CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 79 | A79A | syn | gcC | gcT | 7972 | 6849 | 0.859132 | 27628-27630 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 79 | A79A | gcC | gcT | 6849 | 7972 | All | 0.00131 |
ORF7a | 79 | A79A | gcC | gcT | 1710 | 1877 | B.1.1.7 | 0.001531 |
ORF7a | 79 | A79A | gcC | gcT | 720 | 781 | AY.4 | 0.001121 |
ORF7a | 79 | A79A | gcC | gcT | 562 | 562 | B.1.1.486 | 0.886435 |
ORF7a | 79 | A79A | gcC | gcT | 226 | 441 | B.1.526 | 0.005312 |
ORF7a | 79 | A79A | gcC | gcT | 194 | 366 | B.1.2 | 0.001708 |
ORF7a | 79 | A79A | gcC | gcT | 347 | 348 | B.1.1.214 | 0.019244 |
ORF7a | 79 | A79A | gcC | gcT | 261 | 307 | B.1.617.2 | 0.000983 |
ORF7a | 79 | A79A | gcC | gcT | 239 | 263 | B.1.429 | 0.005623 |
ORF7a | 79 | A79A | gcC | gcT | 198 | 203 | AY.43 | 0.000877 |
ORF7a | 79 | A79A | gcC | gcT | 123 | 179 | AY.103 | 0.000764 |
ORF7a | 79 | A79A | gcC | gcT | 123 | 128 | AY.3 | 0.001223 |
ORF7a | 79 | A79A | gcC | gcT | 111 | 114 | AY.47 | 0.003453 |
ORF7a | 79 | A79A | gcC | gcT | 101 | 108 | B.1 | 0.000925 |
ORF7a | 79 | A79A | gcC | gcT | 98 | 101 | B.1.243 | 0.006819 |
ORF7a | 79 | A79A | gcC | gcT | 79 | 91 | B.1.1 | 0.001433 |
ORF7a | 79 | A79A | gcC | gcT | 75 | 90 | P.1 | 0.001182 |
ORF7a | 79 | A79A | gcC | gcT | 72 | 85 | AY.39 | 0.001779 |
ORF7a | 79 | A79A | gcC | gcT | 82 | 82 | A.2.5 | 0.040918 |
ORF7a | 79 | A79A | gcC | gcT | 10 | 66 | P.1.14 | 0.000478 |
ORF7a | 79 | A79A | gcC | gcT | 42 | 65 | AY.25 | 0.000253 |
ORF7a | 79 | A79A | gcC | gcT | 65 | 65 | P.2 | 0.012131 |
ORF7a | 79 | A79A | gcC | gcT | 10 | 61 | AY.44 | 0.000061 |
ORF7a | 79 | A79A | gcC | gcT | 56 | 58 | AY.102 | 0.001485 |
ORF7a | 79 | A79A | gcC | gcT | 13 | 51 | AY.100 | 0.000598 |
ORF7a | 79 | A79A | gcC | gcT | 46 | 50 | B.1.351 | 0.001367 |
ORF7a | 79 | A79A | gcC | gcT | 38 | 40 | B.1.177 | 0.0005 |
ORF7a | 79 | A79A | gcC | gcT | 36 | 36 | B.1.558 | 0.164384 |
ORF7a | 79 | A79A | gcC | gcT | 35 | 35 | B.1.371 | 0.039282 |
ORF7a | 79 | A79A | gcC | gcT | 22 | 33 | AY.26 | 0.000623 |
ORF7a | 79 | A79A | gcC | gcT | 28 | 32 | B.1.160 | 0.000873 |
ORF7a | 79 | A79A | gcC | gcT | 30 | 30 | B.1.609 | 0.014382 |
ORF7a | 79 | A79A | gcC | gcT | 22 | 27 | AY.4.2 | 0.000477 |
ORF7a | 79 | A79A | gcC | gcT | 27 | 27 | B.1.1.434 | 0.009411 |
ORF7a | 79 | A79A | gcC | gcT | 21 | 24 | AY.118 | 0.001316 |
ORF7a | 79 | A79A | gcC | gcT | 22 | 24 | B.1.595 | 0.005741 |
ORF7a | 79 | A79A | gcC | gcT | 23 | 23 | B.1.1.275 | 0.258427 |
ORF7a | 79 | A79A | gcC | gcT | 23 | 23 | B.1.637 | 0.001681 |
ORF7a | 79 | A79A | gcC | gcT | 22 | 22 | P.1.15 | 0.005112 |
ORF7a | 79 | A79A | gcC | gcT | 18 | 21 | AY.68 | 0.004927 |
ORF7a | 79 | A79A | gcC | gcT | 17 | 21 | B.1.1.519 | 0.000675 |
ORF7a | 79 | A79A | gcC | gcT | 20 | 20 | AY.75 | 0.00112 |
ORF7a | 79 | A79A | gcC | gcT | 19 | 19 | B.1.177.75 | 0.019771 |
ORF7a | 79 | A79A | gcC | gcT | 19 | 19 | B.1.241 | 0.015422 |
ORF7a | 79 | A79A | gcC | gcT | 19 | 19 | B.1.427 | 0.000959 |
ORF7a | 79 | A79A | gcC | gcT | 15 | 17 | AY.20 | 0.000583 |
ORF7a | 79 | A79A | gcC | gcT | 17 | 17 | AY.67 | 0.007892 |
ORF7a | 79 | A79A | gcC | gcT | 17 | 17 | B.1.1.141 | 0.034205 |
ORF7a | 79 | A79A | gcC | gcT | 12 | 17 | B.1.258 | 0.000799 |
ORF7a | 79 | A79A | gcC | gcT | 13 | 16 | B.1.36 | 0.001897 |
ORF7a | 79 | A79A | gcC | gcT | 16 | 16 | B.1.369 | 0.004564 |
ORF7a | 79 | A79A | gcC | gcT | 14 | 15 | AY.119 | 0.000494 |
ORF7a | 79 | A79A | gcC | gcT | 13 | 14 | AY.29 | 0.000205 |
ORF7a | 79 | A79A | gcC | gcT | 14 | 14 | B.1.1.192 | 0.032333 |
ORF7a | 79 | A79A | gcC | gcT | 10 | 14 | B.1.1.33 | 0.004209 |
ORF7a | 79 | A79A | gcC | gcT | 12 | 13 | AY.5 | 0.000248 |
ORF7a | 79 | A79A | gcC | gcT | 6 | 12 | AY.120 | 0.000223 |
ORF7a | 79 | A79A | gcC | gcT | 12 | 12 | AY.4.2.1 | 0.001788 |
ORF7a | 79 | A79A | gcC | gcT | 8 | 12 | AY.42 | 0.000322 |
ORF7a | 79 | A79A | gcC | gcT | 12 | 12 | B.1.1.39 | 0.006116 |
ORF7a | 79 | A79A | gcC | gcT | 12 | 12 | B.1.1.70 | 0.004093 |
ORF7a | 79 | A79A | gcC | gcT | 11 | 11 | B.1.541 | 0.048673 |
ORF7a | 79 | A79A | gcC | gcT | 5 | 10 | AY.33 | 0.000334 |
ORF7a | 79 | A79A | gcC | gcT | 8 | 10 | AY.54 | 0.000763 |
ORF7a | 79 | A79A | gcC | gcT | 10 | 10 | AY.98 | 0.00079 |
ORF7a | 79 | A79A | gcC | gcT | 10 | 10 | B.1.1.348 | 0.007962 |
ORF7a | 79 | A79A | gcC | gcT | 7 | 10 | C.37 | 0.000812 |
ORF7a | 79 | A79A | gcC | gcT | 8 | 9 | AY.4.5 | 0.00086 |
ORF7a | 79 | A79A | gcC | gcT | 8 | 9 | AY.46.6 | 0.000578 |
ORF7a | 79 | A79A | gcC | gcT | 9 | 9 | AY.69 | 0.00168 |
ORF7a | 79 | A79A | gcC | gcT | 7 | 9 | AY.9.2 | 0.000257 |
ORF7a | 79 | A79A | gcC | gcT | 9 | 9 | B.1.1.402 | 0.1 |
ORF7a | 79 | A79A | gcC | gcT | 9 | 9 | B.1.1.50 | 0.00611 |
ORF7a | 79 | A79A | gcC | gcT | 9 | 9 | B.1.239 | 0.010989 |
ORF7a | 79 | A79A | gcC | gcT | 9 | 9 | B.1.551 | 0.011613 |
ORF7a | 79 | A79A | gcC | gcT | 8 | 9 | B.1.596 | 0.000697 |
ORF7a | 79 | A79A | gcC | gcT | 7 | 8 | AY.3.1 | 0.000597 |
ORF7a | 79 | A79A | gcC | gcT | 8 | 8 | AY.34 | 0.000776 |
ORF7a | 79 | A79A | gcC | gcT | 8 | 8 | AY.61 | 0.000838 |
ORF7a | 79 | A79A | gcC | gcT | 8 | 8 | B.1.1.311 | 0.002865 |
ORF7a | 79 | A79A | gcC | gcT | 8 | 8 | B.1.396 | 0.005646 |
ORF7a | 79 | A79A | gcC | gcT | 8 | 8 | B.1.561 | 0.003176 |
ORF7a | 79 | A79A | gcC | gcT | 4 | 8 | B.1.621 | 0.000354 |
ORF7a | 79 | A79A | gcC | gcT | 7 | 7 | AY.121 | 0.000947 |
ORF7a | 79 | A79A | gcC | gcT | 7 | 7 | AY.14 | 0.000616 |
ORF7a | 79 | A79A | gcC | gcT | 7 | 7 | AY.46 | 0.000729 |
ORF7a | 79 | A79A | gcC | gcT | 7 | 7 | AY.5.3 | 0.002362 |
ORF7a | 79 | A79A | gcC | gcT | 7 | 7 | B.1.1.222 | 0.001428 |
ORF7a | 79 | A79A | gcC | gcT | 7 | 7 | B.1.1.224 | 0.1 |
ORF7a | 79 | A79A | gcC | gcT | 7 | 7 | B.1.1.284 | 0.000752 |
ORF7a | 79 | A79A | gcC | gcT | 6 | 7 | B.1.177.82 | 0.002864 |
ORF7a | 79 | A79A | gcC | gcT | 6 | 6 | AY.23 | 0.000418 |
ORF7a | 79 | A79A | gcC | gcT | 6 | 6 | AY.39.1 | 0.000238 |
ORF7a | 79 | A79A | gcC | gcT | 5 | 6 | B.1.1.28 | 0.001556 |
ORF7a | 79 | A79A | gcC | gcT | 6 | 6 | B.1.499 | 0.006303 |
ORF7a | 79 | A79A | gcC | gcT | 6 | 6 | B.1.562 | 0.111111 |
ORF7a | 79 | A79A | gcC | gcT | 6 | 6 | C.36 | 0.005464 |
ORF7a | 79 | A79A | gcC | gcT | 5 | 6 | P.1.7 | 0.001596 |
ORF7a | 79 | A79A | gcC | gcT | 5 | 5 | B.1.1.25 | 0.002843 |
ORF7a | 79 | A79A | gcC | gcT | 5 | 5 | B.1.1.294 | 0.006329 |
ORF7a | 79 | A79A | gcC | gcT | 5 | 5 | B.1.1.316 | 0.004625 |
ORF7a | 79 | A79A | gcC | gcT | 5 | 5 | B.1.1.38 | 0.294118 |
ORF7a | 79 | A79A | gcC | gcT | 5 | 5 | B.1.177.10 | 0.00439 |
ORF7a | 79 | A79A | gcC | gcT | 5 | 5 | B.1.177.12 | 0.000758 |
ORF7a | 79 | A79A | gcC | gcT | 4 | 5 | B.1.221 | 0.000284 |
ORF7a | 79 | A79A | gcC | gcT | 5 | 5 | B.1.346 | 0.006553 |
ORF7a | 79 | A79A | gcC | gcT | 3 | 5 | B.1.525 | 0.000339 |
ORF7a | 79 | A79A | gcC | gcT | 5 | 5 | C.16 | 0.005302 |
ORF7a | 79 | A79A | gcC | gcT | 5 | 5 | C.36.3 | 0.002836 |
ORF7a | 79 | A79A | gcC | gcT | 5 | 5 | Q.4 | 0.002274 |
ORF7a | 79 | A79A | gcC | gcT | 3 | 4 | AY.113 | 0.000427 |
ORF7a | 79 | A79A | gcC | gcT | 4 | 4 | AY.29.1 | 0.000882 |
ORF7a | 79 | A79A | gcC | gcT | 3 | 4 | AY.45 | 0.000365 |
ORF7a | 79 | A79A | gcC | gcT | 4 | 4 | AY.62 | 0.001743 |
ORF7a | 79 | A79A | gcC | gcT | 4 | 4 | AY.66 | 0.004278 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 4 | AY.75.1 | 0.000361 |
ORF7a | 79 | A79A | gcC | gcT | 4 | 4 | AY.99.2 | 0.000369 |
ORF7a | 79 | A79A | gcC | gcT | 4 | 4 | B.1.1.412 | 0.030534 |
ORF7a | 79 | A79A | gcC | gcT | 4 | 4 | B.1.1.58 | 0.021505 |
ORF7a | 79 | A79A | gcC | gcT | 4 | 4 | B.1.177.7 | 0.000659 |
ORF7a | 79 | A79A | gcC | gcT | 4 | 4 | B.1.177.73 | 0.002265 |
ORF7a | 79 | A79A | gcC | gcT | 4 | 4 | B.1.177.81 | 0.000757 |
ORF7a | 79 | A79A | gcC | gcT | 4 | 4 | B.1.177.86 | 0.000734 |
ORF7a | 79 | A79A | gcC | gcT | 4 | 4 | B.1.351.2 | 0.00121 |
ORF7a | 79 | A79A | gcC | gcT | 3 | 4 | B.1.351.3 | 0.002629 |
ORF7a | 79 | A79A | gcC | gcT | 4 | 4 | B.1.36.29 | 0.002069 |
ORF7a | 79 | A79A | gcC | gcT | 4 | 4 | B.1.617.1 | 0.000516 |
ORF7a | 79 | A79A | gcC | gcT | 4 | 4 | Q.2 | 0.002454 |
ORF7a | 79 | A79A | gcC | gcT | 4 | 4 | Q.3 | 0.00058 |
ORF7a | 79 | A79A | gcC | gcT | 3 | 3 | AY.116 | 0.00086 |
ORF7a | 79 | A79A | gcC | gcT | 3 | 3 | AY.24 | 0.001293 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 3 | AY.27 | 0.000129 |
ORF7a | 79 | A79A | gcC | gcT | 3 | 3 | AY.64 | 0.001786 |
ORF7a | 79 | A79A | gcC | gcT | 3 | 3 | AY.85 | 0.001282 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 3 | AY.9 | 0.000135 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 3 | AY.98.1 | 0.000097 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 3 | B | 0.000256 |
ORF7a | 79 | A79A | gcC | gcT | 3 | 3 | B.1.1.135 | 0.014085 |
ORF7a | 79 | A79A | gcC | gcT | 3 | 3 | B.1.1.416 | 0.002715 |
ORF7a | 79 | A79A | gcC | gcT | 3 | 3 | B.1.160.30 | 0.008929 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 3 | B.1.177.21 | 0.000153 |
ORF7a | 79 | A79A | gcC | gcT | 3 | 3 | B.1.177.60 | 0.000655 |
ORF7a | 79 | A79A | gcC | gcT | 3 | 3 | B.1.177.87 | 0.002183 |
ORF7a | 79 | A79A | gcC | gcT | 3 | 3 | B.1.36.18 | 0.001261 |
ORF7a | 79 | A79A | gcC | gcT | 3 | 3 | B.1.367 | 0.002377 |
ORF7a | 79 | A79A | gcC | gcT | 3 | 3 | B.1.438.1 | 0.000322 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 3 | B.1.576 | 0.000907 |
ORF7a | 79 | A79A | gcC | gcT | 3 | 3 | B.1.581 | 0.028302 |
ORF7a | 79 | A79A | gcC | gcT | 3 | 3 | C.35 | 0.002322 |
ORF7a | 79 | A79A | gcC | gcT | 3 | 3 | Q.6 | 0.019868 |
ORF7a | 79 | A79A | gcC | gcT | 3 | 3 | Q.8 | 0.000495 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 3 | R.1 | 0.00018 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | A.23.1 | 0.001408 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | AD.2 | 0.000438 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | AY.10 | 0.00106 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | AY.106 | 0.00067 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | AY.116.1 | 0.000623 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | AY.23.1 | 0.000835 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | AY.32 | 0.001065 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | AY.46.2 | 0.001271 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | AY.63 | 0.000774 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 2 | AY.77 | 0.001127 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | AY.87 | 0.001665 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | B.1.1.10 | 0.00223 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | B.1.1.253 | 0.005013 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | B.1.1.269 | 0.002706 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | B.1.1.389 | 0.012121 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | B.1.1.407 | 0.083333 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | B.1.1.464 | 0.002946 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | B.1.1.72 | 0.060606 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | B.1.177.23 | 0.006472 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | B.1.177.4 | 0.000422 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | B.1.177.55 | 0.004662 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | B.1.177.57 | 0.000562 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 2 | B.1.206 | 0.000816 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | B.1.258.11 | 0.000793 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | B.1.258.14 | 0.001961 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | B.1.258.17 | 0.000208 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | B.1.320 | 0.002491 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | B.1.336 | 0.004878 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | B.1.349 | 0.00143 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | B.1.36.38 | 0.003284 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | B.1.416.1 | 0.003125 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | B.1.466.2 | 0.000782 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | B.1.517 | 0.000854 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | B.1.564 | 0.000852 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 2 | D.2 | 0.000075 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | P.1.12 | 0.000968 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | P.1.17 | 0.000324 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | P.1.9 | 0.009615 |
ORF7a | 79 | A79A | gcC | gcT | 2 | 2 | Q.1 | 0.000253 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | A | 0.000387 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | A.19 | 0.009434 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | A.2 | 0.000662 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | A.28 | 0.002646 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | AP.1 | 0.001502 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | AY.101 | 0.00049 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | AY.104 | 0.001984 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | AY.107 | 0.000466 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | AY.109 | 0.00074 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | AY.110 | 0.000113 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | AY.13 | 0.000161 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | AY.16 | 0.00038 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | AY.30 | 0.000396 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | AY.36 | 0.000148 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | AY.37 | 0.000316 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | AY.38 | 0.000499 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | AY.46.4 | 0.000165 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | AY.5.1 | 0.003759 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | AY.5.4 | 0.000277 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | AY.53 | 0.000288 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | AY.6 | 0.000041 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | AY.65 | 0.000533 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | AY.78 | 0.001541 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | AY.79 | 0.001211 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | AY.86 | 0.00083 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | AY.9.1 | 0.000084 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | AY.91 | 0.00073 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | AY.94 | 0.000443 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | AZ.1 | 0.000867 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.1.196 | 0.005714 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.1.219 | 0.005 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.1.258 | 0.003257 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.1.272 | 0.005208 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.1.302 | 0.002075 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.1.309 | 0.005848 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.1.315 | 0.008475 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.1.344 | 0.010753 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.1.404 | 0.015873 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.1.525 | 0.005464 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.1.54 | 0.003021 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.177.20 | 0.001517 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.177.5 | 0.001242 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.177.62 | 0.001192 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.177.77 | 0.000726 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.221.2 | 0.004016 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.23 | 0.006061 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.236 | 0.002053 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.3 | 0.002618 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.311 | 0.000275 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.333 | 0.010526 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.36.24 | 0.006173 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.362 | 0.001541 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.380 | 0.006623 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.395 | 0.007042 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.400 | 0.000429 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.409 | 0.000781 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.422 | 0.000812 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.446 | 0.02 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.456 | 0.003268 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.498 | 0.020408 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.509 | 0.000866 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.524 | 0.001406 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.540 | 0.009709 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.560 | 0.00463 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.580 | 0.004065 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.585 | 0.027778 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.588 | 0.00091 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.598 | 0.016949 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.1.93 | 0.000934 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.40 | 0.000364 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | B.6 | 0.00091 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | C.1 | 0.002392 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | C.1.2 | 0.004255 |
ORF7a | 79 | A79A | gcC | gcT | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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