CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 79

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF7a	79	A79D		nonsyn	gCc	gAc	15261	15244	0.998886	27628-27630
ORF7a	79	A79D		nonsyn	gCC	gAT	15261	17	0.00111395	27628-27630
ORF7a	79	A79A		syn	gcC	gcT	7972	6849	0.859132	27628-27630
ORF7a	79	A79A		syn	gcC	gcA	7972	1062	0.133216	27628-27630
ORF7a	79	A79A		syn	gcC	gcG	7972	61	0.00765178	27628-27630
ORF7a	79	A79del		del	GCC	---	7865	7865	1	27628-27630
ORF7a	79	A79del1		del	Gcc	-cc	1716	1679	0.978438	27628-27630
ORF7a	79	A79del1		del	gcC	gc-	1716	17	0.00990676	27628-27630
ORF7a	79	A79del1		del	gCc	g-c	1716	6	0.0034965	27628-27630
ORF7a	79	A79del1		del	GCc	-Nc	1716	4	0.002331	27628-27630
ORF7a	79	A79del1		del	GCc	-Ac	1716	3	0.00174825	27628-27630
ORF7a	79	A79del1		del	gCC	g-N	1716	2	0.0011655	27628-27630
ORF7a	79	A79del1		del	GCC	-NN	1716	2	0.0011655	27628-27630
ORF7a	79	A79del1		del	GCc	-Tc	1716	2	0.0011655	27628-27630
ORF7a	79	A79del1		del	GcC	-cN	1716	1	0.000582751	27628-27630
ORF7a	79	A79S		nonsyn	Gcc	Tcc	1391	1390	0.999281	27628-27630
ORF7a	79	A79S		nonsyn	GcC	TcA	1391	1	0.000718907	27628-27630
ORF7a	79	A79V		nonsyn	gCc	gTc	1012	988	0.976285	27628-27630
ORF7a	79	A79V		nonsyn	gCC	gTT	1012	23	0.0227273	27628-27630
ORF7a	79	A79V		nonsyn	gCC	gTA	1012	1	0.000988142	27628-27630
ORF7a	79	A79T		nonsyn	Gcc	Acc	187	186	0.994652	27628-27630
ORF7a	79	A79T		nonsyn	GcC	AcG	187	1	0.00534759	27628-27630
ORF7a	79	A79del2		del	GCc	--c	148	92	0.621622	27628-27630
ORF7a	79	A79del2		del	gCC	g--	148	55	0.371622	27628-27630
ORF7a	79	A79del2		del	GCC	--N	148	1	0.00675676	27628-27630
ORF7a	79	A79P		nonsyn	Gcc	Ccc	88	87	0.988636	27628-27630
ORF7a	79	A79P		nonsyn	GcC	CcA	88	1	0.0113636	27628-27630
ORF7a	79	A79G		nonsyn	gCc	gGc	36	24	0.666667	27628-27630
ORF7a	79	A79G		nonsyn	gCC	gGA	36	12	0.333333	27628-27630
ORF7a	79	A79Y		nonsyn	GCc	TAc	5	4	0.8	27628-27630
ORF7a	79	A79Y		nonsyn	GCC	TAT	5	1	0.2	27628-27630
ORF7a	79	A79N		nonsyn	GCC	AAT	3	2	0.666667	27628-27630
ORF7a	79	A79I		nonsyn	GCC	ATT	3	2	0.666667	27628-27630
ORF7a	79	A79I		nonsyn	GCC	ATA	3	1	0.333333	27628-27630
ORF7a	79	A79N		nonsyn	GCc	AAc	3	1	0.333333	27628-27630
ORF7a	79	A79C		nonsyn	GCc	TGc	2	2	1	27628-27630
ORF7a	79	A79F		nonsyn	GCc	TTc	2	2	1	27628-27630
ORF7a	79	A79E		nonsyn	gCC	gAG	2	1	0.5	27628-27630
ORF7a	79	A79E		nonsyn	gCC	gAA	2	1	0.5	27628-27630
ORF7a	79	A79W		nonsyn	GCC	TGG	1	1	1	27628-27630

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF7a	79	A79D	gCc	gAc	15244	15261	All	0.002916
ORF7a	79	A79D	gCC	gAT	17	15261	All	0.000003
ORF7a	79	A79D	gCc	gAc	8174	8184	AY.7.1	0.921222
ORF7a	79	A79D	gCC	gAT	10	8184	AY.7.1	0.001127
ORF7a	79	A79A	gcC	gcT	6849	7972	All	0.00131
ORF7a	79	A79A	gcC	gcA	1062	7972	All	0.000203
ORF7a	79	A79A	gcC	gcG	61	7972	All	0.000012
ORF7a	79	A79del	GCC	---	7865	7865	All	0.001504
ORF7a	79	A79D	gCc	gAc	4791	4791	AY.7	0.939044
ORF7a	79	A79del	GCC	---	2805	2805	AY.4	0.004366
ORF7a	79	A79A	gcC	gcT	1710	1877	B.1.1.7	0.001531
ORF7a	79	A79A	gcC	gcA	131	1877	B.1.1.7	0.000117
ORF7a	79	A79A	gcC	gcG	36	1877	B.1.1.7	0.000032
ORF7a	79	A79del1	Gcc	-cc	1679	1716	All	0.000321
ORF7a	79	A79del1	gcC	gc-	17	1716	All	0.000003
ORF7a	79	A79del1	gCc	g-c	6	1716	All	0.000001
ORF7a	79	A79del1	GCc	-Nc	4	1716	All	0.000001
ORF7a	79	A79del1	GCc	-Ac	3	1716	All	0.000001
ORF7a	79	A79del1	GCc	-Tc	2	1716	All	0
ORF7a	79	A79del1	GCC	-NN	2	1716	All	0
ORF7a	79	A79del1	gCC	g-N	2	1716	All	0
ORF7a	79	A79del1	GcC	-cN	1	1716	All	0
ORF7a	79	A79D	gCc	gAc	1572	1572	AY.7.2	0.879195
ORF7a	79	A79S	Gcc	Tcc	1390	1391	All	0.000266
ORF7a	79	A79S	GcC	TcA	1	1391	All	0
ORF7a	79	A79del	GCC	---	1231	1231	B.1.1.7	0.001102
ORF7a	79	A79V	gCc	gTc	988	1012	All	0.000189
ORF7a	79	A79V	gCC	gTT	23	1012	All	0.000004
ORF7a	79	A79V	gCC	gTA	1	1012	All	0
ORF7a	79	A79del1	Gcc	-cc	982	984	B.1.617.2	0.003698
ORF7a	79	A79del1	GCc	-Nc	2	984	B.1.617.2	0.000008
ORF7a	79	A79A	gcC	gcT	720	781	AY.4	0.001121
ORF7a	79	A79A	gcC	gcA	56	781	AY.4	0.000087
ORF7a	79	A79A	gcC	gcG	5	781	AY.4	0.000008
ORF7a	79	A79S	Gcc	Tcc	731	731	B.1.617.2	0.002753
ORF7a	79	A79A	gcC	gcT	562	562	B.1.1.486	0.886435
ORF7a	79	A79A	gcC	gcT	226	441	B.1.526	0.005312
ORF7a	79	A79A	gcC	gcA	215	441	B.1.526	0.005053
ORF7a	79	A79del	GCC	---	411	411	AY.4.2	0.008914
ORF7a	79	A79A	gcC	gcT	194	366	B.1.2	0.001708
ORF7a	79	A79A	gcC	gcA	172	366	B.1.2	0.001515
ORF7a	79	A79A	gcC	gcT	347	348	B.1.1.214	0.019244
ORF7a	79	A79A	gcC	gcG	1	348	B.1.1.214	0.000055
ORF7a	79	A79A	gcC	gcT	261	307	B.1.617.2	0.000983
ORF7a	79	A79A	gcC	gcA	45	307	B.1.617.2	0.000169
ORF7a	79	A79A	gcC	gcG	1	307	B.1.617.2	0.000004
ORF7a	79	A79del	GCC	---	304	304	B.1.617.2	0.001145
ORF7a	79	A79A	gcC	gcT	239	263	B.1.429	0.005623
ORF7a	79	A79A	gcC	gcA	23	263	B.1.429	0.000541
ORF7a	79	A79A	gcC	gcG	1	263	B.1.429	0.000024
ORF7a	79	A79V	gCc	gTc	208	210	B.1.1.7	0.000186
ORF7a	79	A79V	gCC	gTT	2	210	B.1.1.7	0.000002
ORF7a	79	A79A	gcC	gcT	198	203	AY.43	0.000877
ORF7a	79	A79A	gcC	gcA	4	203	AY.43	0.000018
ORF7a	79	A79A	gcC	gcG	1	203	AY.43	0.000004
ORF7a	79	A79del	GCC	---	192	192	AY.103	0.001192
ORF7a	79	A79T	Gcc	Acc	186	187	All	0.000036
ORF7a	79	A79T	GcC	AcG	1	187	All	0
ORF7a	79	A79V	gCc	gTc	184	184	AY.4	0.000286
ORF7a	79	A79del	GCC	---	184	184	AY.43	0.000815
ORF7a	79	A79A	gcC	gcT	123	179	AY.103	0.000764
ORF7a	79	A79A	gcC	gcA	55	179	AY.103	0.000341
ORF7a	79	A79A	gcC	gcG	1	179	AY.103	0.000006
ORF7a	79	A79del	GCC	---	179	179	AY.3	0.00178
ORF7a	79	A79del	GCC	---	179	179	B.1.177.21	0.013688
ORF7a	79	A79del	GCC	---	176	176	AY.39	0.004349
ORF7a	79	A79del1	Gcc	-cc	166	169	AY.102	0.004401
ORF7a	79	A79del1	GCc	-Nc	2	169	AY.102	0.000053
ORF7a	79	A79del1	GCC	-NN	1	169	AY.102	0.000027
ORF7a	79	A79D	gCc	gAc	162	162	AY.4	0.000252
ORF7a	79	A79del	GCC	---	161	161	AY.44	0.00098
ORF7a	79	A79S	Gcc	Tcc	151	151	AY.43	0.000669
ORF7a	79	A79del2	GCc	--c	92	148	All	0.000018
ORF7a	79	A79del2	gCC	g--	55	148	All	0.000011
ORF7a	79	A79del2	GCC	--N	1	148	All	0
ORF7a	79	A79A	gcC	gcT	123	128	AY.3	0.001223
ORF7a	79	A79A	gcC	gcA	5	128	AY.3	0.00005
ORF7a	79	A79del	GCC	---	124	124	AY.29	0.001956
ORF7a	79	A79D	gCc	gAc	119	119	AY.42	0.004787
ORF7a	79	A79D	gCc	gAc	117	117	B.1.1.7	0.000105
ORF7a	79	A79A	gcC	gcT	111	114	AY.47	0.003453
ORF7a	79	A79A	gcC	gcA	3	114	AY.47	0.000093
ORF7a	79	A79A	gcC	gcT	101	108	B.1	0.000925
ORF7a	79	A79A	gcC	gcA	7	108	B.1	0.000064
ORF7a	79	A79V	gCc	gTc	102	102	AY.46.6	0.007365
ORF7a	79	A79A	gcC	gcT	98	101	B.1.243	0.006819
ORF7a	79	A79A	gcC	gcA	3	101	B.1.243	0.000209
ORF7a	79	A79del	GCC	---	96	96	AY.26	0.002718
ORF7a	79	A79del1	Gcc	-cc	95	96	AY.43	0.000421
ORF7a	79	A79del1	gcC	gc-	1	96	AY.43	0.000004
ORF7a	79	A79del2	GCc	--c	51	93	B.1.1.7	0.000046
ORF7a	79	A79del2	gCC	g--	42	93	B.1.1.7	0.000038
ORF7a	79	A79A	gcC	gcT	79	91	B.1.1	0.001433
ORF7a	79	A79A	gcC	gcA	12	91	B.1.1	0.000218
ORF7a	79	A79A	gcC	gcT	75	90	P.1	0.001182
ORF7a	79	A79A	gcC	gcA	11	90	P.1	0.000173
ORF7a	79	A79A	gcC	gcG	4	90	P.1	0.000063
ORF7a	79	A79P	Gcc	Ccc	87	88	All	0.000017
ORF7a	79	A79P	GcC	CcA	1	88	All	0
ORF7a	79	A79del	GCC	---	87	87	AY.25	0.000523
ORF7a	79	A79D	gCc	gAc	86	86	B.1.617.2	0.000324
ORF7a	79	A79A	gcC	gcT	72	85	AY.39	0.001779
ORF7a	79	A79A	gcC	gcA	13	85	AY.39	0.000321
ORF7a	79	A79A	gcC	gcT	82	82	A.2.5	0.040918
ORF7a	79	A79del	GCC	---	78	78	AY.100	0.003589
ORF7a	79	A79V	gCc	gTc	78	78	AY.4.5	0.008384
ORF7a	79	A79del	GCC	---	73	73	AY.42	0.002937
ORF7a	79	A79del1	Gcc	-cc	64	72	AY.39	0.001582
ORF7a	79	A79del1	gcC	gc-	7	72	AY.39	0.000173
ORF7a	79	A79del1	GCC	-NN	1	72	AY.39	0.000025
ORF7a	79	A79del	GCC	---	72	72	AY.98	0.005688
ORF7a	79	A79S	Gcc	Tcc	71	72	B.1.1.7	0.000064
ORF7a	79	A79S	GcC	TcA	1	72	B.1.1.7	0.000001
ORF7a	79	A79del	GCC	---	71	71	B.1.526	0.001669
ORF7a	79	A79del1	Gcc	-cc	70	70	AY.120	0.002603
ORF7a	79	A79S	Gcc	Tcc	67	67	AY.102	0.001776
ORF7a	79	A79A	gcC	gcA	56	66	P.1.14	0.002677
ORF7a	79	A79A	gcC	gcT	10	66	P.1.14	0.000478
ORF7a	79	A79A	gcC	gcT	42	65	AY.25	0.000253
ORF7a	79	A79A	gcC	gcA	23	65	AY.25	0.000138
ORF7a	79	A79A	gcC	gcT	65	65	P.2	0.012131
ORF7a	79	A79del	GCC	---	64	64	B.1.177	0.000843
ORF7a	79	A79del	GCC	---	62	62	AY.120	0.002305
ORF7a	79	A79A	gcC	gcA	49	61	AY.44	0.000298
ORF7a	79	A79A	gcC	gcT	10	61	AY.44	0.000061
ORF7a	79	A79A	gcC	gcG	2	61	AY.44	0.000012
ORF7a	79	A79del	GCC	---	60	60	B.1.2	0.000528
ORF7a	79	A79S	Gcc	Tcc	59	59	AY.4	0.000092
ORF7a	79	A79A	gcC	gcT	56	58	AY.102	0.001485
ORF7a	79	A79A	gcC	gcA	2	58	AY.102	0.000053
ORF7a	79	A79T	Gcc	Acc	55	55	AY.4	0.000086
ORF7a	79	A79A	gcC	gcA	38	51	AY.100	0.001748
ORF7a	79	A79A	gcC	gcT	13	51	AY.100	0.000598
ORF7a	79	A79A	gcC	gcT	46	50	B.1.351	0.001367
ORF7a	79	A79A	gcC	gcA	3	50	B.1.351	0.000089
ORF7a	79	A79A	gcC	gcG	1	50	B.1.351	0.00003
ORF7a	79	A79del1	Gcc	-cc	49	49	AY.46.4	0.008061
ORF7a	79	A79S	Gcc	Tcc	47	47	AY.120	0.001747
ORF7a	79	A79del	GCC	---	44	44	B.1.621	0.003895
ORF7a	79	A79del	GCC	---	43	43	B.1	0.000394
ORF7a	79	A79del	GCC	---	41	41	B.1.1.284	0.004403
ORF7a	79	A79A	gcC	gcT	38	40	B.1.177	0.0005
ORF7a	79	A79A	gcC	gcA	1	40	B.1.177	0.000013
ORF7a	79	A79A	gcC	gcG	1	40	B.1.177	0.000013
ORF7a	79	A79del	GCC	---	40	40	P.1	0.00063
ORF7a	79	A79del1	Gcc	-cc	33	37	AY.4	0.000051
ORF7a	79	A79del1	gcC	gc-	3	37	AY.4	0.000005
ORF7a	79	A79del1	GcC	-cN	1	37	AY.4	0.000002
ORF7a	79	A79D	gCc	gAc	37	37	AY.6	0.001522
ORF7a	79	A79G	gCc	gGc	24	36	All	0.000005
ORF7a	79	A79G	gCC	gGA	12	36	All	0.000002
ORF7a	79	A79P	Gcc	Ccc	36	36	AY.102	0.000955
ORF7a	79	A79A	gcC	gcT	36	36	B.1.558	0.164384
ORF7a	79	A79A	gcC	gcT	35	35	B.1.371	0.039282
ORF7a	79	A79del	GCC	---	34	34	AY.3.1	0.002899
ORF7a	79	A79del	GCC	---	34	34	B.1.160	0.00106
ORF7a	79	A79del1	Gcc	-cc	30	33	AY.103	0.000186
ORF7a	79	A79del1	gCc	g-c	1	33	AY.103	0.000006
ORF7a	79	A79del1	gCC	g-N	1	33	AY.103	0.000006
ORF7a	79	A79del1	gcC	gc-	1	33	AY.103	0.000006
ORF7a	79	A79A	gcC	gcT	22	33	AY.26	0.000623
ORF7a	79	A79A	gcC	gcA	11	33	AY.26	0.000311
ORF7a	79	A79S	Gcc	Tcc	33	33	AY.46	0.003435
ORF7a	79	A79V	gCc	gTc	32	32	AY.103	0.000199
ORF7a	79	A79del	GCC	---	32	32	AY.119	0.00113
ORF7a	79	A79del	GCC	---	32	32	AY.46.6	0.002311
ORF7a	79	A79del	GCC	---	32	32	AY.47	0.000995
ORF7a	79	A79A	gcC	gcT	28	32	B.1.160	0.000873
ORF7a	79	A79A	gcC	gcA	3	32	B.1.160	0.000094
ORF7a	79	A79A	gcC	gcG	1	32	B.1.160	0.000031
ORF7a	79	A79V	gCc	gTc	30	30	B.1.2	0.000264
ORF7a	79	A79A	gcC	gcT	30	30	B.1.609	0.014382
ORF7a	79	A79del	GCC	---	29	29	AY.20	0.001127
ORF7a	79	A79del	GCC	---	29	29	AY.36	0.004298
ORF7a	79	A79del	GCC	---	29	29	AY.6	0.001193
ORF7a	79	A79A	gcC	gcT	22	27	AY.4.2	0.000477
ORF7a	79	A79A	gcC	gcA	5	27	AY.4.2	0.000108
ORF7a	79	A79A	gcC	gcT	27	27	B.1.1.434	0.009411
ORF7a	79	A79del	GCC	---	27	27	B.1.351	0.000803
ORF7a	79	A79V	gCc	gTc	27	27	B.1.617.2	0.000102
ORF7a	79	A79T	Gcc	Acc	26	26	AY.3	0.000259
ORF7a	79	A79S	Gcc	Tcc	26	26	AY.39	0.000642
ORF7a	79	A79del	GCC	---	26	26	B.1.1.214	0.001442
ORF7a	79	A79del	GCC	---	25	25	AY.7.2	0.013982
ORF7a	79	A79del	GCC	---	25	25	B.1.637	0.001827
ORF7a	79	A79A	gcC	gcT	21	24	AY.118	0.001316
ORF7a	79	A79A	gcC	gcA	3	24	AY.118	0.000188
ORF7a	79	A79A	gcC	gcT	22	24	B.1.595	0.005741
ORF7a	79	A79A	gcC	gcA	2	24	B.1.595	0.000522
ORF7a	79	A79A	gcC	gcT	23	23	B.1.1.275	0.258427
ORF7a	79	A79A	gcC	gcT	23	23	B.1.637	0.001681
ORF7a	79	A79del	GCC	---	22	22	AY.5	0.000454
ORF7a	79	A79P	Gcc	Ccc	22	22	B.1.617.2	0.000083
ORF7a	79	A79A	gcC	gcT	22	22	P.1.15	0.005112
ORF7a	79	A79del	GCC	---	21	21	AY.46.4	0.003455
ORF7a	79	A79A	gcC	gcT	18	21	AY.68	0.004927
ORF7a	79	A79A	gcC	gcA	3	21	AY.68	0.000821
ORF7a	79	A79A	gcC	gcT	17	21	B.1.1.519	0.000675
ORF7a	79	A79A	gcC	gcA	4	21	B.1.1.519	0.000159
ORF7a	79	A79del	GCC	---	20	20	AY.102	0.00053
ORF7a	79	A79del1	Gcc	-cc	20	20	AY.54	0.001907
ORF7a	79	A79A	gcC	gcT	20	20	AY.75	0.00112
ORF7a	79	A79del	GCC	---	20	20	B.1.429	0.000471
ORF7a	79	A79D	gCc	gAc	12	19	AY.5	0.000248
ORF7a	79	A79D	gCC	gAT	7	19	AY.5	0.000145
ORF7a	79	A79del	GCC	---	19	19	AY.75	0.001064
ORF7a	79	A79V	gCc	gTc	19	19	AY.99.2	0.001751
ORF7a	79	A79V	gCc	gTc	18	19	B.1	0.000165
ORF7a	79	A79V	gCC	gTT	1	19	B.1	0.000009
ORF7a	79	A79T	Gcc	Acc	19	19	B.1.1.7	0.000017
ORF7a	79	A79A	gcC	gcT	19	19	B.1.177.75	0.019771
ORF7a	79	A79A	gcC	gcT	19	19	B.1.241	0.015422
ORF7a	79	A79A	gcC	gcT	19	19	B.1.427	0.000959
ORF7a	79	A79V	gCc	gTc	18	18	AY.25	0.000108
ORF7a	79	A79V	gCc	gTc	14	18	B.1.1	0.000254
ORF7a	79	A79V	gCC	gTT	4	18	B.1.1	0.000073
ORF7a	79	A79T	Gcc	Acc	18	18	B.1.177	0.000237
ORF7a	79	A79S	Gcc	Tcc	18	18	B.1.177	0.000237
ORF7a	79	A79D	gCc	gAc	17	17	AY.11	0.022758
ORF7a	79	A79A	gcC	gcT	15	17	AY.20	0.000583
ORF7a	79	A79A	gcC	gcA	2	17	AY.20	0.000078
ORF7a	79	A79A	gcC	gcT	17	17	AY.67	0.007892
ORF7a	79	A79A	gcC	gcT	17	17	B.1.1.141	0.034205
ORF7a	79	A79A	gcC	gcT	12	17	B.1.258	0.000799
ORF7a	79	A79A	gcC	gcA	5	17	B.1.258	0.000333
ORF7a	79	A79del	GCC	---	16	16	AY.98.1	0.000775
ORF7a	79	A79A	gcC	gcT	13	16	B.1.36	0.001897
ORF7a	79	A79A	gcC	gcA	3	16	B.1.36	0.000438
ORF7a	79	A79A	gcC	gcT	16	16	B.1.369	0.004564
ORF7a	79	A79A	gcC	gcT	14	15	AY.119	0.000494
ORF7a	79	A79A	gcC	gcA	1	15	AY.119	0.000035
ORF7a	79	A79del	GCC	---	15	15	AY.30	0.005936
ORF7a	79	A79V	gCc	gTc	15	15	AY.9.1	0.001256
ORF7a	79	A79T	Gcc	Acc	15	15	B.1.177.21	0.001147
ORF7a	79	A79V	gCc	gTc	13	15	B.1.351	0.000386
ORF7a	79	A79V	gCC	gTT	2	15	B.1.351	0.000059
ORF7a	79	A79del	GCC	---	15	15	C.37	0.001741
ORF7a	79	A79del	GCC	---	14	14	AY.117	0.001183
ORF7a	79	A79A	gcC	gcT	13	14	AY.29	0.000205
ORF7a	79	A79A	gcC	gcA	1	14	AY.29	0.000016
ORF7a	79	A79del1	Gcc	-cc	13	14	AY.44	0.000079
ORF7a	79	A79del1	gCc	g-c	1	14	AY.44	0.000006
ORF7a	79	A79A	gcC	gcT	14	14	B.1.1.192	0.032333
ORF7a	79	A79del	GCC	---	14	14	B.1.1.258	0.045603
ORF7a	79	A79A	gcC	gcT	10	14	B.1.1.33	0.004209
ORF7a	79	A79A	gcC	gcA	4	14	B.1.1.33	0.001684
ORF7a	79	A79D	gCc	gAc	13	13	AY.113	0.001851
ORF7a	79	A79del	GCC	---	13	13	AY.23	0.000907
ORF7a	79	A79A	gcC	gcT	12	13	AY.5	0.000248
ORF7a	79	A79A	gcC	gcG	1	13	AY.5	0.000021
ORF7a	79	A79del	GCC	---	13	13	B.1.1	0.000236
ORF7a	79	A79del	GCC	---	13	13	B.1.525	0.001471
ORF7a	79	A79del	GCC	---	13	13	R.1	0.00117
ORF7a	79	A79del	GCC	---	12	12	AY.116	0.003441
ORF7a	79	A79A	gcC	gcA	6	12	AY.120	0.000223
ORF7a	79	A79A	gcC	gcT	6	12	AY.120	0.000223
ORF7a	79	A79del	GCC	---	12	12	AY.121	0.001624
ORF7a	79	A79A	gcC	gcT	12	12	AY.4.2.1	0.001788
ORF7a	79	A79A	gcC	gcT	8	12	AY.42	0.000322
ORF7a	79	A79A	gcC	gcA	4	12	AY.42	0.000161
ORF7a	79	A79V	gCc	gTc	12	12	AY.44	0.000073
ORF7a	79	A79del1	Gcc	-cc	12	12	AY.68	0.003285
ORF7a	79	A79A	gcC	gcT	12	12	B.1.1.39	0.006116
ORF7a	79	A79A	gcC	gcT	12	12	B.1.1.70	0.004093
ORF7a	79	A79del	GCC	---	12	12	B.1.324	0.019262
ORF7a	79	A79del	GCC	---	11	11	AY.110	0.00124
ORF7a	79	A79del	GCC	---	11	11	AY.71	0.005226
ORF7a	79	A79D	gCc	gAc	11	11	AY.88	0.009726
ORF7a	79	A79del	GCC	---	11	11	AY.9	0.000744
ORF7a	79	A79del1	Gcc	-cc	7	11	B.1.1.7	0.000006
ORF7a	79	A79del1	GCc	-Tc	1	11	B.1.1.7	0.000001
ORF7a	79	A79del1	gCc	g-c	1	11	B.1.1.7	0.000001
ORF7a	79	A79del1	gcC	gc-	1	11	B.1.1.7	0.000001
ORF7a	79	A79del1	gCC	g-N	1	11	B.1.1.7	0.000001
ORF7a	79	A79del2	GCc	--c	11	11	B.1.177	0.000145
ORF7a	79	A79A	gcC	gcT	11	11	B.1.541	0.048673
ORF7a	79	A79del	GCC	---	11	11	B.1.596	0.000959
ORF7a	79	A79A	gcC	gcA	11	11	N.7	0.323529
ORF7a	79	A79del1	Gcc	-cc	10	10	AY.106	0.003349
ORF7a	79	A79S	Gcc	Tcc	10	10	AY.20	0.000389
ORF7a	79	A79G	gCC	gGA	10	10	AY.25	0.00006
ORF7a	79	A79A	gcC	gcA	5	10	AY.33	0.000334
ORF7a	79	A79A	gcC	gcT	5	10	AY.33	0.000334
ORF7a	79	A79del1	Gcc	-cc	10	10	AY.37	0.003161
ORF7a	79	A79S	Gcc	Tcc	10	10	AY.37	0.003161
ORF7a	79	A79V	gCc	gTc	10	10	AY.39	0.000247
ORF7a	79	A79del	GCC	---	10	10	AY.39.1	0.000396
ORF7a	79	A79V	gCc	gTc	10	10	AY.4.2.1	0.00149
ORF7a	79	A79V	gCc	gTc	10	10	AY.43	0.000044
ORF7a	79	A79D	gCc	gAc	10	10	AY.46.4	0.001645
ORF7a	79	A79S	Gcc	Tcc	10	10	AY.47	0.000311
ORF7a	79	A79A	gcC	gcT	8	10	AY.54	0.000763
ORF7a	79	A79A	gcC	gcA	2	10	AY.54	0.000191
ORF7a	79	A79A	gcC	gcT	10	10	AY.98	0.00079
ORF7a	79	A79A	gcC	gcT	10	10	B.1.1.348	0.007962
ORF7a	79	A79del	GCC	---	10	10	B.1.1.519	0.000397
ORF7a	79	A79G	gCc	gGc	10	10	B.1.1.7	0.000009
ORF7a	79	A79A	gcC	gcT	7	10	C.37	0.000812
ORF7a	79	A79A	gcC	gcA	3	10	C.37	0.000348
ORF7a	79	A79del	GCC	---	10	10	Q.8	0.001649
ORF7a	79	A79S	Gcc	Tcc	9	9	AY.117	0.000761
ORF7a	79	A79D	gCc	gAc	9	9	AY.121	0.001218
ORF7a	79	A79A	gcC	gcT	8	9	AY.4.5	0.00086
ORF7a	79	A79A	gcC	gcA	1	9	AY.4.5	0.000107
ORF7a	79	A79S	Gcc	Tcc	9	9	AY.44	0.000055
ORF7a	79	A79A	gcC	gcT	8	9	AY.46.6	0.000578
ORF7a	79	A79A	gcC	gcA	1	9	AY.46.6	0.000072
ORF7a	79	A79A	gcC	gcT	9	9	AY.69	0.00168
ORF7a	79	A79A	gcC	gcT	7	9	AY.9.2	0.000257
ORF7a	79	A79A	gcC	gcA	2	9	AY.9.2	0.000073
ORF7a	79	A79S	Gcc	Tcc	9	9	B.1	0.000082
ORF7a	79	A79A	gcC	gcT	9	9	B.1.1.402	0.1
ORF7a	79	A79A	gcC	gcT	9	9	B.1.1.50	0.00611
ORF7a	79	A79A	gcC	gcT	9	9	B.1.239	0.010989
ORF7a	79	A79del	GCC	---	9	9	B.1.427	0.000454
ORF7a	79	A79A	gcC	gcT	9	9	B.1.551	0.011613
ORF7a	79	A79A	gcC	gcT	8	9	B.1.596	0.000697
ORF7a	79	A79A	gcC	gcA	1	9	B.1.596	0.000087
ORF7a	79	A79del	GCC	---	9	9	L.1	0.017143
ORF7a	79	A79S	Gcc	Tcc	8	8	AY.103	0.00005
ORF7a	79	A79del	GCC	---	8	8	AY.113	0.001139
ORF7a	79	A79del	GCC	---	8	8	AY.118	0.000501
ORF7a	79	A79A	gcC	gcT	7	8	AY.3.1	0.000597
ORF7a	79	A79A	gcC	gcA	1	8	AY.3.1	0.000085
ORF7a	79	A79A	gcC	gcT	8	8	AY.34	0.000776
ORF7a	79	A79del1	Gcc	-cc	7	8	AY.42	0.000282
ORF7a	79	A79del1	gcC	gc-	1	8	AY.42	0.00004
ORF7a	79	A79D	gCc	gAc	8	8	AY.43	0.000035
ORF7a	79	A79del1	Gcc	-cc	8	8	AY.46.2	0.005083
ORF7a	79	A79V	gCc	gTc	8	8	AY.61	0.000838
ORF7a	79	A79A	gcC	gcT	8	8	AY.61	0.000838
ORF7a	79	A79del	GCC	---	8	8	AY.7	0.001568
ORF7a	79	A79del	GCC	---	8	8	AY.99.2	0.000737
ORF7a	79	A79del	GCC	---	8	8	B.1.1.231	0.024768
ORF7a	79	A79A	gcC	gcT	8	8	B.1.1.311	0.002865
ORF7a	79	A79V	gCc	gTc	8	8	B.1.1.348	0.006369
ORF7a	79	A79del	GCC	---	8	8	B.1.160.31	0.064516
ORF7a	79	A79A	gcC	gcT	8	8	B.1.396	0.005646
ORF7a	79	A79A	gcC	gcT	8	8	B.1.561	0.003176
ORF7a	79	A79A	gcC	gcT	4	8	B.1.621	0.000354
ORF7a	79	A79A	gcC	gcA	4	8	B.1.621	0.000354
ORF7a	79	A79del1	Gcc	-cc	7	7	AY.119	0.000247
ORF7a	79	A79A	gcC	gcT	7	7	AY.121	0.000947
ORF7a	79	A79A	gcC	gcT	7	7	AY.14	0.000616
ORF7a	79	A79del	GCC	---	7	7	AY.29.1	0.001544
ORF7a	79	A79del	GCC	---	7	7	AY.35	0.001631
ORF7a	79	A79P	Gcc	Ccc	7	7	AY.4	0.000011
ORF7a	79	A79del	GCC	---	7	7	AY.45	0.000852
ORF7a	79	A79A	gcC	gcT	7	7	AY.46	0.000729
ORF7a	79	A79A	gcC	gcT	7	7	AY.5.3	0.002362
ORF7a	79	A79G	gCc	gGc	7	7	AY.7.1	0.000789
ORF7a	79	A79A	gcC	gcT	7	7	B.1.1.222	0.001428
ORF7a	79	A79A	gcC	gcT	7	7	B.1.1.224	0.1
ORF7a	79	A79A	gcC	gcT	7	7	B.1.1.284	0.000752
ORF7a	79	A79V	gCc	gTc	6	7	B.1.177	0.000079
ORF7a	79	A79V	gCC	gTT	1	7	B.1.177	0.000013
ORF7a	79	A79A	gcC	gcT	6	7	B.1.177.82	0.002864
ORF7a	79	A79A	gcC	gcA	1	7	B.1.177.82	0.000477
ORF7a	79	A79S	Gcc	Tcc	7	7	B.1.2	0.000062
ORF7a	79	A79V	gCc	gTc	7	7	B.1.526	0.000165
ORF7a	79	A79T	Gcc	Acc	7	7	B.1.617.2	0.000026
ORF7a	79	A79V	gCc	gTc	7	7	P.1	0.00011
ORF7a	79	A79V	gCc	gTc	7	7	Q.1	0.000884
ORF7a	79	A79del1	Gcc	-cc	6	6	AY.110	0.000676
ORF7a	79	A79del	GCC	---	6	6	AY.120.1	0.001926
ORF7a	79	A79A	gcC	gcT	6	6	AY.23	0.000418
ORF7a	79	A79V	gCc	gTc	6	6	AY.23	0.000418
ORF7a	79	A79V	gCc	gTc	6	6	AY.3	0.00006
ORF7a	79	A79A	gcC	gcT	6	6	AY.39.1	0.000238
ORF7a	79	A79D	gCc	gAc	6	6	AY.45	0.00073
ORF7a	79	A79S	Gcc	Tcc	6	6	AY.45	0.00073
ORF7a	79	A79D	gCc	gAc	6	6	AY.54	0.000572
ORF7a	79	A79D	gCc	gAc	6	6	AY.84	0.002625
ORF7a	79	A79A	gcC	gcT	5	6	B.1.1.28	0.001556
ORF7a	79	A79A	gcC	gcA	1	6	B.1.1.28	0.000311
ORF7a	79	A79V	gCc	gTc	6	6	B.1.1.519	0.000238
ORF7a	79	A79P	Gcc	Ccc	6	6	B.1.177	0.000079
ORF7a	79	A79del	GCC	---	6	6	B.1.258	0.000399
ORF7a	79	A79S	Gcc	Tcc	6	6	B.1.351	0.000178
ORF7a	79	A79A	gcC	gcT	6	6	B.1.499	0.006303
ORF7a	79	A79A	gcC	gcT	6	6	B.1.562	0.111111
ORF7a	79	A79A	gcC	gcT	6	6	C.36	0.005464
ORF7a	79	A79del	GCC	---	6	6	P.1.15	0.001394
ORF7a	79	A79A	gcC	gcT	5	6	P.1.7	0.001596
ORF7a	79	A79A	gcC	gcA	1	6	P.1.7	0.000319
ORF7a	79	A79Y	GCc	TAc	4	5	All	0.000001
ORF7a	79	A79Y	GCC	TAT	1	5	All	0
ORF7a	79	A79V	gCc	gTc	5	5	AY.102	0.000133
ORF7a	79	A79del	GCC	---	5	5	AY.106	0.001674
ORF7a	79	A79D	gCc	gAc	5	5	AY.111	0.000916
ORF7a	79	A79S	Gcc	Tcc	5	5	AY.113	0.000712
ORF7a	79	A79S	Gcc	Tcc	5	5	AY.118	0.000313
ORF7a	79	A79del2	gCC	g--	5	5	AY.120	0.000186
ORF7a	79	A79T	Gcc	Acc	5	5	AY.25	0.00003
ORF7a	79	A79V	gCc	gTc	5	5	AY.3.1	0.000426
ORF7a	79	A79del	GCC	---	5	5	AY.34	0.000485
ORF7a	79	A79D	gCc	gAc	5	5	AY.4.3	0.004209
ORF7a	79	A79del1	Gcc	-cc	5	5	AY.46.1	0.005133
ORF7a	79	A79del	GCC	---	5	5	AY.61	0.000524
ORF7a	79	A79D	gCc	gAc	5	5	AY.75	0.00028
ORF7a	79	A79del	GCC	---	5	5	AY.80	0.005643
ORF7a	79	A79del	GCC	---	5	5	AY.9.2	0.000184
ORF7a	79	A79del1	Gcc	-cc	5	5	AY.98	0.000395
ORF7a	79	A79S	Gcc	Tcc	5	5	AY.99.2	0.000461
ORF7a	79	A79del	GCC	---	5	5	B.1.1.1	0.001633
ORF7a	79	A79A	gcC	gcT	5	5	B.1.1.25	0.002843
ORF7a	79	A79A	gcC	gcT	5	5	B.1.1.294	0.006329
ORF7a	79	A79A	gcC	gcT	5	5	B.1.1.316	0.004625
ORF7a	79	A79A	gcC	gcT	5	5	B.1.1.38	0.294118
ORF7a	79	A79A	gcC	gcT	5	5	B.1.177.10	0.00439
ORF7a	79	A79A	gcC	gcT	5	5	B.1.177.12	0.000758
ORF7a	79	A79T	Gcc	Acc	5	5	B.1.221	0.000355
ORF7a	79	A79A	gcC	gcT	4	5	B.1.221	0.000284
ORF7a	79	A79A	gcC	gcA	1	5	B.1.221	0.000071
ORF7a	79	A79del	GCC	---	5	5	B.1.234	0.00066
ORF7a	79	A79A	gcC	gcT	5	5	B.1.346	0.006553
ORF7a	79	A79del	GCC	---	5	5	B.1.375	0.004098
ORF7a	79	A79A	gcC	gcT	3	5	B.1.525	0.000339
ORF7a	79	A79A	gcC	gcA	2	5	B.1.525	0.000226
ORF7a	79	A79del	GCC	---	5	5	B.1.70	0.121951
ORF7a	79	A79A	gcC	gcT	5	5	C.16	0.005302
ORF7a	79	A79A	gcC	gcT	5	5	C.36.3	0.002836
ORF7a	79	A79del	GCC	---	5	5	P.2	0.000933
ORF7a	79	A79A	gcC	gcT	5	5	Q.4	0.002274
ORF7a	79	A79del	GCC	---	4	4	A	0.001548
ORF7a	79	A79del1	Gcc	-cc	4	4	AY.111	0.000733
ORF7a	79	A79A	gcC	gcT	3	4	AY.113	0.000427
ORF7a	79	A79A	gcC	gcA	1	4	AY.113	0.000142
ORF7a	79	A79del	GCC	---	4	4	AY.14	0.000352
ORF7a	79	A79V	gCc	gTc	4	4	AY.16	0.001519
ORF7a	79	A79V	gCc	gTc	4	4	AY.27	0.000259
ORF7a	79	A79A	gcC	gcT	4	4	AY.29.1	0.000882
ORF7a	79	A79del2	GCc	--c	4	4	AY.3.1	0.000341
ORF7a	79	A79del2	GCc	--c	3	4	AY.4	0.000005
ORF7a	79	A79del2	gCC	g--	1	4	AY.4	0.000002
ORF7a	79	A79del	GCC	---	4	4	AY.4.5	0.00043
ORF7a	79	A79del1	Gcc	-cc	4	4	AY.45	0.000487
ORF7a	79	A79A	gcC	gcT	3	4	AY.45	0.000365
ORF7a	79	A79A	gcC	gcA	1	4	AY.45	0.000122
ORF7a	79	A79del1	Gcc	-cc	4	4	AY.47	0.000124
ORF7a	79	A79S	Gcc	Tcc	4	4	AY.5	0.000083
ORF7a	79	A79del	GCC	---	4	4	AY.54	0.000381
ORF7a	79	A79D	gCc	gAc	4	4	AY.58	0.00363
ORF7a	79	A79A	gcC	gcT	4	4	AY.62	0.001743
ORF7a	79	A79A	gcC	gcT	4	4	AY.66	0.004278
ORF7a	79	A79del	GCC	---	4	4	AY.7.1	0.000451
ORF7a	79	A79del1	Gcc	-cc	4	4	AY.74	0.000463
ORF7a	79	A79A	gcC	gcA	2	4	AY.75.1	0.000361
ORF7a	79	A79A	gcC	gcT	2	4	AY.75.1	0.000361
ORF7a	79	A79A	gcC	gcT	4	4	AY.99.2	0.000369
ORF7a	79	A79V	gCc	gTc	4	4	B.1.1.271	0.222222
ORF7a	79	A79del	GCC	---	4	4	B.1.1.369	0.001785
ORF7a	79	A79A	gcC	gcT	4	4	B.1.1.412	0.030534
ORF7a	79	A79A	gcC	gcT	4	4	B.1.1.58	0.021505
ORF7a	79	A79A	gcC	gcT	4	4	B.1.177.7	0.000659
ORF7a	79	A79A	gcC	gcT	4	4	B.1.177.73	0.002265
ORF7a	79	A79A	gcC	gcT	4	4	B.1.177.81	0.000757
ORF7a	79	A79A	gcC	gcT	4	4	B.1.177.86	0.000734
ORF7a	79	A79T	Gcc	Acc	4	4	B.1.2	0.000035
ORF7a	79	A79del	GCC	---	4	4	B.1.214.2	0.002398
ORF7a	79	A79del	GCC	---	4	4	B.1.243	0.000278
ORF7a	79	A79V	gCc	gTc	4	4	B.1.243	0.000278
ORF7a	79	A79del2	GCc	--c	4	4	B.1.351	0.000119
ORF7a	79	A79A	gcC	gcT	4	4	B.1.351.2	0.00121
ORF7a	79	A79del	GCC	---	4	4	B.1.351.2	0.00121
ORF7a	79	A79A	gcC	gcT	3	4	B.1.351.3	0.002629
ORF7a	79	A79A	gcC	gcA	1	4	B.1.351.3	0.000876
ORF7a	79	A79A	gcC	gcT	4	4	B.1.36.29	0.002069
ORF7a	79	A79V	gCc	gTc	4	4	B.1.427	0.000202
ORF7a	79	A79V	gCc	gTc	4	4	B.1.429	0.000094
ORF7a	79	A79S	Gcc	Tcc	4	4	B.1.526	0.000094
ORF7a	79	A79A	gcC	gcT	4	4	B.1.617.1	0.000516
ORF7a	79	A79G	gCc	gGc	4	4	C.37	0.000464
ORF7a	79	A79A	gcC	gcT	4	4	Q.2	0.002454
ORF7a	79	A79A	gcC	gcT	4	4	Q.3	0.00058
ORF7a	79	A79I	GCC	ATT	2	3	All	0
ORF7a	79	A79N	GCC	AAT	2	3	All	0
ORF7a	79	A79I	GCC	ATA	1	3	All	0
ORF7a	79	A79N	GCc	AAc	1	3	All	0
ORF7a	79	A79D	gCc	gAc	3	3	AY.106	0.001005
ORF7a	79	A79del	GCC	---	3	3	AY.114	0.000693
ORF7a	79	A79A	gcC	gcT	3	3	AY.116	0.00086
ORF7a	79	A79D	gCc	gAc	3	3	AY.116	0.00086
ORF7a	79	A79V	gCc	gTc	3	3	AY.116.1	0.000934
ORF7a	79	A79del1	Gcc	-cc	3	3	AY.118	0.000188
ORF7a	79	A79del	GCC	---	3	3	AY.13	0.000483
ORF7a	79	A79del1	Gcc	-cc	3	3	AY.23	0.000209
ORF7a	79	A79A	gcC	gcT	3	3	AY.24	0.001293
ORF7a	79	A79del	GCC	---	3	3	AY.24	0.001293
ORF7a	79	A79del1	Gcc	-cc	2	3	AY.25	0.000012
ORF7a	79	A79del1	gcC	gc-	1	3	AY.25	0.000006
ORF7a	79	A79A	gcC	gcT	2	3	AY.27	0.000129
ORF7a	79	A79A	gcC	gcA	1	3	AY.27	0.000065
ORF7a	79	A79del1	Gcc	-cc	3	3	AY.3	0.00003
ORF7a	79	A79S	Gcc	Tcc	3	3	AY.3	0.00003
ORF7a	79	A79S	Gcc	Tcc	3	3	AY.32	0.001597
ORF7a	79	A79del	GCC	---	3	3	AY.33	0.0002
ORF7a	79	A79V	gCc	gTc	3	3	AY.39.1	0.000119
ORF7a	79	A79del1	Gcc	-cc	3	3	AY.40	0.002893
ORF7a	79	A79T	Gcc	Acc	3	3	AY.43	0.000013
ORF7a	79	A79D	gCc	gAc	3	3	AY.44	0.000018
ORF7a	79	A79T	Gcc	Acc	3	3	AY.44	0.000018
ORF7a	79	A79D	gCc	gAc	3	3	AY.46.6	0.000217
ORF7a	79	A79V	gCc	gTc	3	3	AY.47	0.000093
ORF7a	79	A79D	gCc	gAc	3	3	AY.5.3	0.001012
ORF7a	79	A79S	Gcc	Tcc	3	3	AY.54	0.000286
ORF7a	79	A79S	Gcc	Tcc	3	3	AY.6	0.000123
ORF7a	79	A79A	gcC	gcT	3	3	AY.64	0.001786
ORF7a	79	A79del1	Gcc	-cc	3	3	AY.84	0.001312
ORF7a	79	A79A	gcC	gcT	3	3	AY.85	0.001282
ORF7a	79	A79del	GCC	---	3	3	AY.88	0.002653
ORF7a	79	A79A	gcC	gcT	2	3	AY.9	0.000135
ORF7a	79	A79A	gcC	gcA	1	3	AY.9	0.000068
ORF7a	79	A79del	GCC	---	3	3	AY.92	0.000862
ORF7a	79	A79del1	Gcc	-cc	3	3	AY.98.1	0.000145
ORF7a	79	A79A	gcC	gcT	2	3	AY.98.1	0.000097
ORF7a	79	A79A	gcC	gcG	1	3	AY.98.1	0.000048
ORF7a	79	A79V	gCc	gTc	3	3	AY.99.1	0.004658
ORF7a	79	A79del1	Gcc	-cc	2	3	AY.99.2	0.000184
ORF7a	79	A79del1	gcC	gc-	1	3	AY.99.2	0.000092
ORF7a	79	A79A	gcC	gcT	2	3	B	0.000256
ORF7a	79	A79A	gcC	gcA	1	3	B	0.000128
ORF7a	79	A79del1	gCc	g-c	2	3	B.1	0.000018
ORF7a	79	A79del1	GCc	-Tc	1	3	B.1	0.000009
ORF7a	79	A79del	GCC	---	3	3	B.1.1.121	0.007282
ORF7a	79	A79A	gcC	gcT	3	3	B.1.1.135	0.014085
ORF7a	79	A79del	GCC	---	3	3	B.1.1.37	0.000579
ORF7a	79	A79A	gcC	gcT	3	3	B.1.1.416	0.002715
ORF7a	79	A79del	GCC	---	3	3	B.1.160.16	0.002788
ORF7a	79	A79A	gcC	gcT	3	3	B.1.160.30	0.008929
ORF7a	79	A79A	gcC	gcT	2	3	B.1.177.21	0.000153
ORF7a	79	A79A	gcC	gcA	1	3	B.1.177.21	0.000076
ORF7a	79	A79V	gCc	gTc	3	3	B.1.177.32	0.004049
ORF7a	79	A79A	gcC	gcT	3	3	B.1.177.60	0.000655
ORF7a	79	A79A	gcC	gcT	3	3	B.1.177.87	0.002183
ORF7a	79	A79D	gCc	gAc	3	3	B.1.2	0.000026
ORF7a	79	A79del	GCC	---	3	3	B.1.258.17	0.000312
ORF7a	79	A79V	gCC	gTT	3	3	B.1.36.1	0.003421
ORF7a	79	A79A	gcC	gcT	3	3	B.1.36.18	0.001261
ORF7a	79	A79A	gcC	gcT	3	3	B.1.367	0.002377
ORF7a	79	A79A	gcC	gcT	3	3	B.1.438.1	0.000322
ORF7a	79	A79del	GCC	---	3	3	B.1.575	0.00091
ORF7a	79	A79A	gcC	gcA	2	3	B.1.576	0.001813
ORF7a	79	A79A	gcC	gcT	1	3	B.1.576	0.000907
ORF7a	79	A79A	gcC	gcT	3	3	B.1.581	0.028302
ORF7a	79	A79del	GCC	---	3	3	B.1.595	0.000783
ORF7a	79	A79V	gCc	gTc	3	3	B.1.620	0.002838
ORF7a	79	A79del	GCC	---	3	3	B.1.626	0.017143
ORF7a	79	A79A	gcC	gcA	3	3	C.12	0.021583
ORF7a	79	A79A	gcC	gcT	3	3	C.35	0.002322
ORF7a	79	A79del	GCC	---	3	3	Q.1	0.000379
ORF7a	79	A79A	gcC	gcT	3	3	Q.6	0.019868
ORF7a	79	A79A	gcC	gcT	3	3	Q.8	0.000495
ORF7a	79	A79A	gcC	gcT	2	3	R.1	0.00018
ORF7a	79	A79A	gcC	gcA	1	3	R.1	0.00009
ORF7a	79	A79I	GCC	ATT	2	2		0.111111
ORF7a	79	A79V	gCc	gTc	2	2	A.2.5	0.000998
ORF7a	79	A79A	gcC	gcT	2	2	A.23.1	0.001408
ORF7a	79	A79del	GCC	---	2	2	A.28	0.005291
ORF7a	79	A79A	gcC	gcT	2	2	AD.2	0.000438
ORF7a	79	A79C	GCc	TGc	2	2	All	0
ORF7a	79	A79F	GCc	TTc	2	2	All	0
ORF7a	79	A79E	gCC	gAA	1	2	All	0
ORF7a	79	A79E	gCC	gAG	1	2	All	0
ORF7a	79	A79del1	Gcc	-cc	2	2	AY.1	0.000791
ORF7a	79	A79A	gcC	gcT	2	2	AY.10	0.00106
ORF7a	79	A79T	Gcc	Acc	2	2	AY.100	0.000092
ORF7a	79	A79D	gCc	gAc	2	2	AY.100	0.000092
ORF7a	79	A79S	Gcc	Tcc	2	2	AY.100	0.000092
ORF7a	79	A79T	Gcc	Acc	2	2	AY.103	0.000012
ORF7a	79	A79V	gCc	gTc	2	2	AY.106	0.00067
ORF7a	79	A79A	gcC	gcT	2	2	AY.106	0.00067
ORF7a	79	A79del	GCC	---	2	2	AY.108	0.002205
ORF7a	79	A79del	GCC	---	2	2	AY.109	0.001479
ORF7a	79	A79del1	Gcc	-cc	2	2	AY.113	0.000285
ORF7a	79	A79A	gcC	gcA	2	2	AY.114	0.000462
ORF7a	79	A79A	gcC	gcT	2	2	AY.116.1	0.000623
ORF7a	79	A79del1	Gcc	-cc	2	2	AY.117	0.000169
ORF7a	79	A79D	gCc	gAc	2	2	AY.117	0.000169
ORF7a	79	A79V	gCc	gTc	2	2	AY.119	0.000071
ORF7a	79	A79D	gCc	gAc	2	2	AY.12	0.000632
ORF7a	79	A79del1	Gcc	-cc	2	2	AY.121	0.000271
ORF7a	79	A79del1	Gcc	-cc	2	2	AY.19	0.002281
ORF7a	79	A79del	GCC	---	2	2	AY.19	0.002281
ORF7a	79	A79del2	GCc	--c	2	2	AY.20	0.000078
ORF7a	79	A79A	gcC	gcT	2	2	AY.23.1	0.000835
ORF7a	79	A79del2	gCC	g--	2	2	AY.25	0.000012
ORF7a	79	A79del	GCC	---	2	2	AY.27	0.000129
ORF7a	79	A79D	gCc	gAc	2	2	AY.29	0.000032
ORF7a	79	A79V	gCc	gTc	2	2	AY.29	0.000032
ORF7a	79	A79D	gCc	gAc	2	2	AY.32	0.001065
ORF7a	79	A79A	gcC	gcT	2	2	AY.32	0.001065
ORF7a	79	A79del1	Gcc	-cc	2	2	AY.33	0.000134
ORF7a	79	A79S	Gcc	Tcc	2	2	AY.33	0.000134
ORF7a	79	A79del	GCC	---	2	2	AY.34.1	0.00102
ORF7a	79	A79del1	Gcc	-cc	2	2	AY.34.1	0.00102
ORF7a	79	A79T	Gcc	Acc	2	2	AY.39	0.000049
ORF7a	79	A79G	gCc	gGc	1	2	AY.4	0.000002
ORF7a	79	A79G	gCC	gGA	1	2	AY.4	0.000002
ORF7a	79	A79del1	Gcc	-cc	2	2	AY.4.1	0.001475
ORF7a	79	A79S	Gcc	Tcc	2	2	AY.4.2	0.000043
ORF7a	79	A79del	GCC	---	2	2	AY.4.2.1	0.000298
ORF7a	79	A79del	GCC	---	2	2	AY.4.4	0.000818
ORF7a	79	A79P	Gcc	Ccc	2	2	AY.42	0.00008
ORF7a	79	A79T	Gcc	Acc	2	2	AY.42	0.00008
ORF7a	79	A79del	GCC	---	2	2	AY.46	0.000208
ORF7a	79	A79del1	Gcc	-cc	2	2	AY.46	0.000208
ORF7a	79	A79del2	GCc	--c	2	2	AY.46	0.000208
ORF7a	79	A79A	gcC	gcT	2	2	AY.46.2	0.001271
ORF7a	79	A79S	Gcc	Tcc	2	2	AY.46.4	0.000329
ORF7a	79	A79V	gCc	gTc	2	2	AY.46.5	0.000397
ORF7a	79	A79T	Gcc	Acc	2	2	AY.47	0.000062
ORF7a	79	A79del	GCC	---	2	2	AY.48	0.00093
ORF7a	79	A79D	gCc	gAc	2	2	AY.49	0.00639
ORF7a	79	A79del1	Gcc	-cc	2	2	AY.5	0.000041
ORF7a	79	A79del	GCC	---	2	2	AY.5.3	0.000675
ORF7a	79	A79del	GCC	---	2	2	AY.53	0.000575
ORF7a	79	A79A	gcC	gcT	2	2	AY.63	0.000774
ORF7a	79	A79D	gCc	gAc	2	2	AY.64	0.00119
ORF7a	79	A79del	GCC	---	2	2	AY.65	0.001066
ORF7a	79	A79del1	Gcc	-cc	2	2	AY.66	0.002139
ORF7a	79	A79del1	GCc	-Ac	2	2	AY.7.2	0.001119
ORF7a	79	A79Y	GCc	TAc	2	2	AY.7.2	0.001119
ORF7a	79	A79A	gcC	gcA	1	2	AY.77	0.001127
ORF7a	79	A79A	gcC	gcT	1	2	AY.77	0.001127
ORF7a	79	A79V	gCc	gTc	2	2	AY.78	0.003082
ORF7a	79	A79S	Gcc	Tcc	2	2	AY.86	0.00166
ORF7a	79	A79A	gcC	gcT	2	2	AY.87	0.001665
ORF7a	79	A79del	GCC	---	2	2	AY.87	0.001665
ORF7a	79	A79del1	Gcc	-cc	2	2	AY.88	0.001768
ORF7a	79	A79del	GCC	---	2	2	AY.9.1	0.000167
ORF7a	79	A79V	gCc	gTc	2	2	AY.9.2	0.000073
ORF7a	79	A79del	GCC	---	2	2	AY.91	0.001461
ORF7a	79	A79D	gCc	gAc	2	2	AY.92	0.000575
ORF7a	79	A79D	gCc	gAc	2	2	AY.98	0.000158
ORF7a	79	A79del	GCC	---	2	2	AY.99	0.002099
ORF7a	79	A79D	gCc	gAc	2	2	AY.99.1	0.003106
ORF7a	79	A79del	GCC	---	2	2	B	0.000256
ORF7a	79	A79D	gCc	gAc	2	2	B.1	0.000018
ORF7a	79	A79A	gcC	gcT	2	2	B.1.1.10	0.00223
ORF7a	79	A79del	GCC	---	2	2	B.1.1.101	0.02
ORF7a	79	A79del	GCC	---	2	2	B.1.1.170	0.002494
ORF7a	79	A79T	Gcc	Acc	2	2	B.1.1.180	0.021505
ORF7a	79	A79del	GCC	---	2	2	B.1.1.220	0.003717
ORF7a	79	A79del	GCC	---	2	2	B.1.1.25	0.001137
ORF7a	79	A79A	gcC	gcT	2	2	B.1.1.253	0.005013
ORF7a	79	A79A	gcC	gcT	2	2	B.1.1.269	0.002706
ORF7a	79	A79A	gcC	gcT	2	2	B.1.1.306	0.000877
ORF7a	79	A79A	gcC	gcT	2	2	B.1.1.389	0.012121
ORF7a	79	A79S	Gcc	Tcc	2	2	B.1.1.39	0.001019
ORF7a	79	A79A	gcC	gcT	2	2	B.1.1.407	0.083333
ORF7a	79	A79A	gcC	gcT	2	2	B.1.1.464	0.002946
ORF7a	79	A79del	GCC	---	2	2	B.1.1.521	0.010695
ORF7a	79	A79A	gcC	gcA	2	2	B.1.1.523	0.003125
ORF7a	79	A79P	Gcc	Ccc	2	2	B.1.1.7	0.000002
ORF7a	79	A79A	gcC	gcT	2	2	B.1.1.72	0.060606
ORF7a	79	A79T	Gcc	Acc	2	2	B.1.160	0.000062
ORF7a	79	A79del	GCC	---	2	2	B.1.177.15	0.001262
ORF7a	79	A79A	gcC	gcT	2	2	B.1.177.23	0.006472
ORF7a	79	A79A	gcC	gcT	2	2	B.1.177.4	0.000422
ORF7a	79	A79del2	GCc	--c	2	2	B.1.177.4	0.000422
ORF7a	79	A79del	GCC	---	2	2	B.1.177.55	0.004662
ORF7a	79	A79A	gcC	gcT	2	2	B.1.177.55	0.004662
ORF7a	79	A79A	gcC	gcT	2	2	B.1.177.57	0.000562
ORF7a	79	A79del	GCC	---	2	2	B.1.177.57	0.000562
ORF7a	79	A79del	GCC	---	2	2	B.1.177.60	0.000437
ORF7a	79	A79del	GCC	---	2	2	B.1.177.7	0.00033
ORF7a	79	A79S	Gcc	Tcc	2	2	B.1.177.77	0.001452
ORF7a	79	A79del	GCC	---	2	2	B.1.177.81	0.000379
ORF7a	79	A79del	GCC	---	2	2	B.1.177.86	0.000367
ORF7a	79	A79del2	GCc	--c	2	2	B.1.2	0.000018
ORF7a	79	A79A	gcC	gcA	1	2	B.1.206	0.000816
ORF7a	79	A79A	gcC	gcT	1	2	B.1.206	0.000816
ORF7a	79	A79A	gcC	gcA	2	2	B.1.214.2	0.001199
ORF7a	79	A79del	GCC	---	2	2	B.1.221	0.000142
ORF7a	79	A79P	Gcc	Ccc	2	2	B.1.221.4	0.008333
ORF7a	79	A79del	GCC	---	2	2	B.1.240	0.000431
ORF7a	79	A79S	Gcc	Tcc	2	2	B.1.243	0.000139
ORF7a	79	A79del	GCC	---	2	2	B.1.258.11	0.000793
ORF7a	79	A79A	gcC	gcT	2	2	B.1.258.11	0.000793
ORF7a	79	A79A	gcC	gcT	2	2	B.1.258.14	0.001961
ORF7a	79	A79A	gcC	gcT	2	2	B.1.258.17	0.000208
ORF7a	79	A79A	gcC	gcT	2	2	B.1.320	0.002491
ORF7a	79	A79A	gcC	gcT	2	2	B.1.336	0.004878
ORF7a	79	A79A	gcC	gcT	2	2	B.1.349	0.00143
ORF7a	79	A79del	GCC	---	2	2	B.1.36	0.000292
ORF7a	79	A79A	gcC	gcT	2	2	B.1.36.38	0.003284
ORF7a	79	A79V	gCc	gTc	2	2	B.1.411	0.007407
ORF7a	79	A79A	gcC	gcT	2	2	B.1.416.1	0.003125
ORF7a	79	A79S	Gcc	Tcc	2	2	B.1.429	0.000047
ORF7a	79	A79A	gcC	gcT	2	2	B.1.466.2	0.000782
ORF7a	79	A79E	gCC	gAG	1	2	B.1.497	0.000315
ORF7a	79	A79E	gCC	gAA	1	2	B.1.497	0.000315
ORF7a	79	A79del	GCC	---	2	2	B.1.499	0.002101
ORF7a	79	A79A	gcC	gcT	2	2	B.1.517	0.000854
ORF7a	79	A79del	GCC	---	2	2	B.1.517.1	0.010526
ORF7a	79	A79D	gCc	gAc	2	2	B.1.525	0.000226
ORF7a	79	A79A	gcC	gcT	2	2	B.1.564	0.000852
ORF7a	79	A79del2	GCc	--c	1	2	B.1.617.2	0.000004
ORF7a	79	A79del2	gCC	g--	1	2	B.1.617.2	0.000004
ORF7a	79	A79del	GCC	---	2	2	B.1.621.1	0.001012
ORF7a	79	A79V	gCc	gTc	2	2	B.6	0.00182
ORF7a	79	A79del1	gcC	gc-	1	2	C.37	0.000116
ORF7a	79	A79del1	Gcc	-cc	1	2	C.37	0.000116
ORF7a	79	A79A	gcC	gcT	1	2	D.2	0.000075
ORF7a	79	A79A	gcC	gcG	1	2	D.2	0.000075
ORF7a	79	A79V	gCc	gTc	2	2	P.1.10	0.000539
ORF7a	79	A79A	gcC	gcT	2	2	P.1.12	0.000968
ORF7a	79	A79del2	GCc	--c	2	2	P.1.14	0.000096
ORF7a	79	A79V	gCc	gTc	2	2	P.1.14	0.000096
ORF7a	79	A79del	GCC	---	2	2	P.1.14	0.000096
ORF7a	79	A79A	gcC	gcT	2	2	P.1.17	0.000324
ORF7a	79	A79A	gcC	gcT	2	2	P.1.9	0.009615
ORF7a	79	A79A	gcC	gcT	2	2	Q.1	0.000253
ORF7a	79	A79del2	gCC	g--	1	2	Q.8	0.000165
ORF7a	79	A79del2	GCc	--c	1	2	Q.8	0.000165
ORF7a	79	A79A	gcC	gcT	1	1	A	0.000387
ORF7a	79	A79S	Gcc	Tcc	1	1	A.1	0.000282
ORF7a	79	A79del	GCC	---	1	1	A.1	0.000282
ORF7a	79	A79V	gCc	gTc	1	1	A.19	0.009434
ORF7a	79	A79A	gcC	gcT	1	1	A.19	0.009434
ORF7a	79	A79A	gcC	gcT	1	1	A.2	0.000662
ORF7a	79	A79del	GCC	---	1	1	A.2.2	0.001689
ORF7a	79	A79S	Gcc	Tcc	1	1	A.2.5	0.000499
ORF7a	79	A79del	GCC	---	1	1	A.23	0.010526
ORF7a	79	A79del	GCC	---	1	1	A.23.1	0.000704
ORF7a	79	A79A	gcC	gcT	1	1	A.28	0.002646
ORF7a	79	A79W	GCC	TGG	1	1	All	0
ORF7a	79	A79A	gcC	gcT	1	1	AP.1	0.001502
ORF7a	79	A79V	gCc	gTc	1	1	AS.2	0.015625
ORF7a	79	A79del	GCC	---	1	1	AU.3	0.00211
ORF7a	79	A79S	Gcc	Tcc	1	1	AY.10	0.00053
ORF7a	79	A79C	GCc	TGc	1	1	AY.100	0.000046
ORF7a	79	A79del1	Gcc	-cc	1	1	AY.100	0.000046
ORF7a	79	A79V	gCc	gTc	1	1	AY.100	0.000046
ORF7a	79	A79G	gCc	gGc	1	1	AY.100	0.000046
ORF7a	79	A79del	GCC	---	1	1	AY.101	0.00049
ORF7a	79	A79A	gcC	gcT	1	1	AY.101	0.00049
ORF7a	79	A79D	gCc	gAc	1	1	AY.102	0.000027
ORF7a	79	A79del2	gCC	g--	1	1	AY.103	0.000006
ORF7a	79	A79A	gcC	gcT	1	1	AY.104	0.001984
ORF7a	79	A79S	Gcc	Tcc	1	1	AY.106	0.000335
ORF7a	79	A79A	gcC	gcT	1	1	AY.107	0.000466
ORF7a	79	A79D	gCc	gAc	1	1	AY.108	0.001103
ORF7a	79	A79S	Gcc	Tcc	1	1	AY.108	0.001103
ORF7a	79	A79A	gcC	gcT	1	1	AY.109	0.00074
ORF7a	79	A79S	Gcc	Tcc	1	1	AY.11	0.001339
ORF7a	79	A79A	gcC	gcT	1	1	AY.110	0.000113
ORF7a	79	A79S	Gcc	Tcc	1	1	AY.111	0.000183
ORF7a	79	A79del	GCC	---	1	1	AY.111	0.000183
ORF7a	79	A79del1	Gcc	-cc	1	1	AY.114	0.000231
ORF7a	79	A79S	Gcc	Tcc	1	1	AY.114	0.000231
ORF7a	79	A79del1	Gcc	-cc	1	1	AY.116	0.000287
ORF7a	79	A79S	Gcc	Tcc	1	1	AY.116	0.000287
ORF7a	79	A79del	GCC	---	1	1	AY.116.1	0.000311
ORF7a	79	A79P	Gcc	Ccc	1	1	AY.117	0.000085
ORF7a	79	A79P	Gcc	Ccc	1	1	AY.118	0.000063
ORF7a	79	A79del	GCC	---	1	1	AY.12	0.000316
ORF7a	79	A79V	gCc	gTc	1	1	AY.120	0.000037
ORF7a	79	A79G	gCC	gGA	1	1	AY.120	0.000037
ORF7a	79	A79D	gCc	gAc	1	1	AY.120	0.000037
ORF7a	79	A79Y	GCC	TAT	1	1	AY.120.1	0.000321
ORF7a	79	A79S	Gcc	Tcc	1	1	AY.120.1	0.000321
ORF7a	79	A79A	gcC	gcA	1	1	AY.120.1	0.000321
ORF7a	79	A79V	gCc	gTc	1	1	AY.13	0.000161
ORF7a	79	A79A	gcC	gcT	1	1	AY.13	0.000161
ORF7a	79	A79V	gCc	gTc	1	1	AY.14	0.000088
ORF7a	79	A79del	GCC	---	1	1	AY.16	0.00038
ORF7a	79	A79A	gcC	gcT	1	1	AY.16	0.00038
ORF7a	79	A79D	gCc	gAc	1	1	AY.17	0.008197
ORF7a	79	A79V	gCc	gTc	1	1	AY.20	0.000039
ORF7a	79	A79T	Gcc	Acc	1	1	AY.20	0.000039
ORF7a	79	A79S	Gcc	Tcc	1	1	AY.22	0.002092
ORF7a	79	A79del1	Gcc	-cc	1	1	AY.22	0.002092
ORF7a	79	A79S	Gcc	Tcc	1	1	AY.25	0.000006
ORF7a	79	A79V	gCc	gTc	1	1	AY.26	0.000028
ORF7a	79	A79del2	GCc	--c	1	1	AY.26	0.000028
ORF7a	79	A79S	Gcc	Tcc	1	1	AY.26	0.000028
ORF7a	79	A79S	Gcc	Tcc	1	1	AY.27	0.000065
ORF7a	79	A79S	Gcc	Tcc	1	1	AY.29	0.000016
ORF7a	79	A79del2	GCc	--c	1	1	AY.3	0.00001
ORF7a	79	A79A	gcC	gcT	1	1	AY.30	0.000396
ORF7a	79	A79V	gCc	gTc	1	1	AY.32	0.000532
ORF7a	79	A79V	gCc	gTc	1	1	AY.33	0.000067
ORF7a	79	A79del2	gCC	g--	1	1	AY.34	0.000097
ORF7a	79	A79A	gcC	gcA	1	1	AY.34.1	0.00051
ORF7a	79	A79T	Gcc	Acc	1	1	AY.35	0.000233
ORF7a	79	A79del1	Gcc	-cc	1	1	AY.36	0.000148
ORF7a	79	A79A	gcC	gcT	1	1	AY.36	0.000148
ORF7a	79	A79A	gcC	gcT	1	1	AY.37	0.000316
ORF7a	79	A79V	gCc	gTc	1	1	AY.37	0.000316
ORF7a	79	A79A	gcC	gcT	1	1	AY.38	0.000499
ORF7a	79	A79del	GCC	---	1	1	AY.38	0.000499
ORF7a	79	A79D	gCc	gAc	1	1	AY.38	0.000499
ORF7a	79	A79P	Gcc	Ccc	1	1	AY.39	0.000025
ORF7a	79	A79D	gCc	gAc	1	1	AY.39	0.000025
ORF7a	79	A79del2	GCc	--c	1	1	AY.39.1	0.00004
ORF7a	79	A79del	GCC	---	1	1	AY.4.1	0.000737
ORF7a	79	A79V	gCc	gTc	1	1	AY.4.2	0.000022
ORF7a	79	A79A	gcC	gcA	1	1	AY.4.3	0.000842
ORF7a	79	A79V	gCc	gTc	1	1	AY.4.3	0.000842
ORF7a	79	A79D	gCc	gAc	1	1	AY.4.4	0.000409
ORF7a	79	A79S	Gcc	Tcc	1	1	AY.41	0.000294
ORF7a	79	A79V	gCc	gTc	1	1	AY.42	0.00004
ORF7a	79	A79S	Gcc	Tcc	1	1	AY.42	0.00004
ORF7a	79	A79del2	GCC	--N	1	1	AY.43	0.000004
ORF7a	79	A79D	gCc	gAc	1	1	AY.46	0.000104
ORF7a	79	A79S	Gcc	Tcc	1	1	AY.46.2	0.000635
ORF7a	79	A79S	Gcc	Tcc	1	1	AY.46.3	0.000934
ORF7a	79	A79A	gcC	gcT	1	1	AY.46.4	0.000165
ORF7a	79	A79del	GCC	---	1	1	AY.46.5	0.000198
ORF7a	79	A79D	gCc	gAc	1	1	AY.48	0.000465
ORF7a	79	A79S	Gcc	Tcc	1	1	AY.48	0.000465
ORF7a	79	A79V	gCc	gTc	1	1	AY.5	0.000021
ORF7a	79	A79A	gcC	gcT	1	1	AY.5.1	0.003759
ORF7a	79	A79A	gcC	gcT	1	1	AY.5.4	0.000277
ORF7a	79	A79del	GCC	---	1	1	AY.52	0.000814
ORF7a	79	A79A	gcC	gcA	1	1	AY.52	0.000814
ORF7a	79	A79A	gcC	gcT	1	1	AY.53	0.000288
ORF7a	79	A79del1	Gcc	-cc	1	1	AY.53	0.000288
ORF7a	79	A79V	gCc	gTc	1	1	AY.53	0.000288
ORF7a	79	A79T	GcC	AcG	1	1	AY.54	0.000095
ORF7a	79	A79D	gCc	gAc	1	1	AY.56	0.001605
ORF7a	79	A79S	Gcc	Tcc	1	1	AY.58	0.000907
ORF7a	79	A79A	gcC	gcG	1	1	AY.59	0.00053
ORF7a	79	A79del	GCC	---	1	1	AY.59	0.00053
ORF7a	79	A79A	gcC	gcT	1	1	AY.6	0.000041
ORF7a	79	A79V	gCc	gTc	1	1	AY.6	0.000041
ORF7a	79	A79P	GcC	CcA	1	1	AY.61	0.000105
ORF7a	79	A79del	GCC	---	1	1	AY.62	0.000436
ORF7a	79	A79S	Gcc	Tcc	1	1	AY.63	0.000387
ORF7a	79	A79del1	Gcc	-cc	1	1	AY.65	0.000533
ORF7a	79	A79A	gcC	gcT	1	1	AY.65	0.000533
ORF7a	79	A79del	GCC	---	1	1	AY.66	0.00107
ORF7a	79	A79S	Gcc	Tcc	1	1	AY.68	0.000274
ORF7a	79	A79del	GCC	---	1	1	AY.68	0.000274
ORF7a	79	A79D	gCc	gAc	1	1	AY.69	0.000187
ORF7a	79	A79del	GCC	---	1	1	AY.69	0.000187
ORF7a	79	A79A	gcC	gcA	1	1	AY.7	0.000196
ORF7a	79	A79Y	GCc	TAc	1	1	AY.7	0.000196
ORF7a	79	A79del1	GCc	-Ac	1	1	AY.7	0.000196
ORF7a	79	A79Y	GCc	TAc	1	1	AY.7.1	0.000113
ORF7a	79	A79del	GCC	---	1	1	AY.70	0.000209
ORF7a	79	A79A	gcC	gcA	1	1	AY.71	0.000475
ORF7a	79	A79S	Gcc	Tcc	1	1	AY.71	0.000475
ORF7a	79	A79del	GCC	---	1	1	AY.73	0.000665
ORF7a	79	A79del1	Gcc	-cc	1	1	AY.73	0.000665
ORF7a	79	A79P	Gcc	Ccc	1	1	AY.75	0.000056
ORF7a	79	A79T	Gcc	Acc	1	1	AY.75	0.000056
ORF7a	79	A79V	gCc	gTc	1	1	AY.75	0.000056
ORF7a	79	A79A	gcC	gcT	1	1	AY.78	0.001541
ORF7a	79	A79A	gcC	gcT	1	1	AY.79	0.001211
ORF7a	79	A79del1	Gcc	-cc	1	1	AY.81	0.001992
ORF7a	79	A79S	Gcc	Tcc	1	1	AY.82	0.001357
ORF7a	79	A79del	GCC	---	1	1	AY.84	0.000437
ORF7a	79	A79S	Gcc	Tcc	1	1	AY.84	0.000437
ORF7a	79	A79V	gCc	gTc	1	1	AY.85	0.000427
ORF7a	79	A79del1	Gcc	-cc	1	1	AY.85	0.000427
ORF7a	79	A79del	GCC	---	1	1	AY.85	0.000427
ORF7a	79	A79A	gcC	gcT	1	1	AY.86	0.00083
ORF7a	79	A79D	gCc	gAc	1	1	AY.86	0.00083
ORF7a	79	A79S	Gcc	Tcc	1	1	AY.87	0.000833
ORF7a	79	A79S	Gcc	Tcc	1	1	AY.88	0.000884
ORF7a	79	A79P	Gcc	Ccc	1	1	AY.89	0.004902
ORF7a	79	A79V	gCc	gTc	1	1	AY.9	0.000068
ORF7a	79	A79D	gCc	gAc	1	1	AY.9	0.000068
ORF7a	79	A79A	gcC	gcT	1	1	AY.9.1	0.000084
ORF7a	79	A79D	gCc	gAc	1	1	AY.9.1	0.000084
ORF7a	79	A79S	Gcc	Tcc	1	1	AY.9.1	0.000084
ORF7a	79	A79D	gCc	gAc	1	1	AY.9.2	0.000037
ORF7a	79	A79S	Gcc	Tcc	1	1	AY.9.2	0.000037
ORF7a	79	A79D	gCc	gAc	1	1	AY.90	0.000684
ORF7a	79	A79del1	Gcc	-cc	1	1	AY.90	0.000684
ORF7a	79	A79A	gcC	gcT	1	1	AY.91	0.00073
ORF7a	79	A79D	gCc	gAc	1	1	AY.93	0.000273
ORF7a	79	A79A	gcC	gcT	1	1	AY.94	0.000443
ORF7a	79	A79del	GCC	---	1	1	AY.95	0.000761
ORF7a	79	A79D	gCc	gAc	1	1	AY.95	0.000761
ORF7a	79	A79del1	Gcc	-cc	1	1	AY.95	0.000761
ORF7a	79	A79A	gcC	gcA	1	1	AY.95	0.000761
ORF7a	79	A79P	Gcc	Ccc	1	1	AY.98	0.000079
ORF7a	79	A79del2	gCC	g--	1	1	AY.98	0.000079
ORF7a	79	A79V	gCc	gTc	1	1	AY.98	0.000079
ORF7a	79	A79del2	GCc	--c	1	1	AY.98.1	0.000048
ORF7a	79	A79V	gCc	gTc	1	1	AY.98.1	0.000048
ORF7a	79	A79D	gCc	gAc	1	1	AY.99	0.001049
ORF7a	79	A79A	gcC	gcT	1	1	AZ.1	0.000867
ORF7a	79	A79del	GCC	---	1	1	AZ.2	0.000821
ORF7a	79	A79V	gCc	gTc	1	1	B	0.000128
ORF7a	79	A79D	gCc	gAc	1	1	B	0.000128
ORF7a	79	A79T	Gcc	Acc	1	1	B.1	0.000009
ORF7a	79	A79P	Gcc	Ccc	1	1	B.1	0.000009
ORF7a	79	A79del2	GCc	--c	1	1	B.1	0.000009
ORF7a	79	A79P	Gcc	Ccc	1	1	B.1.1	0.000018
ORF7a	79	A79V	gCc	gTc	1	1	B.1.1.121	0.002427
ORF7a	79	A79del2	GCc	--c	1	1	B.1.1.135	0.004695
ORF7a	79	A79A	gcC	gcT	1	1	B.1.1.153	0.001095
ORF7a	79	A79V	gCc	gTc	1	1	B.1.1.157	0.000913
ORF7a	79	A79del	GCC	---	1	1	B.1.1.174	0.003378
ORF7a	79	A79V	gCc	gTc	1	1	B.1.1.176	0.000439
ORF7a	79	A79V	gCC	gTT	1	1	B.1.1.189	0.001513
ORF7a	79	A79del	GCC	---	1	1	B.1.1.192	0.002309
ORF7a	79	A79del	GCC	---	1	1	B.1.1.194	0.00495
ORF7a	79	A79A	gcC	gcT	1	1	B.1.1.196	0.005714
ORF7a	79	A79A	gcC	gcT	1	1	B.1.1.198	0.001468
ORF7a	79	A79del	GCC	---	1	1	B.1.1.205	0.003717
ORF7a	79	A79del	GCC	---	1	1	B.1.1.207	0.001182
ORF7a	79	A79T	Gcc	Acc	1	1	B.1.1.214	0.000055
ORF7a	79	A79A	gcC	gcT	1	1	B.1.1.216	0.00089
ORF7a	79	A79A	gcC	gcT	1	1	B.1.1.219	0.005
ORF7a	79	A79A	gcC	gcA	1	1	B.1.1.220	0.001859
ORF7a	79	A79V	gCC	gTT	1	1	B.1.1.25	0.000569
ORF7a	79	A79A	gcC	gcT	1	1	B.1.1.258	0.003257
ORF7a	79	A79del	GCC	---	1	1	B.1.1.265	0.003155
ORF7a	79	A79S	Gcc	Tcc	1	1	B.1.1.27	0.00565
ORF7a	79	A79A	gcC	gcT	1	1	B.1.1.272	0.005208
ORF7a	79	A79del	GCC	---	1	1	B.1.1.277	0.000759
ORF7a	79	A79V	gCC	gTT	1	1	B.1.1.282	0.011628
ORF7a	79	A79S	Gcc	Tcc	1	1	B.1.1.284	0.000107
ORF7a	79	A79V	gCc	gTc	1	1	B.1.1.291	0.000742
ORF7a	79	A79A	gcC	gcA	1	1	B.1.1.297	0.002237
ORF7a	79	A79del	GCC	---	1	1	B.1.1.301	0.001179
ORF7a	79	A79A	gcC	gcT	1	1	B.1.1.302	0.002075
ORF7a	79	A79del	GCC	---	1	1	B.1.1.303	0.002762
ORF7a	79	A79V	gCC	gTT	1	1	B.1.1.305	0.003861
ORF7a	79	A79V	gCc	gTc	1	1	B.1.1.306	0.000438
ORF7a	79	A79A	gcC	gcT	1	1	B.1.1.309	0.005848
ORF7a	79	A79A	gcC	gcT	1	1	B.1.1.312	0.001912
ORF7a	79	A79A	gcC	gcT	1	1	B.1.1.315	0.008475
ORF7a	79	A79A	gcC	gcA	1	1	B.1.1.317	0.000412
ORF7a	79	A79del	GCC	---	1	1	B.1.1.317	0.000412
ORF7a	79	A79A	gcC	gcT	1	1	B.1.1.318	0.000302
ORF7a	79	A79del	GCC	---	1	1	B.1.1.318	0.000302
ORF7a	79	A79V	gCc	gTc	1	1	B.1.1.326	0.001761
ORF7a	79	A79A	gcC	gcT	1	1	B.1.1.326	0.001761
ORF7a	79	A79del	GCC	---	1	1	B.1.1.33	0.000421
ORF7a	79	A79del	GCC	---	1	1	B.1.1.336	0.016667
ORF7a	79	A79A	gcC	gcT	1	1	B.1.1.344	0.010753
ORF7a	79	A79A	gcC	gcA	1	1	B.1.1.358	0.034483
ORF7a	79	A79del	GCC	---	1	1	B.1.1.366	0.015873
ORF7a	79	A79del2	GCc	--c	1	1	B.1.1.37	0.000193
ORF7a	79	A79V	gCc	gTc	1	1	B.1.1.37	0.000193
ORF7a	79	A79S	Gcc	Tcc	1	1	B.1.1.37	0.000193
ORF7a	79	A79A	gcC	gcT	1	1	B.1.1.372	0.000689
ORF7a	79	A79S	Gcc	Tcc	1	1	B.1.1.375	0.011905
ORF7a	79	A79P	Gcc	Ccc	1	1	B.1.1.39	0.00051
ORF7a	79	A79S	Gcc	Tcc	1	1	B.1.1.398	0.003226
ORF7a	79	A79A	gcC	gcT	1	1	B.1.1.404	0.015873
ORF7a	79	A79A	gcC	gcA	1	1	B.1.1.41	0.006329
ORF7a	79	A79G	gCc	gGc	1	1	B.1.1.411	0.014706
ORF7a	79	A79S	Gcc	Tcc	1	1	B.1.1.432	0.001266
ORF7a	79	A79del	GCC	---	1	1	B.1.1.434	0.000349
ORF7a	79	A79del	GCC	---	1	1	B.1.1.437	0.010417
ORF7a	79	A79del	GCC	---	1	1	B.1.1.448	0.002033
ORF7a	79	A79del1	Gcc	-cc	1	1	B.1.1.519	0.00004
ORF7a	79	A79S	Gcc	Tcc	1	1	B.1.1.519	0.00004
ORF7a	79	A79A	gcC	gcT	1	1	B.1.1.525	0.005464
ORF7a	79	A79A	gcC	gcT	1	1	B.1.1.54	0.003021
ORF7a	79	A79A	gcC	gcT	1	1	B.1.1.63	0.000386
ORF7a	79	A79F	GCc	TTc	1	1	B.1.1.7	0.000001
ORF7a	79	A79N	GCC	AAT	1	1	B.1.1.7	0.000001
ORF7a	79	A79V	gCc	gTc	1	1	B.1.1.70	0.000341
ORF7a	79	A79del	GCC	---	1	1	B.1.1.70	0.000341
ORF7a	79	A79del	GCC	---	1	1	B.1.115	0.021739
ORF7a	79	A79A	gcC	gcG	1	1	B.1.159	0.012195
ORF7a	79	A79S	Gcc	Tcc	1	1	B.1.160	0.000031
ORF7a	79	A79V	gCc	gTc	1	1	B.1.160	0.000031
ORF7a	79	A79W	GCC	TGG	1	1	B.1.177	0.000013
ORF7a	79	A79D	gCc	gAc	1	1	B.1.177	0.000013
ORF7a	79	A79del	GCC	---	1	1	B.1.177.10	0.000878
ORF7a	79	A79V	gCc	gTc	1	1	B.1.177.15	0.000631
ORF7a	79	A79A	gcC	gcT	1	1	B.1.177.20	0.001517
ORF7a	79	A79N	GCc	AAc	1	1	B.1.177.21	0.000076
ORF7a	79	A79V	gCc	gTc	1	1	B.1.177.21	0.000076
ORF7a	79	A79I	GCC	ATA	1	1	B.1.177.21	0.000076
ORF7a	79	A79del	GCC	---	1	1	B.1.177.31	0.011494
ORF7a	79	A79S	Gcc	Tcc	1	1	B.1.177.4	0.000211
ORF7a	79	A79del	GCC	---	1	1	B.1.177.4	0.000211
ORF7a	79	A79V	gCc	gTc	1	1	B.1.177.43	0.001477
ORF7a	79	A79A	gcC	gcT	1	1	B.1.177.5	0.001242
ORF7a	79	A79del	GCC	---	1	1	B.1.177.50	0.004695
ORF7a	79	A79T	Gcc	Acc	1	1	B.1.177.57	0.000281
ORF7a	79	A79del	GCC	---	1	1	B.1.177.6	0.000977
ORF7a	79	A79A	gcC	gcT	1	1	B.1.177.62	0.001192
ORF7a	79	A79del	GCC	---	1	1	B.1.177.62	0.001192
ORF7a	79	A79V	gCC	gTA	1	1	B.1.177.63	0.002703
ORF7a	79	A79D	gCc	gAc	1	1	B.1.177.73	0.000566
ORF7a	79	A79A	gcC	gcT	1	1	B.1.177.77	0.000726
ORF7a	79	A79V	gCc	gTc	1	1	B.1.177.81	0.000189
ORF7a	79	A79S	Gcc	Tcc	1	1	B.1.177.86	0.000183
ORF7a	79	A79D	gCc	gAc	1	1	B.1.221	0.000071
ORF7a	79	A79V	gCc	gTc	1	1	B.1.221	0.000071
ORF7a	79	A79del	GCC	---	1	1	B.1.221.1	0.002907
ORF7a	79	A79A	gcC	gcT	1	1	B.1.221.2	0.004016
ORF7a	79	A79A	gcC	gcT	1	1	B.1.23	0.006061
ORF7a	79	A79T	Gcc	Acc	1	1	B.1.234	0.000132
ORF7a	79	A79del	GCC	---	1	1	B.1.236	0.002053
ORF7a	79	A79V	gCc	gTc	1	1	B.1.236	0.002053
ORF7a	79	A79A	gcC	gcT	1	1	B.1.236	0.002053
ORF7a	79	A79V	gCc	gTc	1	1	B.1.240	0.000216
ORF7a	79	A79V	gCC	gTT	1	1	B.1.242	0.018868
ORF7a	79	A79del1	Gcc	-cc	1	1	B.1.243	0.00007
ORF7a	79	A79del	GCC	---	1	1	B.1.252	0.006623
ORF7a	79	A79N	GCC	AAT	1	1	B.1.258.9	0.005
ORF7a	79	A79del	GCC	---	1	1	B.1.265	0.001271
ORF7a	79	A79A	gcC	gcT	1	1	B.1.3	0.002618
ORF7a	79	A79A	gcC	gcA	1	1	B.1.301	0.005917
ORF7a	79	A79S	Gcc	Tcc	1	1	B.1.305	0.002151
ORF7a	79	A79V	gCc	gTc	1	1	B.1.311	0.000275
ORF7a	79	A79A	gcC	gcT	1	1	B.1.311	0.000275
ORF7a	79	A79del	GCC	---	1	1	B.1.319	0.003049
ORF7a	79	A79A	gcC	gcT	1	1	B.1.333	0.010526
ORF7a	79	A79V	gCc	gTc	1	1	B.1.349	0.000715
ORF7a	79	A79del	GCC	---	1	1	B.1.351.3	0.000876
ORF7a	79	A79V	gCC	gTT	1	1	B.1.36	0.000146
ORF7a	79	A79A	gcC	gcA	1	1	B.1.36.10	0.004785
ORF7a	79	A79A	gcC	gcT	1	1	B.1.36.16	0.001425
ORF7a	79	A79del	GCC	---	1	1	B.1.36.17	0.000494
ORF7a	79	A79A	gcC	gcT	1	1	B.1.36.24	0.006173
ORF7a	79	A79V	gCc	gTc	1	1	B.1.36.31	0.001751
ORF7a	79	A79del	GCC	---	1	1	B.1.36.31	0.001751
ORF7a	79	A79V	gCc	gTc	1	1	B.1.36.9	0.003215
ORF7a	79	A79V	gCc	gTc	1	1	B.1.362	0.001541
ORF7a	79	A79A	gcC	gcT	1	1	B.1.362	0.001541
ORF7a	79	A79del	GCC	---	1	1	B.1.371	0.001122
ORF7a	79	A79A	gcC	gcT	1	1	B.1.380	0.006623
ORF7a	79	A79A	gcC	gcT	1	1	B.1.395	0.007042
ORF7a	79	A79del	GCC	---	1	1	B.1.396	0.000706
ORF7a	79	A79del1	gCc	g-c	1	1	B.1.399	0.001934
ORF7a	79	A79A	gcC	gcT	1	1	B.1.400	0.000429
ORF7a	79	A79A	gcC	gcA	1	1	B.1.405	0.012346
ORF7a	79	A79del	GCC	---	1	1	B.1.406	0.006061
ORF7a	79	A79A	gcC	gcT	1	1	B.1.409	0.000781
ORF7a	79	A79D	gCc	gAc	1	1	B.1.416	0.001269
ORF7a	79	A79T	Gcc	Acc	1	1	B.1.416.1	0.001563
ORF7a	79	A79del	GCC	---	1	1	B.1.416.1	0.001563
ORF7a	79	A79P	Gcc	Ccc	1	1	B.1.416.1	0.001563
ORF7a	79	A79A	gcC	gcT	1	1	B.1.422	0.000812
ORF7a	79	A79T	Gcc	Acc	1	1	B.1.429	0.000024
ORF7a	79	A79V	gCC	gTT	1	1	B.1.438	0.006536
ORF7a	79	A79V	gCc	gTc	1	1	B.1.444	0.015873
ORF7a	79	A79A	gcC	gcT	1	1	B.1.446	0.02
ORF7a	79	A79A	gcC	gcT	1	1	B.1.456	0.003268
ORF7a	79	A79del	GCC	---	1	1	B.1.459	0.004082
ORF7a	79	A79del	GCC	---	1	1	B.1.466.2	0.000391
ORF7a	79	A79del	GCC	---	1	1	B.1.468	0.005714
ORF7a	79	A79V	gCC	gTT	1	1	B.1.469	0.00361
ORF7a	79	A79del	GCC	---	1	1	B.1.470	0.001404
ORF7a	79	A79A	gcC	gcA	1	1	B.1.470	0.001404
ORF7a	79	A79S	Gcc	Tcc	1	1	B.1.497	0.000315
ORF7a	79	A79A	gcC	gcT	1	1	B.1.498	0.020408
ORF7a	79	A79A	gcC	gcT	1	1	B.1.509	0.000866
ORF7a	79	A79V	gCc	gTc	1	1	B.1.509	0.000866
ORF7a	79	A79S	Gcc	Tcc	1	1	B.1.509	0.000866
ORF7a	79	A79A	gcC	gcT	1	1	B.1.524	0.001406
ORF7a	79	A79V	gCC	gTT	1	1	B.1.525	0.000113
ORF7a	79	A79A	gcC	gcA	1	1	B.1.527	0.003704
ORF7a	79	A79del	GCC	---	1	1	B.1.535	0.028571
ORF7a	79	A79A	gcC	gcT	1	1	B.1.540	0.009709
ORF7a	79	A79A	gcC	gcT	1	1	B.1.560	0.00463
ORF7a	79	A79del	GCC	---	1	1	B.1.564.1	0.001577
ORF7a	79	A79D	gCc	gAc	1	1	B.1.564.1	0.001577
ORF7a	79	A79del	GCC	---	1	1	B.1.568	0.001111
ORF7a	79	A79A	gcC	gcG	1	1	B.1.575	0.000303
ORF7a	79	A79del	GCC	---	1	1	B.1.576	0.000907
ORF7a	79	A79A	gcC	gcT	1	1	B.1.580	0.004065
ORF7a	79	A79del	GCC	---	1	1	B.1.582	0.000491
ORF7a	79	A79A	gcC	gcT	1	1	B.1.585	0.027778
ORF7a	79	A79A	gcC	gcT	1	1	B.1.588	0.00091
ORF7a	79	A79S	Gcc	Tcc	1	1	B.1.596	0.000087
ORF7a	79	A79V	gCc	gTc	1	1	B.1.596	0.000087
ORF7a	79	A79A	gcC	gcT	1	1	B.1.598	0.016949
ORF7a	79	A79C	GCc	TGc	1	1	B.1.609	0.000479
ORF7a	79	A79del	GCC	---	1	1	B.1.617.1	0.000129
ORF7a	79	A79F	GCc	TTc	1	1	B.1.617.2	0.000004
ORF7a	79	A79A	gcC	gcA	1	1	B.1.628	0.000352
ORF7a	79	A79del	GCC	---	1	1	B.1.628	0.000352
ORF7a	79	A79S	Gcc	Tcc	1	1	B.1.628	0.000352
ORF7a	79	A79S	Gcc	Tcc	1	1	B.1.630	0.005236
ORF7a	79	A79del	GCC	---	1	1	B.1.638	0.052632
ORF7a	79	A79del	GCC	---	1	1	B.1.88.1	0.004808
ORF7a	79	A79del	GCC	---	1	1	B.1.9.1	0.032258
ORF7a	79	A79del	GCC	---	1	1	B.1.93	0.000934
ORF7a	79	A79A	gcC	gcT	1	1	B.1.93	0.000934
ORF7a	79	A79A	gcC	gcT	1	1	B.40	0.000364
ORF7a	79	A79A	gcC	gcT	1	1	B.6	0.00091
ORF7a	79	A79V	gCc	gTc	1	1	B.6.6	0.000889
ORF7a	79	A79A	gcC	gcT	1	1	C.1	0.002392
ORF7a	79	A79V	gCc	gTc	1	1	C.1.2	0.004255
ORF7a	79	A79A	gcC	gcT	1	1	C.1.2	0.004255
ORF7a	79	A79S	Gcc	Tcc	1	1	C.36	0.000911
ORF7a	79	A79del	GCC	---	1	1	C.36.3	0.000567
ORF7a	79	A79T	Gcc	Acc	1	1	C.37	0.000116
ORF7a	79	A79del	GCC	---	1	1	D.2	0.000075
ORF7a	79	A79D	gCc	gAc	1	1	N.5	0.001767
ORF7a	79	A79del	GCC	---	1	1	N.5	0.001767
ORF7a	79	A79T	Gcc	Acc	1	1	P.1	0.000016
ORF7a	79	A79D	gCc	gAc	1	1	P.1	0.000016
ORF7a	79	A79del1	Gcc	-cc	1	1	P.1	0.000016
ORF7a	79	A79del	GCC	---	1	1	P.1.1	0.000318
ORF7a	79	A79V	gCc	gTc	1	1	P.1.1	0.000318
ORF7a	79	A79S	Gcc	Tcc	1	1	P.1.12	0.000484
ORF7a	79	A79del	GCC	---	1	1	P.1.13	0.000898
ORF7a	79	A79del	GCC	---	1	1	P.1.16	0.000374
ORF7a	79	A79del	GCC	---	1	1	P.1.17	0.000162
ORF7a	79	A79V	gCc	gTc	1	1	P.1.17	0.000162
ORF7a	79	A79T	Gcc	Acc	1	1	P.1.17	0.000162
ORF7a	79	A79V	gCC	gTT	1	1	P.1.17.1	0.000875
ORF7a	79	A79V	gCc	gTc	1	1	P.1.2	0.001156
ORF7a	79	A79del	GCC	---	1	1	P.1.3	0.034483
ORF7a	79	A79S	Gcc	Tcc	1	1	P.1.4	0.000977
ORF7a	79	A79del	GCC	---	1	1	P.1.4	0.000977
ORF7a	79	A79del1	Gcc	-cc	1	1	P.2	0.000187
ORF7a	79	A79del	GCC	---	1	1	Q.7	0.001111
ORF7a	79	A79del1	Gcc	-cc	1	1	Q.8	0.000165
ORF7a	79	A79S	Gcc	Tcc	1	1	R.1	0.00009
ORF7a	79	A79V	gCc	gTc	1	1	R.1	0.00009
ORF7a	79	A79A	gcC	gcT	1	1	U.3	0.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.