CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 81

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a81S81deldelTCA---68206820127634-27636
ORF7a81S81LnonsyntCatTa438543830.99954427634-27636
ORF7a81S81LnonsyntCAtTG438520.000456127634-27636
ORF7a81S81PnonsynTcaCca157915770.99873327634-27636
ORF7a81S81PnonsynTcACcT157920.0012666227634-27636
ORF7a81S81SsyntcAtcG3471910.55043227634-27636
ORF7a81S81SsyntcAtcT3471360.39193127634-27636
ORF7a81S81SsyntcAtcC347200.057636927634-27636
ORF7a81S81del1delTca-ca139930.66906527634-27636
ORF7a81S81del1deltcAtc-139420.30215827634-27636
ORF7a81S81del1delTCA-NN13940.02877727634-27636
ORF7a81S81TnonsynTcaAca1351330.98518527634-27636
ORF7a81S81TnonsynTcAAcC13510.0074074127634-27636
ORF7a81S81TnonsynTcAAcT13510.0074074127634-27636
ORF7a81S81AnonsynTcaGca1261250.99206327634-27636
ORF7a81S81AnonsynTcAGcT12610.0079365127634-27636
ORF7a81S81XnonsyntCatAa87560.64367827634-27636
ORF7a81S81XnonsyntCatGa87290.33333327634-27636
ORF7a81S81XnonsyntCAtAG8720.022988527634-27636
ORF7a81S81del2delTCa--a44310.70454527634-27636
ORF7a81S81del2delTCA--N4480.18181827634-27636
ORF7a81S81del2deltCAt--4450.11363627634-27636
ORF7a81S81GnonsynTCaGGa29280.96551727634-27636
ORF7a81S81GnonsynTCAGGG2910.034482827634-27636
ORF7a81S81KnonsynTCaAAa88127634-27636
ORF7a81S81RnonsynTCaAGa77127634-27636
ORF7a81S81InonsynTCaATa540.827634-27636
ORF7a81S81InonsynTCAATC510.227634-27636
ORF7a81S81QnonsynTCaCAa33127634-27636
ORF7a81S81MnonsynTCAATG22127634-27636
ORF7a81S81CnonsyntCAtGC22127634-27636
ORF7a81S81WnonsyntCAtGG22127634-27636
ORF7a81S81FnonsyntCAtTC11127634-27636

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a81S81delTCA---68206820All0.001304
ORF7a81S81LtCatTa43834385All0.000838
ORF7a81S81LtCAtTG24385All0
ORF7a81S81delTCA---20362036AY.40.003169
ORF7a81S81PTcaCca15771579All0.000302
ORF7a81S81PTcACcT21579All0
ORF7a81S81delTCA---11871187B.1.1.70.001063
ORF7a81S81LtCatTa11791179B.1.1.70.001055
ORF7a81S81LtCatTa10711071AY.40.001667
ORF7a81S81delTCA---407407AY.4.20.008827
ORF7a81S81LtCatTa395395A0.152864
ORF7a81S81StcAtcG191347All0.000037
ORF7a81S81StcAtcT136347All0.000026
ORF7a81S81StcAtcC20347All0.000004
ORF7a81S81PTcaCca345345Q.70.383333
ORF7a81S81LtCatTa296296B.1.617.20.001115
ORF7a81S81PTcaCca250250AY.40.000389
ORF7a81S81PTcaCca246246B.1.5230.602941
ORF7a81S81delTCA---229229B.1.617.20.000862
ORF7a81S81delTCA---216216AY.1030.001341
ORF7a81S81delTCA---179179AY.390.004423
ORF7a81S81delTCA---179179B.1.177.210.013688
ORF7a81S81LtCatTa156156AY.30.001552
ORF7a81S81delTCA---155155AY.430.000687
ORF7a81S81PTcaCca155155B.1.1.70.000139
ORF7a81S81delTCA---146146AY.440.000889
ORF7a81S81del1Tca-ca93139All0.000018
ORF7a81S81del1tcAtc-42139All0.000008
ORF7a81S81del1TCA-NN4139All0.000001
ORF7a81S81TTcaAca133135All0.000025
ORF7a81S81TTcAAcT1135All0
ORF7a81S81TTcAAcC1135All0
ORF7a81S81ATcaGca125126All0.000024
ORF7a81S81ATcAGcT1126All0
ORF7a81S81delTCA---114114AY.1000.005245
ORF7a81S81delTCA---113113AY.290.001782
ORF7a81S81delTCA---113113AY.30.001124
ORF7a81S81delTCA---9494AY.260.002661
ORF7a81S81LtCatTa9393AY.440.000566
ORF7a81S81LtCatTa9393AY.870.077435
ORF7a81S81PTcaCca9090AY.30.000895
ORF7a81S81XtCatAa5687All0.000011
ORF7a81S81XtCatGa2987All0.000006
ORF7a81S81XtCAtAG287All0
ORF7a81S81delTCA---8484AY.250.000505
ORF7a81S81LtCatTa8080AY.430.000354
ORF7a81S81delTCA---7676AY.420.003057
ORF7a81S81LtCatTa7575AY.1030.000466
ORF7a81S81delTCA---7373AY.980.005767
ORF7a81S81del1Tca-ca5969AY.40.000092
ORF7a81S81del1tcAtc-969AY.40.000014
ORF7a81S81del1TCA-NN169AY.40.000002
ORF7a81S81StcAtcT3159AY.40.000048
ORF7a81S81StcAtcG2659AY.40.00004
ORF7a81S81StcAtcC259AY.40.000003
ORF7a81S81delTCA---5858AY.1200.002156
ORF7a81S81LtCatTa5858AY.250.000349
ORF7a81S81PTcaCca5455AY.440.000329
ORF7a81S81PTcACcT155AY.440.000006
ORF7a81S81delTCA---5555B.1.1770.000724
ORF7a81S81delTCA---5555B.1.20.000484
ORF7a81S81delTCA---5454B.1.5260.001269
ORF7a81S81PTcaCca5151B.1.617.20.000192
ORF7a81S81del2TCa--a3144All0.000006
ORF7a81S81del2TCA--N844All0.000002
ORF7a81S81del2tCAt--544All0.000001
ORF7a81S81delTCA---4444B.1.6210.003895
ORF7a81S81delTCA---4141B.1.1.2840.004403
ORF7a81S81LtCatTa3939AY.200.001516
ORF7a81S81delTCA---3838B.10.000348
ORF7a81S81PTcaCca3737AY.1200.001376
ORF7a81S81LtCatTa3537B.1.1770.000461
ORF7a81S81LtCAtTG237B.1.1770.000026
ORF7a81S81StcAtcG3636AY.250.000217
ORF7a81S81StcAtcG2135B.1.617.20.000079
ORF7a81S81StcAtcT935B.1.617.20.000034
ORF7a81S81StcAtcC535B.1.617.20.000019
ORF7a81S81delTCA---3535P.10.000551
ORF7a81S81StcAtcG3434AY.1080.037486
ORF7a81S81delTCA---3434AY.3.10.002899
ORF7a81S81LtCatTa3232AY.340.003103
ORF7a81S81delTCA---3232AY.46.60.002311
ORF7a81S81PTcaCca3131AY.1190.001095
ORF7a81S81LtCatTa3131B.10.000284
ORF7a81S81LtCatTa3131B.1.20.000273
ORF7a81S81LtCatTa3131R.10.00279
ORF7a81S81delTCA---3030AY.1190.001059
ORF7a81S81GTCaGGa2829All0.000005
ORF7a81S81GTCAGGG129All0
ORF7a81S81delTCA---2828AY.360.00415
ORF7a81S81LtCatTa2828B.1.2340.003694
ORF7a81S81delTCA---2727AY.470.00084
ORF7a81S81LtCatTa2727P.10.000425
ORF7a81S81delTCA---2626AY.200.00101
ORF7a81S81delTCA---2626AY.7.20.014541
ORF7a81S81delTCA---2626B.1.1.2140.001442
ORF7a81S81StcAtcG1626B.1.1.70.000014
ORF7a81S81StcAtcT1026B.1.1.70.000009
ORF7a81S81delTCA---2525AY.50.000516
ORF7a81S81TTcaAca2425B.1.1.70.000021
ORF7a81S81TTcAAcT125B.1.1.70.000001
ORF7a81S81StcAtcT2525B.1.177.510.114155
ORF7a81S81LtCatTa2525B.1.4290.000588
ORF7a81S81PTcaCca2525B.1.6210.002213
ORF7a81S81delTCA---2424AY.60.000987
ORF7a81S81GTCaGGa2324B.1.177.210.001759
ORF7a81S81GTCAGGG124B.1.177.210.000076
ORF7a81S81PTcaCca2323B.10.000211
ORF7a81S81LtCatTa2323B.1.5170.009821
ORF7a81S81delTCA---2222B.1.6370.001608
ORF7a81S81ATcaGca2121B.1.1.70.000019
ORF7a81S81LtCatTa2020AY.23.10.008347
ORF7a81S81delTCA---2020B.1.3510.000595
ORF7a81S81LtCatTa2020B.1.3510.000595
ORF7a81S81delTCA---1919AY.46.40.003126
ORF7a81S81LtCatTa1919AY.50.000392
ORF7a81S81ATcaGca1919AY.850.008116
ORF7a81S81TTcaAca1919B.1.20.000167
ORF7a81S81delTCA---1818AY.750.001008
ORF7a81S81PTcaCca1818B.1.20.000158
ORF7a81S81ATcaGca1818B.1.617.20.000068
ORF7a81S81delTCA---1717B.1.1600.00053
ORF7a81S81delTCA---1717B.1.4290.0004
ORF7a81S81LtCatTa1616AY.330.001068
ORF7a81S81PTcaCca1515AY.250.00009
ORF7a81S81delTCA---1515AY.300.005936
ORF7a81S81TTcaAca1515AY.850.006408
ORF7a81S81delTCA---1515AY.98.10.000726
ORF7a81S81XtCatAa815B.1.1.70.000007
ORF7a81S81XtCatGa715B.1.1.70.000006
ORF7a81S81delTCA---1515B.1.5250.001697
ORF7a81S81delTCA---1515C.370.001741
ORF7a81S81PTcaCca1515P.10.000236
ORF7a81S81del1tcAtc-1214AY.1030.000075
ORF7a81S81del1Tca-ca214AY.1030.000012
ORF7a81S81delTCA---1414AY.1170.001183
ORF7a81S81del1Tca-ca1314AY.1200.000483
ORF7a81S81del1tcAtc-114AY.1200.000037
ORF7a81S81delTCA---1414B.1.10.000254
ORF7a81S81delTCA---1414B.1.1.2580.045603
ORF7a81S81LtCatTa1414B.1.5340.175
ORF7a81S81XtCatGa1113AY.440.000067
ORF7a81S81XtCatAa213AY.440.000012
ORF7a81S81delTCA---1212AY.1160.003441
ORF7a81S81delTCA---1212AY.230.000837
ORF7a81S81TTcaAca1212AY.30.000119
ORF7a81S81PTcaCca1212AY.340.001164
ORF7a81S81delTCA---1212AY.710.005701
ORF7a81S81delTCA---1212B.1.3240.019262
ORF7a81S81LtCatTa1212B.1.4270.000606
ORF7a81S81LtCatTa1212Q.80.001979
ORF7a81S81delTCA---1212R.10.00108
ORF7a81S81ATcaGca1111AY.1020.000292
ORF7a81S81PTcaCca1111AY.1030.000068
ORF7a81S81delTCA---1111AY.1100.00124
ORF7a81S81delTCA---1111AY.1210.001488
ORF7a81S81LtCatTa1111AY.130.001771
ORF7a81S81PTcaCca1111AY.230.000767
ORF7a81S81LtCatTa1111AY.290.000174
ORF7a81S81TTcaAca1111AY.440.000067
ORF7a81S81delTCA---1111AY.90.000744
ORF7a81S81LtCatTa1111B.1.10.0002
ORF7a81S81del2TCa--a611B.1.1.70.000005
ORF7a81S81del2TCA--N511B.1.1.70.000004
ORF7a81S81delTCA---1111B.1.5960.000959
ORF7a81S81delTCA---1111N.70.323529
ORF7a81S81delTCA---1010AY.1180.000626
ORF7a81S81delTCA---1010AY.39.10.000396
ORF7a81S81XtCatAa1010AY.40.000016
ORF7a81S81LtCatTa1010AY.4.20.000217
ORF7a81S81StcAtcT710B.1.1770.000092
ORF7a81S81StcAtcC310B.1.1770.00004
ORF7a81S81LtCatTa1010B.1.177.810.001893
ORF7a81S81LtCatTa1010B.1.2430.000696
ORF7a81S81delTCA---1010B.1.4270.000505
ORF7a81S81LtCatTa1010B.1.6210.000885
ORF7a81S81delTCA---1010Q.80.001649
ORF7a81S81LtCatTa99AY.1000.000414
ORF7a81S81LtCatTa99AY.1020.000239
ORF7a81S81StcAtcT99AY.4.20.000195
ORF7a81S81PTcaCca99AY.4.20.000195
ORF7a81S81LtCatTa99AY.4.50.000967
ORF7a81S81PTcaCca99AY.430.00004
ORF7a81S81LtCatTa99AY.690.00168
ORF7a81S81LtCatTa99AY.980.000711
ORF7a81S81delTCA---99AY.99.20.000829
ORF7a81S81delTCA---99B.1.1.5190.000357
ORF7a81S81LtCatTa99B.1.1600.000281
ORF7a81S81LtCatTa99B.1.160.80.011598
ORF7a81S81XtCatAa99B.1.1770.000119
ORF7a81S81PTcaCca99B.1.36.170.004447
ORF7a81S81TTcaAca99B.1.617.20.000034
ORF7a81S81delTCA---99L.10.017143
ORF7a81S81KTCaAAa88All0.000002
ORF7a81S81XtCatGa88AY.1030.00005
ORF7a81S81delTCA---88AY.1130.001139
ORF7a81S81LtCatTa88AY.1170.000676
ORF7a81S81LtCatTa88AY.1190.000282
ORF7a81S81LtCatTa88AY.1200.000297
ORF7a81S81delTCA---88AY.120.10.002568
ORF7a81S81LtCatTa88AY.1210.001083
ORF7a81S81StcAtcT78AY.290.00011
ORF7a81S81StcAtcC18AY.290.000016
ORF7a81S81ATcaGca88AY.300.003166
ORF7a81S81ATcaGca88AY.350.001864
ORF7a81S81delTCA---88AY.70.001568
ORF7a81S81StcAtcG88AY.900.005476
ORF7a81S81delTCA---88B.1.1.2310.024768
ORF7a81S81KTCaAAa88B.1.1.70.000007
ORF7a81S81delTCA---88B.1.160.310.064516
ORF7a81S81LtCatTa88B.1.5260.000188
ORF7a81S81RTCaAGa77All0.000001
ORF7a81S81StcAtcG57AY.1000.00023
ORF7a81S81StcAtcT17AY.1000.000046
ORF7a81S81StcAtcC17AY.1000.000046
ORF7a81S81StcAtcG47AY.1030.000025
ORF7a81S81StcAtcC37AY.1030.000019
ORF7a81S81delTCA---77AY.29.10.001544
ORF7a81S81delTCA---77AY.340.000679
ORF7a81S81delTCA---77AY.350.001631
ORF7a81S81ATcaGca77AY.40.000011
ORF7a81S81LtCatTa77AY.400.00675
ORF7a81S81delTCA---77AY.450.000852
ORF7a81S81del1Tca-ca77AY.50.000145
ORF7a81S81delTCA---77AY.540.000667
ORF7a81S81LtCatTa77AY.610.000733
ORF7a81S81delTCA---77AY.9.20.000257
ORF7a81S81PTcaCca77B0.000895
ORF7a81S81LtCatTa77B.1.1.2240.1
ORF7a81S81del2TCa--a77B.1.1770.000092
ORF7a81S81PTcaCca66AY.1020.000159
ORF7a81S81TTcaAca66AY.1030.000037
ORF7a81S81delTCA---66AY.330.000401
ORF7a81S81del2TCa--a66AY.40.000009
ORF7a81S81PTcaCca66AY.470.000187
ORF7a81S81LtCatTa66AY.5.30.002024
ORF7a81S81LtCatTa66AY.840.002625
ORF7a81S81LtCatTa66AY.920.001724
ORF7a81S81LtCatTa66AY.98.10.000291
ORF7a81S81StcAtcT56AY.98.10.000242
ORF7a81S81StcAtcG16AY.98.10.000048
ORF7a81S81RTCaAGa66B.1.177.210.000459
ORF7a81S81PTcaCca66C.370.000696
ORF7a81S81delTCA---66P.1.150.001394
ORF7a81S81ITCaATa45All0.000001
ORF7a81S81ITCAATC15All0
ORF7a81S81delTCA---55AY.1060.001674
ORF7a81S81delTCA---55AY.1140.001156
ORF7a81S81LtCatTa55AY.120.00158
ORF7a81S81LtCatTa55AY.270.000324
ORF7a81S81XtCatAa55AY.430.000022
ORF7a81S81del2TCa--a55AY.440.00003
ORF7a81S81StcAtcT35AY.440.000018
ORF7a81S81StcAtcG15AY.440.000006
ORF7a81S81StcAtcC15AY.440.000006
ORF7a81S81LtCatTa55AY.450.000608
ORF7a81S81LtCatTa55AY.470.000156
ORF7a81S81delTCA---55AY.610.000524
ORF7a81S81LtCatTa55AY.7.10.000564
ORF7a81S81StcAtcG45AY.740.000463
ORF7a81S81StcAtcT15AY.740.000116
ORF7a81S81delTCA---55AY.800.005643
ORF7a81S81LtCatTa55B.1.1.2840.000537
ORF7a81S81delTCA---55B.1.2430.000348
ORF7a81S81LtCatTa55B.1.2580.000333
ORF7a81S81delTCA---55B.1.3750.004098
ORF7a81S81delTCA---55B.1.700.121951
ORF7a81S81PTcaCca55Q.30.000725
ORF7a81S81delTCA---44A0.001548
ORF7a81S81LtCatTa44A.270.006623
ORF7a81S81delTCA---44AY.1020.000106
ORF7a81S81StcAtcT34AY.1020.00008
ORF7a81S81StcAtcC14AY.1020.000027
ORF7a81S81del2TCa--a34AY.1030.000019
ORF7a81S81del2tCAt--14AY.1030.000006
ORF7a81S81PTcaCca44AY.1060.00134
ORF7a81S81PTcaCca44AY.1130.00057
ORF7a81S81LtCatTa44AY.1130.00057
ORF7a81S81StcAtcG34AY.1130.000427
ORF7a81S81StcAtcT14AY.1130.000142
ORF7a81S81LtCatTa44AY.116.10.001246
ORF7a81S81XtCatAa44AY.1180.000251
ORF7a81S81delTCA---44AY.140.000352
ORF7a81S81LtCatTa44AY.260.000113
ORF7a81S81TTcaAca44AY.300.001583
ORF7a81S81TTcaAca44AY.390.000099
ORF7a81S81del1Tca-ca34AY.390.000074
ORF7a81S81del1tcAtc-14AY.390.000025
ORF7a81S81TTcaAca44AY.40.000006
ORF7a81S81delTCA---44AY.4.50.00043
ORF7a81S81LtCatTa44AY.420.000161
ORF7a81S81del1tcAtc-44AY.440.000024
ORF7a81S81LtCatTa44AY.46.20.002541
ORF7a81S81delTCA---44AY.680.001095
ORF7a81S81LtCatTa44AY.680.001095
ORF7a81S81del1tcAtc-44AY.750.000224
ORF7a81S81LtCatTa44AY.9.20.000147
ORF7a81S81LtCatTa44AY.99.20.000369
ORF7a81S81XtCatAa34B.10.000027
ORF7a81S81XtCatGa14B.10.000009
ORF7a81S81delTCA---44B.1.1.250.002274
ORF7a81S81StcAtcG34B.1.20.000026
ORF7a81S81StcAtcT14B.1.20.000009
ORF7a81S81delTCA---44B.1.2340.000528
ORF7a81S81StcAtcT44B.1.258.140.003922
ORF7a81S81PTcaCca44B.1.4480.010499
ORF7a81S81PTcaCca44B.1.5170.001708
ORF7a81S81LtCatTa44B.1.5250.000453
ORF7a81S81PTcaCca44B.1.5260.000094
ORF7a81S81PTcaCca44B.1.5750.001214
ORF7a81S81delTCA---44Q.10.000505
ORF7a81S81QTCaCAa33All0.000001
ORF7a81S81TTcaAca23AY.1000.000092
ORF7a81S81TTcAAcC13AY.1000.000046
ORF7a81S81delTCA---33AY.130.000483
ORF7a81S81PTcaCca33AY.200.000117
ORF7a81S81LtCatTa33AY.230.000209
ORF7a81S81delTCA---33AY.240.001293
ORF7a81S81TTcaAca33AY.250.000018
ORF7a81S81LtCatTa33AY.29.10.000662
ORF7a81S81LtCatTa33AY.34.10.00153
ORF7a81S81PTcaCca33AY.360.000445
ORF7a81S81delTCA---33AY.370.000948
ORF7a81S81PTcaCca33AY.390.000074
ORF7a81S81LtCatTa33AY.390.000074
ORF7a81S81delTCA---33AY.530.000863
ORF7a81S81LtCatTa33AY.540.000286
ORF7a81S81ATcaGca23AY.590.001059
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