CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 68 | P68del | del | CCT | --- | 30502 | 30502 | 1 | 27595-27597 | |
ORF7a | 68 | P68P | syn | ccT | ccC | 1503 | 988 | 0.657352 | 27595-27597 | |
ORF7a | 68 | P68P | syn | ccT | ccA | 1503 | 422 | 0.280772 | 27595-27597 | |
ORF7a | 68 | P68P | syn | ccT | ccG | 1503 | 93 | 0.0618762 | 27595-27597 | |
ORF7a | 68 | P68L | nonsyn | cCt | cTt | 774 | 769 | 0.99354 | 27595-27597 | |
ORF7a | 68 | P68L | nonsyn | cCT | cTG | 774 | 3 | 0.00387597 | 27595-27597 | |
ORF7a | 68 | P68L | nonsyn | cCT | cTC | 774 | 1 | 0.00129199 | 27595-27597 | |
ORF7a | 68 | P68L | nonsyn | cCT | cTA | 774 | 1 | 0.00129199 | 27595-27597 | |
ORF7a | 68 | P68S | nonsyn | Cct | Tct | 539 | 534 | 0.990724 | 27595-27597 | |
ORF7a | 68 | P68S | nonsyn | CcT | TcA | 539 | 2 | 0.00371058 | 27595-27597 | |
ORF7a | 68 | P68S | nonsyn | CcT | TcC | 539 | 2 | 0.00371058 | 27595-27597 | |
ORF7a | 68 | P68S | nonsyn | CcT | TcG | 539 | 1 | 0.00185529 | 27595-27597 | |
ORF7a | 68 | P68H | nonsyn | cCt | cAt | 185 | 184 | 0.994595 | 27595-27597 | |
ORF7a | 68 | P68H | nonsyn | cCT | cAC | 185 | 1 | 0.00540541 | 27595-27597 | |
ORF7a | 68 | P68del2 | del | CCt | --t | 62 | 56 | 0.903226 | 27595-27597 | |
ORF7a | 68 | P68del2 | del | CCT | --N | 62 | 3 | 0.0483871 | 27595-27597 | |
ORF7a | 68 | P68del2 | del | cCT | c-- | 62 | 3 | 0.0483871 | 27595-27597 | |
ORF7a | 68 | P68del1 | del | Cct | -ct | 55 | 27 | 0.490909 | 27595-27597 | |
ORF7a | 68 | P68del1 | del | ccT | cc- | 55 | 24 | 0.436364 | 27595-27597 | |
ORF7a | 68 | P68del1 | del | CCT | -NN | 55 | 2 | 0.0363636 | 27595-27597 | |
ORF7a | 68 | P68del1 | del | CCT | NT- | 55 | 1 | 0.0181818 | 27595-27597 | |
ORF7a | 68 | P68del1 | del | CCt | -Gt | 55 | 1 | 0.0181818 | 27595-27597 | |
ORF7a | 68 | P68R | nonsyn | cCt | cGt | 30 | 28 | 0.933333 | 27595-27597 | |
ORF7a | 68 | P68R | nonsyn | cCT | cGA | 30 | 1 | 0.0333333 | 27595-27597 | |
ORF7a | 68 | P68R | nonsyn | cCT | cGC | 30 | 1 | 0.0333333 | 27595-27597 | |
ORF7a | 68 | P68T | nonsyn | Cct | Act | 26 | 25 | 0.961538 | 27595-27597 | |
ORF7a | 68 | P68T | nonsyn | CcT | AcA | 26 | 1 | 0.0384615 | 27595-27597 | |
ORF7a | 68 | P68C | nonsyn | CCt | TGt | 24 | 24 | 1 | 27595-27597 | |
ORF7a | 68 | P68V | nonsyn | CCT | GTC | 23 | 20 | 0.869565 | 27595-27597 | |
ORF7a | 68 | P68V | nonsyn | CCt | GTt | 23 | 3 | 0.130435 | 27595-27597 | |
ORF7a | 68 | P68A | nonsyn | Cct | Gct | 11 | 9 | 0.818182 | 27595-27597 | |
ORF7a | 68 | P68A | nonsyn | CcT | GcC | 11 | 1 | 0.0909091 | 27595-27597 | |
ORF7a | 68 | P68A | nonsyn | CcT | GcA | 11 | 1 | 0.0909091 | 27595-27597 | |
ORF7a | 68 | P68F | nonsyn | CCt | TTt | 5 | 4 | 0.8 | 27595-27597 | |
ORF7a | 68 | P68F | nonsyn | CCT | TTC | 5 | 1 | 0.2 | 27595-27597 | |
ORF7a | 68 | P68G | nonsyn | CCT | GGC | 4 | 2 | 0.5 | 27595-27597 | |
ORF7a | 68 | P68G | nonsyn | CCT | GGA | 4 | 1 | 0.25 | 27595-27597 | |
ORF7a | 68 | P68G | nonsyn | CCt | GGt | 4 | 1 | 0.25 | 27595-27597 | |
ORF7a | 68 | P68Q | nonsyn | cCT | cAA | 3 | 3 | 1 | 27595-27597 | |
ORF7a | 68 | P68I | nonsyn | CCt | ATt | 2 | 2 | 1 | 27595-27597 | |
ORF7a | 68 | P68D | nonsyn | CCT | GAC | 2 | 1 | 0.5 | 27595-27597 | |
ORF7a | 68 | P68X | nonsyn | CCT | TAA | 2 | 1 | 0.5 | 27595-27597 | |
ORF7a | 68 | P68X | nonsyn | CCT | TGA | 2 | 1 | 0.5 | 27595-27597 | |
ORF7a | 68 | P68D | nonsyn | CCt | GAt | 2 | 1 | 0.5 | 27595-27597 | |
ORF7a | 68 | P68K | nonsyn | CCT | AAA | 1 | 1 | 1 | 27595-27597 | |
ORF7a | 68 | P68Y | nonsyn | CCt | TAt | 1 | 1 | 1 | 27595-27597 | |
ORF7a | 68 | P68E | nonsyn | CCT | GAA | 1 | 1 | 1 | 27595-27597 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 68 | P68del | CCT | --- | 30502 | 30502 | All | 0.005834 |
ORF7a | 68 | P68del | CCT | --- | 12354 | 12354 | AY.4 | 0.019228 |
ORF7a | 68 | P68del | CCT | --- | 2711 | 2711 | B.1.617.2 | 0.010208 |
ORF7a | 68 | P68del | CCT | --- | 2537 | 2537 | AY.44 | 0.015442 |
ORF7a | 68 | P68del | CCT | --- | 2298 | 2298 | B.1.1.7 | 0.002057 |
ORF7a | 68 | P68P | ccT | ccC | 988 | 1503 | All | 0.000189 |
ORF7a | 68 | P68P | ccT | ccA | 422 | 1503 | All | 0.000081 |
ORF7a | 68 | P68P | ccT | ccG | 93 | 1503 | All | 0.000018 |
ORF7a | 68 | P68del | CCT | --- | 1187 | 1187 | AY.43 | 0.005259 |
ORF7a | 68 | P68del | CCT | --- | 1186 | 1186 | AY.25 | 0.007134 |
ORF7a | 68 | P68L | cCt | cTt | 769 | 774 | All | 0.000147 |
ORF7a | 68 | P68L | cCT | cTG | 3 | 774 | All | 0.000001 |
ORF7a | 68 | P68L | cCT | cTC | 1 | 774 | All | 0 |
ORF7a | 68 | P68L | cCT | cTA | 1 | 774 | All | 0 |
ORF7a | 68 | P68del | CCT | --- | 607 | 607 | AY.103 | 0.003769 |
ORF7a | 68 | P68del | CCT | --- | 589 | 589 | AY.3 | 0.005858 |
ORF7a | 68 | P68del | CCT | --- | 553 | 553 | AY.120 | 0.02056 |
ORF7a | 68 | P68S | Cct | Tct | 534 | 539 | All | 0.000102 |
ORF7a | 68 | P68S | CcT | TcC | 2 | 539 | All | 0 |
ORF7a | 68 | P68S | CcT | TcA | 2 | 539 | All | 0 |
ORF7a | 68 | P68S | CcT | TcG | 1 | 539 | All | 0 |
ORF7a | 68 | P68del | CCT | --- | 484 | 484 | AY.4.2 | 0.010497 |
ORF7a | 68 | P68del | CCT | --- | 448 | 448 | AY.3.1 | 0.038196 |
ORF7a | 68 | P68del | CCT | --- | 435 | 435 | AY.39 | 0.010749 |
ORF7a | 68 | P68P | ccT | ccC | 405 | 424 | B.1.1.7 | 0.000363 |
ORF7a | 68 | P68P | ccT | ccA | 13 | 424 | B.1.1.7 | 0.000012 |
ORF7a | 68 | P68P | ccT | ccG | 6 | 424 | B.1.1.7 | 0.000005 |
ORF7a | 68 | P68del | CCT | --- | 400 | 400 | AY.26 | 0.011324 |
ORF7a | 68 | P68del | CCT | --- | 261 | 261 | AY.102 | 0.00692 |
ORF7a | 68 | P68del | CCT | --- | 223 | 223 | AY.29 | 0.003518 |
ORF7a | 68 | P68P | ccT | ccA | 216 | 216 | B.1.1.318 | 0.065178 |
ORF7a | 68 | P68del | CCT | --- | 206 | 206 | B.1.351 | 0.006124 |
ORF7a | 68 | P68L | cCt | cTt | 188 | 188 | AY.4 | 0.000293 |
ORF7a | 68 | P68del | CCT | --- | 187 | 187 | B.1.177.21 | 0.0143 |
ORF7a | 68 | P68H | cCt | cAt | 184 | 185 | All | 0.000035 |
ORF7a | 68 | P68H | cCT | cAC | 1 | 185 | All | 0 |
ORF7a | 68 | P68L | cCt | cTt | 166 | 166 | B.1.1.7 | 0.000149 |
ORF7a | 68 | P68P | ccT | ccC | 163 | 164 | AY.44 | 0.000992 |
ORF7a | 68 | P68P | ccT | ccA | 1 | 164 | AY.44 | 0.000006 |
ORF7a | 68 | P68P | ccT | ccA | 153 | 158 | AY.25 | 0.00092 |
ORF7a | 68 | P68P | ccT | ccC | 5 | 158 | AY.25 | 0.00003 |
ORF7a | 68 | P68del | CCT | --- | 158 | 158 | AY.6 | 0.006498 |
ORF7a | 68 | P68del | CCT | --- | 138 | 138 | AY.100 | 0.006349 |
ORF7a | 68 | P68del | CCT | --- | 133 | 133 | B.1.2 | 0.001171 |
ORF7a | 68 | P68del | CCT | --- | 123 | 123 | B.1.526 | 0.002891 |
ORF7a | 68 | P68del | CCT | --- | 120 | 120 | AY.46.6 | 0.008665 |
ORF7a | 68 | P68L | cCt | cTt | 118 | 118 | B.1.617.2 | 0.000444 |
ORF7a | 68 | P68del | CCT | --- | 117 | 117 | AY.119 | 0.004131 |
ORF7a | 68 | P68del | CCT | --- | 112 | 112 | B.1.177 | 0.001475 |
ORF7a | 68 | P68P | ccT | ccC | 104 | 110 | B.1.1 | 0.001887 |
ORF7a | 68 | P68P | ccT | ccG | 4 | 110 | B.1.1 | 0.000073 |
ORF7a | 68 | P68P | ccT | ccA | 2 | 110 | B.1.1 | 0.000036 |
ORF7a | 68 | P68del | CCT | --- | 103 | 103 | AY.47 | 0.003204 |
ORF7a | 68 | P68del | CCT | --- | 92 | 92 | B.1 | 0.000843 |
ORF7a | 68 | P68del | CCT | --- | 89 | 89 | AY.5 | 0.001838 |
ORF7a | 68 | P68S | Cct | Tct | 89 | 89 | B.1.177.21 | 0.006806 |
ORF7a | 68 | P68del | CCT | --- | 85 | 85 | AY.46.4 | 0.013983 |
ORF7a | 68 | P68del | CCT | --- | 76 | 76 | P.1 | 0.001197 |
ORF7a | 68 | P68P | ccT | ccC | 70 | 70 | B.1.1.251 | 0.555556 |
ORF7a | 68 | P68del | CCT | --- | 64 | 64 | AY.113 | 0.009113 |
ORF7a | 68 | P68del | CCT | --- | 64 | 64 | B.1.621 | 0.005665 |
ORF7a | 68 | P68del | CCT | --- | 63 | 63 | AY.20 | 0.002449 |
ORF7a | 68 | P68del2 | CCt | --t | 56 | 62 | All | 0.000011 |
ORF7a | 68 | P68del2 | cCT | c-- | 3 | 62 | All | 0.000001 |
ORF7a | 68 | P68del2 | CCT | --N | 3 | 62 | All | 0.000001 |
ORF7a | 68 | P68del | CCT | --- | 61 | 61 | AY.75 | 0.003417 |
ORF7a | 68 | P68del | CCT | --- | 56 | 56 | AY.42 | 0.002253 |
ORF7a | 68 | P68del1 | Cct | -ct | 27 | 55 | All | 0.000005 |
ORF7a | 68 | P68del1 | ccT | cc- | 24 | 55 | All | 0.000005 |
ORF7a | 68 | P68del1 | CCT | -NN | 2 | 55 | All | 0 |
ORF7a | 68 | P68del1 | CCt | -Gt | 1 | 55 | All | 0 |
ORF7a | 68 | P68del1 | CCT | NT- | 1 | 55 | All | 0 |
ORF7a | 68 | P68L | cCt | cTt | 54 | 54 | AY.43 | 0.000239 |
ORF7a | 68 | P68del | CCT | --- | 53 | 53 | AY.23 | 0.003697 |
ORF7a | 68 | P68del | CCT | --- | 53 | 53 | AY.39.1 | 0.0021 |
ORF7a | 68 | P68P | ccT | ccC | 42 | 52 | AY.4 | 0.000065 |
ORF7a | 68 | P68P | ccT | ccG | 6 | 52 | AY.4 | 0.000009 |
ORF7a | 68 | P68P | ccT | ccA | 4 | 52 | AY.4 | 0.000006 |
ORF7a | 68 | P68del | CCT | --- | 50 | 50 | AY.46 | 0.005204 |
ORF7a | 68 | P68del | CCT | --- | 50 | 50 | B.1.1.284 | 0.00537 |
ORF7a | 68 | P68del | CCT | --- | 49 | 49 | AY.33 | 0.003272 |
ORF7a | 68 | P68del | CCT | --- | 49 | 49 | B.1.429 | 0.001153 |
ORF7a | 68 | P68H | cCt | cAt | 48 | 48 | AY.83 | 0.082759 |
ORF7a | 68 | P68P | ccT | ccC | 40 | 48 | B.1.617.2 | 0.000151 |
ORF7a | 68 | P68P | ccT | ccA | 6 | 48 | B.1.617.2 | 0.000023 |
ORF7a | 68 | P68P | ccT | ccG | 2 | 48 | B.1.617.2 | 0.000008 |
ORF7a | 68 | P68S | Cct | Tct | 46 | 46 | B.1.1.7 | 0.000041 |
ORF7a | 68 | P68del | CCT | --- | 44 | 44 | AY.117 | 0.003719 |
ORF7a | 68 | P68del | CCT | --- | 43 | 43 | AY.86 | 0.035685 |
ORF7a | 68 | P68del | CCT | --- | 42 | 42 | AY.107 | 0.019571 |
ORF7a | 68 | P68del | CCT | --- | 42 | 42 | B.1.160 | 0.00131 |
ORF7a | 68 | P68S | Cct | Tct | 40 | 40 | AY.103 | 0.000248 |
ORF7a | 68 | P68P | ccT | ccG | 31 | 39 | AY.43 | 0.000137 |
ORF7a | 68 | P68P | ccT | ccA | 5 | 39 | AY.43 | 0.000022 |
ORF7a | 68 | P68P | ccT | ccC | 3 | 39 | AY.43 | 0.000013 |
ORF7a | 68 | P68del | CCT | --- | 39 | 39 | B.1.637 | 0.00285 |
ORF7a | 68 | P68S | Cct | Tct | 37 | 38 | AY.4 | 0.000058 |
ORF7a | 68 | P68S | CcT | TcA | 1 | 38 | AY.4 | 0.000002 |
ORF7a | 68 | P68S | Cct | Tct | 38 | 38 | B.1.617.2 | 0.000143 |
ORF7a | 68 | P68del | CCT | --- | 37 | 37 | AY.45 | 0.004502 |
ORF7a | 68 | P68del | CCT | --- | 36 | 36 | B.1.1 | 0.000653 |
ORF7a | 68 | P68S | Cct | Tct | 35 | 35 | AY.43 | 0.000155 |
ORF7a | 68 | P68del | CCT | --- | 35 | 35 | AY.54 | 0.003337 |
ORF7a | 68 | P68del | CCT | --- | 35 | 35 | B.1.1.214 | 0.001941 |
ORF7a | 68 | P68del | CCT | --- | 35 | 35 | B.1.628 | 0.012333 |
ORF7a | 68 | P68del | CCT | --- | 35 | 35 | C.37 | 0.004062 |
ORF7a | 68 | P68del | CCT | --- | 34 | 34 | AY.98 | 0.002686 |
ORF7a | 68 | P68del | CCT | --- | 33 | 33 | AY.36 | 0.004891 |
ORF7a | 68 | P68del | CCT | --- | 33 | 33 | AY.37 | 0.01043 |
ORF7a | 68 | P68H | cCt | cAt | 32 | 32 | AY.4 | 0.00005 |
ORF7a | 68 | P68del | CCT | --- | 32 | 32 | AY.7 | 0.006272 |
ORF7a | 68 | P68del | CCT | --- | 31 | 31 | AY.34 | 0.003006 |
ORF7a | 68 | P68del | CCT | --- | 31 | 31 | AY.98.1 | 0.001501 |
ORF7a | 68 | P68R | cCt | cGt | 28 | 30 | All | 0.000005 |
ORF7a | 68 | P68R | cCT | cGA | 1 | 30 | All | 0 |
ORF7a | 68 | P68R | cCT | cGC | 1 | 30 | All | 0 |
ORF7a | 68 | P68del | CCT | --- | 30 | 30 | AY.5.4 | 0.008301 |
ORF7a | 68 | P68del | CCT | --- | 30 | 30 | AY.99.2 | 0.002765 |
ORF7a | 68 | P68del | CCT | --- | 29 | 29 | AY.118 | 0.001817 |
ORF7a | 68 | P68S | Cct | Tct | 29 | 29 | AY.44 | 0.000177 |
ORF7a | 68 | P68H | cCt | cAt | 29 | 29 | P.1 | 0.000457 |
ORF7a | 68 | P68del2 | CCt | --t | 28 | 28 | AY.60 | 0.026266 |
ORF7a | 68 | P68del | CCT | --- | 28 | 28 | AY.7.2 | 0.01566 |
ORF7a | 68 | P68T | Cct | Act | 25 | 26 | All | 0.000005 |
ORF7a | 68 | P68T | CcT | AcA | 1 | 26 | All | 0 |
ORF7a | 68 | P68S | Cct | Tct | 26 | 26 | AY.4.2 | 0.000564 |
ORF7a | 68 | P68del | CCT | --- | 26 | 26 | AY.9 | 0.001757 |
ORF7a | 68 | P68L | cCt | cTt | 26 | 26 | B.1.2 | 0.000229 |
ORF7a | 68 | P68del | CCT | --- | 25 | 25 | AY.110 | 0.002817 |
ORF7a | 68 | P68del | CCT | --- | 25 | 25 | AY.114 | 0.005778 |
ORF7a | 68 | P68del | CCT | --- | 25 | 25 | AY.121 | 0.003383 |
ORF7a | 68 | P68del | CCT | --- | 25 | 25 | B.1.1.519 | 0.000993 |
ORF7a | 68 | P68del | CCT | --- | 25 | 25 | B.1.596 | 0.002178 |
ORF7a | 68 | P68C | CCt | TGt | 24 | 24 | All | 0.000005 |
ORF7a | 68 | P68L | cCt | cTt | 24 | 24 | AY.25 | 0.000144 |
ORF7a | 68 | P68V | CCT | GTC | 20 | 23 | All | 0.000004 |
ORF7a | 68 | P68V | CCt | GTt | 3 | 23 | All | 0.000001 |
ORF7a | 68 | P68del | CCT | --- | 22 | 22 | AY.9.1 | 0.001842 |
ORF7a | 68 | P68del | CCT | --- | 22 | 22 | B.1.427 | 0.001111 |
ORF7a | 68 | P68del | CCT | --- | 22 | 22 | R.1 | 0.00198 |
ORF7a | 68 | P68del | CCT | --- | 21 | 21 | AY.9.2 | 0.000771 |
ORF7a | 68 | P68del | CCT | --- | 20 | 20 | AY.106 | 0.006698 |
ORF7a | 68 | P68H | cCt | cAt | 20 | 20 | B.1.617.2 | 0.000075 |
ORF7a | 68 | P68del | CCT | --- | 19 | 19 | AY.35 | 0.004428 |
ORF7a | 68 | P68del1 | ccT | cc- | 17 | 19 | AY.44 | 0.000103 |
ORF7a | 68 | P68del1 | Cct | -ct | 2 | 19 | AY.44 | 0.000012 |
ORF7a | 68 | P68P | ccT | ccG | 11 | 19 | AY.5 | 0.000227 |
ORF7a | 68 | P68P | ccT | ccC | 8 | 19 | AY.5 | 0.000165 |
ORF7a | 68 | P68del | CCT | --- | 19 | 19 | AY.61 | 0.001991 |
ORF7a | 68 | P68P | ccT | ccG | 19 | 19 | AY.9.2 | 0.000698 |
ORF7a | 68 | P68S | Cct | Tct | 19 | 19 | AY.98.1 | 0.00092 |
ORF7a | 68 | P68P | ccT | ccC | 18 | 18 | AY.119 | 0.000636 |
ORF7a | 68 | P68del | CCT | --- | 17 | 17 | AY.30 | 0.006727 |
ORF7a | 68 | P68S | Cct | Tct | 16 | 16 | B.1.1 | 0.00029 |
ORF7a | 68 | P68P | ccT | ccC | 15 | 16 | B.1.1.222 | 0.00306 |
ORF7a | 68 | P68P | ccT | ccA | 1 | 16 | B.1.1.222 | 0.000204 |
ORF7a | 68 | P68P | ccT | ccC | 16 | 16 | B.1.1.261 | 0.137931 |
ORF7a | 68 | P68del | CCT | --- | 15 | 15 | AY.111 | 0.002747 |
ORF7a | 68 | P68del | CCT | --- | 15 | 15 | AY.120.1 | 0.004815 |
ORF7a | 68 | P68del | CCT | --- | 15 | 15 | AY.87 | 0.01249 |
ORF7a | 68 | P68S | Cct | Tct | 15 | 15 | B.1.525 | 0.001697 |
ORF7a | 68 | P68L | cCt | cTt | 14 | 14 | AY.47 | 0.000435 |
ORF7a | 68 | P68P | ccT | ccC | 11 | 14 | B.1 | 0.000101 |
ORF7a | 68 | P68P | ccT | ccA | 3 | 14 | B.1 | 0.000027 |
ORF7a | 68 | P68del | CCT | --- | 14 | 14 | B.1.1.258 | 0.045603 |
ORF7a | 68 | P68del | CCT | --- | 13 | 13 | AY.116 | 0.003728 |
ORF7a | 68 | P68del | CCT | --- | 13 | 13 | AY.68 | 0.003559 |
ORF7a | 68 | P68S | Cct | Tct | 13 | 13 | B.1.526 | 0.000306 |
ORF7a | 68 | P68del | CCT | --- | 13 | 13 | P.1.14 | 0.000621 |
ORF7a | 68 | P68del | CCT | --- | 12 | 12 | AY.12 | 0.003793 |
ORF7a | 68 | P68del | CCT | --- | 12 | 12 | AY.14 | 0.001056 |
ORF7a | 68 | P68del | CCT | --- | 12 | 12 | AY.46.2 | 0.007624 |
ORF7a | 68 | P68del | CCT | --- | 12 | 12 | AY.84 | 0.005249 |
ORF7a | 68 | P68del | CCT | --- | 12 | 12 | AY.99 | 0.012592 |
ORF7a | 68 | P68del | CCT | --- | 12 | 12 | B.1.324 | 0.019262 |
ORF7a | 68 | P68A | Cct | Gct | 9 | 11 | All | 0.000002 |
ORF7a | 68 | P68A | CcT | GcC | 1 | 11 | All | 0 |
ORF7a | 68 | P68A | CcT | GcA | 1 | 11 | All | 0 |
ORF7a | 68 | P68L | cCt | cTt | 11 | 11 | AY.103 | 0.000068 |
ORF7a | 68 | P68del | CCT | --- | 11 | 11 | B.1.177.15 | 0.00694 |
ORF7a | 68 | P68S | Cct | Tct | 11 | 11 | B.1.177.16 | 0.007309 |
ORF7a | 68 | P68del | CCT | --- | 11 | 11 | B.1.234 | 0.001451 |
ORF7a | 68 | P68del | CCT | --- | 11 | 11 | Q.8 | 0.001814 |
ORF7a | 68 | P68R | cCt | cGt | 11 | 11 | R.1 | 0.00099 |
ORF7a | 68 | P68del | CCT | --- | 10 | 10 | AY.13 | 0.00161 |
ORF7a | 68 | P68S | Cct | Tct | 10 | 10 | AY.25 | 0.00006 |
ORF7a | 68 | P68C | CCt | TGt | 10 | 10 | AY.3.1 | 0.000853 |
ORF7a | 68 | P68L | cCt | cTt | 9 | 10 | AY.44 | 0.000055 |
ORF7a | 68 | P68L | cCT | cTG | 1 | 10 | AY.44 | 0.000006 |
ORF7a | 68 | P68del | CCT | --- | 10 | 10 | AY.46.5 | 0.001984 |
ORF7a | 68 | P68del | CCT | --- | 10 | 10 | AY.71 | 0.004751 |
ORF7a | 68 | P68del | CCT | --- | 10 | 10 | B.1.525 | 0.001132 |
ORF7a | 68 | P68H | cCt | cAt | 9 | 9 | AY.102 | 0.000239 |
ORF7a | 68 | P68P | ccT | ccC | 9 | 9 | AY.115 | 0.046875 |
ORF7a | 68 | P68L | cCt | cTt | 9 | 9 | AY.3 | 0.00009 |
ORF7a | 68 | P68del | CCT | --- | 9 | 9 | AY.4.2.1 | 0.001341 |
ORF7a | 68 | P68del | CCT | --- | 9 | 9 | AY.7.1 | 0.001014 |
ORF7a | 68 | P68del | CCT | --- | 9 | 9 | AY.74 | 0.001041 |
ORF7a | 68 | P68S | Cct | Tct | 9 | 9 | B.1.2 | 0.000079 |
ORF7a | 68 | P68P | ccT | ccG | 6 | 9 | B.1.2 | 0.000053 |
ORF7a | 68 | P68P | ccT | ccA | 2 | 9 | B.1.2 | 0.000018 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 9 | B.1.2 | 0.000009 |
ORF7a | 68 | P68del | CCT | --- | 9 | 9 | B.1.258.9 | 0.045 |
ORF7a | 68 | P68L | cCt | cTt | 9 | 9 | B.1.621 | 0.000797 |
ORF7a | 68 | P68del | CCT | --- | 9 | 9 | L.1 | 0.017143 |
ORF7a | 68 | P68S | Cct | Tct | 9 | 9 | P.1 | 0.000142 |
ORF7a | 68 | P68del | CCT | --- | 8 | 8 | AY.10 | 0.00424 |
ORF7a | 68 | P68del | CCT | --- | 8 | 8 | AY.4.5 | 0.00086 |
ORF7a | 68 | P68del | CCT | --- | 8 | 8 | B.1.1.231 | 0.024768 |
ORF7a | 68 | P68L | cCt | cTt | 8 | 8 | P.1 | 0.000126 |
ORF7a | 68 | P68del | CCT | --- | 8 | 8 | P.1.15 | 0.001859 |
ORF7a | 68 | P68del | CCT | --- | 7 | 7 | AY.19 | 0.007982 |
ORF7a | 68 | P68del2 | CCt | --t | 6 | 7 | AY.25 | 0.000036 |
ORF7a | 68 | P68del2 | CCT | --N | 1 | 7 | AY.25 | 0.000006 |
ORF7a | 68 | P68P | ccT | ccC | 7 | 7 | AY.3 | 0.00007 |
ORF7a | 68 | P68del | CCT | --- | 7 | 7 | AY.34.1 | 0.00357 |
ORF7a | 68 | P68del | CCT | --- | 7 | 7 | AY.49 | 0.022364 |
ORF7a | 68 | P68del | CCT | --- | 7 | 7 | AY.59 | 0.003708 |
ORF7a | 68 | P68L | cCt | cTt | 7 | 7 | B.1.240 | 0.001509 |
ORF7a | 68 | P68del | CCT | --- | 7 | 7 | B.1.243 | 0.000487 |
ORF7a | 68 | P68P | ccT | ccC | 6 | 6 | AY.100 | 0.000276 |
ORF7a | 68 | P68P | ccT | ccC | 4 | 6 | AY.120 | 0.000149 |
ORF7a | 68 | P68P | ccT | ccG | 2 | 6 | AY.120 | 0.000074 |
ORF7a | 68 | P68S | Cct | Tct | 6 | 6 | AY.120.1 | 0.001926 |
ORF7a | 68 | P68del | CCT | --- | 6 | 6 | AY.16 | 0.002278 |
ORF7a | 68 | P68del | CCT | --- | 6 | 6 | AY.29.1 | 0.001323 |
ORF7a | 68 | P68L | cCt | cTt | 6 | 6 | AY.39.1 | 0.000238 |
ORF7a | 68 | P68del | CCT | --- | 6 | 6 | AY.40 | 0.005786 |
ORF7a | 68 | P68L | cCt | cTt | 6 | 6 | AY.46.5 | 0.00119 |
ORF7a | 68 | P68del | CCT | --- | 6 | 6 | AY.65 | 0.003198 |
ORF7a | 68 | P68del | CCT | --- | 6 | 6 | AY.73 | 0.003992 |
ORF7a | 68 | P68L | cCt | cTt | 6 | 6 | AY.99.2 | 0.000553 |
ORF7a | 68 | P68L | cCt | cTt | 6 | 6 | B.1.1 | 0.000109 |
ORF7a | 68 | P68del | CCT | --- | 6 | 6 | B.1.1.33 | 0.002525 |
ORF7a | 68 | P68H | cCt | cAt | 6 | 6 | B.1.1.7 | 0.000005 |
ORF7a | 68 | P68del1 | Cct | -ct | 5 | 6 | B.1.1.7 | 0.000004 |
ORF7a | 68 | P68del1 | ccT | cc- | 1 | 6 | B.1.1.7 | 0.000001 |
ORF7a | 68 | P68del | CCT | --- | 6 | 6 | B.1.214.2 | 0.003597 |
ORF7a | 68 | P68del | CCT | --- | 5 | 5 | A | 0.001935 |
ORF7a | 68 | P68F | CCt | TTt | 4 | 5 | All | 0.000001 |
ORF7a | 68 | P68F | CCT | TTC | 1 | 5 | All | 0 |
ORF7a | 68 | P68S | Cct | Tct | 5 | 5 | AY.102 | 0.000133 |
ORF7a | 68 | P68del | CCT | --- | 5 | 5 | AY.109 | 0.003698 |
ORF7a | 68 | P68L | cCt | cTt | 5 | 5 | AY.20 | 0.000194 |
ORF7a | 68 | P68del | CCT | --- | 5 | 5 | AY.24 | 0.002155 |
ORF7a | 68 | P68del | CCT | --- | 5 | 5 | AY.27 | 0.000324 |
ORF7a | 68 | P68del | CCT | --- | 5 | 5 | AY.46.1 | 0.005133 |
ORF7a | 68 | P68del | CCT | --- | 5 | 5 | AY.62 | 0.002179 |
ORF7a | 68 | P68del | CCT | --- | 5 | 5 | AY.80 | 0.005643 |
ORF7a | 68 | P68S | Cct | Tct | 5 | 5 | AY.9.2 | 0.000184 |
ORF7a | 68 | P68del | CCT | --- | 5 | 5 | AY.91 | 0.003652 |
ORF7a | 68 | P68del | CCT | --- | 5 | 5 | AY.95 | 0.003805 |
ORF7a | 68 | P68S | Cct | Tct | 5 | 5 | B.1 | 0.000046 |
ORF7a | 68 | P68L | cCt | cTt | 4 | 5 | B.1 | 0.000037 |
ORF7a | 68 | P68L | cCT | cTA | 1 | 5 | B.1 | 0.000009 |
ORF7a | 68 | P68del | CCT | --- | 5 | 5 | B.1.1.56 | 0.089286 |
ORF7a | 68 | P68T | Cct | Act | 5 | 5 | B.1.1.7 | 0.000004 |
ORF7a | 68 | P68P | ccT | ccC | 5 | 5 | B.1.177 | 0.000066 |
ORF7a | 68 | P68del | CCT | --- | 5 | 5 | B.1.375 | 0.004098 |
ORF7a | 68 | P68S | Cct | Tct | 5 | 5 | B.1.438.1 | 0.000536 |
ORF7a | 68 | P68del | CCT | --- | 5 | 5 | B.1.595 | 0.001305 |
ORF7a | 68 | P68del | CCT | --- | 5 | 5 | B.1.623 | 0.002682 |
ORF7a | 68 | P68del | CCT | --- | 5 | 5 | B.1.70 | 0.121951 |
ORF7a | 68 | P68P | ccT | ccG | 3 | 5 | P.1 | 0.000047 |
ORF7a | 68 | P68P | ccT | ccA | 1 | 5 | P.1 | 0.000016 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 5 | P.1 | 0.000016 |
ORF7a | 68 | P68S | Cct | Tct | 5 | 5 | P.1.14 | 0.000239 |
ORF7a | 68 | P68del | CCT | --- | 5 | 5 | P.1.7 | 0.001596 |
ORF7a | 68 | P68del | CCT | --- | 5 | 5 | P.2 | 0.000933 |
ORF7a | 68 | P68del | CCT | --- | 5 | 5 | Q.1 | 0.000632 |
ORF7a | 68 | P68L | cCT | cTG | 2 | 4 | 0.111111 | |
ORF7a | 68 | P68L | cCT | cTC | 1 | 4 | 0.055556 | |
ORF7a | 68 | P68L | cCt | cTt | 1 | 4 | 0.055556 | |
ORF7a | 68 | P68G | CCT | GGC | 2 | 4 | All | 0 |
ORF7a | 68 | P68G | CCT | GGA | 1 | 4 | All | 0 |
ORF7a | 68 | P68G | CCt | GGt | 1 | 4 | All | 0 |
ORF7a | 68 | P68P | ccT | ccC | 4 | 4 | AY.116 | 0.001147 |
ORF7a | 68 | P68L | cCt | cTt | 4 | 4 | AY.119 | 0.000141 |
ORF7a | 68 | P68H | cCt | cAt | 4 | 4 | AY.120 | 0.000149 |
ORF7a | 68 | P68del | CCT | --- | 4 | 4 | AY.120.2 | 0.005141 |
ORF7a | 68 | P68del | CCT | --- | 4 | 4 | AY.2 | 0.001425 |
ORF7a | 68 | P68S | Cct | Tct | 4 | 4 | AY.20 | 0.000155 |
ORF7a | 68 | P68H | cCt | cAt | 4 | 4 | AY.23 | 0.000279 |
ORF7a | 68 | P68H | cCt | cAt | 4 | 4 | AY.3 | 0.00004 |
ORF7a | 68 | P68L | cCt | cTt | 4 | 4 | AY.39 | 0.000099 |
ORF7a | 68 | P68del | CCT | --- | 4 | 4 | AY.5.2 | 0.009852 |
ORF7a | 68 | P68del | CCT | --- | 4 | 4 | AY.5.3 | 0.00135 |
ORF7a | 68 | P68L | cCt | cTt | 4 | 4 | AY.52 | 0.003257 |
ORF7a | 68 | P68del | CCT | --- | 4 | 4 | AY.66 | 0.004278 |
ORF7a | 68 | P68L | cCt | cTt | 4 | 4 | AY.75 | 0.000224 |
ORF7a | 68 | P68del | CCT | --- | 4 | 4 | AY.88 | 0.003537 |
ORF7a | 68 | P68del | CCT | --- | 4 | 4 | AY.92 | 0.001149 |
ORF7a | 68 | P68del | CCT | --- | 4 | 4 | AY.93 | 0.001092 |
ORF7a | 68 | P68del | CCT | --- | 4 | 4 | B.1.1.1 | 0.001307 |
ORF7a | 68 | P68del | CCT | --- | 4 | 4 | B.1.1.164 | 0.020619 |
ORF7a | 68 | P68del | CCT | --- | 4 | 4 | B.1.1.37 | 0.000771 |
ORF7a | 68 | P68L | cCt | cTt | 4 | 4 | B.1.160.30 | 0.011905 |
ORF7a | 68 | P68S | Cct | Tct | 4 | 4 | B.1.177 | 0.000053 |
ORF7a | 68 | P68P | ccT | ccC | 4 | 4 | B.1.240 | 0.000862 |
ORF7a | 68 | P68del | CCT | --- | 4 | 4 | B.1.258 | 0.000266 |
ORF7a | 68 | P68L | cCt | cTt | 4 | 4 | B.1.351 | 0.000119 |
ORF7a | 68 | P68del | CCT | --- | 4 | 4 | B.1.351.2 | 0.00121 |
ORF7a | 68 | P68del | CCT | --- | 4 | 4 | B.1.36 | 0.000584 |
ORF7a | 68 | P68del | CCT | --- | 4 | 4 | B.1.466.2 | 0.001565 |
ORF7a | 68 | P68del | CCT | --- | 4 | 4 | B.1.577 | 0.002749 |
ORF7a | 68 | P68del1 | Cct | -ct | 4 | 4 | B.1.617.2 | 0.000015 |
ORF7a | 68 | P68S | Cct | Tct | 4 | 4 | B.1.621 | 0.000354 |
ORF7a | 68 | P68del | CCT | --- | 4 | 4 | D.2 | 0.0003 |
ORF7a | 68 | P68Q | cCT | cAA | 3 | 3 | All | 0.000001 |
ORF7a | 68 | P68L | cCt | cTt | 3 | 3 | AY.102 | 0.00008 |
ORF7a | 68 | P68del | CCT | --- | 3 | 3 | AY.105 | 0.001929 |
ORF7a | 68 | P68del | CCT | --- | 3 | 3 | AY.116.1 | 0.000934 |
ORF7a | 68 | P68S | Cct | Tct | 3 | 3 | AY.120 | 0.000112 |
ORF7a | 68 | P68P | ccT | ccC | 3 | 3 | AY.20 | 0.000117 |
ORF7a | 68 | P68R | cCt | cGt | 3 | 3 | AY.25 | 0.000018 |
ORF7a | 68 | P68L | cCt | cTt | 3 | 3 | AY.29 | 0.000047 |
ORF7a | 68 | P68del2 | CCt | --t | 3 | 3 | AY.3 | 0.00003 |
ORF7a | 68 | P68L | cCt | cTt | 3 | 3 | AY.36 | 0.000445 |
ORF7a | 68 | P68del2 | CCt | --t | 3 | 3 | AY.39.1 | 0.000119 |
ORF7a | 68 | P68T | Cct | Act | 3 | 3 | AY.4 | 0.000005 |
ORF7a | 68 | P68H | cCt | cAt | 2 | 3 | AY.43 | 0.000009 |
ORF7a | 68 | P68del1 | Cct | -ct | 2 | 3 | AY.43 | 0.000009 |
ORF7a | 68 | P68del1 | CCT | NT- | 1 | 3 | AY.43 | 0.000004 |
ORF7a | 68 | P68G | CCt | GGt | 1 | 3 | AY.43 | 0.000004 |
ORF7a | 68 | P68R | cCt | cGt | 1 | 3 | AY.43 | 0.000004 |
ORF7a | 68 | P68G | CCT | GGA | 1 | 3 | AY.43 | 0.000004 |
ORF7a | 68 | P68A | CcT | GcC | 1 | 3 | AY.43 | 0.000004 |
ORF7a | 68 | P68H | cCT | cAC | 1 | 3 | AY.43 | 0.000004 |
ORF7a | 68 | P68A | CcT | GcA | 1 | 3 | AY.43 | 0.000004 |
ORF7a | 68 | P68R | cCT | cGC | 1 | 3 | AY.43 | 0.000004 |
ORF7a | 68 | P68R | cCT | cGA | 1 | 3 | AY.43 | 0.000004 |
ORF7a | 68 | P68G | CCT | GGC | 1 | 3 | AY.43 | 0.000004 |
ORF7a | 68 | P68A | Cct | Gct | 1 | 3 | AY.43 | 0.000004 |
ORF7a | 68 | P68H | cCt | cAt | 3 | 3 | AY.44 | 0.000018 |
ORF7a | 68 | P68del1 | Cct | -ct | 1 | 3 | AY.46.6 | 0.000072 |
ORF7a | 68 | P68del1 | ccT | cc- | 1 | 3 | AY.46.6 | 0.000072 |
ORF7a | 68 | P68del1 | CCt | -Gt | 1 | 3 | AY.46.6 | 0.000072 |
ORF7a | 68 | P68del | CCT | --- | 3 | 3 | AY.48 | 0.001395 |
ORF7a | 68 | P68T | Cct | Act | 3 | 3 | AY.5 | 0.000062 |
ORF7a | 68 | P68del | CCT | --- | 3 | 3 | AY.64 | 0.001786 |
ORF7a | 68 | P68del | CCT | --- | 3 | 3 | AY.69 | 0.00056 |
ORF7a | 68 | P68S | Cct | Tct | 3 | 3 | AY.73 | 0.001996 |
ORF7a | 68 | P68del | CCT | --- | 3 | 3 | AY.85 | 0.001282 |
ORF7a | 68 | P68del | CCT | --- | 3 | 3 | AY.90 | 0.002053 |
ORF7a | 68 | P68H | cCt | cAt | 3 | 3 | AY.92 | 0.000862 |
ORF7a | 68 | P68V | CCT | GTC | 3 | 3 | B.1.1 | 0.000054 |
ORF7a | 68 | P68del | CCT | --- | 3 | 3 | B.1.1.121 | 0.007282 |
ORF7a | 68 | P68del | CCT | --- | 3 | 3 | B.1.1.189 | 0.004539 |
ORF7a | 68 | P68del | CCT | --- | 3 | 3 | B.1.1.222 | 0.000612 |
ORF7a | 68 | P68del | CCT | --- | 3 | 3 | B.1.1.25 | 0.001706 |
ORF7a | 68 | P68del | CCT | --- | 3 | 3 | B.1.1.318 | 0.000905 |
ORF7a | 68 | P68R | cCt | cGt | 3 | 3 | B.1.1.7 | 0.000003 |
ORF7a | 68 | P68del | CCT | --- | 3 | 3 | B.1.177.57 | 0.000843 |
ORF7a | 68 | P68del | CCT | --- | 3 | 3 | B.1.177.6 | 0.00293 |
ORF7a | 68 | P68del | CCT | --- | 3 | 3 | B.1.177.7 | 0.000495 |
ORF7a | 68 | P68del | CCT | --- | 3 | 3 | B.1.221 | 0.000213 |
ORF7a | 68 | P68del | CCT | --- | 3 | 3 | B.1.258.17 | 0.000312 |
ORF7a | 68 | P68del | CCT | --- | 3 | 3 | B.1.311 | 0.000824 |
ORF7a | 68 | P68V | CCT | GTC | 3 | 3 | B.1.36.1 | 0.003421 |
ORF7a | 68 | P68del | CCT | --- | 3 | 3 | B.1.36.36 | 0.001806 |
ORF7a | 68 | P68del | CCT | --- | 3 | 3 | B.1.369 | 0.000856 |
ORF7a | 68 | P68P | ccT | ccC | 3 | 3 | B.1.466.2 | 0.001174 |
ORF7a | 68 | P68del | CCT | --- | 3 | 3 | B.1.575 | 0.00091 |
ORF7a | 68 | P68del | CCT | --- | 3 | 3 | B.1.617.1 | 0.000387 |
ORF7a | 68 | P68del | CCT | --- | 3 | 3 | B.1.626 | 0.017143 |
ORF7a | 68 | P68S | Cct | Tct | 1 | 2 | 0.055556 | |
ORF7a | 68 | P68S | CcT | TcC | 1 | 2 | 0.055556 | |
ORF7a | 68 | P68F | CCt | TTt | 1 | 2 | 0.055556 | |
ORF7a | 68 | P68F | CCT | TTC | 1 | 2 | 0.055556 | |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | A.28 | 0.005291 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | AD.2 | 0.000438 |
ORF7a | 68 | P68I | CCt | ATt | 2 | 2 | All | 0 |
ORF7a | 68 | P68D | CCt | GAt | 1 | 2 | All | 0 |
ORF7a | 68 | P68D | CCT | GAC | 1 | 2 | All | 0 |
ORF7a | 68 | P68X | CCT | TGA | 1 | 2 | All | 0 |
ORF7a | 68 | P68X | CCT | TAA | 1 | 2 | All | 0 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | AY.1 | 0.000791 |
ORF7a | 68 | P68L | cCt | cTt | 2 | 2 | AY.100 | 0.000092 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | AY.101 | 0.000981 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 2 | AY.102 | 0.000027 |
ORF7a | 68 | P68P | ccT | ccA | 1 | 2 | AY.102 | 0.000027 |
ORF7a | 68 | P68C | CCt | TGt | 2 | 2 | AY.103 | 0.000012 |
ORF7a | 68 | P68del1 | Cct | -ct | 2 | 2 | AY.103 | 0.000012 |
ORF7a | 68 | P68H | cCt | cAt | 2 | 2 | AY.103 | 0.000012 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 2 | AY.103 | 0.000006 |
ORF7a | 68 | P68del2 | cCT | c-- | 1 | 2 | AY.103 | 0.000006 |
ORF7a | 68 | P68del2 | CCt | --t | 1 | 2 | AY.103 | 0.000006 |
ORF7a | 68 | P68P | ccT | ccA | 1 | 2 | AY.103 | 0.000006 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | AY.108 | 0.002205 |
ORF7a | 68 | P68L | cCt | cTt | 2 | 2 | AY.120 | 0.000074 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | AY.22 | 0.004184 |
ORF7a | 68 | P68L | cCt | cTt | 2 | 2 | AY.23 | 0.000139 |
ORF7a | 68 | P68T | Cct | Act | 2 | 2 | AY.24 | 0.000862 |
ORF7a | 68 | P68del1 | CCT | -NN | 1 | 2 | AY.25 | 0.000006 |
ORF7a | 68 | P68del1 | Cct | -ct | 1 | 2 | AY.25 | 0.000006 |
ORF7a | 68 | P68S | Cct | Tct | 2 | 2 | AY.26 | 0.000057 |
ORF7a | 68 | P68del2 | CCt | --t | 2 | 2 | AY.26 | 0.000057 |
ORF7a | 68 | P68C | CCt | TGt | 2 | 2 | AY.29 | 0.000032 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | AY.38 | 0.000999 |
ORF7a | 68 | P68del2 | CCt | --t | 2 | 2 | AY.39 | 0.000049 |
ORF7a | 68 | P68P | ccT | ccC | 2 | 2 | AY.39 | 0.000049 |
ORF7a | 68 | P68del2 | CCT | --N | 1 | 2 | AY.4 | 0.000002 |
ORF7a | 68 | P68del2 | CCt | --t | 1 | 2 | AY.4 | 0.000002 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 2 | AY.4.2.1 | 0.000149 |
ORF7a | 68 | P68P | ccT | ccA | 1 | 2 | AY.4.2.1 | 0.000149 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | AY.4.4 | 0.000818 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | AY.41 | 0.000588 |
ORF7a | 68 | P68del2 | CCt | --t | 2 | 2 | AY.43 | 0.000009 |
ORF7a | 68 | P68D | CCt | GAt | 1 | 2 | AY.43 | 0.000004 |
ORF7a | 68 | P68D | CCT | GAC | 1 | 2 | AY.43 | 0.000004 |
ORF7a | 68 | P68del2 | cCT | c-- | 1 | 2 | AY.44 | 0.000006 |
ORF7a | 68 | P68del2 | CCt | --t | 1 | 2 | AY.44 | 0.000006 |
ORF7a | 68 | P68P | ccT | ccC | 2 | 2 | AY.45 | 0.000243 |
ORF7a | 68 | P68P | ccT | ccC | 2 | 2 | AY.47 | 0.000062 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | AY.51 | 0.001818 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | AY.52 | 0.001629 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | AY.53 | 0.000575 |
ORF7a | 68 | P68S | Cct | Tct | 2 | 2 | AY.58 | 0.001815 |
ORF7a | 68 | P68P | ccT | ccC | 2 | 2 | AY.61 | 0.00021 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | AY.70 | 0.000417 |
ORF7a | 68 | P68P | ccT | ccC | 2 | 2 | AY.75 | 0.000112 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | AY.75.1 | 0.000361 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | AY.79 | 0.002421 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | AY.8 | 0.001212 |
ORF7a | 68 | P68S | Cct | Tct | 2 | 2 | AY.81 | 0.003984 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | AY.82 | 0.002714 |
ORF7a | 68 | P68L | cCt | cTt | 2 | 2 | AY.9.2 | 0.000073 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | AZ.2 | 0.001642 |
ORF7a | 68 | P68H | cCt | cAt | 2 | 2 | B.1 | 0.000018 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.1.101 | 0.02 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.1.163 | 0.015267 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.1.170 | 0.002494 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.1.192 | 0.004619 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 2 | B.1.1.214 | 0.000055 |
ORF7a | 68 | P68P | ccT | ccA | 1 | 2 | B.1.1.214 | 0.000055 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.1.220 | 0.003717 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.1.265 | 0.006309 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.1.303 | 0.005525 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.1.311 | 0.000716 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.1.317 | 0.000823 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.1.372 | 0.001377 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.1.432 | 0.002532 |
ORF7a | 68 | P68L | cCt | cTt | 2 | 2 | B.1.1.519 | 0.000079 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.1.521 | 0.010695 |
ORF7a | 68 | P68V | CCT | GTC | 2 | 2 | B.1.1.7 | 0.000002 |
ORF7a | 68 | P68C | CCt | TGt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF7a | 68 | P68S | Cct | Tct | 2 | 2 | B.1.110.3 | 0.001437 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.128 | 0.001271 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.139 | 0.001466 |
ORF7a | 68 | P68C | CCt | TGt | 2 | 2 | B.1.160 | 0.000062 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.160.16 | 0.001859 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.160.30 | 0.005952 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.177.10 | 0.001756 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.177.55 | 0.004662 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.177.81 | 0.000379 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.177.82 | 0.000955 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.177.86 | 0.000367 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.190 | 0.02 |
ORF7a | 68 | P68P | ccT | ccA | 2 | 2 | B.1.221.1 | 0.005814 |
ORF7a | 68 | P68S | Cct | Tct | 2 | 2 | B.1.221.4 | 0.008333 |
ORF7a | 68 | P68S | Cct | Tct | 2 | 2 | B.1.234 | 0.000264 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.240 | 0.000431 |
ORF7a | 68 | P68S | Cct | Tct | 2 | 2 | B.1.243 | 0.000139 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.258.11 | 0.000793 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.349 | 0.00143 |
ORF7a | 68 | P68V | CCT | GTC | 2 | 2 | B.1.351 | 0.000059 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.356 | 0.003454 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.36.9 | 0.006431 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.396 | 0.001411 |
ORF7a | 68 | P68S | Cct | Tct | 2 | 2 | B.1.439 | 0.011834 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.499 | 0.002101 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.561 | 0.000794 |
ORF7a | 68 | P68S | Cct | Tct | 2 | 2 | B.1.582 | 0.000981 |
ORF7a | 68 | P68S | CcT | TcA | 1 | 2 | B.1.617.1 | 0.000129 |
ORF7a | 68 | P68S | Cct | Tct | 1 | 2 | B.1.617.1 | 0.000129 |
ORF7a | 68 | P68V | CCt | GTt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF7a | 68 | P68T | CcT | AcA | 1 | 2 | B.1.617.2 | 0.000004 |
ORF7a | 68 | P68T | Cct | Act | 1 | 2 | B.1.617.2 | 0.000004 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | B.1.621.1 | 0.001012 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | C.36.3 | 0.001134 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | P.1.1 | 0.000635 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | P.1.13 | 0.001797 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | P.1.17.1 | 0.00175 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | P.1.2 | 0.002312 |
ORF7a | 68 | P68del | CCT | --- | 2 | 2 | Q.4 | 0.00091 |
ORF7a | 68 | P68P | ccT | ccC | 2 | 2 | Q.8 | 0.00033 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 1 | 0.055556 | |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | A.1 | 0.000282 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 1 | A.1 | 0.000282 |
ORF7a | 68 | P68T | Cct | Act | 1 | 1 | A.1 | 0.000282 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 1 | A.2.2 | 0.001689 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | A.2.5 | 0.000499 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | A.2.5 | 0.000499 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | A.23 | 0.010526 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | A.23.1 | 0.000704 |
ORF7a | 68 | P68del2 | cCT | c-- | 1 | 1 | AA.2 | 0.007692 |
ORF7a | 68 | P68Y | CCt | TAt | 1 | 1 | All | 0 |
ORF7a | 68 | P68K | CCT | AAA | 1 | 1 | All | 0 |
ORF7a | 68 | P68E | CCT | GAA | 1 | 1 | All | 0 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | AU.2 | 0.002421 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | AU.3 | 0.00211 |
ORF7a | 68 | P68S | Cct | Tct | 1 | 1 | AY.100 | 0.000046 |
ORF7a | 68 | P68A | Cct | Gct | 1 | 1 | AY.102 | 0.000027 |
ORF7a | 68 | P68T | Cct | Act | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | AY.104 | 0.001984 |
ORF7a | 68 | P68R | cCt | cGt | 1 | 1 | AY.108 | 0.001103 |
ORF7a | 68 | P68del1 | Cct | -ct | 1 | 1 | AY.108 | 0.001103 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | AY.11 | 0.001339 |
ORF7a | 68 | P68S | Cct | Tct | 1 | 1 | AY.110 | 0.000113 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | AY.111 | 0.000183 |
ORF7a | 68 | P68S | Cct | Tct | 1 | 1 | AY.114 | 0.000231 |
ORF7a | 68 | P68del2 | CCt | --t | 1 | 1 | AY.114 | 0.000231 |
ORF7a | 68 | P68del1 | ccT | cc- | 1 | 1 | AY.117 | 0.000085 |
ORF7a | 68 | P68S | Cct | Tct | 1 | 1 | AY.118 | 0.000063 |
ORF7a | 68 | P68S | Cct | Tct | 1 | 1 | AY.119 | 0.000035 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF7a | 68 | P68R | cCt | cGt | 1 | 1 | AY.121 | 0.000135 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | AY.13 | 0.000161 |
ORF7a | 68 | P68C | CCt | TGt | 1 | 1 | AY.16 | 0.00038 |
ORF7a | 68 | P68del1 | Cct | -ct | 1 | 1 | AY.20 | 0.000039 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 1 | AY.23 | 0.00007 |
ORF7a | 68 | P68del1 | Cct | -ct | 1 | 1 | AY.23 | 0.00007 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | AY.23.1 | 0.000417 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 1 | AY.23.1 | 0.000417 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | AY.24 | 0.000431 |
ORF7a | 68 | P68T | Cct | Act | 1 | 1 | AY.25 | 0.000006 |
ORF7a | 68 | P68A | Cct | Gct | 1 | 1 | AY.25 | 0.000006 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 1 | AY.26 | 0.000028 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 1 | AY.27 | 0.000065 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | AY.28 | 0.00189 |
ORF7a | 68 | P68P | ccT | ccG | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 68 | P68del1 | Cct | -ct | 1 | 1 | AY.3 | 0.00001 |
ORF7a | 68 | P68H | cCt | cAt | 1 | 1 | AY.3.1 | 0.000085 |
ORF7a | 68 | P68H | cCt | cAt | 1 | 1 | AY.32 | 0.000532 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | AY.32 | 0.000532 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 68 | P68S | Cct | Tct | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 68 | P68del2 | CCt | --t | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | AY.34 | 0.000097 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | AY.34.1 | 0.00051 |
ORF7a | 68 | P68del2 | CCT | --N | 1 | 1 | AY.36 | 0.000148 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | AY.37 | 0.000316 |
ORF7a | 68 | P68R | cCt | cGt | 1 | 1 | AY.37 | 0.000316 |
ORF7a | 68 | P68S | CcT | TcC | 1 | 1 | AY.39 | 0.000025 |
ORF7a | 68 | P68I | CCt | ATt | 1 | 1 | AY.39 | 0.000025 |
ORF7a | 68 | P68G | CCT | GGC | 1 | 1 | AY.39 | 0.000025 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | AY.39.2 | 0.001541 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | AY.39.2 | 0.001541 |
ORF7a | 68 | P68R | cCt | cGt | 1 | 1 | AY.4 | 0.000002 |
ORF7a | 68 | P68A | Cct | Gct | 1 | 1 | AY.4 | 0.000002 |
ORF7a | 68 | P68del1 | CCT | -NN | 1 | 1 | AY.4 | 0.000002 |
ORF7a | 68 | P68H | cCt | cAt | 1 | 1 | AY.4.1 | 0.000737 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | AY.4.1 | 0.000737 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | AY.4.2 | 0.000022 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | AY.4.3 | 0.000842 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 1 | AY.4.5 | 0.000107 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | AY.41 | 0.000294 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 1 | AY.42 | 0.00004 |
ORF7a | 68 | P68Q | cCT | cAA | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 68 | P68E | CCT | GAA | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 68 | P68C | CCt | TGt | 1 | 1 | AY.44 | 0.000006 |
ORF7a | 68 | P68T | Cct | Act | 1 | 1 | AY.44 | 0.000006 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | AY.45 | 0.000122 |
ORF7a | 68 | P68S | Cct | Tct | 1 | 1 | AY.46 | 0.000104 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | AY.46 | 0.000104 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 1 | AY.46.2 | 0.000635 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | AY.46.4 | 0.000165 |
ORF7a | 68 | P68S | Cct | Tct | 1 | 1 | AY.46.4 | 0.000165 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | AY.46.6 | 0.000072 |
ORF7a | 68 | P68del2 | CCt | --t | 1 | 1 | AY.46.6 | 0.000072 |
ORF7a | 68 | P68R | cCt | cGt | 1 | 1 | AY.46.6 | 0.000072 |
ORF7a | 68 | P68C | CCt | TGt | 1 | 1 | AY.47 | 0.000031 |
ORF7a | 68 | P68S | Cct | Tct | 1 | 1 | AY.5 | 0.000021 |
ORF7a | 68 | P68H | cCt | cAt | 1 | 1 | AY.5 | 0.000021 |
ORF7a | 68 | P68del2 | CCt | --t | 1 | 1 | AY.5 | 0.000021 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | AY.5.3 | 0.000337 |
ORF7a | 68 | P68S | Cct | Tct | 1 | 1 | AY.5.3 | 0.000337 |
ORF7a | 68 | P68S | Cct | Tct | 1 | 1 | AY.5.4 | 0.000277 |
ORF7a | 68 | P68A | Cct | Gct | 1 | 1 | AY.5.4 | 0.000277 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | AY.50 | 0.000799 |
ORF7a | 68 | P68V | CCt | GTt | 1 | 1 | AY.54 | 0.000095 |
ORF7a | 68 | P68R | cCt | cGt | 1 | 1 | AY.6 | 0.000041 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | AY.61 | 0.000105 |
ORF7a | 68 | P68H | cCt | cAt | 1 | 1 | AY.61 | 0.000105 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | AY.63 | 0.000387 |
ORF7a | 68 | P68H | cCt | cAt | 1 | 1 | AY.65 | 0.000533 |
ORF7a | 68 | P68del1 | Cct | -ct | 1 | 1 | AY.65 | 0.000533 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF7a | 68 | P68P | ccT | ccG | 1 | 1 | AY.67 | 0.000464 |
ORF7a | 68 | P68S | Cct | Tct | 1 | 1 | AY.7 | 0.000196 |
ORF7a | 68 | P68C | CCt | TGt | 1 | 1 | AY.7.1 | 0.000113 |
ORF7a | 68 | P68P | ccT | ccA | 1 | 1 | AY.72 | 0.001361 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | AY.74 | 0.000116 |
ORF7a | 68 | P68del1 | ccT | cc- | 1 | 1 | AY.74 | 0.000116 |
ORF7a | 68 | P68P | ccT | ccA | 1 | 1 | AY.75.1 | 0.00018 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | AY.78 | 0.001541 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | AY.81 | 0.001992 |
ORF7a | 68 | P68H | cCt | cAt | 1 | 1 | AY.84 | 0.000437 |
ORF7a | 68 | P68S | CcT | TcG | 1 | 1 | AY.85 | 0.000427 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | AY.85 | 0.000427 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | AY.89 | 0.004902 |
ORF7a | 68 | P68H | cCt | cAt | 1 | 1 | AY.9 | 0.000068 |
ORF7a | 68 | P68del1 | Cct | -ct | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 68 | P68H | cCt | cAt | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | AY.94 | 0.000443 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | AY.98 | 0.000079 |
ORF7a | 68 | P68H | cCt | cAt | 1 | 1 | AY.98 | 0.000079 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 1 | AY.98 | 0.000079 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B | 0.000128 |
ORF7a | 68 | P68T | Cct | Act | 1 | 1 | B | 0.000128 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | B | 0.000128 |
ORF7a | 68 | P68S | Cct | Tct | 1 | 1 | B | 0.000128 |
ORF7a | 68 | P68del2 | CCt | --t | 1 | 1 | B.1 | 0.000009 |
ORF7a | 68 | P68del1 | ccT | cc- | 1 | 1 | B.1 | 0.000009 |
ORF7a | 68 | P68X | CCT | TAA | 1 | 1 | B.1 | 0.000009 |
ORF7a | 68 | P68V | CCT | GTC | 1 | 1 | B.1 | 0.000009 |
ORF7a | 68 | P68F | CCt | TTt | 1 | 1 | B.1.1 | 0.000018 |
ORF7a | 68 | P68A | Cct | Gct | 1 | 1 | B.1.1 | 0.000018 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.1.10 | 0.001115 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.1.123 | 0.017857 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.1.135 | 0.004695 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 1 | B.1.1.135 | 0.004695 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.1.141 | 0.002012 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.1.174 | 0.003378 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | B.1.1.176 | 0.000439 |
ORF7a | 68 | P68V | CCT | GTC | 1 | 1 | B.1.1.189 | 0.001513 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.1.194 | 0.00495 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | B.1.1.198 | 0.001468 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.1.205 | 0.003717 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.1.209 | 0.008929 |
ORF7a | 68 | P68H | cCt | cAt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF7a | 68 | P68S | Cct | Tct | 1 | 1 | B.1.1.214 | 0.000055 |
ORF7a | 68 | P68A | Cct | Gct | 1 | 1 | B.1.1.214 | 0.000055 |
ORF7a | 68 | P68S | Cct | Tct | 1 | 1 | B.1.1.222 | 0.000204 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.1.241 | 0.00207 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.1.253 | 0.002506 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | B.1.1.274 | 0.005051 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.1.277 | 0.000759 |
ORF7a | 68 | P68S | Cct | Tct | 1 | 1 | B.1.1.279 | 0.001121 |
ORF7a | 68 | P68V | CCT | GTC | 1 | 1 | B.1.1.282 | 0.011628 |
ORF7a | 68 | P68S | Cct | Tct | 1 | 1 | B.1.1.291 | 0.000742 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.1.298 | 0.000862 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.1.301 | 0.001179 |
ORF7a | 68 | P68V | CCT | GTC | 1 | 1 | B.1.1.305 | 0.003861 |
ORF7a | 68 | P68H | cCt | cAt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF7a | 68 | P68A | Cct | Gct | 1 | 1 | B.1.1.326 | 0.001761 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.1.366 | 0.015873 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.1.383 | 0.0625 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 1 | B.1.1.420 | 0.001006 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.1.437 | 0.010417 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.1.523 | 0.001563 |
ORF7a | 68 | P68del1 | Cct | -ct | 1 | 1 | B.1.1.70 | 0.000341 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.115 | 0.021739 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | B.1.160 | 0.000031 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | B.1.160.9 | 0.007194 |
ORF7a | 68 | P68R | cCt | cGt | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 68 | P68H | cCt | cAt | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 68 | P68Q | cCT | cAA | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 68 | P68V | CCT | GTC | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF7a | 68 | P68S | Cct | Tct | 1 | 1 | B.1.177.18 | 0.00116 |
ORF7a | 68 | P68K | CCT | AAA | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7a | 68 | P68P | ccT | ccA | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7a | 68 | P68X | CCT | TGA | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7a | 68 | P68Q | cCT | cAA | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 1 | B.1.177.51 | 0.004566 |
ORF7a | 68 | P68T | Cct | Act | 1 | 1 | B.1.177.57 | 0.000281 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.177.60 | 0.000218 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | B.1.177.65 | 0.000665 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 1 | B.1.177.79 | 0.002342 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF7a | 68 | P68T | Cct | Act | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 68 | P68del1 | ccT | cc- | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 68 | P68H | cCt | cAt | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.201 | 0.005682 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.206 | 0.000816 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.220 | 0.01087 |
ORF7a | 68 | P68P | ccT | ccA | 1 | 1 | B.1.221 | 0.000071 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | B.1.221 | 0.000071 |
ORF7a | 68 | P68T | Cct | Act | 1 | 1 | B.1.221.4 | 0.004167 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.236 | 0.002053 |
ORF7a | 68 | P68V | CCT | GTC | 1 | 1 | B.1.242 | 0.018868 |
ORF7a | 68 | P68del1 | ccT | cc- | 1 | 1 | B.1.243 | 0.00007 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | B.1.258 | 0.000067 |
ORF7a | 68 | P68S | Cct | Tct | 1 | 1 | B.1.258 | 0.000067 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 1 | B.1.258.14 | 0.00098 |
ORF7a | 68 | P68P | ccT | ccA | 1 | 1 | B.1.258.17 | 0.000104 |
ORF7a | 68 | P68Y | CCt | TAt | 1 | 1 | B.1.258.9 | 0.005 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.265 | 0.001271 |
ORF7a | 68 | P68H | cCt | cAt | 1 | 1 | B.1.311 | 0.000275 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 1 | B.1.320 | 0.001245 |
ORF7a | 68 | P68P | ccT | ccA | 1 | 1 | B.1.351 | 0.00003 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.351.3 | 0.000876 |
ORF7a | 68 | P68V | CCT | GTC | 1 | 1 | B.1.36 | 0.000146 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | B.1.36 | 0.000146 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.36.17 | 0.000494 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.36.35 | 0.002604 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.36.38 | 0.001642 |
ORF7a | 68 | P68R | cCt | cGt | 1 | 1 | B.1.367 | 0.000792 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.371 | 0.001122 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.380 | 0.006623 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.389 | 0.001002 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | B.1.396 | 0.000706 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.406 | 0.006061 |
ORF7a | 68 | P68del1 | Cct | -ct | 1 | 1 | B.1.409 | 0.000781 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.416 | 0.001269 |
ORF7a | 68 | P68I | CCt | ATt | 1 | 1 | B.1.416 | 0.001269 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF7a | 68 | P68P | ccT | ccA | 1 | 1 | B.1.416.1 | 0.001563 |
ORF7a | 68 | P68P | ccT | ccA | 1 | 1 | B.1.427 | 0.00005 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | B.1.428 | 0.00102 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 1 | B.1.429 | 0.000024 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | B.1.429 | 0.000024 |
ORF7a | 68 | P68T | Cct | Act | 1 | 1 | B.1.429 | 0.000024 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.433 | 0.003195 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | B.1.433 | 0.003195 |
ORF7a | 68 | P68V | CCT | GTC | 1 | 1 | B.1.438 | 0.006536 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.438.1 | 0.000107 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.443 | 0.004673 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.459 | 0.004082 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF7a | 68 | P68V | CCT | GTC | 1 | 1 | B.1.469 | 0.00361 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.470 | 0.001404 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.471 | 0.002732 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | B.1.497 | 0.000315 |
ORF7a | 68 | P68P | ccT | ccG | 1 | 1 | B.1.497 | 0.000315 |
ORF7a | 68 | P68F | CCt | TTt | 1 | 1 | B.1.497 | 0.000315 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | B.1.503 | 0.002488 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.509 | 0.000866 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | B.1.517 | 0.000427 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.517 | 0.000427 |
ORF7a | 68 | P68V | CCT | GTC | 1 | 1 | B.1.525 | 0.000113 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.535 | 0.028571 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.545 | 0.014493 |
ORF7a | 68 | P68S | Cct | Tct | 1 | 1 | B.1.546 | 0.003704 |
ORF7a | 68 | P68P | ccT | ccA | 1 | 1 | B.1.551 | 0.00129 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.560 | 0.00463 |
ORF7a | 68 | P68S | Cct | Tct | 1 | 1 | B.1.564 | 0.000426 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.564 | 0.000426 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.564.1 | 0.001577 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.568 | 0.001111 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 1 | B.1.574 | 0.002151 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.576 | 0.000907 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.582 | 0.000491 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 1 | B.1.582 | 0.000491 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.588 | 0.00091 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 1 | B.1.595 | 0.000261 |
ORF7a | 68 | P68S | Cct | Tct | 1 | 1 | B.1.596 | 0.000087 |
ORF7a | 68 | P68del1 | Cct | -ct | 1 | 1 | B.1.596 | 0.000087 |
ORF7a | 68 | P68T | Cct | Act | 1 | 1 | B.1.609 | 0.000479 |
ORF7a | 68 | P68T | Cct | Act | 1 | 1 | B.1.612 | 0.002653 |
ORF7a | 68 | P68del1 | Cct | -ct | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 68 | P68R | cCt | cGt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 68 | P68R | cCt | cGt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 68 | P68del2 | CCt | --t | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 68 | P68F | CCt | TTt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.627 | 0.00202 |
ORF7a | 68 | P68H | cCt | cAt | 1 | 1 | B.1.628 | 0.000352 |
ORF7a | 68 | P68C | CCt | TGt | 1 | 1 | B.1.637 | 0.000073 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | B.1.637 | 0.000073 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.88.1 | 0.004808 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.1.9.1 | 0.032258 |
ORF7a | 68 | P68S | Cct | Tct | 1 | 1 | B.11 | 0.005128 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.11 | 0.005128 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | B.11 | 0.005128 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | B.40 | 0.000364 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 1 | C.16 | 0.00106 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | C.30 | 0.001727 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | C.36.3.1 | 0.002717 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | C.37 | 0.000116 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 1 | C.37 | 0.000116 |
ORF7a | 68 | P68P | ccT | ccC | 1 | 1 | D.2 | 0.000075 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | K.3 | 0.006173 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | N.5 | 0.001767 |
ORF7a | 68 | P68C | CCt | TGt | 1 | 1 | P.1 | 0.000016 |
ORF7a | 68 | P68del2 | CCt | --t | 1 | 1 | P.1 | 0.000016 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | P.1.10 | 0.000269 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | P.1.12 | 0.000484 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | P.1.14 | 0.000048 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | P.1.15 | 0.000232 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | P.1.16 | 0.000374 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | P.1.17 | 0.000162 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | P.1.17 | 0.000162 |
ORF7a | 68 | P68A | Cct | Gct | 1 | 1 | P.1.17.1 | 0.000875 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | P.1.3 | 0.034483 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | P.1.4 | 0.000977 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | P.1.8 | 0.004785 |
ORF7a | 68 | P68L | cCt | cTt | 1 | 1 | Q.1 | 0.000126 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | Q.7 | 0.001111 |
ORF7a | 68 | P68del | CCT | --- | 1 | 1 | Z.1 | 0.00289 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|