CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 71

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF7a	71	V71I		nonsyn	Gta	Ata	55663	55662	0.999982	27604-27606
ORF7a	71	V71I		nonsyn	GtA	AtT	55663	1	0.0000179653	27604-27606
ORF7a	71	V71del		del	GTA	---	29849	29849	1	27604-27606
ORF7a	71	V71L		nonsyn	Gta	Tta	1441	1412	0.979875	27604-27606
ORF7a	71	V71L		nonsyn	Gta	Cta	1441	26	0.018043	27604-27606
ORF7a	71	V71L		nonsyn	GtA	TtG	1441	1	0.000693963	27604-27606
ORF7a	71	V71L		nonsyn	GtA	CtT	1441	1	0.000693963	27604-27606
ORF7a	71	V71L		nonsyn	GtA	CtG	1441	1	0.000693963	27604-27606
ORF7a	71	V71del2		del	GTa	--a	682	363	0.532258	27604-27606
ORF7a	71	V71del2		del	gTA	g--	682	269	0.394428	27604-27606
ORF7a	71	V71del2		del	GTA	A--	682	48	0.0703812	27604-27606
ORF7a	71	V71del2		del	GTA	--N	682	2	0.00293255	27604-27606
ORF7a	71	V71V		syn	gtA	gtG	416	311	0.747596	27604-27606
ORF7a	71	V71V		syn	gtA	gtT	416	83	0.199519	27604-27606
ORF7a	71	V71V		syn	gtA	gtC	416	22	0.0528846	27604-27606
ORF7a	71	V71del1		del	Gta	-ta	272	150	0.551471	27604-27606
ORF7a	71	V71del1		del	gtA	gt-	272	96	0.352941	27604-27606
ORF7a	71	V71del1		del	GtA	At-	272	10	0.0367647	27604-27606
ORF7a	71	V71del1		del	GTA	-NN	272	6	0.0220588	27604-27606
ORF7a	71	V71del1		del	GtA	-tN	272	4	0.0147059	27604-27606
ORF7a	71	V71del1		del	GTa	-Aa	272	2	0.00735294	27604-27606
ORF7a	71	V71del1		del	GtA	-tT	272	1	0.00367647	27604-27606
ORF7a	71	V71del1		del	GtA	Nt-	272	1	0.00367647	27604-27606
ORF7a	71	V71del1		del	GtA	-tG	272	1	0.00367647	27604-27606
ORF7a	71	V71del1		del	gTa	g-a	272	1	0.00367647	27604-27606
ORF7a	71	V71A		nonsyn	gTa	gCa	179	178	0.994413	27604-27606
ORF7a	71	V71A		nonsyn	gTA	gCT	179	1	0.00558659	27604-27606
ORF7a	71	V71T		nonsyn	GTa	ACa	51	50	0.980392	27604-27606
ORF7a	71	V71T		nonsyn	GTA	ACG	51	1	0.0196078	27604-27606
ORF7a	71	V71F		nonsyn	GtA	TtT	21	20	0.952381	27604-27606
ORF7a	71	V71F		nonsyn	GtA	TtC	21	1	0.047619	27604-27606
ORF7a	71	V71E		nonsyn	gTa	gAa	14	11	0.785714	27604-27606
ORF7a	71	V71E		nonsyn	gTA	gAG	14	3	0.214286	27604-27606
ORF7a	71	V71K		nonsyn	GTa	AAa	11	10	0.909091	27604-27606
ORF7a	71	V71K		nonsyn	GTA	AAG	11	1	0.0909091	27604-27606
ORF7a	71	V71G		nonsyn	gTa	gGa	10	7	0.7	27604-27606
ORF7a	71	V71G		nonsyn	gTA	gGG	10	2	0.2	27604-27606
ORF7a	71	V71G		nonsyn	gTA	gGT	10	1	0.1	27604-27606
ORF7a	71	V71R		nonsyn	GTa	CGa	4	2	0.5	27604-27606
ORF7a	71	V71R		nonsyn	GTA	AGG	4	1	0.25	27604-27606
ORF7a	71	V71R		nonsyn	GTA	CGT	4	1	0.25	27604-27606
ORF7a	71	V71X		nonsyn	GTa	TAa	3	3	1	27604-27606
ORF7a	71	V71N		nonsyn	GTA	AAT	2	2	1	27604-27606
ORF7a	71	V71S		nonsyn	GTa	TCa	2	2	1	27604-27606
ORF7a	71	V71Q		nonsyn	GTa	CAa	1	1	1	27604-27606
ORF7a	71	V71M		nonsyn	GtA	AtG	1	1	1	27604-27606

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF7a	71	V71I	Gta	Ata	55662	55663	All	0.010646
ORF7a	71	V71I	GtA	AtT	1	55663	All	0
ORF7a	71	V71del	GTA	---	29849	29849	All	0.005709
ORF7a	71	V71I	Gta	Ata	24210	24210	AY.39.1	0.95904
ORF7a	71	V71I	Gta	Ata	23211	23211	AY.39	0.573578
ORF7a	71	V71del	GTA	---	12247	12247	AY.4	0.019062
ORF7a	71	V71I	Gta	Ata	4495	4495	B.1.617.2	0.016926
ORF7a	71	V71del	GTA	---	2689	2689	B.1.617.2	0.010125
ORF7a	71	V71del	GTA	---	2536	2536	AY.44	0.015436
ORF7a	71	V71del	GTA	---	2281	2281	B.1.1.7	0.002042
ORF7a	71	V71L	Gta	Tta	1412	1441	All	0.00027
ORF7a	71	V71L	Gta	Cta	26	1441	All	0.000005
ORF7a	71	V71L	GtA	CtT	1	1441	All	0
ORF7a	71	V71L	GtA	CtG	1	1441	All	0
ORF7a	71	V71L	GtA	TtG	1	1441	All	0
ORF7a	71	V71I	Gta	Ata	1317	1317	AY.39.1.1	0.954348
ORF7a	71	V71del	GTA	---	1170	1170	AY.43	0.005184
ORF7a	71	V71del	GTA	---	752	752	AY.25	0.004523
ORF7a	71	V71del2	GTa	--a	363	682	All	0.000069
ORF7a	71	V71del2	gTA	g--	269	682	All	0.000051
ORF7a	71	V71del2	GTA	A--	48	682	All	0.000009
ORF7a	71	V71del2	GTA	--N	2	682	All	0
ORF7a	71	V71del	GTA	---	641	641	AY.103	0.00398
ORF7a	71	V71I	Gta	Ata	602	602	AY.39.2	0.927581
ORF7a	71	V71del	GTA	---	573	573	AY.3	0.005699
ORF7a	71	V71del	GTA	---	549	549	AY.120	0.020411
ORF7a	71	V71del	GTA	---	481	481	AY.4.2	0.010432
ORF7a	71	V71del	GTA	---	455	455	AY.3.1	0.038793
ORF7a	71	V71del	GTA	---	428	428	AY.39	0.010577
ORF7a	71	V71V	gtA	gtG	311	416	All	0.000059
ORF7a	71	V71V	gtA	gtT	83	416	All	0.000016
ORF7a	71	V71V	gtA	gtC	22	416	All	0.000004
ORF7a	71	V71del	GTA	---	397	397	AY.26	0.011239
ORF7a	71	V71I	Gta	Ata	275	275	AY.5.2	0.67734
ORF7a	71	V71del1	Gta	-ta	150	272	All	0.000029
ORF7a	71	V71del1	gtA	gt-	96	272	All	0.000018
ORF7a	71	V71del1	GtA	At-	10	272	All	0.000002
ORF7a	71	V71del1	GTA	-NN	6	272	All	0.000001
ORF7a	71	V71del1	GtA	-tN	4	272	All	0.000001
ORF7a	71	V71del1	GTa	-Aa	2	272	All	0
ORF7a	71	V71del1	GtA	-tT	1	272	All	0
ORF7a	71	V71del1	gTa	g-a	1	272	All	0
ORF7a	71	V71del1	GtA	Nt-	1	272	All	0
ORF7a	71	V71del1	GtA	-tG	1	272	All	0
ORF7a	71	V71del	GTA	---	255	255	AY.102	0.006761
ORF7a	71	V71del	GTA	---	229	229	AY.29	0.003612
ORF7a	71	V71L	Gta	Tta	211	211	AY.120	0.007845
ORF7a	71	V71del	GTA	---	206	206	B.1.351	0.006124
ORF7a	71	V71L	Gta	Tta	197	205	B.1.1.7	0.000176
ORF7a	71	V71L	Gta	Cta	8	205	B.1.1.7	0.000007
ORF7a	71	V71L	Gta	Tta	190	190	AY.26	0.005379
ORF7a	71	V71del	GTA	---	183	183	B.1.177.21	0.013994
ORF7a	71	V71A	gTa	gCa	178	179	All	0.000034
ORF7a	71	V71A	gTA	gCT	1	179	All	0
ORF7a	71	V71I	Gta	Ata	170	171	B.1.1.7	0.000152
ORF7a	71	V71I	GtA	AtT	1	171	B.1.1.7	0.000001
ORF7a	71	V71L	Gta	Tta	161	161	A.29	0.856383
ORF7a	71	V71del	GTA	---	147	147	B.1.526	0.003455
ORF7a	71	V71I	Gta	Ata	139	139	AY.4	0.000216
ORF7a	71	V71del	GTA	---	136	136	AY.100	0.006257
ORF7a	71	V71del	GTA	---	119	119	B.1.2	0.001048
ORF7a	71	V71del2	GTa	--a	79	116	AY.4	0.000123
ORF7a	71	V71del2	gTA	g--	37	116	AY.4	0.000058
ORF7a	71	V71del	GTA	---	108	108	B.1.177	0.001422
ORF7a	71	V71del	GTA	---	107	107	AY.6	0.004401
ORF7a	71	V71del	GTA	---	102	102	AY.47	0.003173
ORF7a	71	V71del	GTA	---	100	100	AY.119	0.003531
ORF7a	71	V71del	GTA	---	93	93	AY.98	0.007347
ORF7a	71	V71del	GTA	---	92	92	B.1	0.000843
ORF7a	71	V71I	Gta	Ata	88	88	AY.16	0.033409
ORF7a	71	V71del	GTA	---	87	87	AY.46.4	0.014312
ORF7a	71	V71del	GTA	---	85	85	AY.5	0.001755
ORF7a	71	V71V	gtA	gtG	78	82	B.1.617.2	0.000294
ORF7a	71	V71V	gtA	gtT	4	82	B.1.617.2	0.000015
ORF7a	71	V71I	Gta	Ata	78	78	AY.25	0.000469
ORF7a	71	V71I	Gta	Ata	74	74	AY.103	0.000459
ORF7a	71	V71del	GTA	---	74	74	P.1	0.001166
ORF7a	71	V71L	Gta	Tta	73	73	B.1.1.519	0.002899
ORF7a	71	V71I	Gta	Ata	72	72	AY.43	0.000319
ORF7a	71	V71del2	GTa	--a	71	72	AY.46.6	0.005127
ORF7a	71	V71del2	GTA	--N	1	72	AY.46.6	0.000072
ORF7a	71	V71del2	GTa	--a	65	67	AY.25	0.000391
ORF7a	71	V71del2	gTA	g--	1	67	AY.25	0.000006
ORF7a	71	V71del2	GTA	--N	1	67	AY.25	0.000006
ORF7a	71	V71del	GTA	---	64	64	AY.20	0.002487
ORF7a	71	V71L	Gta	Tta	61	64	AY.4	0.000095
ORF7a	71	V71L	Gta	Cta	3	64	AY.4	0.000005
ORF7a	71	V71del	GTA	---	64	64	AY.75	0.003585
ORF7a	71	V71del	GTA	---	64	64	B.1.621	0.005665
ORF7a	71	V71del	GTA	---	62	62	AY.113	0.008828
ORF7a	71	V71V	gtA	gtG	61	62	AY.4	0.000095
ORF7a	71	V71V	gtA	gtT	1	62	AY.4	0.000002
ORF7a	71	V71I	Gta	Ata	61	61	AY.98	0.004819
ORF7a	71	V71del	GTA	---	59	59	AY.9.1	0.00494
ORF7a	71	V71L	Gta	Tta	56	58	B.1.617.2	0.000211
ORF7a	71	V71L	Gta	Cta	1	58	B.1.617.2	0.000004
ORF7a	71	V71L	GtA	CtG	1	58	B.1.617.2	0.000004
ORF7a	71	V71del	GTA	---	56	56	AY.42	0.002253
ORF7a	71	V71del	GTA	---	55	55	AY.39.1	0.002179
ORF7a	71	V71I	Gta	Ata	55	55	B.1.36.18	0.023109
ORF7a	71	V71del2	gTA	g--	54	54	AY.42	0.002172
ORF7a	71	V71del	GTA	---	53	53	AY.23	0.003697
ORF7a	71	V71del1	Gta	-ta	52	53	AY.6	0.002139
ORF7a	71	V71del1	gtA	gt-	1	53	AY.6	0.000041
ORF7a	71	V71T	GTa	ACa	50	51	All	0.00001
ORF7a	71	V71T	GTA	ACG	1	51	All	0
ORF7a	71	V71I	Gta	Ata	49	49	AY.44	0.000298
ORF7a	71	V71del	GTA	---	49	49	B.1.429	0.001153
ORF7a	71	V71del2	gTA	g--	24	48	AY.44	0.000146
ORF7a	71	V71del2	GTa	--a	24	48	AY.44	0.000146
ORF7a	71	V71del	GTA	---	47	47	AY.117	0.003972
ORF7a	71	V71del	GTA	---	47	47	AY.33	0.003139
ORF7a	71	V71del2	GTA	A--	30	47	AY.39	0.000741
ORF7a	71	V71del2	GTa	--a	9	47	AY.39	0.000222
ORF7a	71	V71del2	gTA	g--	8	47	AY.39	0.000198
ORF7a	71	V71T	GTa	ACa	47	47	AY.39.1	0.001862
ORF7a	71	V71del	GTA	---	47	47	B.1.1.284	0.005048
ORF7a	71	V71del	GTA	---	46	46	AY.46	0.004788
ORF7a	71	V71del	GTA	---	46	46	AY.68	0.012592
ORF7a	71	V71L	Gta	Tta	46	46	P.1	0.000725
ORF7a	71	V71del	GTA	---	45	45	AY.46.6	0.003249
ORF7a	71	V71del	GTA	---	43	43	AY.86	0.035685
ORF7a	71	V71L	Gta	Tta	41	42	AY.25	0.000247
ORF7a	71	V71L	Gta	Cta	1	42	AY.25	0.000006
ORF7a	71	V71A	gTa	gCa	42	42	B.1.1.7	0.000038
ORF7a	71	V71del1	Gta	-ta	40	41	AY.25	0.000241
ORF7a	71	V71del1	GTA	-NN	1	41	AY.25	0.000006
ORF7a	71	V71del2	gTA	g--	32	41	AY.3	0.000318
ORF7a	71	V71del2	GTa	--a	9	41	AY.3	0.00009
ORF7a	71	V71del	GTA	---	41	41	AY.61	0.004296
ORF7a	71	V71del	GTA	---	40	40	B.1.160	0.001248
ORF7a	71	V71del	GTA	---	39	39	B.1.637	0.00285
ORF7a	71	V71del	GTA	---	38	38	AY.54	0.003623
ORF7a	71	V71I	Gta	Ata	37	37	AY.47	0.001151
ORF7a	71	V71del2	gTA	g--	18	37	B.1.617.2	0.000068
ORF7a	71	V71del2	GTa	--a	16	37	B.1.617.2	0.00006
ORF7a	71	V71del2	GTA	A--	3	37	B.1.617.2	0.000011
ORF7a	71	V71del	GTA	---	36	36	B.1.1.214	0.001996
ORF7a	71	V71del	GTA	---	36	36	B.1.628	0.012685
ORF7a	71	V71del	GTA	---	35	35	AY.45	0.004259
ORF7a	71	V71A	gTa	gCa	35	35	AY.74	0.004048
ORF7a	71	V71del1	gtA	gt-	23	34	AY.103	0.000143
ORF7a	71	V71del1	Gta	-ta	11	34	AY.103	0.000068
ORF7a	71	V71del	GTA	---	33	33	AY.36	0.004891
ORF7a	71	V71del	GTA	---	32	32	AY.37	0.010114
ORF7a	71	V71del	GTA	---	32	32	B.1.1	0.000581
ORF7a	71	V71V	gtA	gtG	25	32	B.1.1.7	0.000022
ORF7a	71	V71V	gtA	gtT	4	32	B.1.1.7	0.000004
ORF7a	71	V71V	gtA	gtC	3	32	B.1.1.7	0.000003
ORF7a	71	V71del	GTA	---	31	31	AY.34	0.003006
ORF7a	71	V71I	Gta	Ata	31	31	B.1.2	0.000273
ORF7a	71	V71del	GTA	---	30	30	AY.118	0.001879
ORF7a	71	V71I	Gta	Ata	30	30	AY.29	0.000473
ORF7a	71	V71L	Gta	Tta	30	30	AY.46.6	0.002166
ORF7a	71	V71del	GTA	---	30	30	AY.5.4	0.008301
ORF7a	71	V71del	GTA	---	30	30	AY.98.1	0.001453
ORF7a	71	V71del	GTA	---	29	29	AY.7.2	0.016219
ORF7a	71	V71del	GTA	---	29	29	AY.99.2	0.002673
ORF7a	71	V71I	Gta	Ata	29	29	AY.99.2	0.002673
ORF7a	71	V71V	gtA	gtG	28	28	AY.119	0.000989
ORF7a	71	V71I	Gta	Ata	28	28	P.1	0.000441
ORF7a	71	V71I	Gta	Ata	28	28	P.1.1	0.008895
ORF7a	71	V71del	GTA	---	27	27	AY.114	0.00624
ORF7a	71	V71I	Gta	Ata	27	27	AY.3	0.000269
ORF7a	71	V71del	GTA	---	27	27	C.37	0.003134
ORF7a	71	V71del	GTA	---	26	26	AY.121	0.003518
ORF7a	71	V71del	GTA	---	25	25	AY.110	0.002817
ORF7a	71	V71del1	Gta	-ta	17	25	AY.4	0.000026
ORF7a	71	V71del1	gtA	gt-	7	25	AY.4	0.000011
ORF7a	71	V71del1	GtA	-tN	1	25	AY.4	0.000002
ORF7a	71	V71del	GTA	---	25	25	AY.9	0.00169
ORF7a	71	V71del	GTA	---	25	25	B.1.1.519	0.000993
ORF7a	71	V71L	Gta	Tta	25	25	B.1.160	0.00078
ORF7a	71	V71del	GTA	---	25	25	B.1.596	0.002178
ORF7a	71	V71A	gTa	gCa	24	24	AY.4	0.000037
ORF7a	71	V71L	Gta	Tta	24	24	B.1.1.70	0.008186
ORF7a	71	V71I	Gta	Ata	23	23	AY.117	0.001944
ORF7a	71	V71L	Gta	Tta	23	23	AY.43	0.000102
ORF7a	71	V71V	gtA	gtG	23	23	B.1.399	0.044487
ORF7a	71	V71del	GTA	---	23	23	B.1.427	0.001161
ORF7a	71	V71F	GtA	TtT	20	21	All	0.000004
ORF7a	71	V71F	GtA	TtC	1	21	All	0
ORF7a	71	V71I	Gta	Ata	21	21	AY.108	0.023153
ORF7a	71	V71I	Gta	Ata	21	21	AY.114	0.004853
ORF7a	71	V71L	Gta	Tta	18	21	AY.44	0.00011
ORF7a	71	V71L	Gta	Cta	2	21	AY.44	0.000012
ORF7a	71	V71L	GtA	TtG	1	21	AY.44	0.000006
ORF7a	71	V71del	GTA	---	21	21	R.1	0.00189
ORF7a	71	V71del2	gTA	g--	11	20	AY.103	0.000068
ORF7a	71	V71del2	GTa	--a	8	20	AY.103	0.00005
ORF7a	71	V71del2	GTA	A--	1	20	AY.103	0.000006
ORF7a	71	V71F	GtA	TtT	20	20	AY.44	0.000122
ORF7a	71	V71del	GTA	---	20	20	AY.9.2	0.000735
ORF7a	71	V71del	GTA	---	19	19	AY.35	0.004428
ORF7a	71	V71del2	gTA	g--	11	19	B.1.1.7	0.00001
ORF7a	71	V71del2	GTa	--a	7	19	B.1.1.7	0.000006
ORF7a	71	V71del2	GTA	A--	1	19	B.1.1.7	0.000001
ORF7a	71	V71L	Gta	Tta	16	18	AY.103	0.000099
ORF7a	71	V71L	Gta	Cta	2	18	AY.103	0.000012
ORF7a	71	V71del	GTA	---	18	18	AY.120.1	0.005778
ORF7a	71	V71I	Gta	Ata	18	18	AY.20	0.0007
ORF7a	71	V71L	Gta	Tta	18	18	B.1.1.176	0.007909
ORF7a	71	V71del1	Gta	-ta	12	18	B.1.1.7	0.000011
ORF7a	71	V71del1	gtA	gt-	4	18	B.1.1.7	0.000004
ORF7a	71	V71del1	GtA	Nt-	1	18	B.1.1.7	0.000001
ORF7a	71	V71del1	gTa	g-a	1	18	B.1.1.7	0.000001
ORF7a	71	V71del	GTA	---	17	17	AY.106	0.005693
ORF7a	71	V71del	GTA	---	17	17	AY.30	0.006727
ORF7a	71	V71del2	gTA	g--	17	17	AY.34	0.001648
ORF7a	71	V71I	Gta	Ata	17	17	AY.5	0.000351
ORF7a	71	V71V	gtA	gtT	17	17	B.1.258	0.001131
ORF7a	71	V71I	Gta	Ata	16	16	AY.23	0.001116
ORF7a	71	V71I	Gta	Ata	16	16	B.1.177.85	0.086957
ORF7a	71	V71L	Gta	Tta	16	16	B.1.628	0.005638
ORF7a	71	V71V	gtA	gtG	14	15	AY.103	0.000087
ORF7a	71	V71V	gtA	gtT	1	15	AY.103	0.000006
ORF7a	71	V71del	GTA	---	15	15	AY.107	0.00699
ORF7a	71	V71del	GTA	---	15	15	AY.111	0.002747
ORF7a	71	V71del	GTA	---	15	15	AY.7	0.00294
ORF7a	71	V71I	Gta	Ata	15	15	AY.75	0.00084
ORF7a	71	V71E	gTa	gAa	11	14	All	0.000002
ORF7a	71	V71E	gTA	gAG	3	14	All	0.000001
ORF7a	71	V71I	Gta	Ata	14	14	AY.102	0.000371
ORF7a	71	V71I	Gta	Ata	14	14	AY.110	0.001578
ORF7a	71	V71del	GTA	---	14	14	AY.116	0.004015
ORF7a	71	V71I	Gta	Ata	14	14	AY.118	0.000877
ORF7a	71	V71V	gtA	gtT	10	14	AY.44	0.000061
ORF7a	71	V71V	gtA	gtG	2	14	AY.44	0.000012
ORF7a	71	V71V	gtA	gtC	2	14	AY.44	0.000012
ORF7a	71	V71L	Gta	Tta	14	14	B.1	0.000128
ORF7a	71	V71del	GTA	---	14	14	B.1.1.258	0.045603
ORF7a	71	V71del	GTA	---	14	14	P.1.14	0.000669
ORF7a	71	V71del	GTA	---	13	13	AY.14	0.001144
ORF7a	71	V71I	Gta	Ata	13	13	B.1.1.301	0.01533
ORF7a	71	V71L	Gta	Tta	13	13	B.1.575	0.003944
ORF7a	71	V71L	Gta	Tta	13	13	B.1.638	0.684211
ORF7a	71	V71del	GTA	---	12	12	AY.12	0.003793
ORF7a	71	V71del1	gtA	gt-	12	12	AY.29	0.000189
ORF7a	71	V71I	Gta	Ata	12	12	AY.4.5	0.00129
ORF7a	71	V71del	GTA	---	12	12	AY.46.2	0.007624
ORF7a	71	V71del	GTA	---	12	12	AY.84	0.005249
ORF7a	71	V71del	GTA	---	12	12	AY.99	0.012592
ORF7a	71	V71V	gtA	gtT	12	12	B.1.2	0.000106
ORF7a	71	V71del	GTA	---	12	12	B.1.324	0.019262
ORF7a	71	V71I	Gta	Ata	12	12	B.1.36	0.001751
ORF7a	71	V71I	Gta	Ata	12	12	B.1.429	0.000282
ORF7a	71	V71I	Gta	Ata	12	12	B.1.526	0.000282
ORF7a	71	V71del	GTA	---	12	12	Q.8	0.001979
ORF7a	71	V71K	GTa	AAa	10	11	All	0.000002
ORF7a	71	V71K	GTA	AAG	1	11	All	0
ORF7a	71	V71del2	gTA	g--	8	11	AY.102	0.000212
ORF7a	71	V71del2	GTa	--a	3	11	AY.102	0.00008
ORF7a	71	V71I	Gta	Ata	11	11	AY.119	0.000388
ORF7a	71	V71I	Gta	Ata	11	11	AY.26	0.000311
ORF7a	71	V71I	Gta	Ata	11	11	AY.36	0.00163
ORF7a	71	V71I	Gta	Ata	11	11	AY.4.2	0.000239
ORF7a	71	V71del	GTA	---	11	11	B.1.177.15	0.00694
ORF7a	71	V71del2	GTa	--a	10	11	B.1.2	0.000088
ORF7a	71	V71del2	gTA	g--	1	11	B.1.2	0.000009
ORF7a	71	V71del	GTA	---	11	11	B.1.234	0.001451
ORF7a	71	V71A	gTa	gCa	11	11	R.1	0.00099
ORF7a	71	V71G	gTa	gGa	7	10	All	0.000001
ORF7a	71	V71G	gTA	gGG	2	10	All	0
ORF7a	71	V71G	gTA	gGT	1	10	All	0
ORF7a	71	V71I	Gta	Ata	10	10	AY.46	0.001041
ORF7a	71	V71del	GTA	---	10	10	AY.7.1	0.001127
ORF7a	71	V71del	GTA	---	10	10	AY.71	0.004751
ORF7a	71	V71del	GTA	---	10	10	AY.74	0.001156
ORF7a	71	V71del	GTA	---	10	10	AY.87	0.008326
ORF7a	71	V71I	Gta	Ata	10	10	AY.92	0.002873
ORF7a	71	V71del2	GTa	--a	10	10	C.37	0.001161
ORF7a	71	V71del	GTA	---	9	9	AY.10	0.004769
ORF7a	71	V71I	Gta	Ata	9	9	AY.33	0.000601
ORF7a	71	V71del2	GTa	--a	6	9	AY.43	0.000027
ORF7a	71	V71del2	gTA	g--	3	9	AY.43	0.000013
ORF7a	71	V71del	GTA	---	9	9	AY.46.5	0.001786
ORF7a	71	V71I	Gta	Ata	9	9	AY.5.3	0.003036
ORF7a	71	V71del	GTA	---	9	9	B.1.258.9	0.045
ORF7a	71	V71del1	gtA	gt-	5	9	B.1.617.2	0.000019
ORF7a	71	V71del1	Gta	-ta	1	9	B.1.617.2	0.000004
ORF7a	71	V71del1	GtA	At-	1	9	B.1.617.2	0.000004
ORF7a	71	V71del1	GtA	-tG	1	9	B.1.617.2	0.000004
ORF7a	71	V71del1	GTA	-NN	1	9	B.1.617.2	0.000004
ORF7a	71	V71del	GTA	---	9	9	L.1	0.017143
ORF7a	71	V71A	gTa	gCa	9	9	P.1.2	0.010405
ORF7a	71	V71del	GTA	---	8	8	AY.13	0.001288
ORF7a	71	V71del	GTA	---	8	8	AY.16	0.003037
ORF7a	71	V71V	gtA	gtG	6	8	AY.25	0.000036
ORF7a	71	V71V	gtA	gtT	2	8	AY.25	0.000012
ORF7a	71	V71del1	GtA	At-	3	8	AY.39	0.000074
ORF7a	71	V71del1	GtA	-tN	2	8	AY.39	0.000049
ORF7a	71	V71del1	Gta	-ta	2	8	AY.39	0.000049
ORF7a	71	V71del1	GTA	-NN	1	8	AY.39	0.000025
ORF7a	71	V71del	GTA	---	8	8	AY.4.2.1	0.001192
ORF7a	71	V71del	GTA	---	8	8	AY.4.5	0.00086
ORF7a	71	V71del1	gtA	gt-	2	8	AY.44	0.000012
ORF7a	71	V71del1	Gta	-ta	2	8	AY.44	0.000012
ORF7a	71	V71del1	GTA	-NN	2	8	AY.44	0.000012
ORF7a	71	V71del1	GtA	At-	1	8	AY.44	0.000006
ORF7a	71	V71del1	GtA	-tT	1	8	AY.44	0.000006
ORF7a	71	V71del	GTA	---	8	8	AY.59	0.004237
ORF7a	71	V71V	gtA	gtC	8	8	AY.75	0.000448
ORF7a	71	V71I	Gta	Ata	8	8	B.1	0.000073
ORF7a	71	V71V	gtA	gtG	6	8	B.1	0.000055
ORF7a	71	V71V	gtA	gtT	2	8	B.1	0.000018
ORF7a	71	V71del	GTA	---	8	8	B.1.1.231	0.024768
ORF7a	71	V71L	Gta	Tta	8	8	B.1.177	0.000105
ORF7a	71	V71del	GTA	---	8	8	B.1.243	0.000557
ORF7a	71	V71del	GTA	---	8	8	B.1.525	0.000905
ORF7a	71	V71A	gTa	gCa	8	8	B.1.617.2	0.00003
ORF7a	71	V71del	GTA	---	7	7	AY.19	0.007982
ORF7a	71	V71del	GTA	---	7	7	AY.34.1	0.00357
ORF7a	71	V71I	Gta	Ata	7	7	AY.42	0.000282
ORF7a	71	V71V	gtA	gtG	4	7	AY.43	0.000018
ORF7a	71	V71V	gtA	gtT	3	7	AY.43	0.000013
ORF7a	71	V71del	GTA	---	7	7	AY.49	0.022364
ORF7a	71	V71L	Gta	Tta	7	7	B.1.1.214	0.000388
ORF7a	71	V71L	Gta	Tta	6	7	B.1.2	0.000053
ORF7a	71	V71L	Gta	Cta	1	7	B.1.2	0.000009
ORF7a	71	V71I	Gta	Ata	7	7	B.1.621	0.00062
ORF7a	71	V71V	gtA	gtT	5	7	P.1	0.000079
ORF7a	71	V71V	gtA	gtG	2	7	P.1	0.000032
ORF7a	71	V71del	GTA	---	7	7	P.1.15	0.001626
ORF7a	71	V71I	Gta	Ata	6	6	AY.113	0.000854
ORF7a	71	V71I	Gta	Ata	6	6	AY.116	0.001721
ORF7a	71	V71I	Gta	Ata	6	6	AY.120	0.000223
ORF7a	71	V71A	gTa	gCa	6	6	AY.25	0.000036
ORF7a	71	V71del	GTA	---	6	6	AY.29.1	0.001323
ORF7a	71	V71L	Gta	Tta	6	6	AY.3	0.00006
ORF7a	71	V71V	gtA	gtT	3	6	AY.3	0.00003
ORF7a	71	V71V	gtA	gtG	2	6	AY.3	0.00002
ORF7a	71	V71V	gtA	gtC	1	6	AY.3	0.00001
ORF7a	71	V71I	Gta	Ata	6	6	AY.30	0.002374
ORF7a	71	V71del1	Gta	-ta	6	6	AY.4.2	0.00013
ORF7a	71	V71del	GTA	---	6	6	AY.40	0.005786
ORF7a	71	V71I	Gta	Ata	6	6	AY.45	0.00073
ORF7a	71	V71del2	GTa	--a	4	6	AY.5	0.000083
ORF7a	71	V71del2	gTA	g--	2	6	AY.5	0.000041
ORF7a	71	V71del	GTA	---	6	6	AY.65	0.003198
ORF7a	71	V71del	GTA	---	6	6	AY.73	0.003992
ORF7a	71	V71I	Gta	Ata	6	6	AY.87	0.004996
ORF7a	71	V71I	Gta	Ata	6	6	AY.9.2	0.00022
ORF7a	71	V71I	Gta	Ata	6	6	AY.91	0.004383
ORF7a	71	V71L	Gta	Tta	6	6	AY.99.2	0.000553
ORF7a	71	V71I	Gta	Ata	6	6	B.1.160	0.000187
ORF7a	71	V71I	Gta	Ata	6	6	B.1.177	0.000079
ORF7a	71	V71V	gtA	gtG	6	6	B.1.177.32	0.008097
ORF7a	71	V71del1	gtA	gt-	5	6	B.1.2	0.000044
ORF7a	71	V71del1	Gta	-ta	1	6	B.1.2	0.000009
ORF7a	71	V71del	GTA	---	6	6	B.1.214.2	0.003597
ORF7a	71	V71I	Gta	Ata	6	6	B.1.258	0.000399
ORF7a	71	V71del	GTA	---	6	6	B.1.595	0.001566
ORF7a	71	V71del	GTA	---	5	5	A	0.001935
ORF7a	71	V71V	gtA	gtG	5	5	A	0.001935
ORF7a	71	V71del2	gTA	g--	5	5	AY.114	0.001156
ORF7a	71	V71I	Gta	Ata	5	5	AY.13	0.000805
ORF7a	71	V71del	GTA	---	5	5	AY.24	0.002155
ORF7a	71	V71del2	gTA	g--	3	5	AY.26	0.000085
ORF7a	71	V71del2	GTa	--a	2	5	AY.26	0.000057
ORF7a	71	V71del	GTA	---	5	5	AY.27	0.000324
ORF7a	71	V71del1	GtA	At-	5	5	AY.39.1	0.000198
ORF7a	71	V71del1	gtA	gt-	4	5	AY.43	0.000018
ORF7a	71	V71del1	Gta	-ta	1	5	AY.43	0.000004
ORF7a	71	V71A	gTa	gCa	5	5	AY.44	0.00003
ORF7a	71	V71V	gtA	gtG	5	5	AY.46	0.00052
ORF7a	71	V71del	GTA	---	5	5	AY.46.1	0.005133
ORF7a	71	V71I	Gta	Ata	5	5	AY.46.6	0.000361
ORF7a	71	V71del	GTA	---	5	5	AY.62	0.002179
ORF7a	71	V71del	GTA	---	5	5	AY.80	0.005643
ORF7a	71	V71del	GTA	---	5	5	AY.91	0.003652
ORF7a	71	V71del	GTA	---	5	5	AY.95	0.003805
ORF7a	71	V71del	GTA	---	5	5	B.1.1.33	0.002104
ORF7a	71	V71del	GTA	---	5	5	B.1.1.37	0.000964
ORF7a	71	V71del	GTA	---	5	5	B.1.1.56	0.089286
ORF7a	71	V71V	gtA	gtG	5	5	B.1.177	0.000066
ORF7a	71	V71K	GTa	AAa	5	5	B.1.177.21	0.000382
ORF7a	71	V71E	gTA	gAG	3	5	B.1.177.21	0.000229
ORF7a	71	V71E	gTa	gAa	2	5	B.1.177.21	0.000153
ORF7a	71	V71L	Gta	Tta	5	5	B.1.177.53	0.011962
ORF7a	71	V71del	GTA	---	5	5	B.1.375	0.004098
ORF7a	71	V71del	GTA	---	5	5	B.1.623	0.002682
ORF7a	71	V71V	gtA	gtT	5	5	B.1.626	0.028571
ORF7a	71	V71del	GTA	---	5	5	B.1.70	0.121951
ORF7a	71	V71L	Gta	Tta	5	5	C.16	0.005302
ORF7a	71	V71del	GTA	---	5	5	D.2	0.000375
ORF7a	71	V71del2	gTA	g--	2	5	P.1	0.000032
ORF7a	71	V71del2	GTa	--a	2	5	P.1	0.000032
ORF7a	71	V71del2	GTA	A--	1	5	P.1	0.000016
ORF7a	71	V71del	GTA	---	5	5	P.1.7	0.001596
ORF7a	71	V71del	GTA	---	5	5	P.2	0.000933
ORF7a	71	V71del	GTA	---	5	5	Q.1	0.000632
ORF7a	71	V71R	GTa	CGa	2	4	All	0
ORF7a	71	V71R	GTA	CGT	1	4	All	0
ORF7a	71	V71R	GTA	AGG	1	4	All	0
ORF7a	71	V71I	Gta	Ata	4	4	AY.100	0.000184
ORF7a	71	V71I	Gta	Ata	4	4	AY.101	0.001962
ORF7a	71	V71V	gtA	gtG	4	4	AY.102	0.000106
ORF7a	71	V71L	Gta	Tta	3	4	AY.102	0.00008
ORF7a	71	V71L	Gta	Cta	1	4	AY.102	0.000027
ORF7a	71	V71del2	gTA	g--	3	4	AY.117	0.000254
ORF7a	71	V71del2	GTA	A--	1	4	AY.117	0.000085
ORF7a	71	V71del	GTA	---	4	4	AY.120.2	0.005141
ORF7a	71	V71del	GTA	---	4	4	AY.2	0.001425
ORF7a	71	V71V	gtA	gtG	3	4	AY.20	0.000117
ORF7a	71	V71V	gtA	gtC	1	4	AY.20	0.000039
ORF7a	71	V71I	Gta	Ata	4	4	AY.3.1	0.000341
ORF7a	71	V71L	Gta	Tta	4	4	AY.33	0.000267
ORF7a	71	V71V	gtA	gtG	4	4	AY.45	0.000487
ORF7a	71	V71del2	GTa	--a	4	4	AY.46	0.000416
ORF7a	71	V71del2	gTA	g--	2	4	AY.47	0.000062
ORF7a	71	V71del2	GTA	A--	1	4	AY.47	0.000031
ORF7a	71	V71del2	GTa	--a	1	4	AY.47	0.000031
ORF7a	71	V71del	GTA	---	4	4	AY.48	0.00186
ORF7a	71	V71del2	GTa	--a	4	4	AY.5.2	0.009852
ORF7a	71	V71del	GTA	---	4	4	AY.5.3	0.00135
ORF7a	71	V71I	Gta	Ata	4	4	AY.65	0.002132
ORF7a	71	V71del	GTA	---	4	4	AY.66	0.004278
ORF7a	71	V71del	GTA	---	4	4	AY.88	0.003537
ORF7a	71	V71del	GTA	---	4	4	AY.92	0.001149
ORF7a	71	V71del	GTA	---	4	4	AY.93	0.001092
ORF7a	71	V71del	GTA	---	4	4	B.1.1.1	0.001307
ORF7a	71	V71del	GTA	---	4	4	B.1.1.164	0.020619
ORF7a	71	V71L	Gta	Tta	4	4	B.1.1.222	0.000816
ORF7a	71	V71del	GTA	---	4	4	B.1.1.25	0.002274
ORF7a	71	V71L	Gta	Tta	4	4	B.1.118	0.026846
ORF7a	71	V71del2	GTA	A--	2	4	B.1.160	0.000062
ORF7a	71	V71del2	GTa	--a	2	4	B.1.160	0.000062
ORF7a	71	V71del	GTA	---	4	4	B.1.258	0.000266
ORF7a	71	V71del	GTA	---	4	4	B.1.351.2	0.00121
ORF7a	71	V71del	GTA	---	4	4	B.1.36	0.000584
ORF7a	71	V71del	GTA	---	4	4	B.1.466.2	0.001565
ORF7a	71	V71del	GTA	---	4	4	B.1.575	0.001214
ORF7a	71	V71I	Gta	Ata	4	4	B.1.575	0.001214
ORF7a	71	V71del	GTA	---	4	4	B.1.577	0.002749
ORF7a	71	V71L	Gta	Tta	3	3	A	0.001161
ORF7a	71	V71X	GTa	TAa	3	3	All	0.000001
ORF7a	71	V71del	GTA	---	3	3	AY.105	0.001929
ORF7a	71	V71K	GTa	AAa	3	3	AY.106	0.001005
ORF7a	71	V71del2	GTa	--a	3	3	AY.107	0.001398
ORF7a	71	V71I	Gta	Ata	3	3	AY.111	0.000549
ORF7a	71	V71del	GTA	---	3	3	AY.116.1	0.000934
ORF7a	71	V71L	Gta	Tta	3	3	AY.119	0.000106
ORF7a	71	V71I	Gta	Ata	3	3	AY.121	0.000406
ORF7a	71	V71I	Gta	Ata	3	3	AY.14	0.000264
ORF7a	71	V71L	Gta	Cta	2	3	AY.29	0.000032
ORF7a	71	V71del2	GTa	--a	2	3	AY.29	0.000032
ORF7a	71	V71del2	GTA	A--	1	3	AY.29	0.000016
ORF7a	71	V71L	Gta	Tta	1	3	AY.29	0.000016
ORF7a	71	V71del2	GTA	A--	3	3	AY.3.1	0.000256
ORF7a	71	V71del2	GTA	A--	2	3	AY.39.1	0.000079
ORF7a	71	V71del2	GTa	--a	1	3	AY.39.1	0.00004
ORF7a	71	V71del2	gTA	g--	3	3	AY.4.2	0.000065
ORF7a	71	V71A	gTa	gCa	3	3	AY.43	0.000013
ORF7a	71	V71I	Gta	Ata	3	3	AY.46.2	0.001906
ORF7a	71	V71L	Gta	Tta	3	3	AY.47	0.000093
ORF7a	71	V71V	gtA	gtG	3	3	AY.5	0.000062
ORF7a	71	V71del	GTA	---	3	3	AY.53	0.000863
ORF7a	71	V71del	GTA	---	3	3	AY.64	0.001786
ORF7a	71	V71L	Gta	Tta	3	3	AY.68	0.000821
ORF7a	71	V71del	GTA	---	3	3	AY.69	0.00056
ORF7a	71	V71del	GTA	---	3	3	AY.8	0.001818
ORF7a	71	V71del	GTA	---	3	3	AY.85	0.001282
ORF7a	71	V71A	gTa	gCa	3	3	AY.88	0.002653
ORF7a	71	V71del	GTA	---	3	3	AY.90	0.002053
ORF7a	71	V71V	gtA	gtC	3	3	AY.98.1	0.000145
ORF7a	71	V71del2	gTA	g--	2	3	AY.98.1	0.000097
ORF7a	71	V71del2	GTa	--a	1	3	AY.98.1	0.000048
ORF7a	71	V71L	Gta	Tta	3	3	B	0.000383
ORF7a	71	V71del2	gTA	g--	3	3	B.1	0.000027
ORF7a	71	V71L	Gta	Tta	3	3	B.1.1	0.000054
ORF7a	71	V71del	GTA	---	3	3	B.1.1.121	0.007282
ORF7a	71	V71del	GTA	---	3	3	B.1.1.170	0.003741
ORF7a	71	V71del	GTA	---	3	3	B.1.1.189	0.004539
ORF7a	71	V71del	GTA	---	3	3	B.1.1.222	0.000612
ORF7a	71	V71I	Gta	Ata	3	3	B.1.1.39	0.001529
ORF7a	71	V71L	Gta	Tta	3	3	B.1.1.50	0.002037
ORF7a	71	V71I	Gta	Ata	3	3	B.1.1.519	0.000119
ORF7a	71	V71X	GTa	TAa	3	3	B.1.177.21	0.000229
ORF7a	71	V71del	GTA	---	3	3	B.1.177.57	0.000843
ORF7a	71	V71del	GTA	---	3	3	B.1.177.7	0.000495
ORF7a	71	V71del	GTA	---	3	3	B.1.221	0.000213
ORF7a	71	V71A	gTa	gCa	3	3	B.1.258	0.0002
ORF7a	71	V71del	GTA	---	3	3	B.1.258.17	0.000312
ORF7a	71	V71del	GTA	---	3	3	B.1.311	0.000824
ORF7a	71	V71A	gTa	gCa	3	3	B.1.351	0.000089
ORF7a	71	V71del	GTA	---	3	3	B.1.36.36	0.001806
ORF7a	71	V71L	Gta	Tta	3	3	B.1.36.38	0.004926
ORF7a	71	V71del	GTA	---	3	3	B.1.369	0.000856
ORF7a	71	V71I	Gta	Ata	3	3	B.1.427	0.000151
ORF7a	71	V71del1	gtA	gt-	3	3	B.1.596	0.000261
ORF7a	71	V71del	GTA	---	3	3	B.1.626	0.017143
ORF7a	71	V71L	Gta	Tta	3	3	P.1.10	0.000808
ORF7a	71	V71L	Gta	Tta	3	3	P.1.14	0.000143
ORF7a	71	V71I	Gta	Ata	3	3	P.1.15	0.000697
ORF7a	71	V71del1	gtA	gt-	2	2		0.111111
ORF7a	71	V71R	GTA	CGT	1	2		0.055556
ORF7a	71	V71G	gTA	gGT	1	2		0.055556
ORF7a	71	V71G	gTa	gGa	1	2		0.055556
ORF7a	71	V71L	GtA	CtT	1	2		0.055556
ORF7a	71	V71R	GTa	CGa	1	2		0.055556
ORF7a	71	V71L	Gta	Cta	1	2		0.055556
ORF7a	71	V71I	Gta	Ata	2	2	A.1	0.000564
ORF7a	71	V71del	GTA	---	2	2	A.23.1	0.001408
ORF7a	71	V71del	GTA	---	2	2	A.28	0.005291
ORF7a	71	V71del	GTA	---	2	2	AD.2	0.000438
ORF7a	71	V71S	GTa	TCa	2	2	All	0
ORF7a	71	V71N	GTA	AAT	2	2	All	0
ORF7a	71	V71del	GTA	---	2	2	AY.1	0.000791
ORF7a	71	V71del2	GTa	--a	1	2	AY.100	0.000046
ORF7a	71	V71del2	gTA	g--	1	2	AY.100	0.000046
ORF7a	71	V71del1	gtA	gt-	2	2	AY.102	0.000053
ORF7a	71	V71I	Gta	Ata	2	2	AY.105	0.001286
ORF7a	71	V71I	Gta	Ata	2	2	AY.106	0.00067
ORF7a	71	V71del	GTA	---	2	2	AY.108	0.002205
ORF7a	71	V71del	GTA	---	2	2	AY.109	0.001479
ORF7a	71	V71L	Gta	Tta	2	2	AY.113	0.000285
ORF7a	71	V71L	Gta	Tta	2	2	AY.117	0.000169
ORF7a	71	V71A	gTa	gCa	2	2	AY.118	0.000125
ORF7a	71	V71del2	gTA	g--	1	2	AY.120	0.000037
ORF7a	71	V71del2	GTa	--a	1	2	AY.120	0.000037
ORF7a	71	V71L	Gta	Tta	2	2	AY.120.1	0.000642
ORF7a	71	V71del2	gTA	g--	2	2	AY.14	0.000176
ORF7a	71	V71L	Gta	Tta	2	2	AY.20	0.000078
ORF7a	71	V71V	gtA	gtG	2	2	AY.26	0.000057
ORF7a	71	V71del1	gtA	gt-	1	2	AY.26	0.000028
ORF7a	71	V71del1	GTa	-Aa	1	2	AY.26	0.000028
ORF7a	71	V71del1	gtA	gt-	2	2	AY.3	0.00002
ORF7a	71	V71L	Gta	Tta	2	2	AY.36	0.000296
ORF7a	71	V71L	Gta	Tta	2	2	AY.39.1	0.000079
ORF7a	71	V71del	GTA	---	2	2	AY.4.1	0.001475
ORF7a	71	V71L	Gta	Tta	2	2	AY.4.2	0.000043
ORF7a	71	V71A	gTa	gCa	2	2	AY.4.2	0.000043
ORF7a	71	V71del	GTA	---	2	2	AY.4.4	0.000818
ORF7a	71	V71del	GTA	---	2	2	AY.41	0.000588
ORF7a	71	V71del2	GTa	--a	1	2	AY.45	0.000122
ORF7a	71	V71del2	gTA	g--	1	2	AY.45	0.000122
ORF7a	71	V71L	Gta	Tta	2	2	AY.46	0.000208
ORF7a	71	V71L	Gta	Tta	2	2	AY.5	0.000041
ORF7a	71	V71del	GTA	---	2	2	AY.51	0.001818
ORF7a	71	V71del	GTA	---	2	2	AY.52	0.001629
ORF7a	71	V71A	gTa	gCa	2	2	AY.54	0.000191
ORF7a	71	V71V	gtA	gtT	1	2	AY.54	0.000095
ORF7a	71	V71V	gtA	gtG	1	2	AY.54	0.000095
ORF7a	71	V71L	Gta	Tta	2	2	AY.7.1	0.000225
ORF7a	71	V71del	GTA	---	2	2	AY.70	0.000417
ORF7a	71	V71I	Gta	Ata	2	2	AY.71	0.00095
ORF7a	71	V71L	Gta	Tta	2	2	AY.75	0.000112
ORF7a	71	V71del	GTA	---	2	2	AY.75.1	0.000361
ORF7a	71	V71del	GTA	---	2	2	AY.79	0.002421
ORF7a	71	V71I	Gta	Ata	2	2	AY.80	0.002257
ORF7a	71	V71del	GTA	---	2	2	AY.82	0.002714
ORF7a	71	V71I	Gta	Ata	2	2	AY.85	0.000854
ORF7a	71	V71I	Gta	Ata	2	2	AY.93	0.000546
ORF7a	71	V71I	Gta	Ata	2	2	AY.95	0.001522
ORF7a	71	V71L	Gta	Tta	2	2	AY.98.1	0.000097
ORF7a	71	V71I	Gta	Ata	2	2	AY.98.1	0.000097
ORF7a	71	V71del	GTA	---	2	2	AZ.2	0.001642
ORF7a	71	V71I	Gta	Ata	2	2	B.1.1	0.000036
ORF7a	71	V71del	GTA	---	2	2	B.1.1.101	0.02
ORF7a	71	V71del	GTA	---	2	2	B.1.1.163	0.015267
ORF7a	71	V71del	GTA	---	2	2	B.1.1.192	0.004619
ORF7a	71	V71I	Gta	Ata	2	2	B.1.1.214	0.000111
ORF7a	71	V71del	GTA	---	2	2	B.1.1.220	0.003717
ORF7a	71	V71del	GTA	---	2	2	B.1.1.265	0.006309
ORF7a	71	V71L	Gta	Tta	2	2	B.1.1.277	0.001517
ORF7a	71	V71del2	GTa	--a	2	2	B.1.1.284	0.000215
ORF7a	71	V71del	GTA	---	2	2	B.1.1.303	0.005525
ORF7a	71	V71del	GTA	---	2	2	B.1.1.311	0.000716
ORF7a	71	V71L	Gta	Tta	2	2	B.1.1.311	0.000716
ORF7a	71	V71del	GTA	---	2	2	B.1.1.318	0.000604
ORF7a	71	V71del	GTA	---	2	2	B.1.1.372	0.001377
ORF7a	71	V71V	gtA	gtG	2	2	B.1.1.50	0.001358
ORF7a	71	V71del	GTA	---	2	2	B.1.1.521	0.010695
ORF7a	71	V71S	GTa	TCa	2	2	B.1.1.7	0.000002
ORF7a	71	V71del	GTA	---	2	2	B.1.139	0.001466
ORF7a	71	V71del	GTA	---	2	2	B.1.160.16	0.001859
ORF7a	71	V71del	GTA	---	2	2	B.1.160.30	0.005952
ORF7a	71	V71del	GTA	---	2	2	B.1.177.10	0.001756
ORF7a	71	V71del	GTA	---	2	2	B.1.177.55	0.004662
ORF7a	71	V71del	GTA	---	2	2	B.1.177.81	0.000379
ORF7a	71	V71del	GTA	---	2	2	B.1.177.82	0.000955
ORF7a	71	V71del	GTA	---	2	2	B.1.177.86	0.000367
ORF7a	71	V71del	GTA	---	2	2	B.1.190	0.02
ORF7a	71	V71I	Gta	Ata	2	2	B.1.221	0.000142
ORF7a	71	V71G	gTA	gGG	2	2	B.1.221.4	0.008333
ORF7a	71	V71del	GTA	---	2	2	B.1.240	0.000431
ORF7a	71	V71del	GTA	---	2	2	B.1.258.11	0.000793
ORF7a	71	V71L	Gta	Tta	2	2	B.1.258.12	0.015748
ORF7a	71	V71del2	gTA	g--	2	2	B.1.280	0.014286
ORF7a	71	V71del	GTA	---	2	2	B.1.349	0.00143
ORF7a	71	V71L	Gta	Tta	2	2	B.1.351	0.000059
ORF7a	71	V71del	GTA	---	2	2	B.1.356	0.003454
ORF7a	71	V71L	Gta	Tta	2	2	B.1.36.29	0.001035
ORF7a	71	V71del	GTA	---	2	2	B.1.36.9	0.006431
ORF7a	71	V71del	GTA	---	2	2	B.1.396	0.001411
ORF7a	71	V71V	gtA	gtG	2	2	B.1.400	0.000858
ORF7a	71	V71L	Gta	Tta	2	2	B.1.422	0.001625
ORF7a	71	V71L	Gta	Tta	2	2	B.1.427	0.000101
ORF7a	71	V71V	gtA	gtG	2	2	B.1.429	0.000047
ORF7a	71	V71L	Gta	Cta	1	2	B.1.429	0.000024
ORF7a	71	V71L	Gta	Tta	1	2	B.1.429	0.000024
ORF7a	71	V71del	GTA	---	2	2	B.1.499	0.002101
ORF7a	71	V71del	GTA	---	2	2	B.1.509	0.001732
ORF7a	71	V71del2	GTa	--a	2	2	B.1.526	0.000047
ORF7a	71	V71del	GTA	---	2	2	B.1.561	0.000794
ORF7a	71	V71L	Gta	Tta	2	2	B.1.596	0.000174
ORF7a	71	V71del	GTA	---	2	2	B.1.617.1	0.000258
ORF7a	71	V71del	GTA	---	2	2	B.1.621.1	0.001012
ORF7a	71	V71del1	gtA	gt-	2	2	B.1.627	0.00404
ORF7a	71	V71I	Gta	Ata	2	2	B.1.637	0.000146
ORF7a	71	V71del	GTA	---	2	2	C.36.3	0.001134
ORF7a	71	V71L	Gta	Tta	2	2	C.37	0.000232
ORF7a	71	V71del1	gtA	gt-	2	2	C.37	0.000232
ORF7a	71	V71A	gTa	gCa	2	2	P.1	0.000032
ORF7a	71	V71del	GTA	---	2	2	P.1.1	0.000635
ORF7a	71	V71del	GTA	---	2	2	P.1.12	0.000968
ORF7a	71	V71del	GTA	---	2	2	P.1.13	0.001797
ORF7a	71	V71del1	gtA	gt-	2	2	P.1.14	0.000096
ORF7a	71	V71del	GTA	---	2	2	P.1.17.1	0.00175
ORF7a	71	V71del	GTA	---	2	2	P.1.2	0.002312
ORF7a	71	V71del	GTA	---	2	2	Q.4	0.00091
ORF7a	71	V71V	gtA	gtT	1	1		0.055556
ORF7a	71	V71del	GTA	---	1	1	A.1	0.000282
ORF7a	71	V71V	gtA	gtG	1	1	A.2.4	0.003367
ORF7a	71	V71del	GTA	---	1	1	A.2.5	0.000499
ORF7a	71	V71I	Gta	Ata	1	1	A.2.5	0.000499
ORF7a	71	V71del	GTA	---	1	1	A.23	0.010526
ORF7a	71	V71del	GTA	---	1	1	AA.2	0.007692
ORF7a	71	V71Q	GTa	CAa	1	1	All	0
ORF7a	71	V71M	GtA	AtG	1	1	All	0
ORF7a	71	V71del	GTA	---	1	1	AU.3	0.00211
ORF7a	71	V71I	Gta	Ata	1	1	AW.1	0.003049
ORF7a	71	V71V	gtA	gtG	1	1	AY.1	0.000396
ORF7a	71	V71del	GTA	---	1	1	AY.101	0.00049
ORF7a	71	V71A	gTa	gCa	1	1	AY.103	0.000006
ORF7a	71	V71del	GTA	---	1	1	AY.104	0.001984
ORF7a	71	V71L	Gta	Tta	1	1	AY.106	0.000335
ORF7a	71	V71V	gtA	gtG	1	1	AY.113	0.000142
ORF7a	71	V71del2	GTa	--a	1	1	AY.113	0.000142
ORF7a	71	V71del1	gtA	gt-	1	1	AY.116	0.000287
ORF7a	71	V71del2	GTa	--a	1	1	AY.119	0.000035
ORF7a	71	V71del1	gtA	gt-	1	1	AY.119	0.000035
ORF7a	71	V71A	gTA	gCT	1	1	AY.119	0.000035
ORF7a	71	V71A	gTa	gCa	1	1	AY.120	0.000037
ORF7a	71	V71del1	Gta	-ta	1	1	AY.120	0.000037
ORF7a	71	V71V	gtA	gtC	1	1	AY.120	0.000037
ORF7a	71	V71del2	gTA	g--	1	1	AY.120.1	0.000321
ORF7a	71	V71del	GTA	---	1	1	AY.120.2.1	0.000498
ORF7a	71	V71I	Gta	Ata	1	1	AY.120.2.1	0.000498
ORF7a	71	V71L	Gta	Tta	1	1	AY.121	0.000135
ORF7a	71	V71L	Gta	Tta	1	1	AY.13	0.000161
ORF7a	71	V71del2	GTA	A--	1	1	AY.16	0.00038
ORF7a	71	V71L	Gta	Cta	1	1	AY.16	0.00038
ORF7a	71	V71del1	gtA	gt-	1	1	AY.20	0.000039
ORF7a	71	V71del2	GTa	--a	1	1	AY.20	0.000039
ORF7a	71	V71L	Gta	Tta	1	1	AY.21	0.001898
ORF7a	71	V71del	GTA	---	1	1	AY.22	0.002092
ORF7a	71	V71A	gTa	gCa	1	1	AY.23	0.00007
ORF7a	71	V71del2	GTa	--a	1	1	AY.23	0.00007
ORF7a	71	V71del1	gtA	gt-	1	1	AY.23	0.00007
ORF7a	71	V71G	gTa	gGa	1	1	AY.23	0.00007
ORF7a	71	V71del	GTA	---	1	1	AY.23.1	0.000417
ORF7a	71	V71L	Gta	Tta	1	1	AY.24	0.000431
ORF7a	71	V71T	GTa	ACa	1	1	AY.25	0.000006
ORF7a	71	V71del	GTA	---	1	1	AY.28	0.00189
ORF7a	71	V71I	Gta	Ata	1	1	AY.29.1	0.000221
ORF7a	71	V71K	GTa	AAa	1	1	AY.3	0.00001
ORF7a	71	V71N	GTA	AAT	1	1	AY.3.1	0.000085
ORF7a	71	V71del1	GtA	-tN	1	1	AY.3.1	0.000085
ORF7a	71	V71V	gtA	gtG	1	1	AY.3.1	0.000085
ORF7a	71	V71L	Gta	Tta	1	1	AY.3.1	0.000085
ORF7a	71	V71A	gTa	gCa	1	1	AY.3.1	0.000085
ORF7a	71	V71I	Gta	Ata	1	1	AY.32	0.000532
ORF7a	71	V71del	GTA	---	1	1	AY.32	0.000532
ORF7a	71	V71I	Gta	Ata	1	1	AY.34	0.000097
ORF7a	71	V71del2	GTa	--a	1	1	AY.37	0.000316
ORF7a	71	V71V	gtA	gtG	1	1	AY.37	0.000316
ORF7a	71	V71del1	GTa	-Aa	1	1	AY.38	0.000499
ORF7a	71	V71I	Gta	Ata	1	1	AY.38	0.000499
ORF7a	71	V71del	GTA	---	1	1	AY.38	0.000499
ORF7a	71	V71T	GTa	ACa	1	1	AY.39	0.000025
ORF7a	71	V71M	GtA	AtG	1	1	AY.39	0.000025
ORF7a	71	V71L	Gta	Tta	1	1	AY.39	0.000025
ORF7a	71	V71A	gTa	gCa	1	1	AY.39	0.000025
ORF7a	71	V71del	GTA	---	1	1	AY.39.2	0.001541
ORF7a	71	V71K	GTA	AAG	1	1	AY.4	0.000002
ORF7a	71	V71I	Gta	Ata	1	1	AY.4.1	0.000737
ORF7a	71	V71V	gtA	gtG	1	1	AY.4.2	0.000022
ORF7a	71	V71I	Gta	Ata	1	1	AY.4.2.1	0.000149
ORF7a	71	V71del2	GTa	--a	1	1	AY.4.2.1	0.000149
ORF7a	71	V71del	GTA	---	1	1	AY.4.3	0.000842
ORF7a	71	V71del2	gTA	g--	1	1	AY.4.4	0.000409
ORF7a	71	V71A	gTa	gCa	1	1	AY.42	0.00004
ORF7a	71	V71del1	gtA	gt-	1	1	AY.45	0.000122
ORF7a	71	V71L	Gta	Cta	1	1	AY.45	0.000122
ORF7a	71	V71V	gtA	gtG	1	1	AY.46.2	0.000635
ORF7a	71	V71del2	GTa	--a	1	1	AY.46.5	0.000198
ORF7a	71	V71L	Gta	Tta	1	1	AY.46.5	0.000198
ORF7a	71	V71V	gtA	gtG	1	1	AY.46.6	0.000072
ORF7a	71	V71A	gTa	gCa	1	1	AY.47	0.000031
ORF7a	71	V71I	Gta	Ata	1	1	AY.48	0.000465
ORF7a	71	V71I	Gta	Ata	1	1	AY.5.4	0.000277
ORF7a	71	V71I	Gta	Ata	1	1	AY.54	0.000095
ORF7a	71	V71T	GTa	ACa	1	1	AY.54	0.000095
ORF7a	71	V71I	Gta	Ata	1	1	AY.55	0.000917
ORF7a	71	V71V	gtA	gtT	1	1	AY.55	0.000917
ORF7a	71	V71A	gTa	gCa	1	1	AY.56	0.001605
ORF7a	71	V71del	GTA	---	1	1	AY.58	0.000907
ORF7a	71	V71R	GTA	AGG	1	1	AY.59	0.00053
ORF7a	71	V71V	gtA	gtT	1	1	AY.59	0.00053
ORF7a	71	V71I	Gta	Ata	1	1	AY.59	0.00053
ORF7a	71	V71del2	gTA	g--	1	1	AY.59	0.00053
ORF7a	71	V71I	Gta	Ata	1	1	AY.6	0.000041
ORF7a	71	V71A	gTa	gCa	1	1	AY.6	0.000041
ORF7a	71	V71del2	gTA	g--	1	1	AY.6	0.000041
ORF7a	71	V71L	Gta	Tta	1	1	AY.6	0.000041
ORF7a	71	V71V	gtA	gtT	1	1	AY.6	0.000041
ORF7a	71	V71I	Gta	Ata	1	1	AY.60	0.000938
ORF7a	71	V71L	Gta	Tta	1	1	AY.61	0.000105
ORF7a	71	V71del	GTA	---	1	1	AY.63	0.000387
ORF7a	71	V71I	Gta	Ata	1	1	AY.64	0.000595
ORF7a	71	V71L	Gta	Tta	1	1	AY.67	0.000464
ORF7a	71	V71del	GTA	---	1	1	AY.67	0.000464
ORF7a	71	V71I	Gta	Ata	1	1	AY.69	0.000187
ORF7a	71	V71E	gTa	gAa	1	1	AY.69	0.000187
ORF7a	71	V71L	Gta	Tta	1	1	AY.7	0.000196
ORF7a	71	V71del2	gTA	g--	1	1	AY.7	0.000196
ORF7a	71	V71V	gtA	gtG	1	1	AY.7.1	0.000113
ORF7a	71	V71del1	gtA	gt-	1	1	AY.7.1	0.000113
ORF7a	71	V71I	Gta	Ata	1	1	AY.7.2	0.000559
ORF7a	71	V71I	Gta	Ata	1	1	AY.70	0.000209
ORF7a	71	V71V	gtA	gtG	1	1	AY.71	0.000475
ORF7a	71	V71I	Gta	Ata	1	1	AY.72	0.001361
ORF7a	71	V71del2	GTa	--a	1	1	AY.74	0.000116
ORF7a	71	V71E	gTa	gAa	1	1	AY.75	0.000056
ORF7a	71	V71A	gTa	gCa	1	1	AY.75	0.000056
ORF7a	71	V71A	gTa	gCa	1	1	AY.75.1	0.00018
ORF7a	71	V71del	GTA	---	1	1	AY.78	0.001541
ORF7a	71	V71del	GTA	---	1	1	AY.81	0.001992
ORF7a	71	V71I	Gta	Ata	1	1	AY.84	0.000437
ORF7a	71	V71V	gtA	gtC	1	1	AY.85	0.000427
ORF7a	71	V71del2	gTA	g--	1	1	AY.87	0.000833
ORF7a	71	V71V	gtA	gtT	1	1	AY.87	0.000833
ORF7a	71	V71I	Gta	Ata	1	1	AY.88	0.000884
ORF7a	71	V71del	GTA	---	1	1	AY.89	0.004902
ORF7a	71	V71L	Gta	Tta	1	1	AY.89	0.004902
ORF7a	71	V71del2	GTa	--a	1	1	AY.9.1	0.000084
ORF7a	71	V71L	Gta	Tta	1	1	AY.9.2	0.000037
ORF7a	71	V71I	Gta	Ata	1	1	AY.90	0.000684
ORF7a	71	V71V	gtA	gtG	1	1	AY.91	0.00073
ORF7a	71	V71del	GTA	---	1	1	AY.94	0.000443
ORF7a	71	V71del2	gTA	g--	1	1	AY.95	0.000761
ORF7a	71	V71I	Gta	Ata	1	1	AY.96	0.002075
ORF7a	71	V71del1	gtA	gt-	1	1	AY.98	0.000079
ORF7a	71	V71del2	gTA	g--	1	1	AY.98	0.000079
ORF7a	71	V71I	Gta	Ata	1	1	AY.99	0.001049
ORF7a	71	V71L	Gta	Tta	1	1	AY.99	0.001049
ORF7a	71	V71del1	gtA	gt-	1	1	AY.99	0.001049
ORF7a	71	V71A	gTa	gCa	1	1	AY.99.2	0.000092
ORF7a	71	V71del1	gtA	gt-	1	1	AY.99.2	0.000092
ORF7a	71	V71L	Gta	Tta	1	1	AZ.5	0.003509
ORF7a	71	V71V	gtA	gtT	1	1	B	0.000128
ORF7a	71	V71del	GTA	---	1	1	B	0.000128
ORF7a	71	V71G	gTa	gGa	1	1	B.1	0.000009
ORF7a	71	V71A	gTa	gCa	1	1	B.1	0.000009
ORF7a	71	V71E	gTa	gAa	1	1	B.1	0.000009
ORF7a	71	V71V	gtA	gtT	1	1	B.1.1	0.000018
ORF7a	71	V71A	gTa	gCa	1	1	B.1.1	0.000018
ORF7a	71	V71del2	gTA	g--	1	1	B.1.1	0.000018
ORF7a	71	V71del	GTA	---	1	1	B.1.1.10	0.001115
ORF7a	71	V71I	Gta	Ata	1	1	B.1.1.113	0.006993
ORF7a	71	V71del	GTA	---	1	1	B.1.1.123	0.017857
ORF7a	71	V71del	GTA	---	1	1	B.1.1.135	0.004695
ORF7a	71	V71del	GTA	---	1	1	B.1.1.141	0.002012
ORF7a	71	V71G	gTa	gGa	1	1	B.1.1.153	0.001095
ORF7a	71	V71del	GTA	---	1	1	B.1.1.174	0.003378
ORF7a	71	V71del	GTA	---	1	1	B.1.1.194	0.00495
ORF7a	71	V71del	GTA	---	1	1	B.1.1.205	0.003717
ORF7a	71	V71del	GTA	---	1	1	B.1.1.207	0.001182
ORF7a	71	V71del	GTA	---	1	1	B.1.1.209	0.008929
ORF7a	71	V71del1	gtA	gt-	1	1	B.1.1.214	0.000055
ORF7a	71	V71L	Gta	Tta	1	1	B.1.1.216	0.00089
ORF7a	71	V71I	Gta	Ata	1	1	B.1.1.222	0.000204
ORF7a	71	V71V	gtA	gtT	1	1	B.1.1.229	0.005747
ORF7a	71	V71del	GTA	---	1	1	B.1.1.241	0.00207
ORF7a	71	V71del	GTA	---	1	1	B.1.1.253	0.002506
ORF7a	71	V71del	GTA	---	1	1	B.1.1.277	0.000759
ORF7a	71	V71V	gtA	gtG	1	1	B.1.1.284	0.000107
ORF7a	71	V71del1	Gta	-ta	1	1	B.1.1.284	0.000107
ORF7a	71	V71I	Gta	Ata	1	1	B.1.1.284	0.000107
ORF7a	71	V71del	GTA	---	1	1	B.1.1.298	0.000862
ORF7a	71	V71del	GTA	---	1	1	B.1.1.301	0.001179
ORF7a	71	V71del	GTA	---	1	1	B.1.1.315	0.008475
ORF7a	71	V71I	Gta	Ata	1	1	B.1.1.317	0.000412
ORF7a	71	V71del	GTA	---	1	1	B.1.1.317	0.000412
ORF7a	71	V71del2	gTA	g--	1	1	B.1.1.318	0.000302
ORF7a	71	V71L	Gta	Tta	1	1	B.1.1.318	0.000302
ORF7a	71	V71del2	GTa	--a	1	1	B.1.1.33	0.000421
ORF7a	71	V71L	Gta	Tta	1	1	B.1.1.33	0.000421
ORF7a	71	V71del	GTA	---	1	1	B.1.1.366	0.015873
ORF7a	71	V71del	GTA	---	1	1	B.1.1.383	0.0625
ORF7a	71	V71I	Gta	Ata	1	1	B.1.1.389	0.006061
ORF7a	71	V71V	gtA	gtG	1	1	B.1.1.39	0.00051
ORF7a	71	V71I	Gta	Ata	1	1	B.1.1.416	0.000905
ORF7a	71	V71I	Gta	Ata	1	1	B.1.1.420	0.001006
ORF7a	71	V71del1	Gta	-ta	1	1	B.1.1.432	0.001266
ORF7a	71	V71I	Gta	Ata	1	1	B.1.1.432	0.001266
ORF7a	71	V71del	GTA	---	1	1	B.1.1.432	0.001266
ORF7a	71	V71del	GTA	---	1	1	B.1.1.437	0.010417
ORF7a	71	V71V	gtA	gtC	1	1	B.1.1.448	0.002033
ORF7a	71	V71del2	GTa	--a	1	1	B.1.1.519	0.00004
ORF7a	71	V71del	GTA	---	1	1	B.1.1.523	0.001563
ORF7a	71	V71I	Gta	Ata	1	1	B.1.1.63	0.000386
ORF7a	71	V71R	GTa	CGa	1	1	B.1.1.7	0.000001
ORF7a	71	V71T	GTA	ACG	1	1	B.1.1.7	0.000001
ORF7a	71	V71E	gTa	gAa	1	1	B.1.1.7	0.000001
ORF7a	71	V71F	GtA	TtC	1	1	B.1.1.7	0.000001
ORF7a	71	V71del	GTA	---	1	1	B.1.1.70	0.000341
ORF7a	71	V71I	Gta	Ata	1	1	B.1.110.3	0.000718
ORF7a	71	V71del	GTA	---	1	1	B.1.115	0.021739
ORF7a	71	V71del	GTA	---	1	1	B.1.128	0.000635
ORF7a	71	V71E	gTa	gAa	1	1	B.1.147	0.000756
ORF7a	71	V71V	gtA	gtG	1	1	B.1.160	0.000031
ORF7a	71	V71del2	gTA	g--	1	1	B.1.177	0.000013
ORF7a	71	V71del1	gtA	gt-	1	1	B.1.177	0.000013
ORF7a	71	V71K	GTa	AAa	1	1	B.1.177	0.000013
ORF7a	71	V71del	GTA	---	1	1	B.1.177.16	0.000664
ORF7a	71	V71I	Gta	Ata	1	1	B.1.177.19	0.001431
ORF7a	71	V71L	Gta	Tta	1	1	B.1.177.21	0.000076
ORF7a	71	V71L	Gta	Tta	1	1	B.1.177.33	0.001645
ORF7a	71	V71del2	GTa	--a	1	1	B.1.177.4	0.000211
ORF7a	71	V71del	GTA	---	1	1	B.1.177.4	0.000211
ORF7a	71	V71L	Gta	Tta	1	1	B.1.177.44	0.000519
ORF7a	71	V71del	GTA	---	1	1	B.1.177.50	0.004695
ORF7a	71	V71del	GTA	---	1	1	B.1.177.60	0.000218
ORF7a	71	V71del	GTA	---	1	1	B.1.177.62	0.001192
ORF7a	71	V71E	gTa	gAa	1	1	B.1.177.63	0.002703
ORF7a	71	V71I	Gta	Ata	1	1	B.1.177.65	0.000665
ORF7a	71	V71I	Gta	Ata	1	1	B.1.177.75	0.001041
ORF7a	71	V71del	GTA	---	1	1	B.1.177.83	0.001481
ORF7a	71	V71N	GTA	AAT	1	1	B.1.2	0.000009
ORF7a	71	V71G	gTa	gGa	1	1	B.1.2	0.000009
ORF7a	71	V71A	gTa	gCa	1	1	B.1.2	0.000009
ORF7a	71	V71del	GTA	---	1	1	B.1.201	0.005682
ORF7a	71	V71del	GTA	---	1	1	B.1.206	0.000816
ORF7a	71	V71del	GTA	---	1	1	B.1.220	0.01087
ORF7a	71	V71E	gTa	gAa	1	1	B.1.223	0.002778
ORF7a	71	V71I	Gta	Ata	1	1	B.1.227	0.047619
ORF7a	71	V71del1	gtA	gt-	1	1	B.1.232	0.000537
ORF7a	71	V71del	GTA	---	1	1	B.1.236	0.002053
ORF7a	71	V71V	gtA	gtT	1	1	B.1.237	0.004975
ORF7a	71	V71V	gtA	gtT	1	1	B.1.258.11	0.000396
ORF7a	71	V71del1	Gta	-ta	1	1	B.1.258.9	0.005
ORF7a	71	V71del	GTA	---	1	1	B.1.265	0.001271
ORF7a	71	V71E	gTa	gAa	1	1	B.1.298	0.002114
ORF7a	71	V71del	GTA	---	1	1	B.1.319	0.003049
ORF7a	71	V71L	Gta	Tta	1	1	B.1.319	0.003049
ORF7a	71	V71I	Gta	Ata	1	1	B.1.340	0.004292
ORF7a	71	V71I	Gta	Ata	1	1	B.1.351	0.00003
ORF7a	71	V71del	GTA	---	1	1	B.1.351.3	0.000876
ORF7a	71	V71I	Gta	Ata	1	1	B.1.351.5	0.0006
ORF7a	71	V71L	Gta	Tta	1	1	B.1.36	0.000146
ORF7a	71	V71del	GTA	---	1	1	B.1.36.17	0.000494
ORF7a	71	V71L	Gta	Tta	1	1	B.1.36.18	0.00042
ORF7a	71	V71del	GTA	---	1	1	B.1.36.38	0.001642
ORF7a	71	V71del	GTA	---	1	1	B.1.371	0.001122
ORF7a	71	V71del	GTA	---	1	1	B.1.380	0.006623
ORF7a	71	V71V	gtA	gtG	1	1	B.1.389	0.001002
ORF7a	71	V71del	GTA	---	1	1	B.1.389	0.001002
ORF7a	71	V71L	Gta	Cta	1	1	B.1.399	0.001934
ORF7a	71	V71del1	gtA	gt-	1	1	B.1.400	0.000429
ORF7a	71	V71del	GTA	---	1	1	B.1.406	0.006061
ORF7a	71	V71I	Gta	Ata	1	1	B.1.408	0.00369
ORF7a	71	V71L	Gta	Tta	1	1	B.1.409	0.000781
ORF7a	71	V71del	GTA	---	1	1	B.1.415.1	0.007576
ORF7a	71	V71del	GTA	---	1	1	B.1.416	0.001269
ORF7a	71	V71del	GTA	---	1	1	B.1.416.1	0.001563
ORF7a	71	V71I	Gta	Ata	1	1	B.1.426	0.001009
ORF7a	71	V71del1	gtA	gt-	1	1	B.1.429	0.000024
ORF7a	71	V71del	GTA	---	1	1	B.1.433	0.003195
ORF7a	71	V71del	GTA	---	1	1	B.1.438.1	0.000107
ORF7a	71	V71del	GTA	---	1	1	B.1.443	0.004673
ORF7a	71	V71I	Gta	Ata	1	1	B.1.453	0.003236
ORF7a	71	V71del	GTA	---	1	1	B.1.459	0.004082
ORF7a	71	V71L	Gta	Tta	1	1	B.1.466.2	0.000391
ORF7a	71	V71A	gTa	gCa	1	1	B.1.466.2	0.000391
ORF7a	71	V71del	GTA	---	1	1	B.1.468	0.005714
ORF7a	71	V71del	GTA	---	1	1	B.1.470	0.001404
ORF7a	71	V71del	GTA	---	1	1	B.1.471	0.002732
ORF7a	71	V71V	gtA	gtC	1	1	B.1.497	0.000315
ORF7a	71	V71A	gTa	gCa	1	1	B.1.497	0.000315
ORF7a	71	V71Q	GTa	CAa	1	1	B.1.497	0.000315
ORF7a	71	V71I	Gta	Ata	1	1	B.1.517	0.000427
ORF7a	71	V71del	GTA	---	1	1	B.1.517	0.000427
ORF7a	71	V71I	Gta	Ata	1	1	B.1.530	0.007143
ORF7a	71	V71del	GTA	---	1	1	B.1.535	0.028571
ORF7a	71	V71I	Gta	Ata	1	1	B.1.540	0.009709
ORF7a	71	V71del	GTA	---	1	1	B.1.560	0.00463
ORF7a	71	V71del	GTA	---	1	1	B.1.564	0.000426
ORF7a	71	V71L	Gta	Tta	1	1	B.1.564	0.000426
ORF7a	71	V71del	GTA	---	1	1	B.1.564.1	0.001577
ORF7a	71	V71del	GTA	---	1	1	B.1.568	0.001111
ORF7a	71	V71I	Gta	Ata	1	1	B.1.568	0.001111
ORF7a	71	V71L	Gta	Tta	1	1	B.1.574	0.002151
ORF7a	71	V71del	GTA	---	1	1	B.1.576	0.000907
ORF7a	71	V71V	gtA	gtG	1	1	B.1.577	0.000687
ORF7a	71	V71del	GTA	---	1	1	B.1.582	0.000491
ORF7a	71	V71del	GTA	---	1	1	B.1.588	0.00091
ORF7a	71	V71del1	gtA	gt-	1	1	B.1.595	0.000261
ORF7a	71	V71A	gTa	gCa	1	1	B.1.596	0.000087
ORF7a	71	V71L	Gta	Tta	1	1	B.1.617.1	0.000129
ORF7a	71	V71del1	Gta	-ta	1	1	B.1.617.1	0.000129
ORF7a	71	V71G	gTa	gGa	1	1	B.1.617.2	0.000004
ORF7a	71	V71del	GTA	---	1	1	B.1.617.3	0.002985
ORF7a	71	V71L	Gta	Tta	1	1	B.1.621.1	0.000506
ORF7a	71	V71del	GTA	---	1	1	B.1.627	0.00202
ORF7a	71	V71I	Gta	Ata	1	1	B.1.628	0.000352
ORF7a	71	V71del2	GTA	A--	1	1	B.1.637	0.000073
ORF7a	71	V71del	GTA	---	1	1	B.1.638	0.052632
ORF7a	71	V71del	GTA	---	1	1	B.1.88.1	0.004808
ORF7a	71	V71del1	gtA	gt-	1	1	B.1.9	0.006173
ORF7a	71	V71del	GTA	---	1	1	B.1.9.1	0.032258
ORF7a	71	V71del	GTA	---	1	1	B.11	0.005128
ORF7a	71	V71del	GTA	---	1	1	B.40	0.000364
ORF7a	71	V71L	Gta	Tta	1	1	B.55	0.00295
ORF7a	71	V71G	gTa	gGa	1	1	B.6	0.00091
ORF7a	71	V71del	GTA	---	1	1	C.30	0.001727
ORF7a	71	V71del	GTA	---	1	1	C.36.3.1	0.002717
ORF7a	71	V71V	gtA	gtT	1	1	C.37	0.000116
ORF7a	71	V71L	Gta	Tta	1	1	D.2	0.000075
ORF7a	71	V71I	Gta	Ata	1	1	D.2	0.000075
ORF7a	71	V71I	Gta	Ata	1	1	N.4	0.004255
ORF7a	71	V71del	GTA	---	1	1	N.5	0.001767
ORF7a	71	V71I	Gta	Ata	1	1	N.5	0.001767
ORF7a	71	V71E	gTa	gAa	1	1	P.1	0.000016
ORF7a	71	V71del1	gtA	gt-	1	1	P.1	0.000016
ORF7a	71	V71del	GTA	---	1	1	P.1.10	0.000269
ORF7a	71	V71V	gtA	gtT	1	1	P.1.14	0.000048
ORF7a	71	V71I	Gta	Ata	1	1	P.1.14	0.000048
ORF7a	71	V71L	Gta	Tta	1	1	P.1.15	0.000232
ORF7a	71	V71del	GTA	---	1	1	P.1.16	0.000374
ORF7a	71	V71del	GTA	---	1	1	P.1.17	0.000162
ORF7a	71	V71del	GTA	---	1	1	P.1.3	0.034483
ORF7a	71	V71del	GTA	---	1	1	P.1.4	0.000977
ORF7a	71	V71del	GTA	---	1	1	P.1.8	0.004785
ORF7a	71	V71del2	gTA	g--	1	1	P.2	0.000187
ORF7a	71	V71V	gtA	gtT	1	1	Q.1	0.000126
ORF7a	71	V71del	GTA	---	1	1	Q.7	0.001111
ORF7a	71	V71del1	GTA	-NN	1	1	R.1	0.00009
ORF7a	71	V71I	Gta	Ata	1	1	R.1	0.00009
ORF7a	71	V71del2	GTa	--a	1	1	Z.1	0.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.