CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 82

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF7a	82	V82A		nonsyn	gTt	gCt	2596355	2596239	0.999955	27637-27639
ORF7a	82	V82A		nonsyn	gTT	gCC	2596355	70	0.0000269609	27637-27639
ORF7a	82	V82A		nonsyn	gTT	gCG	2596355	31	0.0000119398	27637-27639
ORF7a	82	V82A		nonsyn	gTT	gCA	2596355	15	0.00000577733	27637-27639
ORF7a	82	V82del		del	GTT	---	6245	6245	1	27637-27639
ORF7a	82	V82S		nonsyn	GTt	TCt	935	930	0.994652	27637-27639
ORF7a	82	V82S		nonsyn	GTt	AGt	935	4	0.00427807	27637-27639
ORF7a	82	V82S		nonsyn	GTT	AGC	935	1	0.00106952	27637-27639
ORF7a	82	V82F		nonsyn	Gtt	Ttt	793	793	1	27637-27639
ORF7a	82	V82T		nonsyn	GTt	ACt	571	569	0.996497	27637-27639
ORF7a	82	V82T		nonsyn	GTT	ACA	571	1	0.00175131	27637-27639
ORF7a	82	V82T		nonsyn	GTT	ACC	571	1	0.00175131	27637-27639
ORF7a	82	V82V		syn	gtT	gtC	335	315	0.940298	27637-27639
ORF7a	82	V82V		syn	gtT	gtG	335	12	0.0358209	27637-27639
ORF7a	82	V82V		syn	gtT	gtA	335	8	0.0238806	27637-27639
ORF7a	82	V82del1		del	Gtt	-tt	326	263	0.806748	27637-27639
ORF7a	82	V82del1		del	gTt	g-t	326	20	0.0613497	27637-27639
ORF7a	82	V82del1		del	gTT	gC-	326	17	0.0521472	27637-27639
ORF7a	82	V82del1		del	gtT	gt-	326	11	0.0337423	27637-27639
ORF7a	82	V82del1		del	GTt	-Ct	326	7	0.0214724	27637-27639
ORF7a	82	V82del1		del	GTT	-CA	326	2	0.00613497	27637-27639
ORF7a	82	V82del1		del	gTT	g-C	326	2	0.00613497	27637-27639
ORF7a	82	V82del1		del	GTT	-NN	326	2	0.00613497	27637-27639
ORF7a	82	V82del1		del	GtT	-tN	326	1	0.00306748	27637-27639
ORF7a	82	V82del1		del	GtT	-tA	326	1	0.00306748	27637-27639
ORF7a	82	V82del2		del	GTt	--t	226	185	0.818584	27637-27639
ORF7a	82	V82del2		del	gTT	g--	226	22	0.0973451	27637-27639
ORF7a	82	V82del2		del	GTT	--N	226	19	0.0840708	27637-27639
ORF7a	82	V82I		nonsyn	Gtt	Att	164	160	0.97561	27637-27639
ORF7a	82	V82I		nonsyn	GtT	AtA	164	4	0.0243902	27637-27639
ORF7a	82	V82D		nonsyn	gTt	gAt	108	107	0.990741	27637-27639
ORF7a	82	V82D		nonsyn	gTT	gAC	108	1	0.00925926	27637-27639
ORF7a	82	V82P		nonsyn	GTt	CCt	34	34	1	27637-27639
ORF7a	82	V82L		nonsyn	Gtt	Ctt	21	21	1	27637-27639
ORF7a	82	V82G		nonsyn	gTt	gGt	21	20	0.952381	27637-27639
ORF7a	82	V82G		nonsyn	gTT	gGC	21	1	0.047619	27637-27639
ORF7a	82	V82N		nonsyn	GTt	AAt	9	8	0.888889	27637-27639
ORF7a	82	V82N		nonsyn	GTT	AAC	9	1	0.111111	27637-27639
ORF7a	82	V82H		nonsyn	GTt	CAt	6	6	1	27637-27639
ORF7a	82	V82K		nonsyn	GTT	AAA	3	3	1	27637-27639
ORF7a	82	V82X		nonsyn	GTT	TAA	2	2	1	27637-27639
ORF7a	82	V82R		nonsyn	GTT	CGA	1	1	1	27637-27639
ORF7a	82	V82W		nonsyn	GTT	TGG	1	1	1	27637-27639
ORF7a	82	V82M		nonsyn	GtT	AtG	1	1	1	27637-27639
ORF7a	82	V82C		nonsyn	GTt	TGt	1	1	1	27637-27639
ORF7a	82	V82E		nonsyn	gTT	gAG	1	1	1	27637-27639

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF7a	82	V82A	gTt	gCt	2596239	2596355	All	0.496561
ORF7a	82	V82A	gTT	gCC	70	2596355	All	0.000013
ORF7a	82	V82A	gTT	gCG	31	2596355	All	0.000006
ORF7a	82	V82A	gTT	gCA	15	2596355	All	0.000003
ORF7a	82	V82A	gTt	gCt	611892	611908	AY.4	0.952363
ORF7a	82	V82A	gTT	gCC	12	611908	AY.4	0.000019
ORF7a	82	V82A	gTT	gCG	3	611908	AY.4	0.000005
ORF7a	82	V82A	gTT	gCA	1	611908	AY.4	0.000002
ORF7a	82	V82A	gTt	gCt	256314	256329	B.1.617.2	0.965128
ORF7a	82	V82A	gTT	gCA	7	256329	B.1.617.2	0.000026
ORF7a	82	V82A	gTT	gCC	4	256329	B.1.617.2	0.000015
ORF7a	82	V82A	gTT	gCG	4	256329	B.1.617.2	0.000015
ORF7a	82	V82A	gTt	gCt	213858	213869	AY.43	0.94749
ORF7a	82	V82A	gTT	gCG	8	213869	AY.43	0.000035
ORF7a	82	V82A	gTT	gCC	2	213869	AY.43	0.000009
ORF7a	82	V82A	gTT	gCA	1	213869	AY.43	0.000004
ORF7a	82	V82A	gTt	gCt	157636	157641	AY.25	0.948152
ORF7a	82	V82A	gTT	gCC	5	157641	AY.25	0.00003
ORF7a	82	V82A	gTt	gCt	151829	151831	AY.44	0.924147
ORF7a	82	V82A	gTT	gCC	2	151831	AY.44	0.000012
ORF7a	82	V82A	gTt	gCt	151148	151151	AY.103	0.938487
ORF7a	82	V82A	gTT	gCC	3	151151	AY.103	0.000019
ORF7a	82	V82A	gTt	gCt	94602	94609	AY.3	0.940948
ORF7a	82	V82A	gTT	gCG	7	94609	AY.3	0.00007
ORF7a	82	V82A	gTt	gCt	63165	63166	AY.29	0.996341
ORF7a	82	V82A	gTT	gCC	1	63166	AY.29	0.000016
ORF7a	82	V82A	gTt	gCt	45197	45197	AY.4.2	0.980263
ORF7a	82	V82A	gTt	gCt	44963	44963	AY.5	0.92845
ORF7a	82	V82A	gTt	gCt	37398	37398	AY.102	0.991569
ORF7a	82	V82A	gTt	gCt	33125	33125	AY.26	0.937774
ORF7a	82	V82A	gTt	gCt	30285	30285	AY.47	0.94202
ORF7a	82	V82A	gTt	gCt	26515	26518	AY.119	0.936198
ORF7a	82	V82A	gTT	gCC	2	26518	AY.119	0.000071
ORF7a	82	V82A	gTT	gCG	1	26518	AY.119	0.000035
ORF7a	82	V82A	gTt	gCt	26020	26022	AY.9.2	0.955704
ORF7a	82	V82A	gTT	gCG	1	26022	AY.9.2	0.000037
ORF7a	82	V82A	gTT	gCC	1	26022	AY.9.2	0.000037
ORF7a	82	V82A	gTt	gCt	25233	25236	AY.39	0.623545
ORF7a	82	V82A	gTT	gCC	2	25236	AY.39	0.000049
ORF7a	82	V82A	gTT	gCG	1	25236	AY.39	0.000025
ORF7a	82	V82A	gTt	gCt	24527	24527	AY.39.1	0.971597
ORF7a	82	V82A	gTt	gCt	24336	24338	AY.20	0.945822
ORF7a	82	V82A	gTT	gCA	1	24338	AY.20	0.000039
ORF7a	82	V82A	gTT	gCG	1	24338	AY.20	0.000039
ORF7a	82	V82A	gTt	gCt	23516	23516	AY.6	0.967179
ORF7a	82	V82A	gTt	gCt	23306	23308	AY.120	0.866491
ORF7a	82	V82A	gTT	gCC	2	23308	AY.120	0.000074
ORF7a	82	V82A	gTt	gCt	23012	23012	AY.42	0.925775
ORF7a	82	V82A	gTt	gCt	19598	19599	AY.98.1	0.949148
ORF7a	82	V82A	gTT	gCC	1	19599	AY.98.1	0.000048
ORF7a	82	V82A	gTt	gCt	18831	18832	AY.100	0.866351
ORF7a	82	V82A	gTT	gCC	1	18832	AY.100	0.000046
ORF7a	82	V82A	gTt	gCt	16260	16276	AY.75	0.910924
ORF7a	82	V82A	gTT	gCC	16	16276	AY.75	0.000896
ORF7a	82	V82A	gTt	gCt	15122	15122	AY.118	0.947375
ORF7a	82	V82A	gTt	gCt	14512	14512	AY.27	0.939227
ORF7a	82	V82A	gTt	gCt	14044	14044	AY.9	0.949304
ORF7a	82	V82A	gTt	gCt	13693	13697	AY.33	0.914391
ORF7a	82	V82A	gTT	gCC	2	13697	AY.33	0.000134
ORF7a	82	V82A	gTT	gCG	1	13697	AY.33	0.000067
ORF7a	82	V82A	gTT	gCA	1	13697	AY.33	0.000067
ORF7a	82	V82A	gTt	gCt	13140	13140	AY.46.6	0.948805
ORF7a	82	V82A	gTt	gCt	12472	12472	AY.23	0.869917
ORF7a	82	V82A	gTt	gCt	11831	11831	AY.98	0.934592
ORF7a	82	V82A	gTt	gCt	11554	11554	AY.9.1	0.967348
ORF7a	82	V82A	gTt	gCt	11081	11081	AY.117	0.936528
ORF7a	82	V82A	gTt	gCt	10913	10913	AY.14	0.960482
ORF7a	82	V82A	gTt	gCt	10738	10738	AY.3.1	0.915509
ORF7a	82	V82A	gTt	gCt	10214	10214	AY.99.2	0.941296
ORF7a	82	V82A	gTt	gCt	9938	9938	AY.34	0.963638
ORF7a	82	V82A	gTt	gCt	9772	9772	AY.54	0.931732
ORF7a	82	V82A	gTt	gCt	9147	9147	AY.61	0.958403
ORF7a	82	V82A	gTt	gCt	8975	8977	AY.46	0.934117
ORF7a	82	V82A	gTT	gCG	1	8977	AY.46	0.000104
ORF7a	82	V82A	gTT	gCC	1	8977	AY.46	0.000104
ORF7a	82	V82A	gTt	gCt	8640	8640	AY.110	0.973631
ORF7a	82	V82A	gTt	gCt	8587	8587	AY.4.5	0.923036
ORF7a	82	V82A	gTt	gCt	8518	8518	AY.74	0.985082
ORF7a	82	V82A	gTt	gCt	8265	8265	AY.7.1	0.931478
ORF7a	82	V82A	gTt	gCt	7503	7503	AY.45	0.912996
ORF7a	82	V82A	gTt	gCt	6778	6778	B.1.617.1	0.874129
ORF7a	82	V82A	gTt	gCt	6594	6594	AY.113	0.938915
ORF7a	82	V82A	gTt	gCt	6305	6312	AY.36	0.934489
ORF7a	82	V82A	gTT	gCC	7	6312	AY.36	0.001037
ORF7a	82	V82del	GTT	---	6245	6245	All	0.001194
ORF7a	82	V82A	gTt	gCt	6144	6148	AY.121	0.831394
ORF7a	82	V82A	gTT	gCA	4	6148	AY.121	0.000541
ORF7a	82	V82A	gTt	gCt	6067	6067	AY.4.2.1	0.903903
ORF7a	82	V82A	gTt	gCt	5895	5895	AY.13	0.94897
ORF7a	82	V82A	gTt	gCt	5813	5813	AY.46.4	0.956243
ORF7a	82	V82A	gTt	gCt	5336	5336	AY.69	0.99608
ORF7a	82	V82A	gTt	gCt	5229	5229	AY.111	0.957692
ORF7a	82	V82A	gTt	gCt	4899	4899	AY.46.5	0.972024
ORF7a	82	V82A	gTt	gCt	4831	4831	AY.7	0.946884
ORF7a	82	V82A	gTt	gCt	4645	4645	AY.70	0.968515
ORF7a	82	V82A	gTt	gCt	4614	4614	AY.75.1	0.831951
ORF7a	82	V82A	gTt	gCt	4520	4520	AY.29.1	0.996692
ORF7a	82	V82A	gTt	gCt	4146	4146	AY.35	0.966208
ORF7a	82	V82A	gTt	gCt	4015	4016	AY.114	0.927895
ORF7a	82	V82A	gTT	gCC	1	4016	AY.114	0.000231
ORF7a	82	V82A	gTt	gCt	3600	3600	AY.93	0.983069
ORF7a	82	V82A	gTt	gCt	3386	3386	AY.5.4	0.936912
ORF7a	82	V82A	gTt	gCt	3291	3291	AY.41	0.967372
ORF7a	82	V82A	gTt	gCt	3258	3258	AY.53	0.936745
ORF7a	82	V82A	gTt	gCt	3233	3233	AY.116	0.927158
ORF7a	82	V82A	gTt	gCt	3017	3017	AY.116.1	0.939583
ORF7a	82	V82A	gTt	gCt	2969	2969	AY.68	0.812757
ORF7a	82	V82A	gTt	gCt	2957	2957	AY.92	0.849469
ORF7a	82	V82A	gTt	gCt	2879	2879	AY.37	0.909924
ORF7a	82	V82A	gTt	gCt	2868	2868	AY.120.1	0.920706
ORF7a	82	V82A	gTt	gCt	2798	2798	AY.5.3	0.943995
ORF7a	82	V82A	gTt	gCt	2789	2791	AY.106	0.934025
ORF7a	82	V82A	gTT	gCG	2	2791	AY.106	0.00067
ORF7a	82	V82A	gTt	gCt	2671	2671	AY.2	0.951211
ORF7a	82	V82A	gTt	gCt	2529	2529	AY.63	0.978337
ORF7a	82	V82A	gTt	gCt	2488	2488	AY.12	0.786346
ORF7a	82	V82A	gTt	gCt	2422	2422	AY.1	0.958449
ORF7a	82	V82A	gTt	gCt	2388	2388	AY.23.1	0.996661
ORF7a	82	V82A	gTt	gCt	2383	2383	AY.30	0.943015
ORF7a	82	V82A	gTt	gCt	2364	2364	AY.4.4	0.967267
ORF7a	82	V82A	gTt	gCt	2350	2351	AY.16	0.892179
ORF7a	82	V82A	gTT	gCC	1	2351	AY.16	0.00038
ORF7a	82	V82A	gTt	gCt	2202	2202	AY.62	0.959477
ORF7a	82	V82A	gTt	gCt	2188	2188	AY.24	0.943103
ORF7a	82	V82A	gTt	gCt	2149	2149	AY.94	0.951306
ORF7a	82	V82A	gTt	gCt	2143	2143	AY.85	0.915421
ORF7a	82	V82A	gTt	gCt	1971	1971	AY.107	0.918453
ORF7a	82	V82A	gTt	gCt	1922	1922	AY.120.2.1	0.957648
ORF7a	82	V82A	gTt	gCt	1917	1917	AY.34.1	0.977562
ORF7a	82	V82A	gTt	gCt	1876	1876	AY.101	0.920059
ORF7a	82	V82A	gTt	gCt	1873	1873	AY.38	0.935097
ORF7a	82	V82del	GTT	---	1860	1860	AY.4	0.002895
ORF7a	82	V82A	gTt	gCt	1857	1857	AY.67	0.862117
ORF7a	82	V82A	gTt	gCt	1846	1846	AY.84	0.807524
ORF7a	82	V82A	gTt	gCt	1816	1816	AY.71	0.862708
ORF7a	82	V82A	gTt	gCt	1793	1793	AY.10	0.950185
ORF7a	82	V82A	gTt	gCt	1744	1744	AY.48	0.811163
ORF7a	82	V82A	gTt	gCt	1741	1741	AY.32	0.92705
ORF7a	82	V82A	gTt	gCt	1726	1726	AY.59	0.914195
ORF7a	82	V82A	gTt	gCt	1620	1620	AY.8	0.981818
ORF7a	82	V82A	gTt	gCt	1604	1604	AY.7.2	0.897092
ORF7a	82	V82A	gTt	gCt	1555	1556	AY.64	0.925595
ORF7a	82	V82A	gTT	gCG	1	1556	AY.64	0.000595
ORF7a	82	V82A	gTt	gCt	1504	1504	AY.46.2	0.955527
ORF7a	82	V82A	gTt	gCt	1500	1502	AY.57	0.984252
ORF7a	82	V82A	gTT	gCC	2	1502	AY.57	0.001312
ORF7a	82	V82A	gTt	gCt	1474	1474	AY.73	0.980705
ORF7a	82	V82A	gTt	gCt	1452	1452	AY.105	0.933762
ORF7a	82	V82A	gTt	gCt	1444	1444	AY.65	0.769723
ORF7a	82	V82A	gTt	gCt	1424	1424	AY.90	0.974675
ORF7a	82	V82A	gTt	gCt	1344	1344	AY.4.1	0.99115
ORF7a	82	V82A	gTt	gCt	1319	1319	AY.39.1.1	0.955797
ORF7a	82	V82A	gTt	gCt	1276	1276	AY.91	0.932067
ORF7a	82	V82A	gTt	gCt	1225	1225	AY.50	0.979217
ORF7a	82	V82A	gTt	gCt	1176	1176	AY.86	0.975934
ORF7a	82	V82A	gTt	gCt	1155	1155	AY.4.3	0.972222
ORF7a	82	V82A	gTt	gCt	1122	1122	AY.87	0.934221
ORF7a	82	V82A	gTt	gCt	1098	1098	AY.95	0.835616
ORF7a	82	V82A	gTt	gCt	1085	1085	AY.109	0.802515
ORF7a	82	V82del	GTT	---	1081	1081	B.1.1.7	0.000968
ORF7a	82	V82A	gTt	gCt	1017	1017	AY.46.3	0.94958
ORF7a	82	V82A	gTt	gCt	1010	1010	AY.60	0.947467
ORF7a	82	V82A	gTt	gCt	1005	1005	AY.51	0.913636
ORF7a	82	V82A	gTt	gCt	993	993	AY.58	0.901089
ORF7a	82	V82S	GTt	TCt	930	935	All	0.000178
ORF7a	82	V82S	GTt	AGt	4	935	All	0.000001
ORF7a	82	V82S	GTT	AGC	1	935	All	0
ORF7a	82	V82A	gTt	gCt	922	922	AY.55	0.845872
ORF7a	82	V82A	gTt	gCt	912	912	AY.16.1	0.428571
ORF7a	82	V82A	gTt	gCt	910	910	AY.88	0.804598
ORF7a	82	V82A	gTt	gCt	871	871	AY.108	0.960309
ORF7a	82	V82A	gTt	gCt	859	859	AY.40	0.828351
ORF7a	82	V82A	gTt	gCt	835	835	AY.52	0.679967
ORF7a	82	V82A	gTt	gCt	825	825	AY.99	0.865687
ORF7a	82	V82A	gTt	gCt	808	808	AY.79	0.978208
ORF7a	82	V82F	Gtt	Ttt	793	793	All	0.000152
ORF7a	82	V82A	gTt	gCt	792	792	AY.77	0.892897
ORF7a	82	V82A	gTt	gCt	788	788	AY.46.1	0.809035
ORF7a	82	V82A	gTt	gCt	770	770	AY.66	0.823529
ORF7a	82	V82A	gTt	gCt	731	731	AY.11	0.978581
ORF7a	82	V82A	gTt	gCt	716	716	AY.72	0.97415
ORF7a	82	V82A	gTt	gCt	708	708	AY.120.2	0.910026
ORF7a	82	V82A	gTt	gCt	692	692	AY.19	0.789054
ORF7a	82	V82A	gTt	gCt	628	628	AY.78	0.967643
ORF7a	82	V82A	gTt	gCt	623	623	AY.99.1	0.967391
ORF7a	82	V82A	gTt	gCt	617	617	AY.39.2	0.950693
ORF7a	82	V82A	gTt	gCt	616	616	AY.82	0.835821
ORF7a	82	V82F	Gtt	Ttt	578	578	B.1.1.7	0.000517
ORF7a	82	V82T	GTt	ACt	569	571	All	0.000109
ORF7a	82	V82T	GTT	ACA	1	571	All	0
ORF7a	82	V82T	GTT	ACC	1	571	All	0
ORF7a	82	V82A	gTt	gCt	570	570	AY.56	0.914928
ORF7a	82	V82A	gTt	gCt	557	557	AY.97	0.947279
ORF7a	82	V82A	gTt	gCt	529	529	AY.28	1
ORF7a	82	V82A	gTt	gCt	505	505	AY.9.2.1	0.998024
ORF7a	82	V82A	gTt	gCt	503	503	AY.21	0.954459
ORF7a	82	V82A	gTt	gCt	500	500	B.1	0.00458
ORF7a	82	V82A	gTt	gCt	464	464	AY.22	0.970711
ORF7a	82	V82A	gTt	gCt	463	463	AY.80	0.522573
ORF7a	82	V82A	gTt	gCt	458	458	AY.81	0.912351
ORF7a	82	V82A	gTt	gCt	457	457	AY.83	0.787931
ORF7a	82	V82A	gTt	gCt	446	446	AY.15	0.991111
ORF7a	82	V82A	gTt	gCt	435	435	AY.104	0.863095
ORF7a	82	V82A	gTt	gCt	382	382	AY.5.2	0.940887
ORF7a	82	V82del	GTT	---	379	379	AY.4.2	0.00822
ORF7a	82	V82V	gtT	gtC	315	335	All	0.00006
ORF7a	82	V82V	gtT	gtG	12	335	All	0.000002
ORF7a	82	V82V	gtT	gtA	8	335	All	0.000002
ORF7a	82	V82del1	Gtt	-tt	263	326	All	0.00005
ORF7a	82	V82del1	gTt	g-t	20	326	All	0.000004
ORF7a	82	V82del1	gTT	gC-	17	326	All	0.000003
ORF7a	82	V82del1	gtT	gt-	11	326	All	0.000002
ORF7a	82	V82del1	GTt	-Ct	7	326	All	0.000001
ORF7a	82	V82del1	gTT	g-C	2	326	All	0
ORF7a	82	V82del1	GTT	-NN	2	326	All	0
ORF7a	82	V82del1	GTT	-CA	2	326	All	0
ORF7a	82	V82del1	GtT	-tA	1	326	All	0
ORF7a	82	V82del1	GtT	-tN	1	326	All	0
ORF7a	82	V82T	GTt	ACt	306	306	AY.4	0.000476
ORF7a	82	V82A	gTt	gCt	295	295	B.1.617.3	0.880597
ORF7a	82	V82A	gTt	gCt	271	271	AY.96	0.562241
ORF7a	82	V82A	gTt	gCt	254	254	AY.5.1	0.954887
ORF7a	82	V82S	GTt	TCt	251	252	AY.4	0.000391
ORF7a	82	V82S	GTt	AGt	1	252	AY.4	0.000002
ORF7a	82	V82A	gTt	gCt	234	234	AY.91.1	0.95122
ORF7a	82	V82del2	GTt	--t	185	226	All	0.000035
ORF7a	82	V82del2	gTT	g--	22	226	All	0.000004
ORF7a	82	V82del2	GTT	--N	19	226	All	0.000004
ORF7a	82	V82del	GTT	---	225	225	AY.103	0.001397
ORF7a	82	V82del	GTT	---	215	215	B.1.617.2	0.00081
ORF7a	82	V82A	gTt	gCt	207	207	AY.49	0.661342
ORF7a	82	V82A	gTt	gCt	202	202	AY.76	0.975845
ORF7a	82	V82A	gTt	gCt	196	196	AY.89	0.960784
ORF7a	82	V82del	GTT	---	179	179	B.1.177.21	0.013688
ORF7a	82	V82V	gtT	gtC	168	168	B.1.177.52	0.295255
ORF7a	82	V82del	GTT	---	167	167	AY.39	0.004127
ORF7a	82	V82I	Gtt	Att	160	164	All	0.000031
ORF7a	82	V82I	GtT	AtA	4	164	All	0.000001
ORF7a	82	V82del	GTT	---	138	138	AY.44	0.00084
ORF7a	82	V82del	GTT	---	128	128	AY.43	0.000567
ORF7a	82	V82A	gTt	gCt	122	122	AY.115	0.635417
ORF7a	82	V82A	gTt	gCt	120	121	B.1.1.7	0.000107
ORF7a	82	V82A	gTT	gCC	1	121	B.1.1.7	0.000001
ORF7a	82	V82S	GTt	TCt	121	121	B.1.617.2	0.000456
ORF7a	82	V82del	GTT	---	112	112	AY.100	0.005153
ORF7a	82	V82del	GTT	---	112	112	AY.29	0.001767
ORF7a	82	V82D	gTt	gAt	107	108	All	0.00002
ORF7a	82	V82D	gTT	gAC	1	108	All	0
ORF7a	82	V82S	GTt	TCt	101	101	AY.26	0.002859
ORF7a	82	V82del1	Gtt	-tt	90	100	AY.4	0.00014
ORF7a	82	V82del1	gTT	gC-	5	100	AY.4	0.000008
ORF7a	82	V82del1	GTt	-Ct	5	100	AY.4	0.000008
ORF7a	82	V82A	gTt	gCt	99	99	AY.18	1
ORF7a	82	V82del	GTT	---	96	96	AY.3	0.000955
ORF7a	82	V82S	GTt	TCt	89	89	AY.44	0.000542
ORF7a	82	V82A	gTt	gCt	83	83	AY.17	0.680328
ORF7a	82	V82del1	Gtt	-tt	70	78	B.1.1.7	0.000063
ORF7a	82	V82del1	gTt	g-t	5	78	B.1.1.7	0.000004
ORF7a	82	V82del1	gtT	gt-	3	78	B.1.1.7	0.000003
ORF7a	82	V82del	GTT	---	76	76	AY.42	0.003057
ORF7a	82	V82del	GTT	---	72	72	AY.25	0.000433
ORF7a	82	V82S	GTt	TCt	72	72	AY.43	0.000319
ORF7a	82	V82del2	GTt	--t	56	70	AY.4	0.000087
ORF7a	82	V82del2	GTT	--N	14	70	AY.4	0.000022
ORF7a	82	V82del	GTT	---	70	70	AY.98	0.00553
ORF7a	82	V82del	GTT	---	55	55	AY.120	0.002045
ORF7a	82	V82del	GTT	---	55	55	B.1.177	0.000724
ORF7a	82	V82del	GTT	---	55	55	B.1.2	0.000484
ORF7a	82	V82T	GTt	ACt	54	54	AY.37	0.017067
ORF7a	82	V82A	gTt	gCt	52	52	AY.31	0.962963
ORF7a	82	V82del1	Gtt	-tt	51	51	AY.26	0.001444
ORF7a	82	V82del	GTT	---	51	51	B.1.526	0.001199
ORF7a	82	V82T	GTt	ACt	49	49	AY.44	0.000298
ORF7a	82	V82A	gTt	gCt	49	49	B.1.214	0.179487
ORF7a	82	V82F	Gtt	Ttt	48	48	B.1.2	0.000423
ORF7a	82	V82T	GTt	ACt	44	44	B.1.617.2	0.000166
ORF7a	82	V82V	gtT	gtC	43	43	B.1.177.81	0.008141
ORF7a	82	V82F	Gtt	Ttt	41	41	B.1.609	0.019655
ORF7a	82	V82del	GTT	---	40	40	AY.26	0.001132
ORF7a	82	V82del	GTT	---	40	40	B.1.1.284	0.004296
ORF7a	82	V82S	GTt	TCt	39	39	AY.103	0.000242
ORF7a	82	V82A	gTt	gCt	39	39	B.1.1	0.000707
ORF7a	82	V82del	GTT	---	37	37	B.1.621	0.003275
ORF7a	82	V82F	Gtt	Ttt	36	36	B.1.177	0.000474
ORF7a	82	V82D	gTt	gAt	35	35	B.1.177.21	0.002676
ORF7a	82	V82P	GTt	CCt	34	34	All	0.000007
ORF7a	82	V82del	GTT	---	34	34	B.1	0.000311
ORF7a	82	V82del	GTT	---	33	33	AY.3.1	0.002814
ORF7a	82	V82I	Gtt	Att	33	33	B.1.1.7	0.00003
ORF7a	82	V82del	GTT	---	32	32	P.1	0.000504
ORF7a	82	V82S	GTt	TCt	31	31	AY.102	0.000822
ORF7a	82	V82S	GTt	TCt	31	31	AY.14	0.002728
ORF7a	82	V82del	GTT	---	31	31	AY.46.6	0.002238
ORF7a	82	V82del	GTT	---	30	30	AY.119	0.001059
ORF7a	82	V82S	GTt	TCt	28	28	AY.27	0.001812
ORF7a	82	V82V	gtT	gtC	28	28	B.1.160	0.000873
ORF7a	82	V82A	gTt	gCt	27	27	B	0.003451
ORF7a	82	V82del	GTT	---	26	26	AY.36	0.003854
ORF7a	82	V82V	gtT	gtC	21	26	B.1.1.7	0.000019
ORF7a	82	V82V	gtT	gtG	3	26	B.1.1.7	0.000003
ORF7a	82	V82V	gtT	gtA	2	26	B.1.1.7	0.000002
ORF7a	82	V82del	GTT	---	25	25	B.1.1.214	0.001386
ORF7a	82	V82del	GTT	---	24	24	AY.7.2	0.013423
ORF7a	82	V82T	GTt	ACt	23	23	AY.103	0.000143
ORF7a	82	V82del	GTT	---	23	23	AY.6	0.000946
ORF7a	82	V82T	GTt	ACt	22	22	AY.119	0.000777
ORF7a	82	V82I	Gtt	Att	22	22	AY.26	0.000623
ORF7a	82	V82del2	GTt	--t	21	22	B.1.1.7	0.000019
ORF7a	82	V82del2	gTT	g--	1	22	B.1.1.7	0.000001
ORF7a	82	V82del	GTT	---	22	22	B.1.637	0.001608
ORF7a	82	V82L	Gtt	Ctt	21	21	All	0.000004
ORF7a	82	V82G	gTt	gGt	20	21	All	0.000004
ORF7a	82	V82G	gTT	gGC	1	21	All	0
ORF7a	82	V82del	GTT	---	21	21	AY.5	0.000434
ORF7a	82	V82del	GTT	---	21	21	AY.75	0.001176
ORF7a	82	V82del	GTT	---	20	20	AY.20	0.000777
ORF7a	82	V82del	GTT	---	20	20	AY.47	0.000622
ORF7a	82	V82del	GTT	---	20	20	B.1.351	0.000595
ORF7a	82	V82A	gTt	gCt	20	20	B.1.351	0.000595
ORF7a	82	V82P	GTt	CCt	19	19	AY.103	0.000118
ORF7a	82	V82del	GTT	---	19	19	AY.46.4	0.003126
ORF7a	82	V82del	GTT	---	19	19	AY.98.1	0.00092
ORF7a	82	V82T	GTt	ACt	16	16	AY.120	0.000595
ORF7a	82	V82del	GTT	---	16	16	B.1.160	0.000499
ORF7a	82	V82del	GTT	---	16	16	B.1.429	0.000376
ORF7a	82	V82del	GTT	---	16	16	B.1.525	0.001811
ORF7a	82	V82I	Gtt	Att	15	15	AY.116	0.004302
ORF7a	82	V82del	GTT	---	15	15	AY.117	0.001268
ORF7a	82	V82del	GTT	---	15	15	AY.30	0.005936
ORF7a	82	V82del	GTT	---	14	14	B.1.1.258	0.045603
ORF7a	82	V82del	GTT	---	13	13	AY.23	0.000907
ORF7a	82	V82del2	gTT	g--	13	13	AY.29	0.000205
ORF7a	82	V82S	GTt	TCt	13	13	AY.39	0.000321
ORF7a	82	V82T	GTt	ACt	12	12	AY.102	0.000318
ORF7a	82	V82D	gTt	gAt	12	12	AY.25	0.000072
ORF7a	82	V82A	gTt	gCt	12	12	B.1.177	0.000158
ORF7a	82	V82del	GTT	---	12	12	B.1.324	0.019262
ORF7a	82	V82del	GTT	---	12	12	C.37	0.001393
ORF7a	82	V82A	gTt	gCt	12	12	P.1	0.000189
ORF7a	82	V82del	GTT	---	12	12	R.1	0.00108
ORF7a	82	V82del	GTT	---	11	11	AY.110	0.00124
ORF7a	82	V82del	GTT	---	11	11	AY.121	0.001488
ORF7a	82	V82S	GTt	TCt	11	11	AY.20	0.000428
ORF7a	82	V82D	gTt	gAt	11	11	AY.39	0.000272
ORF7a	82	V82I	Gtt	Att	11	11	AY.39.1	0.000436
ORF7a	82	V82D	gTt	gAt	11	11	AY.44	0.000067
ORF7a	82	V82del	GTT	---	11	11	AY.71	0.005226
ORF7a	82	V82del	GTT	---	11	11	B.1.1	0.0002
ORF7a	82	V82A	gTt	gCt	11	11	B.1.621	0.000974
ORF7a	82	V82del	GTT	---	11	11	N.7	0.323529
ORF7a	82	V82del2	GTt	--t	10	10	AY.20	0.000389
ORF7a	82	V82del2	GTt	--t	10	10	AY.3	0.000099
ORF7a	82	V82del	GTT	---	10	10	AY.9	0.000676
ORF7a	82	V82A	gTt	gCt	10	10	B.1.619.1	0.006414
ORF7a	82	V82del	GTT	---	10	10	Q.8	0.001649
ORF7a	82	V82N	GTt	AAt	8	9	All	0.000002
ORF7a	82	V82N	GTT	AAC	1	9	All	0
ORF7a	82	V82del	GTT	---	9	9	AY.118	0.000564
ORF7a	82	V82del2	GTt	--t	8	9	AY.39	0.000198
ORF7a	82	V82del2	GTT	--N	1	9	AY.39	0.000025
ORF7a	82	V82del	GTT	---	9	9	AY.39.1	0.000357
ORF7a	82	V82S	GTt	TCt	9	9	AY.5.3	0.003036
ORF7a	82	V82A	gTt	gCt	9	9	B.1.177.73	0.005096
ORF7a	82	V82del	GTT	---	9	9	B.1.596	0.000784
ORF7a	82	V82A	gTt	gCt	9	9	B.1.596	0.000784
ORF7a	82	V82del	GTT	---	9	9	L.1	0.017143
ORF7a	82	V82del1	gTT	gC-	7	8	AY.103	0.000043
ORF7a	82	V82del1	Gtt	-tt	1	8	AY.103	0.000006
ORF7a	82	V82del1	Gtt	-tt	8	8	AY.116	0.002294
ORF7a	82	V82S	GTt	TCt	8	8	AY.119	0.000282
ORF7a	82	V82S	GTt	TCt	8	8	AY.4.2	0.000174
ORF7a	82	V82del2	GTt	--t	6	8	AY.43	0.000027
ORF7a	82	V82del2	gTT	g--	1	8	AY.43	0.000004
ORF7a	82	V82del2	GTT	--N	1	8	AY.43	0.000004
ORF7a	82	V82del2	GTt	--t	5	8	AY.44	0.00003
ORF7a	82	V82del2	gTT	g--	3	8	AY.44	0.000018
ORF7a	82	V82del	GTT	---	8	8	AY.99.2	0.000737
ORF7a	82	V82F	Gtt	Ttt	8	8	B.1	0.000073
ORF7a	82	V82del	GTT	---	8	8	B.1.1.231	0.024768
ORF7a	82	V82A	gTt	gCt	8	8	B.1.2	0.00007
ORF7a	82	V82S	GTt	TCt	5	7	AY.100	0.00023
ORF7a	82	V82S	GTt	AGt	1	7	AY.100	0.000046
ORF7a	82	V82S	GTT	AGC	1	7	AY.100	0.000046
ORF7a	82	V82S	GTt	TCt	7	7	AY.106	0.002344
ORF7a	82	V82T	GTt	ACt	7	7	AY.25	0.000042
ORF7a	82	V82del	GTT	---	7	7	AY.35	0.001631
ORF7a	82	V82G	gTt	gGt	7	7	AY.44	0.000043
ORF7a	82	V82del2	GTt	--t	7	7	AY.47	0.000218
ORF7a	82	V82del	GTT	---	7	7	AY.9.2	0.000257
ORF7a	82	V82A	gTt	gCt	7	7	B.1.160	0.000218
ORF7a	82	V82A	gTt	gCt	7	7	B.1.628	0.002467
ORF7a	82	V82F	Gtt	Ttt	7	7	P.1	0.00011
ORF7a	82	V82H	GTt	CAt	6	6	All	0.000001
ORF7a	82	V82del2	GTt	--t	6	6	AY.103	0.000037
ORF7a	82	V82D	gTt	gAt	6	6	AY.120	0.000223
ORF7a	82	V82L	Gtt	Ctt	6	6	AY.3	0.00006
ORF7a	82	V82del	GTT	---	6	6	AY.33	0.000401
ORF7a	82	V82del	GTT	---	6	6	AY.34	0.000582
ORF7a	82	V82del1	Gtt	-tt	6	6	AY.4.2	0.00013
ORF7a	82	V82del1	GTT	-CA	2	6	AY.43	0.000009
ORF7a	82	V82del1	GTT	-NN	1	6	AY.43	0.000004
ORF7a	82	V82del1	GtT	-tA	1	6	AY.43	0.000004
ORF7a	82	V82del1	gTt	g-t	1	6	AY.43	0.000004
ORF7a	82	V82del1	gTT	gC-	1	6	AY.43	0.000004
ORF7a	82	V82del	GTT	---	6	6	AY.45	0.00073
ORF7a	82	V82del	GTT	---	6	6	AY.54	0.000572
ORF7a	82	V82S	GTt	TCt	6	6	AY.69	0.00112
ORF7a	82	V82S	GTt	TCt	6	6	AY.9.1	0.000502
ORF7a	82	V82I	Gtt	Att	6	6	B.1	0.000055
ORF7a	82	V82del	GTT	---	6	6	B.1.1.519	0.000238
ORF7a	82	V82N	GTt	AAt	6	6	B.1.1.7	0.000005
ORF7a	82	V82H	GTt	CAt	6	6	B.1.1.7	0.000005
ORF7a	82	V82I	Gtt	Att	6	6	B.1.234	0.000792
ORF7a	82	V82V	gtT	gtC	6	6	B.1.427	0.000303
ORF7a	82	V82A	gTt	gCt	6	6	B.1.576	0.00544
ORF7a	82	V82del2	GTt	--t	6	6	B.1.617.2	0.000023
ORF7a	82	V82D	gTt	gAt	6	6	B.1.617.2	0.000023
ORF7a	82	V82del	GTT	---	6	6	P.1.15	0.001394
ORF7a	82	V82del	GTT	---	5	5	AY.106	0.001674
ORF7a	82	V82del	GTT	---	5	5	AY.114	0.001156
ORF7a	82	V82del2	GTt	--t	5	5	AY.116	0.001434
ORF7a	82	V82S	GTt	TCt	5	5	AY.25	0.00003
ORF7a	82	V82del1	gTt	g-t	3	5	AY.39	0.000074
ORF7a	82	V82del1	Gtt	-tt	2	5	AY.39	0.000049
ORF7a	82	V82S	GTt	TCt	5	5	AY.5	0.000103
ORF7a	82	V82del	GTT	---	5	5	AY.80	0.005643
ORF7a	82	V82V	gtT	gtC	4	5	B.1	0.000037
ORF7a	82	V82V	gtT	gtG	1	5	B.1	0.000009
ORF7a	82	V82I	Gtt	Att	5	5	B.1.1	0.000091
ORF7a	82	V82F	Gtt	Ttt	5	5	B.1.1	0.000091
ORF7a	82	V82F	Gtt	Ttt	5	5	B.1.1.306	0.002192
ORF7a	82	V82A	gTt	gCt	5	5	B.1.1.317	0.002058
ORF7a	82	V82V	gtT	gtC	5	5	B.1.1.519	0.000199
ORF7a	82	V82L	Gtt	Ctt	5	5	B.1.1.7	0.000004
ORF7a	82	V82F	Gtt	Ttt	5	5	B.1.351	0.000149
ORF7a	82	V82del	GTT	---	5	5	B.1.375	0.004098
ORF7a	82	V82del	GTT	---	5	5	B.1.427	0.000252
ORF7a	82	V82A	gTt	gCt	5	5	B.1.623	0.002682
ORF7a	82	V82del1	Gtt	-tt	5	5	B.1.70	0.121951
ORF7a	82	V82F	Gtt	Ttt	5	5	P.1.14	0.000239
ORF7a	82	V82del	GTT	---	5	5	Q.1	0.000632
ORF7a	82	V82A	gTt	gCt	4	4	A.2.5	0.001996
ORF7a	82	V82del	GTT	---	4	4	AY.113	0.00057
ORF7a	82	V82del	GTT	---	4	4	AY.120.1	0.001284
ORF7a	82	V82del	GTT	---	4	4	AY.14	0.000352
ORF7a	82	V82L	Gtt	Ctt	4	4	AY.17	0.032787
ORF7a	82	V82S	GTt	TCt	4	4	AY.23.1	0.001669
ORF7a	82	V82del2	GTt	--t	4	4	AY.25	0.000024
ORF7a	82	V82S	GTt	TCt	4	4	AY.29	0.000063
ORF7a	82	V82del	GTT	---	4	4	AY.29.1	0.000882
ORF7a	82	V82S	GTt	TCt	4	4	AY.3	0.00004
ORF7a	82	V82D	gTt	gAt	4	4	AY.30	0.001583
ORF7a	82	V82V	gtT	gtC	4	4	AY.39	0.000099
ORF7a	82	V82P	GTt	CCt	4	4	AY.4	0.000006
ORF7a	82	V82del	GTT	---	4	4	AY.4.5	0.00043
ORF7a	82	V82T	GTt	ACt	4	4	AY.43	0.000018
ORF7a	82	V82del	GTT	---	4	4	AY.46	0.000416
ORF7a	82	V82S	GTt	TCt	4	4	AY.51	0.003636
ORF7a	82	V82del	GTT	---	4	4	AY.61	0.000419
ORF7a	82	V82del	GTT	---	4	4	AY.68	0.001095
ORF7a	82	V82T	GTt	ACt	4	4	AY.93	0.001092
ORF7a	82	V82S	GTt	TCt	4	4	AY.99.2	0.000369
ORF7a	82	V82del	GTT	---	4	4	B.1.1.25	0.002274
ORF7a	82	V82A	gTt	gCt	4	4	B.1.1.432	0.005063
ORF7a	82	V82F	Gtt	Ttt	4	4	B.1.160	0.000125
ORF7a	82	V82I	Gtt	Att	4	4	B.1.177	0.000053
ORF7a	82	V82V	gtT	gtC	4	4	B.1.177	0.000053
ORF7a	82	V82V	gtT	gtC	4	4	B.1.177.44	0.002076
ORF7a	82	V82V	gtT	gtC	2	4	B.1.2	0.000018
ORF7a	82	V82V	gtT	gtG	2	4	B.1.2	0.000018
ORF7a	82	V82del	GTT	---	4	4	B.1.243	0.000278
ORF7a	82	V82A	gTt	gCt	4	4	B.1.375	0.003279
ORF7a	82	V82F	Gtt	Ttt	4	4	B.1.526	0.000094
ORF7a	82	V82F	Gtt	Ttt	4	4	B.1.596	0.000349
ORF7a	82	V82A	gTt	gCt	4	4	B.1.637	0.000292
ORF7a	82	V82A	gTt	gCt	4	4	C.37	0.000464
ORF7a	82	V82del2	GTt	--t	2	4	C.37	0.000232
ORF7a	82	V82del2	GTT	--N	1	4	C.37	0.000116
ORF7a	82	V82del2	gTT	g--	1	4	C.37	0.000116
ORF7a	82	V82A	gTt	gCt	4	4	P.1.17	0.000647
ORF7a	82	V82A	gTt	gCt	3	3	A	0.001161
ORF7a	82	V82del	GTT	---	3	3	A	0.001161
ORF7a	82	V82F	Gtt	Ttt	3	3	AE.8	0.001467
ORF7a	82	V82K	GTT	AAA	3	3	All	0.000001
ORF7a	82	V82T	GTt	ACt	2	3	AY.100	0.000092
ORF7a	82	V82T	GTT	ACC	1	3	AY.100	0.000046
ORF7a	82	V82S	GTt	TCt	3	3	AY.117	0.000254
ORF7a	82	V82del	GTT	---	3	3	AY.12	0.000948
ORF7a	82	V82I	Gtt	Att	2	3	AY.120	0.000074
ORF7a	82	V82I	GtT	AtA	1	3	AY.120	0.000037
ORF7a	82	V82del	GTT	---	3	3	AY.13	0.000483
ORF7a	82	V82del	GTT	---	3	3	AY.24	0.001293
ORF7a	82	V82del2	GTt	--t	3	3	AY.29.1	0.000662
ORF7a	82	V82del1	gTT	gC-	1	3	AY.3	0.00001
ORF7a	82	V82del1	Gtt	-tt	1	3	AY.3	0.00001
ORF7a	82	V82del1	GTt	-Ct	1	3	AY.3	0.00001
ORF7a	82	V82del	GTT	---	3	3	AY.37	0.000948
ORF7a	82	V82S	GTt	TCt	3	3	AY.4.5	0.000322
ORF7a	82	V82del1	gTT	gC-	2	3	AY.44	0.000012
ORF7a	82	V82del1	Gtt	-tt	1	3	AY.44	0.000006
ORF7a	82	V82S	GTt	TCt	3	3	AY.45	0.000365
ORF7a	82	V82D	gTt	gAt	3	3	AY.47	0.000093
ORF7a	82	V82S	GTt	TCt	3	3	AY.47	0.000093
ORF7a	82	V82del2	GTt	--t	3	3	AY.5	0.000062
ORF7a	82	V82T	GTt	ACt	3	3	AY.5.4	0.00083
ORF7a	82	V82S	GTt	TCt	3	3	AY.5.4	0.00083
ORF7a	82	V82del	GTT	---	3	3	AY.53	0.000863
ORF7a	82	V82del	GTT	---	3	3	AY.7	0.000588
ORF7a	82	V82del	GTT	---	3	3	AY.7.1	0.000338
ORF7a	82	V82del	GTT	---	3	3	AY.88	0.002653
ORF7a	82	V82S	GTt	TCt	3	3	AY.98	0.000237
ORF7a	82	V82A	gTt	gCt	3	3	AZ.2	0.002463
ORF7a	82	V82D	gTt	gAt	3	3	B.1	0.000027
ORF7a	82	V82del1	Gtt	-tt	3	3	B.1.1	0.000054
ORF7a	82	V82del	GTT	---	3	3	B.1.1.121	0.007282
ORF7a	82	V82del	GTT	---	3	3	B.1.1.170	0.003741
ORF7a	82	V82F	Gtt	Ttt	3	3	B.1.1.519	0.000119
ORF7a	82	V82del	GTT	---	3	3	B.1.214.2	0.001799
ORF7a	82	V82del	GTT	---	3	3	B.1.234	0.000396
ORF7a	82	V82I	Gtt	Att	3	3	B.1.351	0.000089
ORF7a	82	V82del	GTT	---	3	3	B.1.351.2	0.000908
ORF7a	82	V82I	Gtt	Att	3	3	B.1.425	0.008982
ORF7a	82	V82V	gtT	gtC	3	3	B.1.429	0.000071
ORF7a	82	V82A	gTt	gCt	3	3	B.1.429	0.000071
ORF7a	82	V82I	Gtt	Att	3	3	B.1.429	0.000071
ORF7a	82	V82del2	GTt	--t	3	3	B.1.526	0.000071
ORF7a	82	V82I	Gtt	Att	3	3	B.1.565	0.002431
ORF7a	82	V82del	GTT	---	3	3	B.1.575	0.00091
ORF7a	82	V82P	GTt	CCt	3	3	B.1.617.2	0.000011
ORF7a	82	V82del1	gTT	g-C	1	3	B.1.617.2	0.000004
ORF7a	82	V82del1	GTt	-Ct	1	3	B.1.617.2	0.000004
ORF7a	82	V82del1	gTt	g-t	1	3	B.1.617.2	0.000004
ORF7a	82	V82V	gtT	gtC	3	3	B.1.621	0.000266
ORF7a	82	V82A	gTt	gCt	3	3	B.1.621.1	0.001517
ORF7a	82	V82del	GTT	---	3	3	B.1.626	0.017143
ORF7a	82	V82del	GTT	---	3	3	C.12	0.021583
ORF7a	82	V82I	Gtt	Att	3	3	D.2	0.000225
ORF7a	82	V82del	GTT	---	2	2		0.111111
ORF7a	82	V82del	GTT	---	2	2	A.28	0.005291
ORF7a	82	V82X	GTT	TAA	2	2	All	0
ORF7a	82	V82A	gTt	gCt	2	2	AU.3	0.004219
ORF7a	82	V82del2	GTt	--t	2	2	AY.100	0.000092
ORF7a	82	V82G	gTt	gGt	1	2	AY.100	0.000046
ORF7a	82	V82G	gTT	gGC	1	2	AY.100	0.000046
ORF7a	82	V82del	GTT	---	2	2	AY.102	0.000053
ORF7a	82	V82del2	GTt	--t	2	2	AY.102	0.000053
ORF7a	82	V82D	gTt	gAt	2	2	AY.103	0.000012
ORF7a	82	V82S	GTt	TCt	2	2	AY.107	0.000932
ORF7a	82	V82del	GTT	---	2	2	AY.108	0.002205
ORF7a	82	V82del	GTT	---	2	2	AY.109	0.001479
ORF7a	82	V82del	GTT	---	2	2	AY.111	0.000366
ORF7a	82	V82S	GTt	TCt	2	2	AY.111	0.000366
ORF7a	82	V82del1	Gtt	-tt	2	2	AY.113	0.000285
ORF7a	82	V82T	GTt	ACt	2	2	AY.117	0.000169
ORF7a	82	V82V	gtT	gtA	2	2	AY.120	0.000074
ORF7a	82	V82del1	Gtt	-tt	2	2	AY.120.1	0.000642
ORF7a	82	V82S	GTt	TCt	2	2	AY.121	0.000271
ORF7a	82	V82P	GTt	CCt	2	2	AY.121	0.000271
ORF7a	82	V82del	GTT	---	2	2	AY.19	0.002281
ORF7a	82	V82del	GTT	---	2	2	AY.27	0.000129
ORF7a	82	V82I	Gtt	Att	2	2	AY.3	0.00002
ORF7a	82	V82del2	GTt	--t	2	2	AY.36	0.000296
ORF7a	82	V82D	gTt	gAt	2	2	AY.4	0.000003
ORF7a	82	V82del2	gTT	g--	1	2	AY.4.2.1	0.000149
ORF7a	82	V82del2	GTt	--t	1	2	AY.4.2.1	0.000149
ORF7a	82	V82G	gTt	gGt	2	2	AY.43	0.000009
ORF7a	82	V82S	GTt	TCt	2	2	AY.46	0.000208
ORF7a	82	V82T	GTt	ACt	2	2	AY.46	0.000208
ORF7a	82	V82S	GTt	TCt	2	2	AY.46.4	0.000329
ORF7a	82	V82S	GTt	TCt	2	2	AY.50	0.001599
ORF7a	82	V82I	Gtt	Att	1	2	AY.59	0.00053
ORF7a	82	V82I	GtT	AtA	1	2	AY.59	0.00053
ORF7a	82	V82S	GTt	TCt	2	2	AY.6	0.000082
ORF7a	82	V82S	GTt	TCt	2	2	AY.61	0.00021
ORF7a	82	V82del2	GTt	--t	2	2	AY.65	0.001066
ORF7a	82	V82del1	Gtt	-tt	2	2	AY.7	0.000392
ORF7a	82	V82del2	GTt	--t	2	2	AY.7	0.000392
ORF7a	82	V82S	GTt	TCt	2	2	AY.75	0.000112
ORF7a	82	V82del	GTT	---	2	2	AY.75.1	0.000361
ORF7a	82	V82S	GTt	TCt	2	2	AY.84	0.000875
ORF7a	82	V82T	GTt	ACt	2	2	AY.85	0.000854
ORF7a	82	V82del	GTT	---	2	2	AY.85	0.000854
ORF7a	82	V82S	GTt	TCt	2	2	AY.86	0.00166
ORF7a	82	V82del	GTT	---	2	2	AY.9.1	0.000167
ORF7a	82	V82S	GTt	TCt	2	2	AY.9.2	0.000073
ORF7a	82	V82del2	GTt	--t	2	2	AY.90	0.001369
ORF7a	82	V82del	GTT	---	2	2	AY.91	0.001461
ORF7a	82	V82del	GTT	---	2	2	AY.92	0.000575
ORF7a	82	V82del2	GTt	--t	1	2	AY.98	0.000079
ORF7a	82	V82del2	gTT	g--	1	2	AY.98	0.000079
ORF7a	82	V82S	GTt	TCt	2	2	AY.98.1	0.000097
ORF7a	82	V82del	GTT	---	2	2	AY.99	0.002099
ORF7a	82	V82T	GTt	ACt	2	2	AY.99.1	0.003106
ORF7a	82	V82del	GTT	---	2	2	B	0.000256
ORF7a	82	V82del	GTT	---	2	2	B.1.1.220	0.003717
ORF7a	82	V82A	gTt	gCt	2	2	B.1.1.318	0.000604
ORF7a	82	V82A	gTt	gCt	2	2	B.1.1.326	0.003521
ORF7a	82	V82del	GTT	---	2	2	B.1.1.37	0.000386
ORF7a	82	V82A	gTT	gCC	1	2	B.1.1.377	0.001381
ORF7a	82	V82A	gTt	gCt	1	2	B.1.1.377	0.001381
ORF7a	82	V82del1	Gtt	-tt	2	2	B.1.1.519	0.000079
ORF7a	82	V82del	GTT	---	2	2	B.1.1.521	0.010695
ORF7a	82	V82A	gTt	gCt	2	2	B.1.1.523	0.003125
ORF7a	82	V82F	Gtt	Ttt	2	2	B.1.1.528	0.009615
ORF7a	82	V82D	gTt	gAt	2	2	B.1.1.7	0.000002
ORF7a	82	V82del	GTT	---	2	2	B.1.1.70	0.000682
ORF7a	82	V82A	gTt	gCt	2	2	B.1.157	0.00597
ORF7a	82	V82I	Gtt	Att	2	2	B.1.160	0.000062
ORF7a	82	V82A	gTt	gCt	2	2	B.1.170	0.008621
ORF7a	82	V82del	GTT	---	2	2	B.1.177.10	0.001756
ORF7a	82	V82del	GTT	---	2	2	B.1.177.15	0.001262
ORF7a	82	V82K	GTT	AAA	2	2	B.1.177.21	0.000153
ORF7a	82	V82del1	Gtt	-tt	2	2	B.1.177.55	0.004662
ORF7a	82	V82del	GTT	---	2	2	B.1.177.60	0.000437
ORF7a	82	V82del	GTT	---	2	2	B.1.177.81	0.000379
ORF7a	82	V82del	GTT	---	2	2	B.1.177.86	0.000367
ORF7a	82	V82del	GTT	---	2	2	B.1.221	0.000142
ORF7a	82	V82I	Gtt	Att	2	2	B.1.221.4	0.008333
ORF7a	82	V82A	gTt	gCt	2	2	B.1.243	0.000139
ORF7a	82	V82A	gTt	gCt	2	2	B.1.247	0.029851
ORF7a	82	V82A	gTt	gCt	2	2	B.1.258.11	0.000793
ORF7a	82	V82del	GTT	---	2	2	B.1.258.11	0.000793
ORF7a	82	V82V	gtT	gtC	2	2	B.1.305	0.004301
ORF7a	82	V82del1	gtT	gt-	2	2	B.1.351.3	0.001753
ORF7a	82	V82del	GTT	---	2	2	B.1.36	0.000292
ORF7a	82	V82I	Gtt	Att	2	2	B.1.36.1	0.002281
ORF7a	82	V82A	gTt	gCt	2	2	B.1.416.1	0.003125
ORF7a	82	V82del2	GTt	--t	2	2	B.1.427	0.000101
ORF7a	82	V82A	gTt	gCt	2	2	B.1.427	0.000101
ORF7a	82	V82F	Gtt	Ttt	2	2	B.1.429	0.000047
ORF7a	82	V82A	gTt	gCt	2	2	B.1.466.2	0.000782
ORF7a	82	V82L	Gtt	Ctt	2	2	B.1.497	0.00063
ORF7a	82	V82del	GTT	---	2	2	B.1.499	0.002101
ORF7a	82	V82I	Gtt	Att	2	2	B.1.517	0.000854
ORF7a	82	V82F	Gtt	Ttt	2	2	B.1.575.1	0.004878
ORF7a	82	V82F	Gtt	Ttt	2	2	B.1.577	0.001375
ORF7a	82	V82del	GTT	---	2	2	B.1.595	0.000522
ORF7a	82	V82A	gTt	gCt	2	2	B.1.595	0.000522
ORF7a	82	V82del1	Gtt	-tt	2	2	B.1.596	0.000174
ORF7a	82	V82A	gTt	gCt	2	2	B.1.604	0.034483
ORF7a	82	V82del1	gTt	g-t	2	2	B.1.617.1	0.000258
ORF7a	82	V82S	GTt	TCt	2	2	B.1.617.1	0.000258
ORF7a	82	V82A	gTt	gCt	2	2	B.1.619	0.001742
ORF7a	82	V82V	gtT	gtC	2	2	B.1.621.1	0.001012
ORF7a	82	V82F	Gtt	Ttt	2	2	C.36.3	0.001134
ORF7a	82	V82F	Gtt	Ttt	2	2	D.2	0.00015
ORF7a	82	V82A	gTt	gCt	2	2	P.1.12	0.000968
ORF7a	82	V82del	GTT	---	2	2	P.1.14	0.000096
ORF7a	82	V82I	GtT	AtA	2	2	P.1.17.1	0.00175
ORF7a	82	V82A	gTt	gCt	2	2	P.1.7	0.000639
ORF7a	82	V82F	Gtt	Ttt	2	2	P.1.7	0.000639
ORF7a	82	V82I	Gtt	Att	2	2	P.2	0.000373
ORF7a	82	V82F	Gtt	Ttt	2	2	P.6	0.006289
ORF7a	82	V82A	gTt	gCt	1	1		0.055556
ORF7a	82	V82del	GTT	---	1	1	A.1	0.000282
ORF7a	82	V82del	GTT	---	1	1	A.2.2	0.001689
ORF7a	82	V82G	gTt	gGt	1	1	A.2.4	0.003367
ORF7a	82	V82N	GTT	AAC	1	1	A.2.5.1	0.004808
ORF7a	82	V82A	gTt	gCt	1	1	A.2.5.2	0.001572
ORF7a	82	V82del1	Gtt	-tt	1	1	A.23	0.010526
ORF7a	82	V82M	GtT	AtG	1	1	All	0
ORF7a	82	V82C	GTt	TGt	1	1	All	0
ORF7a	82	V82W	GTT	TGG	1	1	All	0
ORF7a	82	V82E	gTT	gAG	1	1	All	0
ORF7a	82	V82R	GTT	CGA	1	1	All	0
ORF7a	82	V82del1	Gtt	-tt	1	1	AU.3	0.00211
ORF7a	82	V82del	GTT	---	1	1	AY.101	0.00049
ORF7a	82	V82del1	gTT	g-C	1	1	AY.102	0.000027
ORF7a	82	V82G	gTt	gGt	1	1	AY.103	0.000006
ORF7a	82	V82I	Gtt	Att	1	1	AY.103	0.000006
ORF7a	82	V82del	GTT	---	1	1	AY.104	0.001984
ORF7a	82	V82T	GTt	ACt	1	1	AY.106	0.000335
ORF7a	82	V82S	GTt	TCt	1	1	AY.110	0.000113
ORF7a	82	V82T	GTt	ACt	1	1	AY.110	0.000113
ORF7a	82	V82del2	GTt	--t	1	1	AY.113	0.000142
ORF7a	82	V82S	GTt	TCt	1	1	AY.116	0.000287
ORF7a	82	V82T	GTt	ACt	1	1	AY.116	0.000287
ORF7a	82	V82del	GTT	---	1	1	AY.116.1	0.000311
ORF7a	82	V82T	GTt	ACt	1	1	AY.118	0.000063
ORF7a	82	V82S	GTt	TCt	1	1	AY.118	0.000063
ORF7a	82	V82del2	GTt	--t	1	1	AY.119	0.000035
ORF7a	82	V82P	GTt	CCt	1	1	AY.119	0.000035
ORF7a	82	V82S	GTt	TCt	1	1	AY.12	0.000316
ORF7a	82	V82S	GTt	TCt	1	1	AY.120	0.000037
ORF7a	82	V82del2	GTt	--t	1	1	AY.120	0.000037
ORF7a	82	V82del2	GTt	--t	1	1	AY.120.1	0.000321
ORF7a	82	V82T	GTt	ACt	1	1	AY.120.2	0.001285
ORF7a	82	V82D	gTt	gAt	1	1	AY.121	0.000135
ORF7a	82	V82S	GTt	TCt	1	1	AY.15	0.002222
ORF7a	82	V82del	GTT	---	1	1	AY.16	0.00038
ORF7a	82	V82del1	gTt	g-t	1	1	AY.16	0.00038
ORF7a	82	V82D	gTt	gAt	1	1	AY.16	0.00038
ORF7a	82	V82D	gTt	gAt	1	1	AY.23	0.00007
ORF7a	82	V82D	gTt	gAt	1	1	AY.24	0.000431
ORF7a	82	V82T	GTt	ACt	1	1	AY.29	0.000016
ORF7a	82	V82T	GTt	ACt	1	1	AY.3	0.00001
ORF7a	82	V82del2	GTt	--t	1	1	AY.3.1	0.000085
ORF7a	82	V82del1	gTT	gC-	1	1	AY.3.1	0.000085
ORF7a	82	V82S	GTt	TCt	1	1	AY.3.1	0.000085
ORF7a	82	V82X	GTT	TAA	1	1	AY.30	0.000396
ORF7a	82	V82P	GTt	CCt	1	1	AY.30	0.000396
ORF7a	82	V82S	GTt	TCt	1	1	AY.32	0.000532
ORF7a	82	V82S	GTt	TCt	1	1	AY.33	0.000067
ORF7a	82	V82G	gTt	gGt	1	1	AY.33	0.000067
ORF7a	82	V82S	GTt	TCt	1	1	AY.34	0.000097
ORF7a	82	V82del1	Gtt	-tt	1	1	AY.34	0.000097
ORF7a	82	V82del	GTT	---	1	1	AY.34.1	0.00051
ORF7a	82	V82S	GTt	TCt	1	1	AY.36	0.000148
ORF7a	82	V82del1	Gtt	-tt	1	1	AY.36	0.000148
ORF7a	82	V82S	GTt	TCt	1	1	AY.38	0.000499
ORF7a	82	V82del	GTT	---	1	1	AY.38	0.000499
ORF7a	82	V82I	Gtt	Att	1	1	AY.39	0.000025
ORF7a	82	V82G	gTt	gGt	1	1	AY.39.1	0.00004
ORF7a	82	V82del1	Gtt	-tt	1	1	AY.39.1	0.00004
ORF7a	82	V82S	GTt	TCt	1	1	AY.39.1	0.00004
ORF7a	82	V82I	Gtt	Att	1	1	AY.4	0.000002
ORF7a	82	V82del	GTT	---	1	1	AY.4.1	0.000737
ORF7a	82	V82T	GTt	ACt	1	1	AY.4.2	0.000022
ORF7a	82	V82del2	GTt	--t	1	1	AY.4.2	0.000022
ORF7a	82	V82del	GTT	---	1	1	AY.4.2.1	0.000149
ORF7a	82	V82del	GTT	---	1	1	AY.4.4	0.000409
ORF7a	82	V82T	GTt	ACt	1	1	AY.4.5	0.000107
ORF7a	82	V82S	GTt	TCt	1	1	AY.42	0.00004
ORF7a	82	V82P	GTt	CCt	1	1	AY.43	0.000004
ORF7a	82	V82D	gTt	gAt	1	1	AY.43	0.000004
ORF7a	82	V82X	GTT	TAA	1	1	AY.43	0.000004
ORF7a	82	V82F	Gtt	Ttt	1	1	AY.43	0.000004
ORF7a	82	V82F	Gtt	Ttt	1	1	AY.44	0.000006
ORF7a	82	V82V	gtT	gtA	1	1	AY.44	0.000006
ORF7a	82	V82M	GtT	AtG	1	1	AY.44	0.000006
ORF7a	82	V82P	GTt	CCt	1	1	AY.46	0.000104
ORF7a	82	V82T	GTt	ACt	1	1	AY.46.2	0.000635
ORF7a	82	V82T	GTt	ACt	1	1	AY.46.4	0.000165
ORF7a	82	V82del	GTT	---	1	1	AY.46.5	0.000198
ORF7a	82	V82del	GTT	---	1	1	AY.48	0.000465
ORF7a	82	V82del1	Gtt	-tt	1	1	AY.48	0.000465
ORF7a	82	V82del1	Gtt	-tt	1	1	AY.5	0.000021
ORF7a	82	V82del1	gTt	g-t	1	1	AY.50	0.000799
ORF7a	82	V82del	GTT	---	1	1	AY.52	0.000814
ORF7a	82	V82I	Gtt	Att	1	1	AY.54	0.000095
ORF7a	82	V82S	GTt	TCt	1	1	AY.54	0.000095
ORF7a	82	V82del1	Gtt	-tt	1	1	AY.54	0.000095
ORF7a	82	V82T	GTt	ACt	1	1	AY.55	0.000917
ORF7a	82	V82del	GTT	---	1	1	AY.59	0.00053
ORF7a	82	V82V	gtT	gtA	1	1	AY.59	0.00053
ORF7a	82	V82del2	GTt	--t	1	1	AY.6	0.000041
ORF7a	82	V82D	gTt	gAt	1	1	AY.61	0.000105
ORF7a	82	V82del1	Gtt	-tt	1	1	AY.61	0.000105
ORF7a	82	V82del	GTT	---	1	1	AY.62	0.000436
ORF7a	82	V82del	GTT	---	1	1	AY.66	0.00107
ORF7a	82	V82I	Gtt	Att	1	1	AY.67	0.000464
ORF7a	82	V82del	GTT	---	1	1	AY.69	0.000187
ORF7a	82	V82P	GTt	CCt	1	1	AY.7	0.000196
ORF7a	82	V82V	gtT	gtG	1	1	AY.7.1	0.000113
ORF7a	82	V82S	GTt	TCt	1	1	AY.7.1	0.000113
ORF7a	82	V82V	gtT	gtC	1	1	AY.7.2	0.000559
ORF7a	82	V82del1	Gtt	-tt	1	1	AY.7.2	0.000559
ORF7a	82	V82del	GTT	---	1	1	AY.70	0.000209
ORF7a	82	V82T	GTt	ACt	1	1	AY.70	0.000209
ORF7a	82	V82del2	GTt	--t	1	1	AY.71	0.000475
ORF7a	82	V82del	GTT	---	1	1	AY.73	0.000665
ORF7a	82	V82I	Gtt	Att	1	1	AY.74	0.000116
ORF7a	82	V82del	GTT	---	1	1	AY.74	0.000116
ORF7a	82	V82del2	GTt	--t	1	1	AY.75	0.000056
ORF7a	82	V82del	GTT	---	1	1	AY.84	0.000437
ORF7a	82	V82del2	gTT	g--	1	1	AY.85	0.000427
ORF7a	82	V82V	gtT	gtC	1	1	AY.85	0.000427
ORF7a	82	V82T	GTt	ACt	1	1	AY.9.2	0.000037
ORF7a	82	V82S	GTt	TCt	1	1	AY.91	0.00073
ORF7a	82	V82S	GTt	TCt	1	1	AY.94	0.000443
ORF7a	82	V82del	GTT	---	1	1	AY.95	0.000761
ORF7a	82	V82G	gTt	gGt	1	1	AY.99	0.001049
ORF7a	82	V82del	GTT	---	1	1	AZ.2	0.000821
ORF7a	82	V82C	GTt	TGt	1	1	B.1	0.000009
ORF7a	82	V82S	GTt	AGt	1	1	B.1	0.000009
ORF7a	82	V82del2	GTt	--t	1	1	B.1	0.000009
ORF7a	82	V82del1	GtT	-tN	1	1	B.1	0.000009
ORF7a	82	V82P	GTt	CCt	1	1	B.1	0.000009
ORF7a	82	V82G	gTt	gGt	1	1	B.1	0.000009
ORF7a	82	V82D	gTt	gAt	1	1	B.1.1	0.000018
ORF7a	82	V82V	gtT	gtG	1	1	B.1.1	0.000018
ORF7a	82	V82del	GTT	---	1	1	B.1.1.1	0.000327
ORF7a	82	V82A	gTt	gCt	1	1	B.1.1.121	0.002427
ORF7a	82	V82I	Gtt	Att	1	1	B.1.1.141	0.002012
ORF7a	82	V82del	GTT	---	1	1	B.1.1.174	0.003378
ORF7a	82	V82I	Gtt	Att	1	1	B.1.1.189	0.001513
ORF7a	82	V82del	GTT	---	1	1	B.1.1.192	0.002309
ORF7a	82	V82del	GTT	---	1	1	B.1.1.194	0.00495
ORF7a	82	V82del	GTT	---	1	1	B.1.1.205	0.003717
ORF7a	82	V82del	GTT	---	1	1	B.1.1.207	0.001182
ORF7a	82	V82del1	Gtt	-tt	1	1	B.1.1.214	0.000055
ORF7a	82	V82V	gtT	gtC	1	1	B.1.1.216	0.00089
ORF7a	82	V82F	Gtt	Ttt	1	1	B.1.1.222	0.000204
ORF7a	82	V82V	gtT	gtC	1	1	B.1.1.265	0.003155
ORF7a	82	V82del2	GTt	--t	1	1	B.1.1.265	0.003155
ORF7a	82	V82del	GTT	---	1	1	B.1.1.277	0.000759
ORF7a	82	V82A	gTt	gCt	1	1	B.1.1.28	0.000311
ORF7a	82	V82F	Gtt	Ttt	1	1	B.1.1.28	0.000311
ORF7a	82	V82V	gtT	gtC	1	1	B.1.1.280	0.003086
ORF7a	82	V82I	Gtt	Att	1	1	B.1.1.282	0.011628
ORF7a	82	V82del1	Gtt	-tt	1	1	B.1.1.284	0.000107
ORF7a	82	V82V	gtT	gtC	1	1	B.1.1.294	0.001266
ORF7a	82	V82del	GTT	---	1	1	B.1.1.303	0.002762
ORF7a	82	V82I	Gtt	Att	1	1	B.1.1.305	0.003861
ORF7a	82	V82A	gTt	gCt	1	1	B.1.1.306	0.000438
ORF7a	82	V82del	GTT	---	1	1	B.1.1.318	0.000302
ORF7a	82	V82F	Gtt	Ttt	1	1	B.1.1.326	0.001761
ORF7a	82	V82del	GTT	---	1	1	B.1.1.33	0.000421
ORF7a	82	V82I	Gtt	Att	1	1	B.1.1.33	0.000421
ORF7a	82	V82F	Gtt	Ttt	1	1	B.1.1.348	0.000796
ORF7a	82	V82A	gTt	gCt	1	1	B.1.1.348	0.000796
ORF7a	82	V82F	Gtt	Ttt	1	1	B.1.1.354	0.004386
ORF7a	82	V82I	Gtt	Att	1	1	B.1.1.363	0.005988
ORF7a	82	V82del	GTT	---	1	1	B.1.1.366	0.015873
ORF7a	82	V82V	gtT	gtC	1	1	B.1.1.377	0.001381
ORF7a	82	V82I	Gtt	Att	1	1	B.1.1.385	0.004464
ORF7a	82	V82G	gTt	gGt	1	1	B.1.1.398	0.003226
ORF7a	82	V82V	gtT	gtC	1	1	B.1.1.434	0.000349
ORF7a	82	V82del	GTT	---	1	1	B.1.1.437	0.010417
ORF7a	82	V82del	GTT	---	1	1	B.1.1.448	0.002033
ORF7a	82	V82del2	GTt	--t	1	1	B.1.1.519	0.00004
ORF7a	82	V82A	gTt	gCt	1	1	B.1.1.519	0.00004
ORF7a	82	V82A	gTt	gCt	1	1	B.1.1.526	0.003546
ORF7a	82	V82K	GTT	AAA	1	1	B.1.1.7	0.000001
ORF7a	82	V82T	GTT	ACA	1	1	B.1.1.7	0.000001
ORF7a	82	V82V	gtT	gtG	1	1	B.1.110	0.004525
ORF7a	82	V82del	GTT	---	1	1	B.1.115	0.021739
ORF7a	82	V82A	gTt	gCt	1	1	B.1.131	0.008772
ORF7a	82	V82A	gTt	gCt	1	1	B.1.142	0.002899
ORF7a	82	V82del1	gtT	gt-	1	1	B.1.160	0.000031
ORF7a	82	V82A	gTt	gCt	1	1	B.1.160.15	0.00495
ORF7a	82	V82del	GTT	---	1	1	B.1.160.16	0.000929
ORF7a	82	V82V	gtT	gtA	1	1	B.1.160.22	0.006757
ORF7a	82	V82del	GTT	---	1	1	B.1.160.30	0.002976
ORF7a	82	V82del1	gTt	g-t	1	1	B.1.177	0.000013
ORF7a	82	V82del1	gtT	gt-	1	1	B.1.177.15	0.000631
ORF7a	82	V82N	GTt	AAt	1	1	B.1.177.21	0.000076
ORF7a	82	V82F	Gtt	Ttt	1	1	B.1.177.21	0.000076
ORF7a	82	V82del	GTT	---	1	1	B.1.177.31	0.011494
ORF7a	82	V82I	Gtt	Att	1	1	B.1.177.32	0.00135
ORF7a	82	V82F	Gtt	Ttt	1	1	B.1.177.4	0.000211
ORF7a	82	V82del	GTT	---	1	1	B.1.177.50	0.004695
ORF7a	82	V82del	GTT	---	1	1	B.1.177.57	0.000281
ORF7a	82	V82V	gtT	gtC	1	1	B.1.177.6	0.000977
ORF7a	82	V82del2	GTT	--N	1	1	B.1.177.6	0.000977
ORF7a	82	V82del	GTT	---	1	1	B.1.177.62	0.001192
ORF7a	82	V82T	GTt	ACt	1	1	B.1.177.63	0.002703
ORF7a	82	V82A	gTt	gCt	1	1	B.1.177.7	0.000165
ORF7a	82	V82L	Gtt	Ctt	1	1	B.1.2	0.000009
ORF7a	82	V82I	Gtt	Att	1	1	B.1.2	0.000009
ORF7a	82	V82del2	GTT	--N	1	1	B.1.2	0.000009
ORF7a	82	V82G	gTt	gGt	1	1	B.1.2	0.000009
ORF7a	82	V82del1	gTt	g-t	1	1	B.1.214	0.003663
ORF7a	82	V82A	gTt	gCt	1	1	B.1.218	0.005155
ORF7a	82	V82A	gTt	gCt	1	1	B.1.221	0.000071
ORF7a	82	V82del	GTT	---	1	1	B.1.221.1	0.002907
ORF7a	82	V82V	gtT	gtC	1	1	B.1.234	0.000132
ORF7a	82	V82del1	Gtt	-tt	1	1	B.1.234	0.000132
ORF7a	82	V82del	GTT	---	1	1	B.1.240	0.000216
ORF7a	82	V82del2	GTt	--t	1	1	B.1.240	0.000216
ORF7a	82	V82I	Gtt	Att	1	1	B.1.242	0.018868
ORF7a	82	V82F	Gtt	Ttt	1	1	B.1.243	0.00007
ORF7a	82	V82del1	gtT	gt-	1	1	B.1.243	0.00007
ORF7a	82	V82A	gTt	gCt	1	1	B.1.243.2	0.014493
ORF7a	82	V82del1	gTt	g-t	1	1	B.1.247	0.014925
ORF7a	82	V82del	GTT	---	1	1	B.1.252	0.006623
ORF7a	82	V82A	gTt	gCt	1	1	B.1.258	0.000067
ORF7a	82	V82L	Gtt	Ctt	1	1	B.1.258	0.000067
ORF7a	82	V82del	GTT	---	1	1	B.1.258	0.000067
ORF7a	82	V82del	GTT	---	1	1	B.1.258.17	0.000104
ORF7a	82	V82del	GTT	---	1	1	B.1.265	0.001271
ORF7a	82	V82F	Gtt	Ttt	1	1	B.1.301	0.005917
ORF7a	82	V82A	gTt	gCt	1	1	B.1.301	0.005917
ORF7a	82	V82I	Gtt	Att	1	1	B.1.311	0.000275
ORF7a	82	V82del	GTT	---	1	1	B.1.319	0.003049
ORF7a	82	V82A	gTt	gCt	1	1	B.1.349	0.000715
ORF7a	82	V82del	GTT	---	1	1	B.1.351.3	0.000876
ORF7a	82	V82I	Gtt	Att	1	1	B.1.36	0.000146
ORF7a	82	V82del1	gTt	g-t	1	1	B.1.36	0.000146
ORF7a	82	V82A	gTt	gCt	1	1	B.1.36	0.000146
ORF7a	82	V82del1	gtT	gt-	1	1	B.1.36.31	0.001751
ORF7a	82	V82A	gTt	gCt	1	1	B.1.36.31	0.001751
ORF7a	82	V82A	gTt	gCt	1	1	B.1.362	0.001541
ORF7a	82	V82del	GTT	---	1	1	B.1.371	0.001122
ORF7a	82	V82N	GTt	AAt	1	1	B.1.398	0.002976
ORF7a	82	V82A	gTt	gCt	1	1	B.1.400	0.000429
ORF7a	82	V82del	GTT	---	1	1	B.1.406	0.006061
ORF7a	82	V82I	Gtt	Att	1	1	B.1.416	0.001269
ORF7a	82	V82F	Gtt	Ttt	1	1	B.1.420	0.010417
ORF7a	82	V82I	Gtt	Att	1	1	B.1.427	0.00005
ORF7a	82	V82del1	gtT	gt-	1	1	B.1.427	0.00005
ORF7a	82	V82L	Gtt	Ctt	1	1	B.1.429	0.000024
ORF7a	82	V82A	gTt	gCt	1	1	B.1.433	0.003195
ORF7a	82	V82I	Gtt	Att	1	1	B.1.438	0.006536
ORF7a	82	V82A	gTt	gCt	1	1	B.1.438.1	0.000107
ORF7a	82	V82del	GTT	---	1	1	B.1.459	0.004082
ORF7a	82	V82A	gTt	gCt	1	1	B.1.459	0.004082
ORF7a	82	V82del	GTT	---	1	1	B.1.466.2	0.000391
ORF7a	82	V82F	Gtt	Ttt	1	1	B.1.467	0.04
ORF7a	82	V82del	GTT	---	1	1	B.1.468	0.005714
ORF7a	82	V82del	GTT	---	1	1	B.1.470	0.001404
ORF7a	82	V82A	gTt	gCt	1	1	B.1.474	0.001901
ORF7a	82	V82E	gTT	gAG	1	1	B.1.497	0.000315
ORF7a	82	V82D	gTT	gAC	1	1	B.1.497	0.000315
ORF7a	82	V82A	gTt	gCt	1	1	B.1.524	0.001406
ORF7a	82	V82I	Gtt	Att	1	1	B.1.525	0.000113
ORF7a	82	V82A	gTt	gCt	1	1	B.1.525	0.000113
ORF7a	82	V82F	Gtt	Ttt	1	1	B.1.525	0.000113
ORF7a	82	V82A	gTt	gCt	1	1	B.1.526	0.000024
ORF7a	82	V82S	GTt	AGt	1	1	B.1.526	0.000024
ORF7a	82	V82I	Gtt	Att	1	1	B.1.526	0.000024
ORF7a	82	V82del1	gtT	gt-	1	1	B.1.526	0.000024
ORF7a	82	V82del	GTT	---	1	1	B.1.527	0.003704
ORF7a	82	V82del	GTT	---	1	1	B.1.535	0.028571
ORF7a	82	V82F	Gtt	Ttt	1	1	B.1.551	0.00129
ORF7a	82	V82F	Gtt	Ttt	1	1	B.1.561	0.000397
ORF7a	82	V82A	gTt	gCt	1	1	B.1.564	0.000426
ORF7a	82	V82del	GTT	---	1	1	B.1.564.1	0.001577
ORF7a	82	V82del1	GTT	-NN	1	1	B.1.568	0.001111
ORF7a	82	V82A	gTt	gCt	1	1	B.1.574	0.002151
ORF7a	82	V82del	GTT	---	1	1	B.1.576	0.000907
ORF7a	82	V82del	GTT	---	1	1	B.1.577	0.000687
ORF7a	82	V82V	gtT	gtC	1	1	B.1.580	0.004065
ORF7a	82	V82del	GTT	---	1	1	B.1.582	0.000491
ORF7a	82	V82A	gTt	gCt	1	1	B.1.582	0.000491
ORF7a	82	V82del	GTT	---	1	1	B.1.602	0.006536
ORF7a	82	V82A	gTt	gCt	1	1	B.1.609	0.000479
ORF7a	82	V82del	GTT	---	1	1	B.1.617.1	0.000129
ORF7a	82	V82D	gTt	gAt	1	1	B.1.617.1	0.000129
ORF7a	82	V82R	GTT	CGA	1	1	B.1.617.2	0.000004
ORF7a	82	V82W	GTT	TGG	1	1	B.1.617.2	0.000004
ORF7a	82	V82del1	gTt	g-t	1	1	B.1.617.3	0.002985
ORF7a	82	V82V	gtT	gtG	1	1	B.1.619	0.000871
ORF7a	82	V82D	gTt	gAt	1	1	B.1.619	0.000871
ORF7a	82	V82I	Gtt	Att	1	1	B.1.620	0.000946
ORF7a	82	V82del	GTT	---	1	1	B.1.620	0.000946
ORF7a	82	V82I	Gtt	Att	1	1	B.1.621	0.000089
ORF7a	82	V82L	Gtt	Ctt	1	1	B.1.621	0.000089
ORF7a	82	V82I	Gtt	Att	1	1	B.1.621.1	0.000506
ORF7a	82	V82del	GTT	---	1	1	B.1.621.1	0.000506
ORF7a	82	V82F	Gtt	Ttt	1	1	B.1.625	0.002353
ORF7a	82	V82del	GTT	---	1	1	B.1.628	0.000352
ORF7a	82	V82I	Gtt	Att	1	1	B.1.628	0.000352
ORF7a	82	V82V	gtT	gtG	1	1	B.1.637	0.000073
ORF7a	82	V82del	GTT	---	1	1	B.1.638	0.052632
ORF7a	82	V82A	gTt	gCt	1	1	B.1.83	0.015385
ORF7a	82	V82del	GTT	---	1	1	B.1.88.1	0.004808
ORF7a	82	V82del	GTT	---	1	1	B.1.9.1	0.032258
ORF7a	82	V82del	GTT	---	1	1	B.1.93	0.000934
ORF7a	82	V82F	Gtt	Ttt	1	1	B.29	0.003509
ORF7a	82	V82G	gTt	gGt	1	1	B.40	0.000364
ORF7a	82	V82D	gTt	gAt	1	1	B.40	0.000364
ORF7a	82	V82A	gTt	gCt	1	1	B.55	0.00295
ORF7a	82	V82A	gTt	gCt	1	1	C.36.3	0.000567
ORF7a	82	V82del	GTT	---	1	1	C.36.3	0.000567
ORF7a	82	V82F	Gtt	Ttt	1	1	C.37	0.000116
ORF7a	82	V82A	gTt	gCt	1	1	C.37.1	0.002618
ORF7a	82	V82F	Gtt	Ttt	1	1	C.40	0.027778
ORF7a	82	V82del	GTT	---	1	1	D.2	0.000075
ORF7a	82	V82V	gtT	gtC	1	1	D.2	0.000075
ORF7a	82	V82del	GTT	---	1	1	N.5	0.001767
ORF7a	82	V82del2	GTt	--t	1	1	P.1	0.000016
ORF7a	82	V82G	gTt	gGt	1	1	P.1	0.000016
ORF7a	82	V82del1	gTt	g-t	1	1	P.1	0.000016
ORF7a	82	V82V	gtT	gtC	1	1	P.1	0.000016
ORF7a	82	V82I	Gtt	Att	1	1	P.1	0.000016
ORF7a	82	V82A	gTt	gCt	1	1	P.1.1	0.000318
ORF7a	82	V82del	GTT	---	1	1	P.1.1	0.000318
ORF7a	82	V82V	gtT	gtC	1	1	P.1.1	0.000318
ORF7a	82	V82del	GTT	---	1	1	P.1.13	0.000898
ORF7a	82	V82V	gtT	gtG	1	1	P.1.14	0.000048
ORF7a	82	V82V	gtT	gtC	1	1	P.1.15	0.000232
ORF7a	82	V82del	GTT	---	1	1	P.1.16	0.000374
ORF7a	82	V82V	gtT	gtA	1	1	P.1.17.1	0.000875
ORF7a	82	V82del	GTT	---	1	1	P.1.3	0.034483
ORF7a	82	V82del	GTT	---	1	1	P.1.4	0.000977
ORF7a	82	V82A	gTt	gCt	1	1	P.1.8	0.004785
ORF7a	82	V82F	Gtt	Ttt	1	1	P.1.8	0.004785
ORF7a	82	V82del	GTT	---	1	1	P.2	0.000187
ORF7a	82	V82V	gtT	gtC	1	1	P.2	0.000187
ORF7a	82	V82A	gTt	gCt	1	1	P.3	0.001595
ORF7a	82	V82A	gTt	gCt	1	1	P.5	0.013699
ORF7a	82	V82A	gTt	gCt	1	1	Q.1	0.000126
ORF7a	82	V82A	gTt	gCt	1	1	Q.3	0.000145
ORF7a	82	V82del	GTT	---	1	1	Q.7	0.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.