000079 |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | B.1.1.521 | 0.010695 |
ORF7a | 82 | V82A | gTt | gCt | 2 | 2 | B.1.1.523 | 0.003125 |
ORF7a | 82 | V82F | Gtt | Ttt | 2 | 2 | B.1.1.528 | 0.009615 |
ORF7a | 82 | V82D | gTt | gAt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | B.1.1.70 | 0.000682 |
ORF7a | 82 | V82A | gTt | gCt | 2 | 2 | B.1.157 | 0.00597 |
ORF7a | 82 | V82I | Gtt | Att | 2 | 2 | B.1.160 | 0.000062 |
ORF7a | 82 | V82A | gTt | gCt | 2 | 2 | B.1.170 | 0.008621 |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | B.1.177.10 | 0.001756 |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | B.1.177.15 | 0.001262 |
ORF7a | 82 | V82K | GTT | AAA | 2 | 2 | B.1.177.21 | 0.000153 |
ORF7a | 82 | V82del1 | Gtt | -tt | 2 | 2 | B.1.177.55 | 0.004662 |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | B.1.177.60 | 0.000437 |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | B.1.177.81 | 0.000379 |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | B.1.177.86 | 0.000367 |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | B.1.221 | 0.000142 |
ORF7a | 82 | V82I | Gtt | Att | 2 | 2 | B.1.221.4 | 0.008333 |
ORF7a | 82 | V82A | gTt | gCt | 2 | 2 | B.1.243 | 0.000139 |
ORF7a | 82 | V82A | gTt | gCt | 2 | 2 | B.1.247 | 0.029851 |
ORF7a | 82 | V82A | gTt | gCt | 2 | 2 | B.1.258.11 | 0.000793 |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | B.1.258.11 | 0.000793 |
ORF7a | 82 | V82V | gtT | gtC | 2 | 2 | B.1.305 | 0.004301 |
ORF7a | 82 | V82del1 | gtT | gt- | 2 | 2 | B.1.351.3 | 0.001753 |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF7a | 82 | V82I | Gtt | Att | 2 | 2 | B.1.36.1 | 0.002281 |
ORF7a | 82 | V82A | gTt | gCt | 2 | 2 | B.1.416.1 | 0.003125 |
ORF7a | 82 | V82del2 | GTt | --t | 2 | 2 | B.1.427 | 0.000101 |
ORF7a | 82 | V82A | gTt | gCt | 2 | 2 | B.1.427 | 0.000101 |
ORF7a | 82 | V82F | Gtt | Ttt | 2 | 2 | B.1.429 | 0.000047 |
ORF7a | 82 | V82A | gTt | gCt | 2 | 2 | B.1.466.2 | 0.000782 |
ORF7a | 82 | V82L | Gtt | Ctt | 2 | 2 | B.1.497 | 0.00063 |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | B.1.499 | 0.002101 |
ORF7a | 82 | V82I | Gtt | Att | 2 | 2 | B.1.517 | 0.000854 |
ORF7a | 82 | V82F | Gtt | Ttt | 2 | 2 | B.1.575.1 | 0.004878 |
ORF7a | 82 | V82F | Gtt | Ttt | 2 | 2 | B.1.577 | 0.001375 |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | B.1.595 | 0.000522 |
ORF7a | 82 | V82A | gTt | gCt | 2 | 2 | B.1.595 | 0.000522 |
ORF7a | 82 | V82del1 | Gtt | -tt | 2 | 2 | B.1.596 | 0.000174 |
ORF7a | 82 | V82A | gTt | gCt | 2 | 2 | B.1.604 | 0.034483 |
ORF7a | 82 | V82del1 | gTt | g-t | 2 | 2 | B.1.617.1 | 0.000258 |
ORF7a | 82 | V82S | GTt | TCt | 2 | 2 | B.1.617.1 | 0.000258 |
ORF7a | 82 | V82A | gTt | gCt | 2 | 2 | B.1.619 | 0.001742 |
ORF7a | 82 | V82V | gtT | gtC | 2 | 2 | B.1.621.1 | 0.001012 |
ORF7a | 82 | V82F | Gtt | Ttt | 2 | 2 | C.36.3 | 0.001134 |
ORF7a | 82 | V82F | Gtt | Ttt | 2 | 2 | D.2 | 0.00015 |
ORF7a | 82 | V82A | gTt | gCt | 2 | 2 | P.1.12 | 0.000968 |
ORF7a | 82 | V82del | GTT | --- | 2 | 2 | P.1.14 | 0.000096 |
ORF7a | 82 | V82I | GtT | AtA | 2 | 2 | P.1.17.1 | 0.00175 |
ORF7a | 82 | V82A | gTt | gCt | 2 | 2 | P.1.7 | 0.000639 |
ORF7a | 82 | V82F | Gtt | Ttt | 2 | 2 | P.1.7 | 0.000639 |
ORF7a | 82 | V82I | Gtt | Att | 2 | 2 | P.2 | 0.000373 |
ORF7a | 82 | V82F | Gtt | Ttt | 2 | 2 | P.6 | 0.006289 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | 0.055556 | |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | A.1 | 0.000282 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF7a | 82 | V82G | gTt | gGt | 1 | 1 | A.2.4 | 0.003367 |
ORF7a | 82 | V82N | GTT | AAC | 1 | 1 | A.2.5.1 | 0.004808 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | A.2.5.2 | 0.001572 |
ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 1 | A.23 | 0.010526 |
ORF7a | 82 | V82M | GtT | AtG | 1 | 1 | All | 0 |
ORF7a | 82 | V82C | GTt | TGt | 1 | 1 | All | 0 |
ORF7a | 82 | V82W | GTT | TGG | 1 | 1 | All | 0 |
ORF7a | 82 | V82E | gTT | gAG | 1 | 1 | All | 0 |
ORF7a | 82 | V82R | GTT | CGA | 1 | 1 | All | 0 |
ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 1 | AU.3 | 0.00211 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | AY.101 | 0.00049 |
ORF7a | 82 | V82del1 | gTT | g-C | 1 | 1 | AY.102 | 0.000027 |
ORF7a | 82 | V82G | gTt | gGt | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 82 | V82I | Gtt | Att | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | AY.104 | 0.001984 |
ORF7a | 82 | V82T | GTt | ACt | 1 | 1 | AY.106 | 0.000335 |
ORF7a | 82 | V82S | GTt | TCt | 1 | 1 | AY.110 | 0.000113 |
ORF7a | 82 | V82T | GTt | ACt | 1 | 1 | AY.110 | 0.000113 |
ORF7a | 82 | V82del2 | GTt | --t | 1 | 1 | AY.113 | 0.000142 |
ORF7a | 82 | V82S | GTt | TCt | 1 | 1 | AY.116 | 0.000287 |
ORF7a | 82 | V82T | GTt | ACt | 1 | 1 | AY.116 | 0.000287 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | AY.116.1 | 0.000311 |
ORF7a | 82 | V82T | GTt | ACt | 1 | 1 | AY.118 | 0.000063 |
ORF7a | 82 | V82S | GTt | TCt | 1 | 1 | AY.118 | 0.000063 |
ORF7a | 82 | V82del2 | GTt | --t | 1 | 1 | AY.119 | 0.000035 |
ORF7a | 82 | V82P | GTt | CCt | 1 | 1 | AY.119 | 0.000035 |
ORF7a | 82 | V82S | GTt | TCt | 1 | 1 | AY.12 | 0.000316 |
ORF7a | 82 | V82S | GTt | TCt | 1 | 1 | AY.120 | 0.000037 |
ORF7a | 82 | V82del2 | GTt | --t | 1 | 1 | AY.120 | 0.000037 |
ORF7a | 82 | V82del2 | GTt | --t | 1 | 1 | AY.120.1 | 0.000321 |
ORF7a | 82 | V82T | GTt | ACt | 1 | 1 | AY.120.2 | 0.001285 |
ORF7a | 82 | V82D | gTt | gAt | 1 | 1 | AY.121 | 0.000135 |
ORF7a | 82 | V82S | GTt | TCt | 1 | 1 | AY.15 | 0.002222 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | AY.16 | 0.00038 |
ORF7a | 82 | V82del1 | gTt | g-t | 1 | 1 | AY.16 | 0.00038 |
ORF7a | 82 | V82D | gTt | gAt | 1 | 1 | AY.16 | 0.00038 |
ORF7a | 82 | V82D | gTt | gAt | 1 | 1 | AY.23 | 0.00007 |
ORF7a | 82 | V82D | gTt | gAt | 1 | 1 | AY.24 | 0.000431 |
ORF7a | 82 | V82T | GTt | ACt | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 82 | V82T | GTt | ACt | 1 | 1 | AY.3 | 0.00001 |
ORF7a | 82 | V82del2 | GTt | --t | 1 | 1 | AY.3.1 | 0.000085 |
ORF7a | 82 | V82del1 | gTT | gC- | 1 | 1 | AY.3.1 | 0.000085 |
ORF7a | 82 | V82S | GTt | TCt | 1 | 1 | AY.3.1 | 0.000085 |
ORF7a | 82 | V82X | GTT | TAA | 1 | 1 | AY.30 | 0.000396 |
ORF7a | 82 | V82P | GTt | CCt | 1 | 1 | AY.30 | 0.000396 |
ORF7a | 82 | V82S | GTt | TCt | 1 | 1 | AY.32 | 0.000532 |
ORF7a | 82 | V82S | GTt | TCt | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 82 | V82G | gTt | gGt | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 82 | V82S | GTt | TCt | 1 | 1 | AY.34 | 0.000097 |
ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 1 | AY.34 | 0.000097 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | AY.34.1 | 0.00051 |
ORF7a | 82 | V82S | GTt | TCt | 1 | 1 | AY.36 | 0.000148 |
ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 1 | AY.36 | 0.000148 |
ORF7a | 82 | V82S | GTt | TCt | 1 | 1 | AY.38 | 0.000499 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | AY.38 | 0.000499 |
ORF7a | 82 | V82I | Gtt | Att | 1 | 1 | AY.39 | 0.000025 |
ORF7a | 82 | V82G | gTt | gGt | 1 | 1 | AY.39.1 | 0.00004 |
ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 1 | AY.39.1 | 0.00004 |
ORF7a | 82 | V82S | GTt | TCt | 1 | 1 | AY.39.1 | 0.00004 |
ORF7a | 82 | V82I | Gtt | Att | 1 | 1 | AY.4 | 0.000002 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | AY.4.1 | 0.000737 |
ORF7a | 82 | V82T | GTt | ACt | 1 | 1 | AY.4.2 | 0.000022 |
ORF7a | 82 | V82del2 | GTt | --t | 1 | 1 | AY.4.2 | 0.000022 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | AY.4.4 | 0.000409 |
ORF7a | 82 | V82T | GTt | ACt | 1 | 1 | AY.4.5 | 0.000107 |
ORF7a | 82 | V82S | GTt | TCt | 1 | 1 | AY.42 | 0.00004 |
ORF7a | 82 | V82P | GTt | CCt | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 82 | V82D | gTt | gAt | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 82 | V82X | GTT | TAA | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 82 | V82F | Gtt | Ttt | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 82 | V82F | Gtt | Ttt | 1 | 1 | AY.44 | 0.000006 |
ORF7a | 82 | V82V | gtT | gtA | 1 | 1 | AY.44 | 0.000006 |
ORF7a | 82 | V82M | GtT | AtG | 1 | 1 | AY.44 | 0.000006 |
ORF7a | 82 | V82P | GTt | CCt | 1 | 1 | AY.46 | 0.000104 |
ORF7a | 82 | V82T | GTt | ACt | 1 | 1 | AY.46.2 | 0.000635 |
ORF7a | 82 | V82T | GTt | ACt | 1 | 1 | AY.46.4 | 0.000165 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | AY.46.5 | 0.000198 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | AY.48 | 0.000465 |
ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 1 | AY.48 | 0.000465 |
ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 1 | AY.5 | 0.000021 |
ORF7a | 82 | V82del1 | gTt | g-t | 1 | 1 | AY.50 | 0.000799 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | AY.52 | 0.000814 |
ORF7a | 82 | V82I | Gtt | Att | 1 | 1 | AY.54 | 0.000095 |
ORF7a | 82 | V82S | GTt | TCt | 1 | 1 | AY.54 | 0.000095 |
ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 1 | AY.54 | 0.000095 |
ORF7a | 82 | V82T | GTt | ACt | 1 | 1 | AY.55 | 0.000917 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | AY.59 | 0.00053 |
ORF7a | 82 | V82V | gtT | gtA | 1 | 1 | AY.59 | 0.00053 |
ORF7a | 82 | V82del2 | GTt | --t | 1 | 1 | AY.6 | 0.000041 |
ORF7a | 82 | V82D | gTt | gAt | 1 | 1 | AY.61 | 0.000105 |
ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 1 | AY.61 | 0.000105 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | AY.62 | 0.000436 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | AY.66 | 0.00107 |
ORF7a | 82 | V82I | Gtt | Att | 1 | 1 | AY.67 | 0.000464 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | AY.69 | 0.000187 |
ORF7a | 82 | V82P | GTt | CCt | 1 | 1 | AY.7 | 0.000196 |
ORF7a | 82 | V82V | gtT | gtG | 1 | 1 | AY.7.1 | 0.000113 |
ORF7a | 82 | V82S | GTt | TCt | 1 | 1 | AY.7.1 | 0.000113 |
ORF7a | 82 | V82V | gtT | gtC | 1 | 1 | AY.7.2 | 0.000559 |
ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 1 | AY.7.2 | 0.000559 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | AY.70 | 0.000209 |
ORF7a | 82 | V82T | GTt | ACt | 1 | 1 | AY.70 | 0.000209 |
ORF7a | 82 | V82del2 | GTt | --t | 1 | 1 | AY.71 | 0.000475 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | AY.73 | 0.000665 |
ORF7a | 82 | V82I | Gtt | Att | 1 | 1 | AY.74 | 0.000116 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | AY.74 | 0.000116 |
ORF7a | 82 | V82del2 | GTt | --t | 1 | 1 | AY.75 | 0.000056 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | AY.84 | 0.000437 |
ORF7a | 82 | V82del2 | gTT | g-- | 1 | 1 | AY.85 | 0.000427 |
ORF7a | 82 | V82V | gtT | gtC | 1 | 1 | AY.85 | 0.000427 |
ORF7a | 82 | V82T | GTt | ACt | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 82 | V82S | GTt | TCt | 1 | 1 | AY.91 | 0.00073 |
ORF7a | 82 | V82S | GTt | TCt | 1 | 1 | AY.94 | 0.000443 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | AY.95 | 0.000761 |
ORF7a | 82 | V82G | gTt | gGt | 1 | 1 | AY.99 | 0.001049 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF7a | 82 | V82C | GTt | TGt | 1 | 1 | B.1 | 0.000009 |
ORF7a | 82 | V82S | GTt | AGt | 1 | 1 | B.1 | 0.000009 |
ORF7a | 82 | V82del2 | GTt | --t | 1 | 1 | B.1 | 0.000009 |
ORF7a | 82 | V82del1 | GtT | -tN | 1 | 1 | B.1 | 0.000009 |
ORF7a | 82 | V82P | GTt | CCt | 1 | 1 | B.1 | 0.000009 |
ORF7a | 82 | V82G | gTt | gGt | 1 | 1 | B.1 | 0.000009 |
ORF7a | 82 | V82D | gTt | gAt | 1 | 1 | B.1.1 | 0.000018 |
ORF7a | 82 | V82V | gtT | gtG | 1 | 1 | B.1.1 | 0.000018 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.1.1 | 0.000327 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.1.121 | 0.002427 |
ORF7a | 82 | V82I | Gtt | Att | 1 | 1 | B.1.1.141 | 0.002012 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.1.174 | 0.003378 |
ORF7a | 82 | V82I | Gtt | Att | 1 | 1 | B.1.1.189 | 0.001513 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.1.192 | 0.002309 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.1.194 | 0.00495 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.1.205 | 0.003717 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF7a | 82 | V82V | gtT | gtC | 1 | 1 | B.1.1.216 | 0.00089 |
ORF7a | 82 | V82F | Gtt | Ttt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF7a | 82 | V82V | gtT | gtC | 1 | 1 | B.1.1.265 | 0.003155 |
ORF7a | 82 | V82del2 | GTt | --t | 1 | 1 | B.1.1.265 | 0.003155 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.1.277 | 0.000759 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF7a | 82 | V82F | Gtt | Ttt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF7a | 82 | V82V | gtT | gtC | 1 | 1 | B.1.1.280 | 0.003086 |
ORF7a | 82 | V82I | Gtt | Att | 1 | 1 | B.1.1.282 | 0.011628 |
ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF7a | 82 | V82V | gtT | gtC | 1 | 1 | B.1.1.294 | 0.001266 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.1.303 | 0.002762 |
ORF7a | 82 | V82I | Gtt | Att | 1 | 1 | B.1.1.305 | 0.003861 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.1.318 | 0.000302 |
ORF7a | 82 | V82F | Gtt | Ttt | 1 | 1 | B.1.1.326 | 0.001761 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF7a | 82 | V82I | Gtt | Att | 1 | 1 | B.1.1.33 | 0.000421 |
ORF7a | 82 | V82F | Gtt | Ttt | 1 | 1 | B.1.1.348 | 0.000796 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.1.348 | 0.000796 |
ORF7a | 82 | V82F | Gtt | Ttt | 1 | 1 | B.1.1.354 | 0.004386 |
ORF7a | 82 | V82I | Gtt | Att | 1 | 1 | B.1.1.363 | 0.005988 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.1.366 | 0.015873 |
ORF7a | 82 | V82V | gtT | gtC | 1 | 1 | B.1.1.377 | 0.001381 |
ORF7a | 82 | V82I | Gtt | Att | 1 | 1 | B.1.1.385 | 0.004464 |
ORF7a | 82 | V82G | gTt | gGt | 1 | 1 | B.1.1.398 | 0.003226 |
ORF7a | 82 | V82V | gtT | gtC | 1 | 1 | B.1.1.434 | 0.000349 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.1.437 | 0.010417 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF7a | 82 | V82del2 | GTt | --t | 1 | 1 | B.1.1.519 | 0.00004 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.1.526 | 0.003546 |
ORF7a | 82 | V82K | GTT | AAA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 82 | V82T | GTT | ACA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 82 | V82V | gtT | gtG | 1 | 1 | B.1.110 | 0.004525 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.115 | 0.021739 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.131 | 0.008772 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.142 | 0.002899 |
ORF7a | 82 | V82del1 | gtT | gt- | 1 | 1 | B.1.160 | 0.000031 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.160.15 | 0.00495 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.160.16 | 0.000929 |
ORF7a | 82 | V82V | gtT | gtA | 1 | 1 | B.1.160.22 | 0.006757 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.160.30 | 0.002976 |
ORF7a | 82 | V82del1 | gTt | g-t | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 82 | V82del1 | gtT | gt- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF7a | 82 | V82N | GTt | AAt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7a | 82 | V82F | Gtt | Ttt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.177.31 | 0.011494 |
ORF7a | 82 | V82I | Gtt | Att | 1 | 1 | B.1.177.32 | 0.00135 |
ORF7a | 82 | V82F | Gtt | Ttt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF7a | 82 | V82V | gtT | gtC | 1 | 1 | B.1.177.6 | 0.000977 |
ORF7a | 82 | V82del2 | GTT | --N | 1 | 1 | B.1.177.6 | 0.000977 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF7a | 82 | V82T | GTt | ACt | 1 | 1 | B.1.177.63 | 0.002703 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF7a | 82 | V82L | Gtt | Ctt | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 82 | V82I | Gtt | Att | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 82 | V82del2 | GTT | --N | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 82 | V82G | gTt | gGt | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 82 | V82del1 | gTt | g-t | 1 | 1 | B.1.214 | 0.003663 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.218 | 0.005155 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.221 | 0.000071 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.221.1 | 0.002907 |
ORF7a | 82 | V82V | gtT | gtC | 1 | 1 | B.1.234 | 0.000132 |
ORF7a | 82 | V82del1 | Gtt | -tt | 1 | 1 | B.1.234 | 0.000132 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.240 | 0.000216 |
ORF7a | 82 | V82del2 | GTt | --t | 1 | 1 | B.1.240 | 0.000216 |
ORF7a | 82 | V82I | Gtt | Att | 1 | 1 | B.1.242 | 0.018868 |
ORF7a | 82 | V82F | Gtt | Ttt | 1 | 1 | B.1.243 | 0.00007 |
ORF7a | 82 | V82del1 | gtT | gt- | 1 | 1 | B.1.243 | 0.00007 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.243.2 | 0.014493 |
ORF7a | 82 | V82del1 | gTt | g-t | 1 | 1 | B.1.247 | 0.014925 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.252 | 0.006623 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.258 | 0.000067 |
ORF7a | 82 | V82L | Gtt | Ctt | 1 | 1 | B.1.258 | 0.000067 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.265 | 0.001271 |
ORF7a | 82 | V82F | Gtt | Ttt | 1 | 1 | B.1.301 | 0.005917 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.301 | 0.005917 |
ORF7a | 82 | V82I | Gtt | Att | 1 | 1 | B.1.311 | 0.000275 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.349 | 0.000715 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.351.3 | 0.000876 |
ORF7a | 82 | V82I | Gtt | Att | 1 | 1 | B.1.36 | 0.000146 |
ORF7a | 82 | V82del1 | gTt | g-t | 1 | 1 | B.1.36 | 0.000146 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.36 | 0.000146 |
ORF7a | 82 | V82del1 | gtT | gt- | 1 | 1 | B.1.36.31 | 0.001751 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.36.31 | 0.001751 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.362 | 0.001541 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.371 | 0.001122 |
ORF7a | 82 | V82N | GTt | AAt | 1 | 1 | B.1.398 | 0.002976 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.400 | 0.000429 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.406 | 0.006061 |
ORF7a | 82 | V82I | Gtt | Att | 1 | 1 | B.1.416 | 0.001269 |
ORF7a | 82 | V82F | Gtt | Ttt | 1 | 1 | B.1.420 | 0.010417 |
ORF7a | 82 | V82I | Gtt | Att | 1 | 1 | B.1.427 | 0.00005 |
ORF7a | 82 | V82del1 | gtT | gt- | 1 | 1 | B.1.427 | 0.00005 |
ORF7a | 82 | V82L | Gtt | Ctt | 1 | 1 | B.1.429 | 0.000024 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.433 | 0.003195 |
ORF7a | 82 | V82I | Gtt | Att | 1 | 1 | B.1.438 | 0.006536 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.459 | 0.004082 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.459 | 0.004082 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7a | 82 | V82F | Gtt | Ttt | 1 | 1 | B.1.467 | 0.04 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.470 | 0.001404 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.474 | 0.001901 |
ORF7a | 82 | V82E | gTT | gAG | 1 | 1 | B.1.497 | 0.000315 |
ORF7a | 82 | V82D | gTT | gAC | 1 | 1 | B.1.497 | 0.000315 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.524 | 0.001406 |
ORF7a | 82 | V82I | Gtt | Att | 1 | 1 | B.1.525 | 0.000113 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.525 | 0.000113 |
ORF7a | 82 | V82F | Gtt | Ttt | 1 | 1 | B.1.525 | 0.000113 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.526 | 0.000024 |
ORF7a | 82 | V82S | GTt | AGt | 1 | 1 | B.1.526 | 0.000024 |
ORF7a | 82 | V82I | Gtt | Att | 1 | 1 | B.1.526 | 0.000024 |
ORF7a | 82 | V82del1 | gtT | gt- | 1 | 1 | B.1.526 | 0.000024 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.527 | 0.003704 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.535 | 0.028571 |
ORF7a | 82 | V82F | Gtt | Ttt | 1 | 1 | B.1.551 | 0.00129 |
ORF7a | 82 | V82F | Gtt | Ttt | 1 | 1 | B.1.561 | 0.000397 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.564 | 0.000426 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.564.1 | 0.001577 |
ORF7a | 82 | V82del1 | GTT | -NN | 1 | 1 | B.1.568 | 0.001111 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.574 | 0.002151 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.576 | 0.000907 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF7a | 82 | V82V | gtT | gtC | 1 | 1 | B.1.580 | 0.004065 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.582 | 0.000491 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.582 | 0.000491 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.602 | 0.006536 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.609 | 0.000479 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 82 | V82D | gTt | gAt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 82 | V82R | GTT | CGA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 82 | V82W | GTT | TGG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 82 | V82del1 | gTt | g-t | 1 | 1 | B.1.617.3 | 0.002985 |
ORF7a | 82 | V82V | gtT | gtG | 1 | 1 | B.1.619 | 0.000871 |
ORF7a | 82 | V82D | gTt | gAt | 1 | 1 | B.1.619 | 0.000871 |
ORF7a | 82 | V82I | Gtt | Att | 1 | 1 | B.1.620 | 0.000946 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF7a | 82 | V82I | Gtt | Att | 1 | 1 | B.1.621 | 0.000089 |
ORF7a | 82 | V82L | Gtt | Ctt | 1 | 1 | B.1.621 | 0.000089 |
ORF7a | 82 | V82I | Gtt | Att | 1 | 1 | B.1.621.1 | 0.000506 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF7a | 82 | V82F | Gtt | Ttt | 1 | 1 | B.1.625 | 0.002353 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.628 | 0.000352 |
ORF7a | 82 | V82I | Gtt | Att | 1 | 1 | B.1.628 | 0.000352 |
ORF7a | 82 | V82V | gtT | gtG | 1 | 1 | B.1.637 | 0.000073 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.1.83 | 0.015385 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.88.1 | 0.004808 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.9.1 | 0.032258 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | B.1.93 | 0.000934 |
ORF7a | 82 | V82F | Gtt | Ttt | 1 | 1 | B.29 | 0.003509 |
ORF7a | 82 | V82G | gTt | gGt | 1 | 1 | B.40 | 0.000364 |
ORF7a | 82 | V82D | gTt | gAt | 1 | 1 | B.40 | 0.000364 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | B.55 | 0.00295 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | C.36.3 | 0.000567 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | C.36.3 | 0.000567 |
ORF7a | 82 | V82F | Gtt | Ttt | 1 | 1 | C.37 | 0.000116 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | C.37.1 | 0.002618 |
ORF7a | 82 | V82F | Gtt | Ttt | 1 | 1 | C.40 | 0.027778 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | D.2 | 0.000075 |
ORF7a | 82 | V82V | gtT | gtC | 1 | 1 | D.2 | 0.000075 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | N.5 | 0.001767 |
ORF7a | 82 | V82del2 | GTt | --t | 1 | 1 | P.1 | 0.000016 |
ORF7a | 82 | V82G | gTt | gGt | 1 | 1 | P.1 | 0.000016 |
ORF7a | 82 | V82del1 | gTt | g-t | 1 | 1 | P.1 | 0.000016 |
ORF7a | 82 | V82V | gtT | gtC | 1 | 1 | P.1 | 0.000016 |
ORF7a | 82 | V82I | Gtt | Att | 1 | 1 | P.1 | 0.000016 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | P.1.1 | 0.000318 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF7a | 82 | V82V | gtT | gtC | 1 | 1 | P.1.1 | 0.000318 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | P.1.13 | 0.000898 |
ORF7a | 82 | V82V | gtT | gtG | 1 | 1 | P.1.14 | 0.000048 |
ORF7a | 82 | V82V | gtT | gtC | 1 | 1 | P.1.15 | 0.000232 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | P.1.16 | 0.000374 |
ORF7a | 82 | V82V | gtT | gtA | 1 | 1 | P.1.17.1 | 0.000875 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | P.1.3 | 0.034483 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | P.1.4 | 0.000977 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | P.1.8 | 0.004785 |
ORF7a | 82 | V82F | Gtt | Ttt | 1 | 1 | P.1.8 | 0.004785 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | P.2 | 0.000187 |
ORF7a | 82 | V82V | gtT | gtC | 1 | 1 | P.2 | 0.000187 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | P.3 | 0.001595 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | P.5 | 0.013699 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | Q.1 | 0.000126 |
ORF7a | 82 | V82A | gTt | gCt | 1 | 1 | Q.3 | 0.000145 |
ORF7a | 82 | V82del | GTT | --- | 1 | 1 | Q.7 | 0.001111 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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