CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 62

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a62Q62XnonsynCaaTaa38426384200.99984427577-27579
ORF7a62Q62XnonsynCaATaG3842640.00010409627577-27579
ORF7a62Q62XnonsynCAaTGa3842620.000052048127577-27579
ORF7a62Q62deldelCAA---3512435124127577-27579
ORF7a62Q62HnonsyncaAcaT602157590.95648627577-27579
ORF7a62Q62HnonsyncaAcaC60212620.043514427577-27579
ORF7a62Q62del1delcaAca-251015180.60478127577-27579
ORF7a62Q62del1delCaa-aa25108250.32868527577-27579
ORF7a62Q62del1delcAac-a2510830.033067727577-27579
ORF7a62Q62del1delCAaT-a2510500.019920327577-27579
ORF7a62Q62del1delCaATa-2510190.0075697227577-27579
ORF7a62Q62del1delCAa-Na251060.0023904427577-27579
ORF7a62Q62del1delCAA-NN251050.0019920327577-27579
ORF7a62Q62del1delcAAc-N251020.00079681327577-27579
ORF7a62Q62del1delCAa-Ga251010.00039840627577-27579
ORF7a62Q62del1delCAAT-T251010.00039840627577-27579
ORF7a62Q62del2delcAAc--250915950.63571127577-27579
ORF7a62Q62del2delCAa--a25097810.31127927577-27579
ORF7a62Q62del2delCAAT--2509950.037863727577-27579
ORF7a62Q62del2delCAA--G2509200.007971327577-27579
ORF7a62Q62del2delCAA--N2509160.0063770427577-27579
ORF7a62Q62del2delCAA--T250920.0007971327577-27579
ORF7a62Q62QsyncaAcaG21432143127577-27579
ORF7a62Q62RnonsyncAacGa4884760.9754127577-27579
ORF7a62Q62RnonsyncAAcGC48840.0081967227577-27579
ORF7a62Q62RnonsynCAaAGa48830.0061475427577-27579
ORF7a62Q62RnonsyncAAcGT48830.0061475427577-27579
ORF7a62Q62RnonsyncAAcGG48820.0040983627577-27579
ORF7a62Q62LnonsyncAacTa4644550.98060327577-27579
ORF7a62Q62LnonsyncAAcTG46430.0064655227577-27579
ORF7a62Q62LnonsynCAaTTa46430.0064655227577-27579
ORF7a62Q62LnonsyncAAcTT46420.0043103427577-27579
ORF7a62Q62LnonsynCAATTG46410.0021551727577-27579
ORF7a62Q62EnonsynCaaGaa140140127577-27579
ORF7a62Q62YnonsynCaATaT1381360.98550727577-27579
ORF7a62Q62YnonsynCaATaC13820.014492827577-27579
ORF7a62Q62KnonsynCaaAaa1041010.97115427577-27579
ORF7a62Q62KnonsynCaAAaG10430.028846227577-27579
ORF7a62Q62PnonsyncAacCa17130.76470627577-27579
ORF7a62Q62PnonsyncAAcCT1740.23529427577-27579
ORF7a62Q62SnonsynCAaTCa1250.41666727577-27579
ORF7a62Q62SnonsynCAATCT1240.33333327577-27579
ORF7a62Q62SnonsynCAATCC1220.16666727577-27579
ORF7a62Q62SnonsynCAATCG1210.083333327577-27579
ORF7a62Q62DnonsynCaAGaC1090.927577-27579
ORF7a62Q62DnonsynCaAGaT1010.127577-27579
ORF7a62Q62NnonsynCaAAaT860.7527577-27579
ORF7a62Q62TnonsynCAAACT830.37527577-27579
ORF7a62Q62TnonsynCAaACa820.2527577-27579
ORF7a62Q62NnonsynCaAAaC820.2527577-27579
ORF7a62Q62TnonsynCAAACG820.2527577-27579
ORF7a62Q62TnonsynCAAACC810.12527577-27579
ORF7a62Q62FnonsynCAATTT640.66666727577-27579
ORF7a62Q62FnonsynCAATTC620.33333327577-27579
ORF7a62Q62CnonsynCAATGC33127577-27579
ORF7a62Q62InonsynCAAATT320.66666727577-27579
ORF7a62Q62InonsynCAAATC310.33333327577-27579
ORF7a62Q62AnonsynCAAGCC210.527577-27579
ORF7a62Q62AnonsynCAAGCT210.527577-27579
ORF7a62Q62VnonsynCAAGTC210.527577-27579
ORF7a62Q62VnonsynCAAGTT210.527577-27579
ORF7a62Q62MnonsynCAAATG11127577-27579

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a62Q62XCaaTaa3842038426All0.007348
ORF7a62Q62XCaATaG438426All0.000001
ORF7a62Q62XCAaTGa238426All0
ORF7a62Q62delCAA---3512435124All0.006718
ORF7a62Q62XCaaTaa3072330723B.1.1.70.027504
ORF7a62Q62delCAA---1252812528AY.40.019499
ORF7a62Q62HcaAcaT57596021All0.001101
ORF7a62Q62HcaAcaC2626021All0.00005
ORF7a62Q62delCAA---46974697B.1.1.70.004205
ORF7a62Q62delCAA---35463546B.1.617.20.013352
ORF7a62Q62del1caAca-15182510All0.00029
ORF7a62Q62del1Caa-aa8252510All0.000158
ORF7a62Q62del1cAac-a832510All0.000016
ORF7a62Q62del1CAaT-a502510All0.00001
ORF7a62Q62del1CaATa-192510All0.000004
ORF7a62Q62del1CAa-Na62510All0.000001
ORF7a62Q62del1CAA-NN52510All0.000001
ORF7a62Q62del1cAAc-N22510All0
ORF7a62Q62del1CAa-Ga12510All0
ORF7a62Q62del1CAAT-T12510All0
ORF7a62Q62del2cAAc--15952509All0.000305
ORF7a62Q62del2CAa--a7812509All0.000149
ORF7a62Q62del2CAAT--952509All0.000018
ORF7a62Q62del2CAA--G202509All0.000004
ORF7a62Q62del2CAA--N162509All0.000003
ORF7a62Q62del2CAA--T22509All0
ORF7a62Q62QcaAcaG21432143All0.00041
ORF7a62Q62QcaAcaG20042004B.1.1.70.001794
ORF7a62Q62delCAA---16171617AY.120.10.519101
ORF7a62Q62delCAA---15181518AY.250.00913
ORF7a62Q62XCaaTaa12481248AY.40.001942
ORF7a62Q62del1caAca-7691106AY.40.001197
ORF7a62Q62del1Caa-aa3271106AY.40.000509
ORF7a62Q62del1cAac-a61106AY.40.000009
ORF7a62Q62del1CAa-Na31106AY.40.000005
ORF7a62Q62del1CAA-NN11106AY.40.000002
ORF7a62Q62delCAA---10641064AY.430.004714
ORF7a62Q62delCAA---932932AY.1030.005787
ORF7a62Q62XCaaTaa849850AY.250.005107
ORF7a62Q62XCaATaG1850AY.250.000006
ORF7a62Q62XCaaTaa797798B.1.617.20.003001
ORF7a62Q62XCAaTGa1798B.1.617.20.000004
ORF7a62Q62HcaAcaT712727AY.40.001108
ORF7a62Q62HcaAcaC15727AY.40.000023
ORF7a62Q62HcaAcaT712727B.1.1.70.000637
ORF7a62Q62HcaAcaC15727B.1.1.70.000013
ORF7a62Q62delCAA---701701AY.440.004267
ORF7a62Q62del2CAa--a429697AY.40.000668
ORF7a62Q62del2cAAc--268697AY.40.000417
ORF7a62Q62XCaaTaa607607AY.1000.027926
ORF7a62Q62delCAA---547547AY.30.005441
ORF7a62Q62RcAacGa476488All0.000091
ORF7a62Q62RcAAcGC4488All0.000001
ORF7a62Q62RCAaAGa3488All0.000001
ORF7a62Q62RcAAcGT3488All0.000001
ORF7a62Q62RcAAcGG2488All0
ORF7a62Q62LcAacTa455464All0.000087
ORF7a62Q62LCAaTTa3464All0.000001
ORF7a62Q62LcAAcTG3464All0.000001
ORF7a62Q62LcAAcTT2464All0
ORF7a62Q62LCAATTG1464All0
ORF7a62Q62HcaAcaT444444B.1.36.250.980132
ORF7a62Q62delCAA---436436AY.260.012343
ORF7a62Q62HcaAcaT341430AY.430.001511
ORF7a62Q62HcaAcaC89430AY.430.000394
ORF7a62Q62XCaaTaa422422AY.39.10.016717
ORF7a62Q62delCAA---417417AY.390.010305
ORF7a62Q62HcaAcaT367367AY.23.10.153172
ORF7a62Q62delCAA---344344AY.1020.009121
ORF7a62Q62XCaaTaa327327AY.440.00199
ORF7a62Q62HcaAcaT291291B.1.2340.038396
ORF7a62Q62delCAA---280280AY.46.50.055556
ORF7a62Q62del2cAAc--218276B.1.1.70.000195
ORF7a62Q62del2CAa--a35276B.1.1.70.000031
ORF7a62Q62del2CAA--G20276B.1.1.70.000018
ORF7a62Q62del2CAA--N3276B.1.1.70.000003
ORF7a62Q62delCAA---275275AY.1200.010224
ORF7a62Q62delCAA---274274AY.4.20.005943
ORF7a62Q62HcaAcaT268268AY.1030.001664
ORF7a62Q62del2cAAc--256268AY.430.001134
ORF7a62Q62del2CAa--a12268AY.430.000053
ORF7a62Q62XCaaTaa260260AY.430.001152
ORF7a62Q62del1Caa-aa139254B.1.1.70.000124
ORF7a62Q62del1caAca-67254B.1.1.70.00006
ORF7a62Q62del1CAaT-a35254B.1.1.70.000031
ORF7a62Q62del1cAac-a7254B.1.1.70.000006
ORF7a62Q62del1CaATa-3254B.1.1.70.000003
ORF7a62Q62del1CAa-Ga1254B.1.1.70.000001
ORF7a62Q62del1CAa-Na1254B.1.1.70.000001
ORF7a62Q62del1CAA-NN1254B.1.1.70.000001
ORF7a62Q62HcaAcaT252252AY.1200.009369
ORF7a62Q62XCaaTaa246246Q.80.040567
ORF7a62Q62XCaaTaa234234AY.1200.0087
ORF7a62Q62delCAA---233233AY.290.003675
ORF7a62Q62RcAacGa233233AY.4.20.005053
ORF7a62Q62delCAA---225225B.1.3510.006688
ORF7a62Q62XCaaTaa221221AY.1030.001372
ORF7a62Q62HcaAcaT216216B.1.617.20.000813
ORF7a62Q62del2CAa--a122209AY.250.000734
ORF7a62Q62del2cAAc--86209AY.250.000517
ORF7a62Q62del2CAA--N1209AY.250.000006
ORF7a62Q62HcaAcaT204205AY.440.001242
ORF7a62Q62HcaAcaC1205AY.440.000006
ORF7a62Q62delCAA---189189B.1.5260.004442
ORF7a62Q62delCAA---184184B.1.177.210.014071
ORF7a62Q62delCAA---177177AY.980.013982
ORF7a62Q62HcaAcaT153173AY.30.001522
ORF7a62Q62HcaAcaC20173AY.30.000199
ORF7a62Q62delCAA---161161B.1.1770.00212
ORF7a62Q62delCAA---159159AY.50.003283
ORF7a62Q62delCAA---156156B.1.20.001374
ORF7a62Q62delCAA---151151B.10.001383
ORF7a62Q62HcaAcaT147147AY.250.000884
ORF7a62Q62ECaaGaa140140All0.000027
ORF7a62Q62YCaATaT136138All0.000026
ORF7a62Q62YCaATaC2138All0
ORF7a62Q62delCAA---137137AY.1000.006303
ORF7a62Q62delCAA---136136AY.1190.004802
ORF7a62Q62delCAA---134134AY.470.004168
ORF7a62Q62del2cAAc--119132AY.30.001184
ORF7a62Q62del2CAa--a13132AY.30.000129
ORF7a62Q62delCAA---132132AY.540.012586
ORF7a62Q62del1caAca-65129AY.440.000396
ORF7a62Q62del1Caa-aa40129AY.440.000243
ORF7a62Q62del1cAac-a20129AY.440.000122
ORF7a62Q62del1CAA-NN3129AY.440.000018
ORF7a62Q62del1cAAc-N1129AY.440.000006
ORF7a62Q62del1caAca-116126AY.3.10.00989
ORF7a62Q62del1Caa-aa10126AY.3.10.000853
ORF7a62Q62delCAA---118118AY.60.004853
ORF7a62Q62delCAA---117117AY.7.10.013186
ORF7a62Q62LcAacTa104106B.1.1.70.000093
ORF7a62Q62LCAaTTa2106B.1.1.70.000002
ORF7a62Q62KCaaAaa101104All0.000019
ORF7a62Q62KCaAAaG3104All0.000001
ORF7a62Q62del2CAAT--93103AY.1200.003458
ORF7a62Q62del2cAAc--10103AY.1200.000372
ORF7a62Q62del1Caa-aa96103AY.260.002718
ORF7a62Q62del1caAca-7103AY.260.000198
ORF7a62Q62XCaaTaa103103B.1.10.001869
ORF7a62Q62HcaAcaT102102AY.60.004195
ORF7a62Q62delCAA---101101AY.3.10.008611
ORF7a62Q62XCaaTaa100100B.1.20.000881
ORF7a62Q62del2cAAc--6699B.1.617.20.000249
ORF7a62Q62del2CAa--a2799B.1.617.20.000102
ORF7a62Q62del2CAA--N499B.1.617.20.000015
ORF7a62Q62del2CAAT--199B.1.617.20.000004
ORF7a62Q62del2CAA--T199B.1.617.20.000004
ORF7a62Q62delCAA---9191AY.46.40.01497
ORF7a62Q62XCaaTaa9191B.1.5260.002139
ORF7a62Q62delCAA---8585AY.330.005676
ORF7a62Q62XCaaTaa8383Q.10.010485
ORF7a62Q62del1caAca-6582AY.1030.000404
ORF7a62Q62del1Caa-aa1182AY.1030.000068
ORF7a62Q62del1CAaT-a382AY.1030.000019
ORF7a62Q62del1cAac-a382AY.1030.000019
ORF7a62Q62delCAA---8181AY.750.004538
ORF7a62Q62YCaATaT8181B.1.1.70.000073
ORF7a62Q62delCAA---8080AY.46.60.005777
ORF7a62Q62delCAA---8080AY.5.40.022136
ORF7a62Q62HcaAcaT8080B.1.20.000704
ORF7a62Q62HcaAcaT7777P.10.001213
ORF7a62Q62del1caAca-4976AY.250.000295
ORF7a62Q62del1Caa-aa2376AY.250.000138
ORF7a62Q62del1CAaT-a376AY.250.000018
ORF7a62Q62del1cAac-a176AY.250.000006
ORF7a62Q62delCAA---7575AY.1180.004699
ORF7a62Q62delCAA---7474P.10.001166
ORF7a62Q62delCAA---7373B.1.6210.006462
ORF7a62Q62XCaaTaa7070AY.30.000696
ORF7a62Q62LcAacTa7070AY.430.00031
ORF7a62Q62del2cAAc--7070AY.46.60.005055
ORF7a62Q62XCaaTaa6969B.1.3510.002051
ORF7a62Q62del1caAca-4167B.1.617.20.000154
ORF7a62Q62del1Caa-aa1767B.1.617.20.000064
ORF7a62Q62del1cAac-a667B.1.617.20.000023
ORF7a62Q62del1CAaT-a267B.1.617.20.000008
ORF7a62Q62del1CAa-Na167B.1.617.20.000004
ORF7a62Q62HcaAcaT6666AY.290.001041
ORF7a62Q62XCaaTaa6666AY.4.20.001431
ORF7a62Q62XCaaTaa6666B.10.000605
ORF7a62Q62del2cAAc--4362AY.440.000262
ORF7a62Q62del2CAa--a1962AY.440.000116
ORF7a62Q62delCAA---6161AY.1130.008686
ORF7a62Q62delCAA---6060AY.450.007301
ORF7a62Q62delCAA---6060AY.460.006245
ORF7a62Q62HcaAcaT6060AY.50.001239
ORF7a62Q62delCAA---5858AY.200.002254
ORF7a62Q62XCaaTaa5858B.1.1770.000764
ORF7a62Q62delCAA---5757AY.420.002293
ORF7a62Q62XCaaTaa5757B.1.36.20.612903
ORF7a62Q62delCAA---5555AY.39.10.002179
ORF7a62Q62XCaaTaa5555AY.90.003718
ORF7a62Q62del1Caa-aa5555B.1.2180.283505
ORF7a62Q62HcaAcaT5454AY.260.001529
ORF7a62Q62XCaaTaa5353P.10.000835
ORF7a62Q62delCAA---5252AY.230.003627
ORF7a62Q62delCAA---5151B.1.4290.0012
ORF7a62Q62delCAA---5050AY.116.10.015571
ORF7a62Q62XCaaTaa5050AY.340.004848
ORF7a62Q62HcaAcaT4549AY.1020.001193
ORF7a62Q62HcaAcaC449AY.1020.000106
ORF7a62Q62delCAA---4949AY.9.20.0018
ORF7a62Q62LcAacTa4749B.1.617.20.000177
ORF7a62Q62LcAAcTG249B.1.617.20.000008
ORF7a62Q62HcaAcaC4848AY.860.039834
ORF7a62Q62delCAA---4848AY.98.10.002325
ORF7a62Q62delCAA---4848B.1.1.2840.005155
ORF7a62Q62delCAA---4848B.1.177.40.010131
ORF7a62Q62delCAA---4747AY.130.007566
ORF7a62Q62del1caAca-4747AY.50.000971
ORF7a62Q62delCAA---4747B.1.1600.001466
ORF7a62Q62XCaaTaa4747B.1.5250.005319
ORF7a62Q62XCaaTaa4646AY.290.000726
ORF7a62Q62delCAA---4646B.1.10.000834
ORF7a62Q62XCaaTaa4545AY.1020.001193
ORF7a62Q62delCAA---4545AY.910.032871
ORF7a62Q62delCAA---4545B.1.6370.003288
ORF7a62Q62delCAA---4545P.1.140.002151
ORF7a62Q62del1caAca-4044AY.430.000177
ORF7a62Q62del1Caa-aa244AY.430.000009
ORF7a62Q62del1cAac-a244AY.430.000009
ORF7a62Q62HcaAcaT4044B.1.2210.002841
ORF7a62Q62HcaAcaC444B.1.2210.000284
ORF7a62Q62delCAA---4343AY.1070.020037
ORF7a62Q62delCAA---4343AY.1170.003634
ORF7a62Q62del1caAca-3043AY.30.000298
ORF7a62Q62del1Caa-aa1043AY.30.000099
ORF7a62Q62del1CAaT-a243AY.30.00002
ORF7a62Q62del1cAac-a143AY.30.00001
ORF7a62Q62XCaaTaa4343AY.450.005232
ORF7a62Q62HcaAcaT4242AY.270.002718
ORF7a62Q62delCAA---4242AY.70.008232
ORF7a62Q62delCAA---4141AY.90.002771
ORF7a62Q62HcaAcaC4141B.1.177.40.008653
ORF7a62Q62delCAA---4040AY.4.2.10.005959
ORF7a62Q62XCaaTaa3939AY.130.006278
ORF7a62Q62del2cAAc--3939AY.860.032365
ORF7a62Q62delCAA---3939AY.99.20.003594
ORF7a62Q62XCaaTaa3838AY.920.010916
ORF7a62Q62delCAA---3737AY.1100.004169
ORF7a62Q62HcaAcaT3737B.10.000339
ORF7a62Q62RcAacGa3336AY.250.000198
ORF7a62Q62RcAAcGT336AY.250.000018
ORF7a62Q62del1caAca-1936B.1.20.000167
ORF7a62Q62del1CaATa-1636B.1.20.000141
ORF7a62Q62del1Caa-aa136B.1.20.000009
ORF7a62Q62delCAA---3535AY.340.003394
ORF7a62Q62XCaaTaa3535AY.390.000865
ORF7a62Q62HcaAcaT3535AY.98.10.001695
ORF7a62Q62XCaaTaa3434AY.1180.00213
ORF7a62Q62ECaaGaa3434AY.40.000053
ORF7a62Q62delCAA---3434B.1.1.2140.001886
ORF7a62Q62RcAacGa3434B.1.2430.002366
ORF7a62Q62XCaaTaa3434B.1.4290.0008
ORF7a62Q62XCaaTaa3434C.370.003946
ORF7a62Q62del2cAAc--2933AY.1030.00018
ORF7a62Q62del2CAa--a433AY.1030.000025
ORF7a62Q62HcaAcaT3233B.1.3510.000951
ORF7a62Q62HcaAcaC133B.1.3510.00003
ORF7a62Q62HcaAcaT3232AY.1100.003606
ORF7a62Q62QcaAcaG3232B.1.10.000581
ORF7a62Q62delCAA---3131AY.1110.005678
ORF7a62Q62LcAacTa3131AY.40.000048
ORF7a62Q62XCaaTaa3030AY.360.004446
ORF7a62Q62XCaaTaa3030AY.50.000619
ORF7a62Q62delCAA---3030AY.7.20.016779
ORF7a62Q62HcaAcaT3030B.1.177.460.027548
ORF7a62Q62delCAA---2929AY.1210.003924
ORF7a62Q62HcaAcaT2929AY.390.000717
ORF7a62Q62delCAA---2929AY.610.003039
ORF7a62Q62HcaAcaT2929B.1.1600.000904
ORF7a62Q62delCAA---2828AY.46.20.017789
ORF7a62Q62delCAA---2828AY.600.026266
ORF7a62Q62HcaAcaT2828B.1.1770.000369
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ORF7a62Q62delCAA---55B.1.2340.00066
ORF7a62Q62delCAA---55B.1.2580.000333
ORF7a62Q62del2CAa--a35B.1.3510.000089
ORF7a62Q62del2cAAc--25B.1.3510.000059
ORF7a62Q62del2cAAc--55B.1.351.20.001513
ORF7a62Q62delCAA---55B.1.3750.004098
ORF7a62Q62del1Caa-aa35B.1.4290.000071
ORF7a62Q62del1caAca-15B.1.4290.000024
ORF7a62Q62del1cAac-a15B.1.4290.000024
ORF7a62Q62HcaAcaT55B.1.4560.01634
ORF7a62Q62XCaaTaa55B.1.5950.001305
ORF7a62Q62XCaaTaa55B.1.6370.000365
ORF7a62Q62delCAA---55B.1.700.121951
ORF7a62Q62XCaaTaa55B.30.004153
ORF7a62Q62ECaaGaa55P.10.000079
ORF7a62Q62HcaAcaT55P.1.140.000239
ORF7a62Q62HcaAcaT55P.1.150.001162
ORF7a62Q62del1Caa-aa55P.1.20.00578
ORF7a62Q62del2cAAc--55P.1.70.001596
ORF7a62Q62delCAA---44A0.001548
ORF7a62Q62delCAA---44A.2.50.001996
ORF7a62Q62XCaaTaa44AA.20.030769
ORF7a62Q62del1CAaT-a24AY.1000.000092
ORF7a62Q62del1Caa-aa14AY.1000.000046
ORF7a62Q62del1caAca-14AY.1000.000046
ORF7a62Q62delCAA---44AY.1010.001962
ORF7a62Q62YCaATaT44AY.1030.000025
ORF7a62Q62XCaaTaa44AY.1110.000733
ORF7a62Q62XCaaTaa34AY.1140.000693
ORF7a62Q62XCaATaG14AY.1140.000231
ORF7a62Q62HcaAcaT44AY.1160.001147
ORF7a62Q62XCaaTaa44AY.120.001264
ORF7a62Q62LcAacTa44AY.1200.000149
ORF7a62Q62delCAA---44AY.120.20.005141
ORF7a62Q62delCAA---44AY.120.2.10.001993
ORF7a62Q62XCaaTaa44AY.190.004561
ORF7a62Q62LcAacTa44AY.200.000155
ORF7a62Q62del1Caa-aa24AY.200.000078
ORF7a62Q62del1caAca-24AY.200.000078
ORF7a62Q62delCAA---44AY.220.008368
ORF7a62Q62del2cAAc--34AY.230.000209
ORF7a62Q62del2CAa--a14AY.230.00007
ORF7a62Q62SCAATCT24AY.250.000012
ORF7a62Q62SCAATCC14AY.250.000006
ORF7a62Q62SCAATCG14AY.250.000006
ORF7a62Q62RcAacGa44AY.290.000063
ORF7a62Q62XCaaTaa44AY.320.00213
ORF7a62Q62del2CAa--a34AY.330.0002
ORF7a62Q62del2cAAc--14AY.330.000067
ORF7a62Q62del2CAa--a44AY.39.10.000158
ORF7a62Q62YCaATaT44AY.40.000006
ORF7a62Q62PcAacCa34AY.430.000013
ORF7a62Q62PcAAcCT14AY.430.000004
ORF7a62Q62HcaAcaT44AY.5.40.001107
ORF7a62Q62delCAA---44AY.530.00115
ORF7a62Q62XCaaTaa44AY.530.00115
ORF7a62Q62delCAA---44AY.660.004278
ORF7a62Q62delCAA---44AY.690.000747
ORF7a62Q62delCAA---44AY.730.002661
ORF7a62Q62delCAA---44AY.790.004843
ORF7a62Q62XCaaTaa44AY.840.00175
ORF7a62Q62XCaaTaa44AY.850.001709
ORF7a62Q62delCAA---44AY.860.00332
ORF7a62Q62del2cAAc--34AY.9.20.00011
ORF7a62Q62del2CAa--a14AY.9.20.000037
ORF7a62Q62del1caAca-34AY.99.20.000276
ORF7a62Q62del2cAAc--34AY.99.20.000276
ORF7a62Q62del1Caa-aa14AY.99.20.000092
ORF7a62Q62del2CAa--a14AY.99.20.000092
ORF7a62Q62del2cAAc--34B.10.000027
ORF7a62Q62del1caAca-24B.10.000018
ORF7a62Q62del1Caa-aa24B.10.000018
ORF7a62Q62del2CAA--N14B.10.000009
ORF7a62Q62XCaaTaa44B.1.1.1700.004988
ORF7a62Q62delCAA---44B.1.1.3180.001207
ORF7a62Q62HcaAcaT44B.1.1.4340.001394
ORF7a62Q62HcaAcaT44B.1.1.5230.00625
ORF7a62Q62SCAaTCa44B.1.1.70.000004
ORF7a62Q62QcaAcaG44B.1.177.70.000659
ORF7a62Q62ECaaGaa44B.1.20.000035
ORF7a62Q62del2cAAc--44B.1.2340.000528
ORF7a62Q62HcaAcaT44B.1.2430.000278
ORF7a62Q62del2cAAc--44B.1.258.170.000416
ORF7a62Q62HcaAcaT44B.1.3110.001098
ORF7a62Q62HcaAcaT44B.1.351.30.003506
ORF7a62Q62delCAA---44B.1.360.000584
ORF7a62Q62XCaaTaa44B.1.3890.004008
ORF7a62Q62HcaAcaT44B.1.4270.000202
ORF7a62Q62XCaaTaa44B.1.438.10.000429
ORF7a62Q62LcAacTa44B.1.438.10.000429
ORF7a62Q62delCAA---44B.1.466.20.001565
ORF7a62Q62del1cAac-a44B.1.5260.000094
ORF7a62Q62QcaAcaG44B.1.617.20.000015
ORF7a62Q62TCAAACT24B.1.617.20.000008
ORF7a62Q62TCAaACa14B.1.617.20.000004
ORF7a62Q62TCAAACC14B.1.617.20.000004
ORF7a62Q62XCaaTaa44B.1.6200.003784
ORF7a62Q62del2cAAc--44B.1.6210.000354
ORF7a62Q62XCaaTaa34B.1.6280.001057
ORF7a62Q62XCAaTGa14B.1.6280.000352
ORF7a62Q62HcaAcaT44C.360.003643
ORF7a62Q62XCaaTaa44D.20.0003
ORF7a62Q62LcAacTa44P.10.000063
ORF7a62Q62HcaAcaT44P.1.160.001496
ORF7a62Q62delCAA---44Q.30.00058
ORF7a62Q62delCAA---44Q.40.001819
ORF7a62Q62YCaATaT44Q.80.00066
ORF7a62Q62XCaaTaa33A.10.000846
ORF7a62Q62delCAA---33A.23.10.002113
ORF7a62Q62CCAATGC33All0.000001
ORF7a62Q62ICAAATT23All0
ORF7a62Q62ICAAATC13All0
ORF7a62Q62LcAacTa33AY.1000.000138
ORF7a62Q62ECaaGaa33AY.1000.000138
ORF7a62Q62del1caAca-33AY.1010.001471
ORF7a62Q62RcAacGa33AY.1020.00008
ORF7a62Q62del1caAca-33AY.1060.001005
ORF7a62Q62del2cAAc--33AY.1070.001398
ORF7a62Q62del1cAac-a33AY.1080.003308
ORF7a62Q62delCAA---33AY.110.004016
ORF7a62Q62del2CAA--N23AY.116.10.000623
ORF7a62Q62del2cAAc--13AY.116.10.000311
ORF7a62Q62del1caAca-23AY.1190.000071
ORF7a62Q62del1cAac-a13AY.1190.000035
ORF7a62Q62XCaaTaa33AY.1210.000406
ORF7a62Q62del1caAca-33AY.230.000209
ORF7a62Q62delCAA---33AY.240.001293
ORF7a62Q62del2cAAc--23AY.240.000862
ORF7a62Q62del2CAa--a13AY.240.000431
ORF7a62Q62QcaAcaG33AY.250.000018
ORF7a62Q62FCAATTT23AY.250.000012
ORF7a62Q62KCaaAaa23AY.250.000012
ORF7a62Q62KCaAAaG13AY.250.000006
ORF7a62Q62FCAATTC13AY.250.000006
ORF7a62Q62LcAacTa33AY.290.000047
ORF7a62Q62ECaaGaa33AY.290.000047
ORF7a62Q62XCaaTaa33AY.29.10.000662
ORF7a62Q62LcAacTa33AY.30.00003
ORF7a62Q62del1caAca-23AY.340.000194
ORF7a62Q62del1Caa-aa13AY.340.000097
ORF7a62Q62HcaAcaT33AY.360.000445
ORF7a62Q62delCAA---33AY.4.30.002525
ORF7a62Q62XCaaTaa33AY.4.40.001227
ORF7a62Q62del1Caa-aa23AY.4.50.000215
ORF7a62Q62del1cAac-a13AY.4.50.000107
ORF7a62Q62delCAA---33AY.400.002893
ORF7a62Q62delCAA---33AY.410.000882
ORF7a62Q62del1cAac-a33AY.420.000121
ORF7a62Q62LcAacTa33AY.420.000121
ORF7a62Q62KCaaAaa33AY.430.000013
ORF7a62Q62XCaaTaa33AY.46.10.00308
ORF7a62Q62delCAA---33AY.5.30.001012
ORF7a62Q62HcaAcaT33AY.610.000314
ORF7a62Q62XCaaTaa33AY.620.001307
ORF7a62Q62delCAA---33AY.640.001786
ORF7a62Q62HcaAcaT33AY.650.001599
ORF7a62Q62XCaaTaa33AY.670.001393
ORF7a62Q62HcaAcaT33AY.7.20.001678
ORF7a62Q62XCaaTaa33AY.730.001996
ORF7a62Q62delCAA---33AY.80.001818
ORF7a62Q62del1Caa-aa33AY.840.001312
ORF7a62Q62delCAA---33AY.880.002653
ORF7a62Q62delCAA---33B.1.1.1180.030612
ORF7a62Q62delCAA---33B.1.1.1210.007282
ORF7a62Q62XCaaTaa33B.1.1.1920.006928
ORF7a62Q62RcAacGa33B.1.1.2070.003546
ORF7a62Q62delCAA---33B.1.1.250.001706
ORF7a62Q62XCaaTaa33B.1.1.2690.00406
ORF7a62Q62XCaaTaa33B.1.1.280.000934
ORF7a62Q62QcaAcaG33B.1.1.2940.003797
ORF7a62Q62XCaaTaa33B.1.1.3010.003538
ORF7a62Q62del2cAAc--33B.1.1.4860.004732
ORF7a62Q62HcaAcaT33B.1.1.630.001157
ORF7a62Q62DCaAGaC33B.1.1.70.000003
ORF7a62Q62CCAATGC33B.1.1.70.000003
ORF7a62Q62HcaAcaT33B.1.1060.09375
ORF7a62Q62delCAA---33B.1.160.160.002788
ORF7a62Q62delCAA---33B.1.177.100.002634
ORF7a62Q62del2cAAc--33B.1.177.440.001557
ORF7a62Q62delCAA---33B.1.177.570.000843
ORF7a62Q62delCAA---33B.1.177.60.00293
ORF7a62Q62delCAA---33B.1.177.620.003576
ORF7a62Q62delCAA---33B.1.177.810.000568
ORF7a62Q62XCaaTaa33B.1.177.810.000568
ORF7a62Q62delCAA---33B.1.2210.000213
ORF7a62Q62DCaAGaC33B.1.3510.000089
ORF7a62Q62delCAA---33B.1.351.20.000908
ORF7a62Q62HcaAcaT33B.1.36.390.006652
ORF7a62Q62delCAA---33B.1.3690.000856
ORF7a62Q62XCaaTaa33B.1.3750.002459
ORF7a62Q62ECaaGaa33B.1.4270.000151
ORF7a62Q62LcAacTa33B.1.4290.000071
ORF7a62Q62del1caAca-33B.1.466.20.001174
ORF7a62Q62XCaaTaa33B.1.5090.002597
ORF7a62Q62del1caAca-33B.1.5170.001281
ORF7a62Q62XCaaTaa33B.1.5510.003871
ORF7a62Q62delCAA---33B.1.5750.00091
ORF7a62Q62del1caAca-33B.1.5960.000261
ORF7a62Q62delCAA---33B.1.617.10.000387
ORF7a62Q62del1Caa-aa33B.1.6210.000266
ORF7a62Q62delCAA---33B.1.621.10.001517
ORF7a62Q62delCAA---33B.1.6260.017143
ORF7a62Q62HcaAcaT33B.1.6370.000219
ORF7a62Q62HcaAcaT33B.230.008772
ORF7a62Q62del2cAAc--33B.520.030303
ORF7a62Q62XCaaTaa33B.6.60.002667
ORF7a62Q62QcaAcaG33C.360.002732
ORF7a62Q62XCaaTaa33P.1.120.001452
ORF7a62Q62LcAacTa33P.20.00056
ORF7a62Q62HcaAcaT33Q.30.000435
ORF7a62Q62ECaaGaa220.111111
ORF7a62Q62delCAA---220.111111
ORF7a62Q62QcaAcaG22A0.000774
ORF7a62Q62XCaaTaa22A0.000774
ORF7a62Q62XCaaTaa22A.2.5.20.003145
ORF7a62Q62del2cAAc--22A.270.003311
ORF7a62Q62delCAA---22A.280.005291
ORF7a62Q62delCAA---22AD.20.000438
ORF7a62Q62ACAAGCT12All0
ORF7a62Q62VCAAGTT12All0
ORF7a62Q62VCAAGTC12All0
ORF7a62Q62ACAAGCC12All0
ORF7a62Q62del2cAAc--22AY.1050.001286
ORF7a62Q62HcaAcaT22AY.1060.00067
ORF7a62Q62XCaaTaa22AY.1060.00067
ORF7a62Q62HcaAcaT22AY.1080.002205
ORF7a62Q62HcaAcaT22AY.1110.000366
ORF7a62Q62del1CAaT-a12AY.1110.000183
ORF7a62Q62del1Caa-aa12AY.1110.000183
ORF7a62Q62del2cAAc--12AY.1130.000142
ORF7a62Q62del2CAa--a12AY.1130.000142
ORF7a62Q62HcaAcaT22AY.116.10.000623
ORF7a62Q62del1caAca-22AY.1180.000125
ORF7a62Q62KCaaAaa22AY.1190.000071
ORF7a62Q62QcaAcaG22AY.1190.000071
ORF7a62Q62XCaaTaa22AY.120.10.000642
ORF7a62Q62del2CAa--a12AY.120.10.000321
ORF7a62Q62del2cAAc--12AY.120.10.000321
ORF7a62Q62HcaAcaT22AY.120.20.002571
ORF7a62Q62LcAacTa22AY.1210.000271
ORF7a62Q62del2CAa--a22AY.140.000176
ORF7a62Q62XCaaTaa22AY.160.000759
ORF7a62Q62XCaaTaa22AY.16.10.00094
ORF7a62Q62del2CAA--N12AY.190.00114
ORF7a62Q62del2CAA--T12AY.190.00114
ORF7a62Q62delCAA---22AY.20.000712
ORF7a62Q62delCAA---22AY.23.10.000835
ORF7a62Q62HcaAcaT22AY.240.000862
ORF7a62Q62TCAAACG12AY.250.000006
ORF7a62Q62ACAAGCT12AY.250.000006
ORF7a62Q62VCAAGTT12AY.250.000006
ORF7a62Q62VCAAGTC12AY.250.000006
ORF7a62Q62TCAAACT12AY.250.000006
ORF7a62Q62DCaAGaC12AY.250.000006
ORF7a62Q62DCaAGaT12AY.250.000006
ORF7a62Q62ACAAGCC12AY.250.000006
ORF7a62Q62HcaAcaT22AY.29.10.000441
ORF7a62Q62XCaaTaa22AY.300.000791
ORF7a62Q62HcaAcaT22AY.340.000194
ORF7a62Q62ECaaGaa22AY.340.000194
ORF7a62Q62XCaaTaa22AY.34.10.00102
ORF7a62Q62del1caAca-22AY.350.000466
ORF7a62Q62HcaAcaT22AY.370.000632
ORF7a62Q62HcaAcaT22AY.380.000999
ORF7a62Q62ECaaGaa22AY.390.000049
ORF7a62Q62LcAacTa22AY.390.000049
ORF7a62Q62HcaAcaT22AY.39.1.10.001449
ORF7a62Q62delCAA---22AY.39.20.003082
ORF7a62Q62KCaaAaa22AY.40.000003
ORF7a62Q62LcAacTa22AY.4.20.000043
ORF7a62Q62HcaAcaT22AY.4.2.10.000298
ORF7a62Q62QcaAcaG22AY.4.50.000215
ORF7a62Q62ECaaGaa22AY.4.50.000215
ORF7a62Q62QcaAcaG22AY.440.000012
ORF7a62Q62del1Caa-aa22AY.450.000243
ORF7a62Q62XCaaTaa22AY.46.20.001271
ORF7a62Q62delCAA---22AY.46.30.001867
ORF7a62Q62del1caAca-22AY.46.60.000144
ORF7a62Q62delCAA---22AY.490.00639
ORF7a62Q62QcaAcaG22AY.50.000041
ORF7a62Q62LcAacTa22AY.5.30.000675
ORF7a62Q62del1caAca-12AY.5.30.000337
ORF7a62Q62del1Caa-aa12AY.5.30.000337
ORF7a62Q62delCAA---22AY.510.001818
ORF7a62Q62del1caAca-12AY.540.000095
ORF7a62Q62del2CAa--a12AY.540.000095
ORF7a62Q62del2CAA--N12AY.540.000095
ORF7a62Q62del1Caa-aa12AY.540.000095
ORF7a62Q62HcaAcaT22AY.570.001312
ORF7a62Q62del2cAAc--12AY.60.000041
ORF7a62Q62del2CAa--a12AY.60.000041
ORF7a62Q62XCaaTaa22AY.640.00119
ORF7a62Q62del2cAAc--22AY.670.000929
ORF7a62Q62XCaaTaa22AY.7.10.000225
ORF7a62Q62HcaAcaT22AY.710.00095
ORF7a62Q62delCAA---22AY.720.002721
ORF7a62Q62XCaaTaa22AY.740.000231
ORF7a62Q62ECaaGaa22AY.750.000112
ORF7a62Q62del1caAca-12AY.750.000056
ORF7a62Q62del1Caa-aa12AY.750.000056
ORF7a62Q62HcaAcaT22AY.770.002255
ORF7a62Q62XCaATaG22AY.820.002714
ORF7a62Q62del1caAca-22AY.9.10.000167
ORF7a62Q62HcaAcaT22AY.930.000546
ORF7a62Q62del1Caa-aa22AY.980.000158
ORF7a62Q62QcaAcaG22AY.98.10.000097
ORF7a62Q62delCAA---22AZ.20.001642
ORF7a62Q62QcaAcaG22B.10.000018
ORF7a62Q62LcAacTa22B.10.000018
ORF7a62Q62KCaaAaa22B.10.000018
ORF7a62Q62del2cAAc--22B.1.10.000036
ORF7a62Q62delCAA---22B.1.1.100.00223
ORF7a62Q62RcAacGa22B.1.1.1010.02
ORF7a62Q62delCAA---22B.1.1.1630.015267
ORF7a62Q62XCaaTaa22B.1.1.1680.052632
ORF7a62Q62delCAA---22B.1.1.1700.002494
ORF7a62Q62XCaaTaa22B.1.1.2080.02439
ORF7a62Q62delCAA---22B.1.1.2190.01
ORF7a62Q62delCAA---22B.1.1.2200.003717
ORF7a62Q62RcAacGa22B.1.1.2220.000408
ORF7a62Q62XCaaTaa22B.1.1.250.001137
ORF7a62Q62XCaaTaa22B.1.1.2630.003115
ORF7a62Q62HcaAcaT22B.1.1.2630.003115
ORF7a62Q62del2cAAc--22B.1.1.2840.000215
ORF7a62Q62delCAA---22B.1.1.3030.005525
ORF7a62Q62delCAA---22B.1.1.3110.000716
ORF7a62Q62delCAA---22B.1.1.3170.000823
ORF7a62Q62del1caAca-22B.1.1.3180.000604
ORF7a62Q62del2CAa--a12B.1.1.330.000421
ORF7a62Q62del2cAAc--12B.1.1.330.000421
ORF7a62Q62XCaaTaa22B.1.1.370.000386
ORF7a62Q62HcaAcaT22B.1.1.370.000386
ORF7a62Q62XCaaTaa22B.1.1.3700.025316
ORF7a62Q62delCAA---22B.1.1.3720.001377
ORF7a62Q62del1caAca-22B.1.1.3720.001377
ORF7a62Q62XCaaTaa22B.1.1.4010.133333
ORF7a62Q62delCAA---22B.1.1.4320.002532
ORF7a62Q62HcaAcaT22B.1.1.5070.017391
ORF7a62Q62del2cAAc--22B.1.1.5190.000079
ORF7a62Q62delCAA---22B.1.1.5210.010695
ORF7a62Q62XCaaTaa22B.1.1.5210.010695
ORF7a62Q62delCAA---22B.1.1.700.000682
ORF7a62Q62XCaaTaa22B.1.1.700.000682
ORF7a62Q62delCAA---22B.1.1390.001466
ORF7a62Q62delCAA---22B.1.160.140.004237
ORF7a62Q62delCAA---22B.1.160.300.005952
ORF7a62Q62KCaaAaa22B.1.1770.000026
ORF7a62Q62LCAaTTa12B.1.1770.000013
ORF7a62Q62LcAacTa12B.1.1770.000013
ORF7a62Q62delCAA---22B.1.177.160.001329
ORF7a62Q62XCaaTaa22B.1.177.160.001329
ORF7a62Q62RcAacGa22B.1.177.210.000153
ORF7a62Q62del1caAca-22B.1.177.420.001789
ORF7a62Q62RcAacGa22B.1.177.430.002954
ORF7a62Q62delCAA---22B.1.177.50.002484
ORF7a62Q62delCAA---22B.1.177.550.004662
ORF7a62Q62XCaaTaa22B.1.177.560.001335
ORF7a62Q62XCaaTaa22B.1.177.570.000562
ORF7a62Q62QcaAcaG22B.1.177.670.015267
ORF7a62Q62XCaaTaa22B.1.177.730.001133
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ORF7a62Q62HcaAcaT22B.1.4210.014925
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ORF7a62Q62HcaAcaT12B.1.5960.000087
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ORF7a62Q62XCaaTaa22B.1.621.10.001012
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ORF7a62Q62PcAacCa11A.2.40.003367
ORF7a62Q62delCAA---11A.2.5.30.010309
ORF7a62Q62delCAA---11A.230.010526
ORF7a62Q62LcAAcTT11A.270.001656
ORF7a62Q62RcAacGa11A.270.001656
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