CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 79 & Codon = gc-

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF7a	79	A79del1		del	gcC	gc-	1716	17	0.00990676	27628-27630

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF7a	79	A79del1	gcC	gc-	17	1716	All	0.000003
ORF7a	79	A79del1	gcC	gc-	1	96	AY.43	0.000004
ORF7a	79	A79del1	gcC	gc-	7	72	AY.39	0.000173
ORF7a	79	A79del1	gcC	gc-	3	37	AY.4	0.000005
ORF7a	79	A79del1	gcC	gc-	1	33	AY.103	0.000006
ORF7a	79	A79del1	gcC	gc-	1	11	B.1.1.7	0.000001
ORF7a	79	A79del1	gcC	gc-	1	8	AY.42	0.00004
ORF7a	79	A79del1	gcC	gc-	1	3	AY.25	0.000006
ORF7a	79	A79del1	gcC	gc-	1	3	AY.99.2	0.000092
ORF7a	79	A79del1	gcC	gc-	1	2	C.37	0.000116

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.