CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 79 & Codon = --c

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a79A79del2delGCc--c148920.62162227628-27630

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a79A79del2GCc--c92148All0.000018
ORF7a79A79del2GCc--c5193B.1.1.70.000046
ORF7a79A79del2GCc--c1111B.1.1770.000145
ORF7a79A79del2GCc--c44AY.3.10.000341
ORF7a79A79del2GCc--c34AY.40.000005
ORF7a79A79del2GCc--c44B.1.3510.000119
ORF7a79A79del2GCc--c22AY.200.000078
ORF7a79A79del2GCc--c22AY.460.000208
ORF7a79A79del2GCc--c22B.1.177.40.000422
ORF7a79A79del2GCc--c22B.1.20.000018
ORF7a79A79del2GCc--c12B.1.617.20.000004
ORF7a79A79del2GCc--c22P.1.140.000096
ORF7a79A79del2GCc--c12Q.80.000165
ORF7a79A79del2GCc--c11AY.260.000028
ORF7a79A79del2GCc--c11AY.30.00001
ORF7a79A79del2GCc--c11AY.39.10.00004
ORF7a79A79del2GCc--c11AY.98.10.000048
ORF7a79A79del2GCc--c11B.10.000009
ORF7a79A79del2GCc--c11B.1.1.1350.004695
ORF7a79A79del2GCc--c11B.1.1.370.000193

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.