CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 61 & Codon = --t

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF7a	61	T61del2		del	ACt	--t	95	39	0.410526	27574-27576

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF7a	61	T61del2	ACt	--t	39	95	All	0.000007
ORF7a	61	T61del2	ACt	--t	15	32	AY.25	0.00009
ORF7a	61	T61del2	ACt	--t	1	12	AY.103	0.000006
ORF7a	61	T61del2	ACt	--t	12	12	AY.42	0.000483
ORF7a	61	T61del2	ACt	--t	1	4	AY.4	0.000002
ORF7a	61	T61del2	ACt	--t	2	4	B.1.1.7	0.000002
ORF7a	61	T61del2	ACt	--t	1	3	AY.39	0.000025
ORF7a	61	T61del2	ACt	--t	1	2	AY.43	0.000004
ORF7a	61	T61del2	ACt	--t	1	1	AY.105	0.000643
ORF7a	61	T61del2	ACt	--t	1	1	AY.3	0.00001
ORF7a	61	T61del2	ACt	--t	1	1	B.1	0.000009
ORF7a	61	T61del2	ACt	--t	1	1	B.1.429	0.000024
ORF7a	61	T61del2	ACt	--t	1	1	B.1.617.2	0.000004
ORF7a	61	T61del2	ACt	--t	1	1	C.37	0.000116

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.