CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 81 | S81del | del | TCA | --- | 6820 | 6820 | 1 | 27634-27636 | |
ORF7a | 81 | S81L | nonsyn | tCa | tTa | 4385 | 4383 | 0.999544 | 27634-27636 | |
ORF7a | 81 | S81L | nonsyn | tCA | tTG | 4385 | 2 | 0.0004561 | 27634-27636 | |
ORF7a | 81 | S81P | nonsyn | Tca | Cca | 1579 | 1577 | 0.998733 | 27634-27636 | |
ORF7a | 81 | S81P | nonsyn | TcA | CcT | 1579 | 2 | 0.00126662 | 27634-27636 | |
ORF7a | 81 | S81S | syn | tcA | tcG | 347 | 191 | 0.550432 | 27634-27636 | |
ORF7a | 81 | S81S | syn | tcA | tcT | 347 | 136 | 0.391931 | 27634-27636 | |
ORF7a | 81 | S81S | syn | tcA | tcC | 347 | 20 | 0.0576369 | 27634-27636 | |
ORF7a | 81 | S81del1 | del | Tca | -ca | 139 | 93 | 0.669065 | 27634-27636 | |
ORF7a | 81 | S81del1 | del | tcA | tc- | 139 | 42 | 0.302158 | 27634-27636 | |
ORF7a | 81 | S81del1 | del | TCA | -NN | 139 | 4 | 0.028777 | 27634-27636 | |
ORF7a | 81 | S81T | nonsyn | Tca | Aca | 135 | 133 | 0.985185 | 27634-27636 | |
ORF7a | 81 | S81T | nonsyn | TcA | AcC | 135 | 1 | 0.00740741 | 27634-27636 | |
ORF7a | 81 | S81T | nonsyn | TcA | AcT | 135 | 1 | 0.00740741 | 27634-27636 | |
ORF7a | 81 | S81A | nonsyn | Tca | Gca | 126 | 125 | 0.992063 | 27634-27636 | |
ORF7a | 81 | S81A | nonsyn | TcA | GcT | 126 | 1 | 0.00793651 | 27634-27636 | |
ORF7a | 81 | S81X | nonsyn | tCa | tAa | 87 | 56 | 0.643678 | 27634-27636 | |
ORF7a | 81 | S81X | nonsyn | tCa | tGa | 87 | 29 | 0.333333 | 27634-27636 | |
ORF7a | 81 | S81X | nonsyn | tCA | tAG | 87 | 2 | 0.0229885 | 27634-27636 | |
ORF7a | 81 | S81del2 | del | TCa | --a | 44 | 31 | 0.704545 | 27634-27636 | |
ORF7a | 81 | S81del2 | del | TCA | --N | 44 | 8 | 0.181818 | 27634-27636 | |
ORF7a | 81 | S81del2 | del | tCA | t-- | 44 | 5 | 0.113636 | 27634-27636 | |
ORF7a | 81 | S81G | nonsyn | TCa | GGa | 29 | 28 | 0.965517 | 27634-27636 | |
ORF7a | 81 | S81G | nonsyn | TCA | GGG | 29 | 1 | 0.0344828 | 27634-27636 | |
ORF7a | 81 | S81K | nonsyn | TCa | AAa | 8 | 8 | 1 | 27634-27636 | |
ORF7a | 81 | S81R | nonsyn | TCa | AGa | 7 | 7 | 1 | 27634-27636 | |
ORF7a | 81 | S81I | nonsyn | TCa | ATa | 5 | 4 | 0.8 | 27634-27636 | |
ORF7a | 81 | S81I | nonsyn | TCA | ATC | 5 | 1 | 0.2 | 27634-27636 | |
ORF7a | 81 | S81Q | nonsyn | TCa | CAa | 3 | 3 | 1 | 27634-27636 | |
ORF7a | 81 | S81M | nonsyn | TCA | ATG | 2 | 2 | 1 | 27634-27636 | |
ORF7a | 81 | S81C | nonsyn | tCA | tGC | 2 | 2 | 1 | 27634-27636 | |
ORF7a | 81 | S81W | nonsyn | tCA | tGG | 2 | 2 | 1 | 27634-27636 | |
ORF7a | 81 | S81F | nonsyn | tCA | tTC | 1 | 1 | 1 | 27634-27636 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 81 | S81del | TCA | --- | 6820 | 6820 | All | 0.001304 |
ORF7a | 81 | S81L | tCa | tTa | 4383 | 4385 | All | 0.000838 |
ORF7a | 81 | S81L | tCA | tTG | 2 | 4385 | All | 0 |
ORF7a | 81 | S81del | TCA | --- | 2036 | 2036 | AY.4 | 0.003169 |
ORF7a | 81 | S81P | Tca | Cca | 1577 | 1579 | All | 0.000302 |
ORF7a | 81 | S81P | TcA | CcT | 2 | 1579 | All | 0 |
ORF7a | 81 | S81del | TCA | --- | 1187 | 1187 | B.1.1.7 | 0.001063 |
ORF7a | 81 | S81L | tCa | tTa | 1179 | 1179 | B.1.1.7 | 0.001055 |
ORF7a | 81 | S81L | tCa | tTa | 1071 | 1071 | AY.4 | 0.001667 |
ORF7a | 81 | S81del | TCA | --- | 407 | 407 | AY.4.2 | 0.008827 |
ORF7a | 81 | S81L | tCa | tTa | 395 | 395 | A | 0.152864 |
ORF7a | 81 | S81S | tcA | tcG | 191 | 347 | All | 0.000037 |
ORF7a | 81 | S81S | tcA | tcT | 136 | 347 | All | 0.000026 |
ORF7a | 81 | S81S | tcA | tcC | 20 | 347 | All | 0.000004 |
ORF7a | 81 | S81P | Tca | Cca | 345 | 345 | Q.7 | 0.383333 |
ORF7a | 81 | S81L | tCa | tTa | 296 | 296 | B.1.617.2 | 0.001115 |
ORF7a | 81 | S81P | Tca | Cca | 250 | 250 | AY.4 | 0.000389 |
ORF7a | 81 | S81P | Tca | Cca | 246 | 246 | B.1.523 | 0.602941 |
ORF7a | 81 | S81del | TCA | --- | 229 | 229 | B.1.617.2 | 0.000862 |
ORF7a | 81 | S81del | TCA | --- | 216 | 216 | AY.103 | 0.001341 |
ORF7a | 81 | S81del | TCA | --- | 179 | 179 | AY.39 | 0.004423 |
ORF7a | 81 | S81del | TCA | --- | 179 | 179 | B.1.177.21 | 0.013688 |
ORF7a | 81 | S81L | tCa | tTa | 156 | 156 | AY.3 | 0.001552 |
ORF7a | 81 | S81del | TCA | --- | 155 | 155 | AY.43 | 0.000687 |
ORF7a | 81 | S81P | Tca | Cca | 155 | 155 | B.1.1.7 | 0.000139 |
ORF7a | 81 | S81del | TCA | --- | 146 | 146 | AY.44 | 0.000889 |
ORF7a | 81 | S81del1 | Tca | -ca | 93 | 139 | All | 0.000018 |
ORF7a | 81 | S81del1 | tcA | tc- | 42 | 139 | All | 0.000008 |
ORF7a | 81 | S81del1 | TCA | -NN | 4 | 139 | All | 0.000001 |
ORF7a | 81 | S81T | Tca | Aca | 133 | 135 | All | 0.000025 |
ORF7a | 81 | S81T | TcA | AcT | 1 | 135 | All | 0 |
ORF7a | 81 | S81T | TcA | AcC | 1 | 135 | All | 0 |
ORF7a | 81 | S81A | Tca | Gca | 125 | 126 | All | 0.000024 |
ORF7a | 81 | S81A | TcA | GcT | 1 | 126 | All | 0 |
ORF7a | 81 | S81del | TCA | --- | 114 | 114 | AY.100 | 0.005245 |
ORF7a | 81 | S81del | TCA | --- | 113 | 113 | AY.29 | 0.001782 |
ORF7a | 81 | S81del | TCA | --- | 113 | 113 | AY.3 | 0.001124 |
ORF7a | 81 | S81del | TCA | --- | 94 | 94 | AY.26 | 0.002661 |
ORF7a | 81 | S81L | tCa | tTa | 93 | 93 | AY.44 | 0.000566 |
ORF7a | 81 | S81L | tCa | tTa | 93 | 93 | AY.87 | 0.077435 |
ORF7a | 81 | S81P | Tca | Cca | 90 | 90 | AY.3 | 0.000895 |
ORF7a | 81 | S81X | tCa | tAa | 56 | 87 | All | 0.000011 |
ORF7a | 81 | S81X | tCa | tGa | 29 | 87 | All | 0.000006 |
ORF7a | 81 | S81X | tCA | tAG | 2 | 87 | All | 0 |
ORF7a | 81 | S81del | TCA | --- | 84 | 84 | AY.25 | 0.000505 |
ORF7a | 81 | S81L | tCa | tTa | 80 | 80 | AY.43 | 0.000354 |
ORF7a | 81 | S81del | TCA | --- | 76 | 76 | AY.42 | 0.003057 |
ORF7a | 81 | S81L | tCa | tTa | 75 | 75 | AY.103 | 0.000466 |
ORF7a | 81 | S81del | TCA | --- | 73 | 73 | AY.98 | 0.005767 |
ORF7a | 81 | S81del1 | Tca | -ca | 59 | 69 | AY.4 | 0.000092 |
ORF7a | 81 | S81del1 | tcA | tc- | 9 | 69 | AY.4 | 0.000014 |
ORF7a | 81 | S81del1 | TCA | -NN | 1 | 69 | AY.4 | 0.000002 |
ORF7a | 81 | S81S | tcA | tcT | 31 | 59 | AY.4 | 0.000048 |
ORF7a | 81 | S81S | tcA | tcG | 26 | 59 | AY.4 | 0.00004 |
ORF7a | 81 | S81S | tcA | tcC | 2 | 59 | AY.4 | 0.000003 |
ORF7a | 81 | S81del | TCA | --- | 58 | 58 | AY.120 | 0.002156 |
ORF7a | 81 | S81L | tCa | tTa | 58 | 58 | AY.25 | 0.000349 |
ORF7a | 81 | S81P | Tca | Cca | 54 | 55 | AY.44 | 0.000329 |
ORF7a | 81 | S81P | TcA | CcT | 1 | 55 | AY.44 | 0.000006 |
ORF7a | 81 | S81del | TCA | --- | 55 | 55 | B.1.177 | 0.000724 |
ORF7a | 81 | S81del | TCA | --- | 55 | 55 | B.1.2 | 0.000484 |
ORF7a | 81 | S81del | TCA | --- | 54 | 54 | B.1.526 | 0.001269 |
ORF7a | 81 | S81P | Tca | Cca | 51 | 51 | B.1.617.2 | 0.000192 |
ORF7a | 81 | S81del2 | TCa | --a | 31 | 44 | All | 0.000006 |
ORF7a | 81 | S81del2 | TCA | --N | 8 | 44 | All | 0.000002 |
ORF7a | 81 | S81del2 | tCA | t-- | 5 | 44 | All | 0.000001 |
ORF7a | 81 | S81del | TCA | --- | 44 | 44 | B.1.621 | 0.003895 |
ORF7a | 81 | S81del | TCA | --- | 41 | 41 | B.1.1.284 | 0.004403 |
ORF7a | 81 | S81L | tCa | tTa | 39 | 39 | AY.20 | 0.001516 |
ORF7a | 81 | S81del | TCA | --- | 38 | 38 | B.1 | 0.000348 |
ORF7a | 81 | S81P | Tca | Cca | 37 | 37 | AY.120 | 0.001376 |
ORF7a | 81 | S81L | tCa | tTa | 35 | 37 | B.1.177 | 0.000461 |
ORF7a | 81 | S81L | tCA | tTG | 2 | 37 | B.1.177 | 0.000026 |
ORF7a | 81 | S81S | tcA | tcG | 36 | 36 | AY.25 | 0.000217 |
ORF7a | 81 | S81S | tcA | tcG | 21 | 35 | B.1.617.2 | 0.000079 |
ORF7a | 81 | S81S | tcA | tcT | 9 | 35 | B.1.617.2 | 0.000034 |
ORF7a | 81 | S81S | tcA | tcC | 5 | 35 | B.1.617.2 | 0.000019 |
ORF7a | 81 | S81del | TCA | --- | 35 | 35 | P.1 | 0.000551 |
ORF7a | 81 | S81S | tcA | tcG | 34 | 34 | AY.108 | 0.037486 |
ORF7a | 81 | S81del | TCA | --- | 34 | 34 | AY.3.1 | 0.002899 |
ORF7a | 81 | S81L | tCa | tTa | 32 | 32 | AY.34 | 0.003103 |
ORF7a | 81 | S81del | TCA | --- | 32 | 32 | AY.46.6 | 0.002311 |
ORF7a | 81 | S81P | Tca | Cca | 31 | 31 | AY.119 | 0.001095 |
ORF7a | 81 | S81L | tCa | tTa | 31 | 31 | B.1 | 0.000284 |
ORF7a | 81 | S81L | tCa | tTa | 31 | 31 | B.1.2 | 0.000273 |
ORF7a | 81 | S81L | tCa | tTa | 31 | 31 | R.1 | 0.00279 |
ORF7a | 81 | S81del | TCA | --- | 30 | 30 | AY.119 | 0.001059 |
ORF7a | 81 | S81G | TCa | GGa | 28 | 29 | All | 0.000005 |
ORF7a | 81 | S81G | TCA | GGG | 1 | 29 | All | 0 |
ORF7a | 81 | S81del | TCA | --- | 28 | 28 | AY.36 | 0.00415 |
ORF7a | 81 | S81L | tCa | tTa | 28 | 28 | B.1.234 | 0.003694 |
ORF7a | 81 | S81del | TCA | --- | 27 | 27 | AY.47 | 0.00084 |
ORF7a | 81 | S81L | tCa | tTa | 27 | 27 | P.1 | 0.000425 |
ORF7a | 81 | S81del | TCA | --- | 26 | 26 | AY.20 | 0.00101 |
ORF7a | 81 | S81del | TCA | --- | 26 | 26 | AY.7.2 | 0.014541 |
ORF7a | 81 | S81del | TCA | --- | 26 | 26 | B.1.1.214 | 0.001442 |
ORF7a | 81 | S81S | tcA | tcG | 16 | 26 | B.1.1.7 | 0.000014 |
ORF7a | 81 | S81S | tcA | tcT | 10 | 26 | B.1.1.7 | 0.000009 |
ORF7a | 81 | S81del | TCA | --- | 25 | 25 | AY.5 | 0.000516 |
ORF7a | 81 | S81T | Tca | Aca | 24 | 25 | B.1.1.7 | 0.000021 |
ORF7a | 81 | S81T | TcA | AcT | 1 | 25 | B.1.1.7 | 0.000001 |
ORF7a | 81 | S81S | tcA | tcT | 25 | 25 | B.1.177.51 | 0.114155 |
ORF7a | 81 | S81L | tCa | tTa | 25 | 25 | B.1.429 | 0.000588 |
ORF7a | 81 | S81P | Tca | Cca | 25 | 25 | B.1.621 | 0.002213 |
ORF7a | 81 | S81del | TCA | --- | 24 | 24 | AY.6 | 0.000987 |
ORF7a | 81 | S81G | TCa | GGa | 23 | 24 | B.1.177.21 | 0.001759 |
ORF7a | 81 | S81G | TCA | GGG | 1 | 24 | B.1.177.21 | 0.000076 |
ORF7a | 81 | S81P | Tca | Cca | 23 | 23 | B.1 | 0.000211 |
ORF7a | 81 | S81L | tCa | tTa | 23 | 23 | B.1.517 | 0.009821 |
ORF7a | 81 | S81del | TCA | --- | 22 | 22 | B.1.637 | 0.001608 |
ORF7a | 81 | S81A | Tca | Gca | 21 | 21 | B.1.1.7 | 0.000019 |
ORF7a | 81 | S81L | tCa | tTa | 20 | 20 | AY.23.1 | 0.008347 |
ORF7a | 81 | S81del | TCA | --- | 20 | 20 | B.1.351 | 0.000595 |
ORF7a | 81 | S81L | tCa | tTa | 20 | 20 | B.1.351 | 0.000595 |
ORF7a | 81 | S81del | TCA | --- | 19 | 19 | AY.46.4 | 0.003126 |
ORF7a | 81 | S81L | tCa | tTa | 19 | 19 | AY.5 | 0.000392 |
ORF7a | 81 | S81A | Tca | Gca | 19 | 19 | AY.85 | 0.008116 |
ORF7a | 81 | S81T | Tca | Aca | 19 | 19 | B.1.2 | 0.000167 |
ORF7a | 81 | S81del | TCA | --- | 18 | 18 | AY.75 | 0.001008 |
ORF7a | 81 | S81P | Tca | Cca | 18 | 18 | B.1.2 | 0.000158 |
ORF7a | 81 | S81A | Tca | Gca | 18 | 18 | B.1.617.2 | 0.000068 |
ORF7a | 81 | S81del | TCA | --- | 17 | 17 | B.1.160 | 0.00053 |
ORF7a | 81 | S81del | TCA | --- | 17 | 17 | B.1.429 | 0.0004 |
ORF7a | 81 | S81L | tCa | tTa | 16 | 16 | AY.33 | 0.001068 |
ORF7a | 81 | S81P | Tca | Cca | 15 | 15 | AY.25 | 0.00009 |
ORF7a | 81 | S81del | TCA | --- | 15 | 15 | AY.30 | 0.005936 |
ORF7a | 81 | S81T | Tca | Aca | 15 | 15 | AY.85 | 0.006408 |
ORF7a | 81 | S81del | TCA | --- | 15 | 15 | AY.98.1 | 0.000726 |
ORF7a | 81 | S81X | tCa | tAa | 8 | 15 | B.1.1.7 | 0.000007 |
ORF7a | 81 | S81X | tCa | tGa | 7 | 15 | B.1.1.7 | 0.000006 |
ORF7a | 81 | S81del | TCA | --- | 15 | 15 | B.1.525 | 0.001697 |
ORF7a | 81 | S81del | TCA | --- | 15 | 15 | C.37 | 0.001741 |
ORF7a | 81 | S81P | Tca | Cca | 15 | 15 | P.1 | 0.000236 |
ORF7a | 81 | S81del1 | tcA | tc- | 12 | 14 | AY.103 | 0.000075 |
ORF7a | 81 | S81del1 | Tca | -ca | 2 | 14 | AY.103 | 0.000012 |
ORF7a | 81 | S81del | TCA | --- | 14 | 14 | AY.117 | 0.001183 |
ORF7a | 81 | S81del1 | Tca | -ca | 13 | 14 | AY.120 | 0.000483 |
ORF7a | 81 | S81del1 | tcA | tc- | 1 | 14 | AY.120 | 0.000037 |
ORF7a | 81 | S81del | TCA | --- | 14 | 14 | B.1.1 | 0.000254 |
ORF7a | 81 | S81del | TCA | --- | 14 | 14 | B.1.1.258 | 0.045603 |
ORF7a | 81 | S81L | tCa | tTa | 14 | 14 | B.1.534 | 0.175 |
ORF7a | 81 | S81X | tCa | tGa | 11 | 13 | AY.44 | 0.000067 |
ORF7a | 81 | S81X | tCa | tAa | 2 | 13 | AY.44 | 0.000012 |
ORF7a | 81 | S81del | TCA | --- | 12 | 12 | AY.116 | 0.003441 |
ORF7a | 81 | S81del | TCA | --- | 12 | 12 | AY.23 | 0.000837 |
ORF7a | 81 | S81T | Tca | Aca | 12 | 12 | AY.3 | 0.000119 |
ORF7a | 81 | S81P | Tca | Cca | 12 | 12 | AY.34 | 0.001164 |
ORF7a | 81 | S81del | TCA | --- | 12 | 12 | AY.71 | 0.005701 |
ORF7a | 81 | S81del | TCA | --- | 12 | 12 | B.1.324 | 0.019262 |
ORF7a | 81 | S81L | tCa | tTa | 12 | 12 | B.1.427 | 0.000606 |
ORF7a | 81 | S81L | tCa | tTa | 12 | 12 | Q.8 | 0.001979 |
ORF7a | 81 | S81del | TCA | --- | 12 | 12 | R.1 | 0.00108 |
ORF7a | 81 | S81A | Tca | Gca | 11 | 11 | AY.102 | 0.000292 |
ORF7a | 81 | S81P | Tca | Cca | 11 | 11 | AY.103 | 0.000068 |
ORF7a | 81 | S81del | TCA | --- | 11 | 11 | AY.110 | 0.00124 |
ORF7a | 81 | S81del | TCA | --- | 11 | 11 | AY.121 | 0.001488 |
ORF7a | 81 | S81L | tCa | tTa | 11 | 11 | AY.13 | 0.001771 |
ORF7a | 81 | S81P | Tca | Cca | 11 | 11 | AY.23 | 0.000767 |
ORF7a | 81 | S81L | tCa | tTa | 11 | 11 | AY.29 | 0.000174 |
ORF7a | 81 | S81T | Tca | Aca | 11 | 11 | AY.44 | 0.000067 |
ORF7a | 81 | S81del | TCA | --- | 11 | 11 | AY.9 | 0.000744 |
ORF7a | 81 | S81L | tCa | tTa | 11 | 11 | B.1.1 | 0.0002 |
ORF7a | 81 | S81del2 | TCa | --a | 6 | 11 | B.1.1.7 | 0.000005 |
ORF7a | 81 | S81del2 | TCA | --N | 5 | 11 | B.1.1.7 | 0.000004 |
ORF7a | 81 | S81del | TCA | --- | 11 | 11 | B.1.596 | 0.000959 |
ORF7a | 81 | S81del | TCA | --- | 11 | 11 | N.7 | 0.323529 |
ORF7a | 81 | S81del | TCA | --- | 10 | 10 | AY.118 | 0.000626 |
ORF7a | 81 | S81del | TCA | --- | 10 | 10 | AY.39.1 | 0.000396 |
ORF7a | 81 | S81X | tCa | tAa | 10 | 10 | AY.4 | 0.000016 |
ORF7a | 81 | S81L | tCa | tTa | 10 | 10 | AY.4.2 | 0.000217 |
ORF7a | 81 | S81S | tcA | tcT | 7 | 10 | B.1.177 | 0.000092 |
ORF7a | 81 | S81S | tcA | tcC | 3 | 10 | B.1.177 | 0.00004 |
ORF7a | 81 | S81L | tCa | tTa | 10 | 10 | B.1.177.81 | 0.001893 |
ORF7a | 81 | S81L | tCa | tTa | 10 | 10 | B.1.243 | 0.000696 |
ORF7a | 81 | S81del | TCA | --- | 10 | 10 | B.1.427 | 0.000505 |
ORF7a | 81 | S81L | tCa | tTa | 10 | 10 | B.1.621 | 0.000885 |
ORF7a | 81 | S81del | TCA | --- | 10 | 10 | Q.8 | 0.001649 |
ORF7a | 81 | S81L | tCa | tTa | 9 | 9 | AY.100 | 0.000414 |
ORF7a | 81 | S81L | tCa | tTa | 9 | 9 | AY.102 | 0.000239 |
ORF7a | 81 | S81S | tcA | tcT | 9 | 9 | AY.4.2 | 0.000195 |
ORF7a | 81 | S81P | Tca | Cca | 9 | 9 | AY.4.2 | 0.000195 |
ORF7a | 81 | S81L | tCa | tTa | 9 | 9 | AY.4.5 | 0.000967 |
ORF7a | 81 | S81P | Tca | Cca | 9 | 9 | AY.43 | 0.00004 |
ORF7a | 81 | S81L | tCa | tTa | 9 | 9 | AY.69 | 0.00168 |
ORF7a | 81 | S81L | tCa | tTa | 9 | 9 | AY.98 | 0.000711 |
ORF7a | 81 | S81del | TCA | --- | 9 | 9 | AY.99.2 | 0.000829 |
ORF7a | 81 | S81del | TCA | --- | 9 | 9 | B.1.1.519 | 0.000357 |
ORF7a | 81 | S81L | tCa | tTa | 9 | 9 | B.1.160 | 0.000281 |
ORF7a | 81 | S81L | tCa | tTa | 9 | 9 | B.1.160.8 | 0.011598 |
ORF7a | 81 | S81X | tCa | tAa | 9 | 9 | B.1.177 | 0.000119 |
ORF7a | 81 | S81P | Tca | Cca | 9 | 9 | B.1.36.17 | 0.004447 |
ORF7a | 81 | S81T | Tca | Aca | 9 | 9 | B.1.617.2 | 0.000034 |
ORF7a | 81 | S81del | TCA | --- | 9 | 9 | L.1 | 0.017143 |
ORF7a | 81 | S81K | TCa | AAa | 8 | 8 | All | 0.000002 |
ORF7a | 81 | S81X | tCa | tGa | 8 | 8 | AY.103 | 0.00005 |
ORF7a | 81 | S81del | TCA | --- | 8 | 8 | AY.113 | 0.001139 |
ORF7a | 81 | S81L | tCa | tTa | 8 | 8 | AY.117 | 0.000676 |
ORF7a | 81 | S81L | tCa | tTa | 8 | 8 | AY.119 | 0.000282 |
ORF7a | 81 | S81L | tCa | tTa | 8 | 8 | AY.120 | 0.000297 |
ORF7a | 81 | S81del | TCA | --- | 8 | 8 | AY.120.1 | 0.002568 |
ORF7a | 81 | S81L | tCa | tTa | 8 | 8 | AY.121 | 0.001083 |
ORF7a | 81 | S81S | tcA | tcT | 7 | 8 | AY.29 | 0.00011 |
ORF7a | 81 | S81S | tcA | tcC | 1 | 8 | AY.29 | 0.000016 |
ORF7a | 81 | S81A | Tca | Gca | 8 | 8 | AY.30 | 0.003166 |
ORF7a | 81 | S81A | Tca | Gca | 8 | 8 | AY.35 | 0.001864 |
ORF7a | 81 | S81del | TCA | --- | 8 | 8 | AY.7 | 0.001568 |
ORF7a | 81 | S81S | tcA | tcG | 8 | 8 | AY.90 | 0.005476 |
ORF7a | 81 | S81del | TCA | --- | 8 | 8 | B.1.1.231 | 0.024768 |
ORF7a | 81 | S81K | TCa | AAa | 8 | 8 | B.1.1.7 | 0.000007 |
ORF7a | 81 | S81del | TCA | --- | 8 | 8 | B.1.160.31 | 0.064516 |
ORF7a | 81 | S81L | tCa | tTa | 8 | 8 | B.1.526 | 0.000188 |
ORF7a | 81 | S81R | TCa | AGa | 7 | 7 | All | 0.000001 |
ORF7a | 81 | S81S | tcA | tcG | 5 | 7 | AY.100 | 0.00023 |
ORF7a | 81 | S81S | tcA | tcT | 1 | 7 | AY.100 | 0.000046 |
ORF7a | 81 | S81S | tcA | tcC | 1 | 7 | AY.100 | 0.000046 |
ORF7a | 81 | S81S | tcA | tcG | 4 | 7 | AY.103 | 0.000025 |
ORF7a | 81 | S81S | tcA | tcC | 3 | 7 | AY.103 | 0.000019 |
ORF7a | 81 | S81del | TCA | --- | 7 | 7 | AY.29.1 | 0.001544 |
ORF7a | 81 | S81del | TCA | --- | 7 | 7 | AY.34 | 0.000679 |
ORF7a | 81 | S81del | TCA | --- | 7 | 7 | AY.35 | 0.001631 |
ORF7a | 81 | S81A | Tca | Gca | 7 | 7 | AY.4 | 0.000011 |
ORF7a | 81 | S81L | tCa | tTa | 7 | 7 | AY.40 | 0.00675 |
ORF7a | 81 | S81del | TCA | --- | 7 | 7 | AY.45 | 0.000852 |
ORF7a | 81 | S81del1 | Tca | -ca | 7 | 7 | AY.5 | 0.000145 |
ORF7a | 81 | S81del | TCA | --- | 7 | 7 | AY.54 | 0.000667 |
ORF7a | 81 | S81L | tCa | tTa | 7 | 7 | AY.61 | 0.000733 |
ORF7a | 81 | S81del | TCA | --- | 7 | 7 | AY.9.2 | 0.000257 |
ORF7a | 81 | S81P | Tca | Cca | 7 | 7 | B | 0.000895 |
ORF7a | 81 | S81L | tCa | tTa | 7 | 7 | B.1.1.224 | 0.1 |
ORF7a | 81 | S81del2 | TCa | --a | 7 | 7 | B.1.177 | 0.000092 |
ORF7a | 81 | S81P | Tca | Cca | 6 | 6 | AY.102 | 0.000159 |
ORF7a | 81 | S81T | Tca | Aca | 6 | 6 | AY.103 | 0.000037 |
ORF7a | 81 | S81del | TCA | --- | 6 | 6 | AY.33 | 0.000401 |
ORF7a | 81 | S81del2 | TCa | --a | 6 | 6 | AY.4 | 0.000009 |
ORF7a | 81 | S81P | Tca | Cca | 6 | 6 | AY.47 | 0.000187 |
ORF7a | 81 | S81L | tCa | tTa | 6 | 6 | AY.5.3 | 0.002024 |
ORF7a | 81 | S81L | tCa | tTa | 6 | 6 | AY.84 | 0.002625 |
ORF7a | 81 | S81L | tCa | tTa | 6 | 6 | AY.92 | 0.001724 |
ORF7a | 81 | S81L | tCa | tTa | 6 | 6 | AY.98.1 | 0.000291 |
ORF7a | 81 | S81S | tcA | tcT | 5 | 6 | AY.98.1 | 0.000242 |
ORF7a | 81 | S81S | tcA | tcG | 1 | 6 | AY.98.1 | 0.000048 |
ORF7a | 81 | S81R | TCa | AGa | 6 | 6 | B.1.177.21 | 0.000459 |
ORF7a | 81 | S81P | Tca | Cca | 6 | 6 | C.37 | 0.000696 |
ORF7a | 81 | S81del | TCA | --- | 6 | 6 | P.1.15 | 0.001394 |
ORF7a | 81 | S81I | TCa | ATa | 4 | 5 | All | 0.000001 |
ORF7a | 81 | S81I | TCA | ATC | 1 | 5 | All | 0 |
ORF7a | 81 | S81del | TCA | --- | 5 | 5 | AY.106 | 0.001674 |
ORF7a | 81 | S81del | TCA | --- | 5 | 5 | AY.114 | 0.001156 |
ORF7a | 81 | S81L | tCa | tTa | 5 | 5 | AY.12 | 0.00158 |
ORF7a | 81 | S81L | tCa | tTa | 5 | 5 | AY.27 | 0.000324 |
ORF7a | 81 | S81X | tCa | tAa | 5 | 5 | AY.43 | 0.000022 |
ORF7a | 81 | S81del2 | TCa | --a | 5 | 5 | AY.44 | 0.00003 |
ORF7a | 81 | S81S | tcA | tcT | 3 | 5 | AY.44 | 0.000018 |
ORF7a | 81 | S81S | tcA | tcG | 1 | 5 | AY.44 | 0.000006 |
ORF7a | 81 | S81S | tcA | tcC | 1 | 5 | AY.44 | 0.000006 |
ORF7a | 81 | S81L | tCa | tTa | 5 | 5 | AY.45 | 0.000608 |
ORF7a | 81 | S81L | tCa | tTa | 5 | 5 | AY.47 | 0.000156 |
ORF7a | 81 | S81del | TCA | --- | 5 | 5 | AY.61 | 0.000524 |
ORF7a | 81 | S81L | tCa | tTa | 5 | 5 | AY.7.1 | 0.000564 |
ORF7a | 81 | S81S | tcA | tcG | 4 | 5 | AY.74 | 0.000463 |
ORF7a | 81 | S81S | tcA | tcT | 1 | 5 | AY.74 | 0.000116 |
ORF7a | 81 | S81del | TCA | --- | 5 | 5 | AY.80 | 0.005643 |
ORF7a | 81 | S81L | tCa | tTa | 5 | 5 | B.1.1.284 | 0.000537 |
ORF7a | 81 | S81del | TCA | --- | 5 | 5 | B.1.243 | 0.000348 |
ORF7a | 81 | S81L | tCa | tTa | 5 | 5 | B.1.258 | 0.000333 |
ORF7a | 81 | S81del | TCA | --- | 5 | 5 | B.1.375 | 0.004098 |
ORF7a | 81 | S81del | TCA | --- | 5 | 5 | B.1.70 | 0.121951 |
ORF7a | 81 | S81P | Tca | Cca | 5 | 5 | Q.3 | 0.000725 |
ORF7a | 81 | S81del | TCA | --- | 4 | 4 | A | 0.001548 |
ORF7a | 81 | S81L | tCa | tTa | 4 | 4 | A.27 | 0.006623 |
ORF7a | 81 | S81del | TCA | --- | 4 | 4 | AY.102 | 0.000106 |
ORF7a | 81 | S81S | tcA | tcT | 3 | 4 | AY.102 | 0.00008 |
ORF7a | 81 | S81S | tcA | tcC | 1 | 4 | AY.102 | 0.000027 |
ORF7a | 81 | S81del2 | TCa | --a | 3 | 4 | AY.103 | 0.000019 |
ORF7a | 81 | S81del2 | tCA | t-- | 1 | 4 | AY.103 | 0.000006 |
ORF7a | 81 | S81P | Tca | Cca | 4 | 4 | AY.106 | 0.00134 |
ORF7a | 81 | S81P | Tca | Cca | 4 | 4 | AY.113 | 0.00057 |
ORF7a | 81 | S81L | tCa | tTa | 4 | 4 | AY.113 | 0.00057 |
ORF7a | 81 | S81S | tcA | tcG | 3 | 4 | AY.113 | 0.000427 |
ORF7a | 81 | S81S | tcA | tcT | 1 | 4 | AY.113 | 0.000142 |
ORF7a | 81 | S81L | tCa | tTa | 4 | 4 | AY.116.1 | 0.001246 |
ORF7a | 81 | S81X | tCa | tAa | 4 | 4 | AY.118 | 0.000251 |
ORF7a | 81 | S81del | TCA | --- | 4 | 4 | AY.14 | 0.000352 |
ORF7a | 81 | S81L | tCa | tTa | 4 | 4 | AY.26 | 0.000113 |
ORF7a | 81 | S81T | Tca | Aca | 4 | 4 | AY.30 | 0.001583 |
ORF7a | 81 | S81T | Tca | Aca | 4 | 4 | AY.39 | 0.000099 |
ORF7a | 81 | S81del1 | Tca | -ca | 3 | 4 | AY.39 | 0.000074 |
ORF7a | 81 | S81del1 | tcA | tc- | 1 | 4 | AY.39 | 0.000025 |
ORF7a | 81 | S81T | Tca | Aca | 4 | 4 | AY.4 | 0.000006 |
ORF7a | 81 | S81del | TCA | --- | 4 | 4 | AY.4.5 | 0.00043 |
ORF7a | 81 | S81L | tCa | tTa | 4 | 4 | AY.42 | 0.000161 |
ORF7a | 81 | S81del1 | tcA | tc- | 4 | 4 | AY.44 | 0.000024 |
ORF7a | 81 | S81L | tCa | tTa | 4 | 4 | AY.46.2 | 0.002541 |
ORF7a | 81 | S81del | TCA | --- | 4 | 4 | AY.68 | 0.001095 |
ORF7a | 81 | S81L | tCa | tTa | 4 | 4 | AY.68 | 0.001095 |
ORF7a | 81 | S81del1 | tcA | tc- | 4 | 4 | AY.75 | 0.000224 |
ORF7a | 81 | S81L | tCa | tTa | 4 | 4 | AY.9.2 | 0.000147 |
ORF7a | 81 | S81L | tCa | tTa | 4 | 4 | AY.99.2 | 0.000369 |
ORF7a | 81 | S81X | tCa | tAa | 3 | 4 | B.1 | 0.000027 |
ORF7a | 81 | S81X | tCa | tGa | 1 | 4 | B.1 | 0.000009 |
ORF7a | 81 | S81del | TCA | --- | 4 | 4 | B.1.1.25 | 0.002274 |
ORF7a | 81 | S81S | tcA | tcG | 3 | 4 | B.1.2 | 0.000026 |
ORF7a | 81 | S81S | tcA | tcT | 1 | 4 | B.1.2 | 0.000009 |
ORF7a | 81 | S81del | TCA | --- | 4 | 4 | B.1.234 | 0.000528 |
ORF7a | 81 | S81S | tcA | tcT | 4 | 4 | B.1.258.14 | 0.003922 |
ORF7a | 81 | S81P | Tca | Cca | 4 | 4 | B.1.448 | 0.010499 |
ORF7a | 81 | S81P | Tca | Cca | 4 | 4 | B.1.517 | 0.001708 |
ORF7a | 81 | S81L | tCa | tTa | 4 | 4 | B.1.525 | 0.000453 |
ORF7a | 81 | S81P | Tca | Cca | 4 | 4 | B.1.526 | 0.000094 |
ORF7a | 81 | S81P | Tca | Cca | 4 | 4 | B.1.575 | 0.001214 |
ORF7a | 81 | S81del | TCA | --- | 4 | 4 | Q.1 | 0.000505 |
ORF7a | 81 | S81Q | TCa | CAa | 3 | 3 | All | 0.000001 |
ORF7a | 81 | S81T | Tca | Aca | 2 | 3 | AY.100 | 0.000092 |
ORF7a | 81 | S81T | TcA | AcC | 1 | 3 | AY.100 | 0.000046 |
ORF7a | 81 | S81del | TCA | --- | 3 | 3 | AY.13 | 0.000483 |
ORF7a | 81 | S81P | Tca | Cca | 3 | 3 | AY.20 | 0.000117 |
ORF7a | 81 | S81L | tCa | tTa | 3 | 3 | AY.23 | 0.000209 |
ORF7a | 81 | S81del | TCA | --- | 3 | 3 | AY.24 | 0.001293 |
ORF7a | 81 | S81T | Tca | Aca | 3 | 3 | AY.25 | 0.000018 |
ORF7a | 81 | S81L | tCa | tTa | 3 | 3 | AY.29.1 | 0.000662 |
ORF7a | 81 | S81L | tCa | tTa | 3 | 3 | AY.34.1 | 0.00153 |
ORF7a | 81 | S81P | Tca | Cca | 3 | 3 | AY.36 | 0.000445 |
ORF7a | 81 | S81del | TCA | --- | 3 | 3 | AY.37 | 0.000948 |
ORF7a | 81 | S81P | Tca | Cca | 3 | 3 | AY.39 | 0.000074 |
ORF7a | 81 | S81L | tCa | tTa | 3 | 3 | AY.39 | 0.000074 |
ORF7a | 81 | S81del | TCA | --- | 3 | 3 | AY.53 | 0.000863 |
ORF7a | 81 | S81L | tCa | tTa | 3 | 3 | AY.54 | 0.000286 |
ORF7a | 81 | S81A | Tca | Gca | 2 | 3 | AY.59 | 0.001059 |
ORF7a | 81 | S81A | TcA | GcT | 1 | 3 | AY.59 | 0.00053 |
ORF7a | 81 | S81L | tCa | tTa | 3 | 3 | AY.6 | 0.000123 |
ORF7a | 81 | S81del | TCA | --- | 3 | 3 | AY.7.1 | 0.000338 |
ORF7a | 81 | S81P | Tca | Cca | 3 | 3 | AY.74 | 0.000347 |
ORF7a | 81 | S81X | tCa | tAa | 2 | 3 | AY.75 | 0.000112 |
ORF7a | 81 | S81X | tCa | tGa | 1 | 3 | AY.75 | 0.000056 |
ORF7a | 81 | S81G | TCa | GGa | 3 | 3 | AY.85 | 0.001282 |
ORF7a | 81 | S81del | TCA | --- | 3 | 3 | AY.88 | 0.002653 |
ORF7a | 81 | S81P | Tca | Cca | 3 | 3 | AY.98.1 | 0.000145 |
ORF7a | 81 | S81P | Tca | Cca | 3 | 3 | B.1.1 | 0.000054 |
ORF7a | 81 | S81S | tcA | tcG | 2 | 3 | B.1.1 | 0.000036 |
ORF7a | 81 | S81S | tcA | tcT | 1 | 3 | B.1.1 | 0.000018 |
ORF7a | 81 | S81del | TCA | --- | 3 | 3 | B.1.1.121 | 0.007282 |
ORF7a | 81 | S81del | TCA | --- | 3 | 3 | B.1.1.170 | 0.003741 |
ORF7a | 81 | S81L | tCa | tTa | 3 | 3 | B.1.1.214 | 0.000166 |
ORF7a | 81 | S81L | tCa | tTa | 3 | 3 | B.1.1.348 | 0.002389 |
ORF7a | 81 | S81P | Tca | Cca | 3 | 3 | B.1.1.369 | 0.001339 |
ORF7a | 81 | S81L | tCa | tTa | 3 | 3 | B.1.1.37 | 0.000579 |
ORF7a | 81 | S81del | TCA | --- | 3 | 3 | B.1.1.37 | 0.000579 |
ORF7a | 81 | S81P | Tca | Cca | 3 | 3 | B.1.1.39 | 0.001529 |
ORF7a | 81 | S81P | Tca | Cca | 3 | 3 | B.1.1.519 | 0.000119 |
ORF7a | 81 | S81L | tCa | tTa | 3 | 3 | B.1.1.61 | 0.026316 |
ORF7a | 81 | S81del1 | tcA | tc- | 2 | 3 | B.1.1.7 | 0.000002 |
ORF7a | 81 | S81del1 | Tca | -ca | 1 | 3 | B.1.1.7 | 0.000001 |
ORF7a | 81 | S81P | Tca | Cca | 3 | 3 | B.1.149 | 0.010274 |
ORF7a | 81 | S81P | Tca | Cca | 3 | 3 | B.1.177 | 0.00004 |
ORF7a | 81 | S81del | TCA | --- | 3 | 3 | B.1.214.2 | 0.001799 |
ORF7a | 81 | S81P | Tca | Cca | 3 | 3 | B.1.258 | 0.0002 |
ORF7a | 81 | S81del | TCA | --- | 3 | 3 | B.1.351.2 | 0.000908 |
ORF7a | 81 | S81L | tCa | tTa | 3 | 3 | B.1.36 | 0.000438 |
ORF7a | 81 | S81L | tCa | tTa | 3 | 3 | B.1.36.29 | 0.001552 |
ORF7a | 81 | S81P | Tca | Cca | 3 | 3 | B.1.361 | 0.003866 |
ORF7a | 81 | S81L | tCa | tTa | 3 | 3 | B.1.367 | 0.002377 |
ORF7a | 81 | S81P | Tca | Cca | 3 | 3 | B.1.427 | 0.000151 |
ORF7a | 81 | S81P | Tca | Cca | 3 | 3 | B.1.468 | 0.017143 |
ORF7a | 81 | S81del | TCA | --- | 3 | 3 | B.1.575 | 0.00091 |
ORF7a | 81 | S81L | tCa | tTa | 3 | 3 | B.1.596 | 0.000261 |
ORF7a | 81 | S81L | tCa | tTa | 3 | 3 | B.1.617.1 | 0.000387 |
ORF7a | 81 | S81del | TCA | --- | 3 | 3 | B.1.626 | 0.017143 |
ORF7a | 81 | S81L | tCa | tTa | 3 | 3 | B.1.637 | 0.000219 |
ORF7a | 81 | S81del | TCA | --- | 3 | 3 | C.12 | 0.021583 |
ORF7a | 81 | S81L | tCa | tTa | 3 | 3 | C.37 | 0.000348 |
ORF7a | 81 | S81L | tCa | tTa | 3 | 3 | P.1.2 | 0.003468 |
ORF7a | 81 | S81L | tCa | tTa | 3 | 3 | P.1.7 | 0.000958 |
ORF7a | 81 | S81S | tcA | tcG | 3 | 3 | P.2 | 0.00056 |
ORF7a | 81 | S81L | tCa | tTa | 3 | 3 | P.2 | 0.00056 |
ORF7a | 81 | S81L | tCa | tTa | 3 | 3 | Q.1 | 0.000379 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | 0.111111 | |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | A.28 | 0.005291 |
ORF7a | 81 | S81C | tCA | tGC | 2 | 2 | All | 0 |
ORF7a | 81 | S81M | TCA | ATG | 2 | 2 | All | 0 |
ORF7a | 81 | S81W | tCA | tGG | 2 | 2 | All | 0 |
ORF7a | 81 | S81I | TCA | ATC | 1 | 2 | AY.100 | 0.000046 |
ORF7a | 81 | S81I | TCa | ATa | 1 | 2 | AY.100 | 0.000046 |
ORF7a | 81 | S81L | tCa | tTa | 2 | 2 | AY.106 | 0.00067 |
ORF7a | 81 | S81A | Tca | Gca | 2 | 2 | AY.106 | 0.00067 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | AY.108 | 0.002205 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | AY.109 | 0.001479 |
ORF7a | 81 | S81P | Tca | Cca | 2 | 2 | AY.117 | 0.000169 |
ORF7a | 81 | S81del1 | tcA | tc- | 1 | 2 | AY.117 | 0.000085 |
ORF7a | 81 | S81del1 | Tca | -ca | 1 | 2 | AY.117 | 0.000085 |
ORF7a | 81 | S81L | tCa | tTa | 2 | 2 | AY.14 | 0.000176 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | AY.19 | 0.002281 |
ORF7a | 81 | S81del1 | tcA | tc- | 2 | 2 | AY.20 | 0.000078 |
ORF7a | 81 | S81A | Tca | Gca | 2 | 2 | AY.25 | 0.000012 |
ORF7a | 81 | S81P | Tca | Cca | 2 | 2 | AY.26 | 0.000057 |
ORF7a | 81 | S81P | Tca | Cca | 2 | 2 | AY.27 | 0.000129 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | AY.27 | 0.000129 |
ORF7a | 81 | S81P | Tca | Cca | 2 | 2 | AY.29 | 0.000032 |
ORF7a | 81 | S81del1 | Tca | -ca | 2 | 2 | AY.3 | 0.00002 |
ORF7a | 81 | S81S | tcA | tcG | 2 | 2 | AY.3 | 0.00002 |
ORF7a | 81 | S81L | tCa | tTa | 2 | 2 | AY.32 | 0.001065 |
ORF7a | 81 | S81P | Tca | Cca | 2 | 2 | AY.39.1 | 0.000079 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF7a | 81 | S81P | Tca | Cca | 2 | 2 | AY.42 | 0.00008 |
ORF7a | 81 | S81del1 | TCA | -NN | 2 | 2 | AY.43 | 0.000009 |
ORF7a | 81 | S81S | tcA | tcG | 1 | 2 | AY.43 | 0.000004 |
ORF7a | 81 | S81S | tcA | tcC | 1 | 2 | AY.43 | 0.000004 |
ORF7a | 81 | S81A | Tca | Gca | 2 | 2 | AY.44 | 0.000012 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | AY.46 | 0.000208 |
ORF7a | 81 | S81L | tCa | tTa | 2 | 2 | AY.46.1 | 0.002053 |
ORF7a | 81 | S81L | tCa | tTa | 2 | 2 | AY.46.4 | 0.000329 |
ORF7a | 81 | S81S | tcA | tcT | 2 | 2 | AY.46.6 | 0.000144 |
ORF7a | 81 | S81X | tCa | tAa | 2 | 2 | AY.47 | 0.000062 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | AY.48 | 0.00093 |
ORF7a | 81 | S81P | Tca | Cca | 2 | 2 | AY.48 | 0.00093 |
ORF7a | 81 | S81L | tCa | tTa | 2 | 2 | AY.65 | 0.001066 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | AY.65 | 0.001066 |
ORF7a | 81 | S81L | tCa | tTa | 2 | 2 | AY.75 | 0.000112 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | AY.75.1 | 0.000361 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | AY.85 | 0.000854 |
ORF7a | 81 | S81L | tCa | tTa | 2 | 2 | AY.85 | 0.000854 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | AY.9.1 | 0.000167 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | AY.90 | 0.001369 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | AY.91 | 0.001461 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | AY.92 | 0.000575 |
ORF7a | 81 | S81L | tCa | tTa | 2 | 2 | AY.93 | 0.000546 |
ORF7a | 81 | S81T | Tca | Aca | 2 | 2 | AY.95 | 0.001522 |
ORF7a | 81 | S81T | Tca | Aca | 2 | 2 | AY.98 | 0.000158 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | AY.99 | 0.002099 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | B | 0.000256 |
ORF7a | 81 | S81G | TCa | GGa | 2 | 2 | B.1 | 0.000018 |
ORF7a | 81 | S81S | tcA | tcG | 1 | 2 | B.1 | 0.000009 |
ORF7a | 81 | S81S | tcA | tcT | 1 | 2 | B.1 | 0.000009 |
ORF7a | 81 | S81L | tCa | tTa | 2 | 2 | B.1.1.216 | 0.001781 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | B.1.1.220 | 0.003717 |
ORF7a | 81 | S81P | Tca | Cca | 2 | 2 | B.1.1.377 | 0.002762 |
ORF7a | 81 | S81L | tCa | tTa | 2 | 2 | B.1.1.519 | 0.000079 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | B.1.1.521 | 0.010695 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | B.1.1.70 | 0.000682 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | B.1.177.10 | 0.001756 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | B.1.177.15 | 0.001262 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | B.1.177.55 | 0.004662 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | B.1.177.60 | 0.000437 |
ORF7a | 81 | S81L | tCa | tTa | 2 | 2 | B.1.177.60 | 0.000437 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | B.1.177.81 | 0.000379 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | B.1.177.86 | 0.000367 |
ORF7a | 81 | S81del1 | Tca | -ca | 2 | 2 | B.1.2 | 0.000018 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | B.1.221 | 0.000142 |
ORF7a | 81 | S81X | tCa | tAa | 2 | 2 | B.1.221.4 | 0.008333 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | B.1.240 | 0.000431 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | B.1.258.11 | 0.000793 |
ORF7a | 81 | S81P | Tca | Cca | 2 | 2 | B.1.311 | 0.000549 |
ORF7a | 81 | S81S | tcA | tcT | 2 | 2 | B.1.311 | 0.000549 |
ORF7a | 81 | S81L | tCa | tTa | 2 | 2 | B.1.351.5 | 0.001199 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF7a | 81 | S81L | tCa | tTa | 2 | 2 | B.1.36.17 | 0.000988 |
ORF7a | 81 | S81P | Tca | Cca | 2 | 2 | B.1.369 | 0.00057 |
ORF7a | 81 | S81L | tCa | tTa | 2 | 2 | B.1.438.1 | 0.000215 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | B.1.499 | 0.002101 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | B.1.517.1 | 0.010526 |
ORF7a | 81 | S81S | tcA | tcG | 2 | 2 | B.1.555 | 0.044444 |
ORF7a | 81 | S81L | tCa | tTa | 2 | 2 | B.1.588 | 0.00182 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | B.1.595 | 0.000522 |
ORF7a | 81 | S81P | Tca | Cca | 2 | 2 | B.1.596 | 0.000174 |
ORF7a | 81 | S81S | tcA | tcG | 1 | 2 | B.1.617.1 | 0.000129 |
ORF7a | 81 | S81S | tcA | tcC | 1 | 2 | B.1.617.1 | 0.000129 |
ORF7a | 81 | S81L | tCa | tTa | 2 | 2 | B.1.628 | 0.000705 |
ORF7a | 81 | S81S | tcA | tcG | 2 | 2 | B.1.637 | 0.000146 |
ORF7a | 81 | S81L | tCa | tTa | 2 | 2 | C.38 | 0.016129 |
ORF7a | 81 | S81S | tcA | tcG | 2 | 2 | D.2 | 0.00015 |
ORF7a | 81 | S81L | tCa | tTa | 2 | 2 | D.2 | 0.00015 |
ORF7a | 81 | S81del | TCA | --- | 2 | 2 | P.1.14 | 0.000096 |
ORF7a | 81 | S81A | Tca | Gca | 2 | 2 | P.1.14 | 0.000096 |
ORF7a | 81 | S81A | Tca | Gca | 2 | 2 | Q.2 | 0.001227 |
ORF7a | 81 | S81X | tCa | tAa | 1 | 1 | A | 0.000387 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | A.1 | 0.000282 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF7a | 81 | S81T | Tca | Aca | 1 | 1 | A.2.4 | 0.003367 |
ORF7a | 81 | S81A | Tca | Gca | 1 | 1 | A.2.5 | 0.000499 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | A.2.5 | 0.000499 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | A.2.5.3 | 0.010309 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | A.23 | 0.010526 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | A.23.1 | 0.000704 |
ORF7a | 81 | S81A | Tca | Gca | 1 | 1 | A.23.1 | 0.000704 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AD.1 | 0.004115 |
ORF7a | 81 | S81F | tCA | tTC | 1 | 1 | All | 0 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | AU.3 | 0.00211 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.10 | 0.00053 |
ORF7a | 81 | S81A | Tca | Gca | 1 | 1 | AY.100 | 0.000046 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | AY.100 | 0.000046 |
ORF7a | 81 | S81F | tCA | tTC | 1 | 1 | AY.100 | 0.000046 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | AY.101 | 0.00049 |
ORF7a | 81 | S81T | Tca | Aca | 1 | 1 | AY.102 | 0.000027 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | AY.104 | 0.001984 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.105 | 0.000643 |
ORF7a | 81 | S81T | Tca | Aca | 1 | 1 | AY.106 | 0.000335 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | AY.108 | 0.001103 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.109 | 0.00074 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | AY.109 | 0.00074 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.11 | 0.001339 |
ORF7a | 81 | S81T | Tca | Aca | 1 | 1 | AY.110 | 0.000113 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.110 | 0.000113 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | AY.110 | 0.000113 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.111 | 0.000183 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | AY.111 | 0.000183 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.114 | 0.000231 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | AY.116 | 0.000287 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | AY.116.1 | 0.000311 |
ORF7a | 81 | S81T | Tca | Aca | 1 | 1 | AY.117 | 0.000085 |
ORF7a | 81 | S81del2 | TCA | --N | 1 | 1 | AY.117 | 0.000085 |
ORF7a | 81 | S81T | Tca | Aca | 1 | 1 | AY.118 | 0.000063 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.118 | 0.000063 |
ORF7a | 81 | S81del2 | tCA | t-- | 1 | 1 | AY.119 | 0.000035 |
ORF7a | 81 | S81S | tcA | tcG | 1 | 1 | AY.119 | 0.000035 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | AY.12 | 0.000316 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.120.1 | 0.000321 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.15 | 0.002222 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.16 | 0.00038 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | AY.16 | 0.00038 |
ORF7a | 81 | S81S | tcA | tcG | 1 | 1 | AY.16 | 0.00038 |
ORF7a | 81 | S81X | tCa | tAa | 1 | 1 | AY.20 | 0.000039 |
ORF7a | 81 | S81A | Tca | Gca | 1 | 1 | AY.23 | 0.00007 |
ORF7a | 81 | S81del1 | tcA | tc- | 1 | 1 | AY.23 | 0.00007 |
ORF7a | 81 | S81del1 | TCA | -NN | 1 | 1 | AY.25 | 0.000006 |
ORF7a | 81 | S81A | Tca | Gca | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 81 | S81T | Tca | Aca | 1 | 1 | AY.29.1 | 0.000221 |
ORF7a | 81 | S81del2 | TCA | --N | 1 | 1 | AY.3 | 0.00001 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.3.1 | 0.000085 |
ORF7a | 81 | S81del2 | TCa | --a | 1 | 1 | AY.3.1 | 0.000085 |
ORF7a | 81 | S81C | tCA | tGC | 1 | 1 | AY.30 | 0.000396 |
ORF7a | 81 | S81A | Tca | Gca | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 81 | S81S | tcA | tcG | 1 | 1 | AY.34 | 0.000097 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | AY.34.1 | 0.00051 |
ORF7a | 81 | S81S | tcA | tcT | 1 | 1 | AY.34.1 | 0.00051 |
ORF7a | 81 | S81del1 | tcA | tc- | 1 | 1 | AY.36 | 0.000148 |
ORF7a | 81 | S81S | tcA | tcG | 1 | 1 | AY.36 | 0.000148 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | AY.38 | 0.000499 |
ORF7a | 81 | S81A | Tca | Gca | 1 | 1 | AY.39 | 0.000025 |
ORF7a | 81 | S81S | tcA | tcT | 1 | 1 | AY.39 | 0.000025 |
ORF7a | 81 | S81del2 | TCA | --N | 1 | 1 | AY.39.1 | 0.00004 |
ORF7a | 81 | S81A | Tca | Gca | 1 | 1 | AY.39.1 | 0.00004 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | AY.4.1 | 0.000737 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | AY.4.4 | 0.000409 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.41 | 0.000294 |
ORF7a | 81 | S81del1 | Tca | -ca | 1 | 1 | AY.42 | 0.00004 |
ORF7a | 81 | S81A | Tca | Gca | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 81 | S81C | tCA | tGC | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 81 | S81Q | TCa | CAa | 1 | 1 | AY.44 | 0.000006 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | AY.45 | 0.000122 |
ORF7a | 81 | S81A | Tca | Gca | 1 | 1 | AY.45 | 0.000122 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.46 | 0.000104 |
ORF7a | 81 | S81A | Tca | Gca | 1 | 1 | AY.46 | 0.000104 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | AY.46 | 0.000104 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.46.3 | 0.000934 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | AY.46.5 | 0.000198 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.46.6 | 0.000072 |
ORF7a | 81 | S81A | Tca | Gca | 1 | 1 | AY.47 | 0.000031 |
ORF7a | 81 | S81S | tcA | tcG | 1 | 1 | AY.47 | 0.000031 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | AY.5 | 0.000021 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.5.4 | 0.000277 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.51 | 0.000909 |
ORF7a | 81 | S81X | tCa | tAa | 1 | 1 | AY.52 | 0.000814 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | AY.52 | 0.000814 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.53 | 0.000288 |
ORF7a | 81 | S81T | Tca | Aca | 1 | 1 | AY.54 | 0.000095 |
ORF7a | 81 | S81A | Tca | Gca | 1 | 1 | AY.54 | 0.000095 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.57 | 0.000656 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.58 | 0.000907 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | AY.59 | 0.00053 |
ORF7a | 81 | S81S | tcA | tcT | 1 | 1 | AY.59 | 0.00053 |
ORF7a | 81 | S81X | tCa | tGa | 1 | 1 | AY.6 | 0.000041 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | AY.6 | 0.000041 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | AY.62 | 0.000436 |
ORF7a | 81 | S81A | Tca | Gca | 1 | 1 | AY.62 | 0.000436 |
ORF7a | 81 | S81S | tcA | tcG | 1 | 1 | AY.62 | 0.000436 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.62 | 0.000436 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | AY.66 | 0.00107 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.67 | 0.000464 |
ORF7a | 81 | S81A | Tca | Gca | 1 | 1 | AY.67 | 0.000464 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | AY.69 | 0.000187 |
ORF7a | 81 | S81del1 | Tca | -ca | 1 | 1 | AY.7 | 0.000196 |
ORF7a | 81 | S81X | tCa | tAa | 1 | 1 | AY.7.1 | 0.000113 |
ORF7a | 81 | S81I | TCa | ATa | 1 | 1 | AY.7.1 | 0.000113 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.7.2 | 0.000559 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | AY.70 | 0.000209 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | AY.73 | 0.000665 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.74 | 0.000116 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.75.1 | 0.00018 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | AY.75.1 | 0.00018 |
ORF7a | 81 | S81T | Tca | Aca | 1 | 1 | AY.79 | 0.001211 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.81 | 0.001992 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | AY.84 | 0.000437 |
ORF7a | 81 | S81A | Tca | Gca | 1 | 1 | AY.84 | 0.000437 |
ORF7a | 81 | S81W | tCA | tGG | 1 | 1 | AY.85 | 0.000427 |
ORF7a | 81 | S81R | TCa | AGa | 1 | 1 | AY.85 | 0.000427 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | AY.87 | 0.000833 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | AY.87 | 0.000833 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.88 | 0.000884 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | AY.9 | 0.000068 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.9 | 0.000068 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | AY.9.1 | 0.000084 |
ORF7a | 81 | S81S | tcA | tcT | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | AY.94 | 0.000443 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | AY.95 | 0.000761 |
ORF7a | 81 | S81del2 | TCa | --a | 1 | 1 | AY.98.1 | 0.000048 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | AY.99.2 | 0.000092 |
ORF7a | 81 | S81S | tcA | tcG | 1 | 1 | AY.99.2 | 0.000092 |
ORF7a | 81 | S81A | Tca | Gca | 1 | 1 | AY.99.2 | 0.000092 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF7a | 81 | S81X | tCa | tAa | 1 | 1 | B | 0.000128 |
ORF7a | 81 | S81T | Tca | Aca | 1 | 1 | B | 0.000128 |
ORF7a | 81 | S81A | Tca | Gca | 1 | 1 | B.1 | 0.000009 |
ORF7a | 81 | S81del2 | tCA | t-- | 1 | 1 | B.1 | 0.000009 |
ORF7a | 81 | S81T | Tca | Aca | 1 | 1 | B.1.1 | 0.000018 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.1.1 | 0.000327 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.1.137 | 0.0125 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.1.157 | 0.000913 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.1.174 | 0.003378 |
ORF7a | 81 | S81T | Tca | Aca | 1 | 1 | B.1.1.174 | 0.003378 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.1.192 | 0.002309 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.1.194 | 0.00495 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.1.205 | 0.003717 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | B.1.1.222 | 0.000204 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.1.265 | 0.003155 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.1.277 | 0.000759 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.1.28 | 0.000311 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | B.1.1.28 | 0.000311 |
ORF7a | 81 | S81S | tcA | tcG | 1 | 1 | B.1.1.289 | 0.002083 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.1.303 | 0.002762 |
ORF7a | 81 | S81X | tCA | tAG | 1 | 1 | B.1.1.306 | 0.000438 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.1.317 | 0.000412 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.1.317 | 0.000412 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.1.318 | 0.000302 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.1.335 | 0.012987 |
ORF7a | 81 | S81A | Tca | Gca | 1 | 1 | B.1.1.343 | 0.020833 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.1.366 | 0.015873 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.1.372 | 0.000689 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.1.416 | 0.000905 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.1.432 | 0.001266 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.1.437 | 0.010417 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | B.1.1.453 | 0.008475 |
ORF7a | 81 | S81del2 | TCa | --a | 1 | 1 | B.1.1.519 | 0.00004 |
ORF7a | 81 | S81S | tcA | tcT | 1 | 1 | B.1.1.519 | 0.00004 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.1.525 | 0.005464 |
ORF7a | 81 | S81I | TCa | ATa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 81 | S81Q | TCa | CAa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 81 | S81M | TCA | ATG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 81 | S81W | tCA | tGG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.1.70 | 0.000341 |
ORF7a | 81 | S81S | tcA | tcT | 1 | 1 | B.1.1.8 | 0.003584 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.108 | 0.005814 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.115 | 0.021739 |
ORF7a | 81 | S81S | tcA | tcG | 1 | 1 | B.1.160 | 0.000031 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | B.1.160 | 0.000031 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.160.16 | 0.000929 |
ORF7a | 81 | S81del1 | tcA | tc- | 1 | 1 | B.1.160.30 | 0.002976 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.160.31 | 0.008065 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.177.31 | 0.011494 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF7a | 81 | S81S | tcA | tcT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.177.48 | 0.003125 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.177.50 | 0.004695 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | B.1.177.52 | 0.001757 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.177.53 | 0.002392 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | B.1.177.57 | 0.000281 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.177.63 | 0.002703 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | B.1.177.72 | 0.00339 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | B.1.177.81 | 0.000189 |
ORF7a | 81 | S81S | tcA | tcT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF7a | 81 | S81S | tcA | tcT | 1 | 1 | B.1.177.85 | 0.005435 |
ORF7a | 81 | S81del2 | tCA | t-- | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 81 | S81X | tCA | tAG | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.206 | 0.000816 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.214.2 | 0.0006 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | B.1.221 | 0.000071 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.221.1 | 0.002907 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.236 | 0.002053 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.252 | 0.006623 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | B.1.258.17 | 0.000104 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.265 | 0.001271 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.265 | 0.001271 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | B.1.279 | 0.000514 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.287 | 0.030303 |
ORF7a | 81 | S81S | tcA | tcT | 1 | 1 | B.1.298 | 0.002114 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF7a | 81 | S81S | tcA | tcT | 1 | 1 | B.1.324 | 0.001605 |
ORF7a | 81 | S81T | Tca | Aca | 1 | 1 | B.1.351 | 0.00003 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.351.3 | 0.000876 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | B.1.36 | 0.000146 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.36.18 | 0.00042 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | B.1.36.29 | 0.000517 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.36.31 | 0.001751 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.369 | 0.000285 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.371 | 0.001122 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.378 | 0.006849 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.396 | 0.000706 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.406 | 0.006061 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | B.1.408 | 0.00369 |
ORF7a | 81 | S81X | tCa | tAa | 1 | 1 | B.1.416 | 0.001269 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.424 | 0.008065 |
ORF7a | 81 | S81del1 | tcA | tc- | 1 | 1 | B.1.429 | 0.000024 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | B.1.429 | 0.000024 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.459 | 0.004082 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.470 | 0.001404 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | B.1.471 | 0.002732 |
ORF7a | 81 | S81X | tCa | tAa | 1 | 1 | B.1.497 | 0.000315 |
ORF7a | 81 | S81T | Tca | Aca | 1 | 1 | B.1.497 | 0.000315 |
ORF7a | 81 | S81P | TcA | CcT | 1 | 1 | B.1.497 | 0.000315 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | B.1.525 | 0.000113 |
ORF7a | 81 | S81del1 | tcA | tc- | 1 | 1 | B.1.525 | 0.000113 |
ORF7a | 81 | S81S | tcA | tcG | 1 | 1 | B.1.525 | 0.000113 |
ORF7a | 81 | S81del2 | TCa | --a | 1 | 1 | B.1.526 | 0.000024 |
ORF7a | 81 | S81S | tcA | tcG | 1 | 1 | B.1.526 | 0.000024 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.527 | 0.003704 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.535 | 0.028571 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.561 | 0.000397 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.564.1 | 0.001577 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.568 | 0.001111 |
ORF7a | 81 | S81T | Tca | Aca | 1 | 1 | B.1.575 | 0.000303 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.576 | 0.000907 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.577 | 0.000687 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.582 | 0.000491 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.590 | 0.004545 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.602 | 0.006536 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 81 | S81del1 | tcA | tc- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 81 | S81Q | TCa | CAa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 81 | S81X | tCa | tAa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 81 | S81M | TCA | ATG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 81 | S81I | TCa | ATa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF7a | 81 | S81X | tCa | tAa | 1 | 1 | B.1.623 | 0.000536 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | B.1.623 | 0.000536 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.628 | 0.000352 |
ORF7a | 81 | S81S | tcA | tcC | 1 | 1 | B.1.628 | 0.000352 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.1.629 | 0.013333 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | B.1.77 | 0.045455 |
ORF7a | 81 | S81S | tcA | tcT | 1 | 1 | B.1.8 | 0.001972 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.88.1 | 0.004808 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.9.1 | 0.032258 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | B.1.93 | 0.000934 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | B.3.1 | 0.001658 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | B.6.6 | 0.000889 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | C.16 | 0.00106 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | C.36 | 0.000911 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | C.36.3 | 0.000567 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | C.36.3 | 0.000567 |
ORF7a | 81 | S81del1 | Tca | -ca | 1 | 1 | C.37 | 0.000116 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | D.2 | 0.000075 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | D.2 | 0.000075 |
ORF7a | 81 | S81T | Tca | Aca | 1 | 1 | D.2 | 0.000075 |
ORF7a | 81 | S81S | tcA | tcG | 1 | 1 | D.5 | 0.004975 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | N.5 | 0.001767 |
ORF7a | 81 | S81S | tcA | tcT | 1 | 1 | P.1 | 0.000016 |
ORF7a | 81 | S81del2 | tCA | t-- | 1 | 1 | P.1 | 0.000016 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | P.1.1 | 0.000318 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | P.1.10 | 0.000269 |
ORF7a | 81 | S81A | Tca | Gca | 1 | 1 | P.1.12 | 0.000484 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | P.1.12 | 0.000484 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | P.1.13 | 0.000898 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | P.1.15 | 0.000232 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | P.1.16 | 0.000374 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | P.1.3 | 0.034483 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | P.1.4 | 0.000977 |
ORF7a | 81 | S81P | Tca | Cca | 1 | 1 | P.2 | 0.000187 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | P.2 | 0.000187 |
ORF7a | 81 | S81A | Tca | Gca | 1 | 1 | P.2 | 0.000187 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | P.3 | 0.001595 |
ORF7a | 81 | S81L | tCa | tTa | 1 | 1 | Q.3 | 0.000145 |
ORF7a | 81 | S81S | tcA | tcG | 1 | 1 | Q.4 | 0.000455 |
ORF7a | 81 | S81del | TCA | --- | 1 | 1 | Q.7 | 0.001111 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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