CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 61

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a61T61deldelACT---3573535735127574-27576
ORF7a61T61InonsynaCtaTt519251810.99788127574-27576
ORF7a61T61InonsynaCTaTC519270.0013482327574-27576
ORF7a61T61InonsynaCTaTA519240.00077041627574-27576
ORF7a61T61TsynacTacC326431430.96292927574-27576
ORF7a61T61TsynacTacG3264630.019301527574-27576
ORF7a61T61TsynacTacA3264580.017769627574-27576
ORF7a61T61NnonsynaCtaAt3543510.99152527574-27576
ORF7a61T61NnonsynaCTaAC35430.0084745827574-27576
ORF7a61T61del1delacTac-3233000.92879327574-27576
ORF7a61T61del1delAct-ct32390.027863827574-27576
ORF7a61T61del1delACT-NN32360.018575927574-27576
ORF7a61T61del1delACt-At32360.018575927574-27576
ORF7a61T61del1delAcT-cN32310.0030959827574-27576
ORF7a61T61del1delAcT-cC32310.0030959827574-27576
ORF7a61T61SnonsynActTct110580.52727327574-27576
ORF7a61T61SnonsynaCtaGt110390.35454527574-27576
ORF7a61T61SnonsynAcTTcA11050.045454527574-27576
ORF7a61T61SnonsynAcTTcC11040.036363627574-27576
ORF7a61T61SnonsynaCTaGC11040.036363627574-27576
ORF7a61T61del2delaCTa--95550.57894727574-27576
ORF7a61T61del2delACt--t95390.41052627574-27576
ORF7a61T61del2delACT--G9510.010526327574-27576
ORF7a61T61AnonsynActGct48470.97916727574-27576
ORF7a61T61AnonsynAcTGcC4810.020833327574-27576
ORF7a61T61LnonsynACTCTC1340.30769227574-27576
ORF7a61T61LnonsynACTTTA1340.30769227574-27576
ORF7a61T61LnonsynACTCTA1330.23076927574-27576
ORF7a61T61LnonsynACtCTt1310.076923127574-27576
ORF7a61T61LnonsynACTTTG1310.076923127574-27576
ORF7a61T61KnonsynaCTaAA1290.7527574-27576
ORF7a61T61KnonsynaCTaAG1230.2527574-27576
ORF7a61T61PnonsynActCct970.77777827574-27576
ORF7a61T61FnonsynACtTTt970.77777827574-27576
ORF7a61T61FnonsynACTTTC920.22222227574-27576
ORF7a61T61PnonsynAcTCcA910.11111127574-27576
ORF7a61T61PnonsynAcTCcG910.11111127574-27576
ORF7a61T61CnonsynACtTGt640.66666727574-27576
ORF7a61T61CnonsynACTTGC620.33333327574-27576
ORF7a61T61VnonsynACTGTG520.427574-27576
ORF7a61T61VnonsynACtGTt520.427574-27576
ORF7a61T61VnonsynACTGTA510.227574-27576
ORF7a61T61DnonsynACtGAt44127574-27576
ORF7a61T61YnonsynACtTAt430.7527574-27576
ORF7a61T61XnonsynACTTGA420.527574-27576
ORF7a61T61XnonsynACTTAA410.2527574-27576
ORF7a61T61XnonsynACTTAG410.2527574-27576
ORF7a61T61YnonsynACTTAC410.2527574-27576
ORF7a61T61RnonsynaCTaGA33127574-27576
ORF7a61T61HnonsynACTCAC320.66666727574-27576
ORF7a61T61HnonsynACtCAt310.33333327574-27576
ORF7a61T61QnonsynACTCAA210.527574-27576
ORF7a61T61QnonsynACTCAG210.527574-27576
ORF7a61T61MnonsynaCTaTG11127574-27576
ORF7a61T61GnonsynACtGGt11127574-27576
ORF7a61T61EnonsynACTGAA11127574-27576

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a61T61delACT---3573535735All0.006835
ORF7a61T61delACT---1299612996AY.40.020227
ORF7a61T61IaCtaTt51815192All0.000991
ORF7a61T61IaCTaTC75192All0.000001
ORF7a61T61IaCTaTA45192All0.000001
ORF7a61T61delACT---46594659B.1.1.70.004171
ORF7a61T61delACT---35723572B.1.617.20.01345
ORF7a61T61TacTacC31433264All0.000601
ORF7a61T61TacTacG633264All0.000012
ORF7a61T61TacTacA583264All0.000011
ORF7a61T61IaCtaTt25832583B.1.1.70.002312
ORF7a61T61delACT---16541654AY.120.10.530979
ORF7a61T61delACT---16141614AY.250.009708
ORF7a61T61TacTacC14801480B.1.214.20.88729
ORF7a61T61delACT---10581058AY.430.004687
ORF7a61T61delACT---921921AY.1030.005719
ORF7a61T61delACT---722722AY.440.004395
ORF7a61T61IaCtaTt618618AY.30.006147
ORF7a61T61delACT---556556AY.30.00553
ORF7a61T61TacTacC482492B.1.617.20.001815
ORF7a61T61TacTacA8492B.1.617.20.00003
ORF7a61T61TacTacG2492B.1.617.20.000008
ORF7a61T61delACT---462462AY.260.013079
ORF7a61T61delACT---416416AY.390.01028
ORF7a61T61IaCtaTt367367AY.40.000571
ORF7a61T61NaCtaAt351354All0.000067
ORF7a61T61NaCTaAC3354All0.000001
ORF7a61T61delACT---350350AY.1020.00928
ORF7a61T61del1acTac-300323All0.000057
ORF7a61T61del1Act-ct9323All0.000002
ORF7a61T61del1ACt-At6323All0.000001
ORF7a61T61del1ACT-NN6323All0.000001
ORF7a61T61del1AcT-cC1323All0
ORF7a61T61del1AcT-cN1323All0
ORF7a61T61delACT---295295AY.4.20.006398
ORF7a61T61TacTacC286286AY.1170.024172
ORF7a61T61delACT---280280AY.46.50.055556
ORF7a61T61TacTacC273273B.1.177.860.050083
ORF7a61T61delACT---261261AY.1200.009704
ORF7a61T61delACT---234234AY.290.003691
ORF7a61T61delACT---223223B.1.3510.006629
ORF7a61T61IaCtaTt207207B.1.617.20.000779
ORF7a61T61delACT---190190B.1.5260.004466
ORF7a61T61delACT---184184B.1.177.210.014071
ORF7a61T61delACT---177177AY.980.013982
ORF7a61T61delACT---165165AY.50.003407
ORF7a61T61delACT---153153B.1.1770.002015
ORF7a61T61delACT---149149B.1.20.001312
ORF7a61T61delACT---143143B.10.00131
ORF7a61T61delACT---140140AY.1190.004943
ORF7a61T61NaCtaAt135137AY.250.000812
ORF7a61T61NaCTaAC2137AY.250.000012
ORF7a61T61delACT---134134AY.470.004168
ORF7a61T61delACT---134134AY.540.012777
ORF7a61T61delACT---133133AY.1000.006119
ORF7a61T61TacTacC123123B.1.214.30.878571
ORF7a61T61delACT---118118AY.60.004853
ORF7a61T61delACT---118118AY.7.10.013299
ORF7a61T61SActTct58110All0.000011
ORF7a61T61SaCtaGt39110All0.000007
ORF7a61T61SAcTTcA5110All0.000001
ORF7a61T61SaCTaGC4110All0.000001
ORF7a61T61SAcTTcC4110All0.000001
ORF7a61T61TacTacC108108B.1.214.40.981818
ORF7a61T61TacTacC100107AY.40.000156
ORF7a61T61TacTacA6107AY.40.000009
ORF7a61T61TacTacG1107AY.40.000002
ORF7a61T61IaCtaTt103103AY.440.000627
ORF7a61T61IaCtaTt98102AY.250.000589
ORF7a61T61IaCTaTA2102AY.250.000012
ORF7a61T61IaCTaTC2102AY.250.000012
ORF7a61T61TacTacC6297B.1.1.70.000056
ORF7a61T61TacTacG3097B.1.1.70.000027
ORF7a61T61TacTacA597B.1.1.70.000004
ORF7a61T61del2aCTa--5595All0.000011
ORF7a61T61del2ACt--t3995All0.000007
ORF7a61T61del2ACT--G195All0
ORF7a61T61delACT---9292AY.46.40.015134
ORF7a61T61IaCtaTt8989AY.100.047165
ORF7a61T61delACT---8888AY.330.005876
ORF7a61T61delACT---8787AY.750.004874
ORF7a61T61IaCtaTt8080AY.46.50.015873
ORF7a61T61delACT---8080AY.5.40.022136
ORF7a61T61IaCtaTt7979P.10.001245
ORF7a61T61delACT---7777AY.46.60.00556
ORF7a61T61delACT---7575P.10.001182
ORF7a61T61delACT---7272AY.3.10.006139
ORF7a61T61delACT---7272B.1.6210.006373
ORF7a61T61delACT---6464AY.200.002487
ORF7a61T61del1acTac-5864AY.250.000349
ORF7a61T61del1Act-ct364AY.250.000018
ORF7a61T61del1ACT-NN364AY.250.000018
ORF7a61T61delACT---6161AY.450.007423
ORF7a61T61delACT---6060AY.1130.008543
ORF7a61T61delACT---5959AY.420.002374
ORF7a61T61delACT---5858AY.39.10.002298
ORF7a61T61delACT---5858AY.460.006037
ORF7a61T61IaCtaTt5757AY.430.000253
ORF7a61T61del1acTac-5555B.1.1.70.000049
ORF7a61T61delACT---5555B.1.2180.283505
ORF7a61T61delACT---5454AY.230.003766
ORF7a61T61delACT---5353AY.9.20.001947
ORF7a61T61IaCtaTt5252AY.1180.003258
ORF7a61T61delACT---5252B.1.177.40.010975
ORF7a61T61delACT---5151AY.1180.003195
ORF7a61T61delACT---5050AY.116.10.015571
ORF7a61T61delACT---4949AY.98.10.002373
ORF7a61T61IaCtaTt4949B.1.20.000431
ORF7a61T61AActGct4748All0.000009
ORF7a61T61AAcTGcC148All0
ORF7a61T61delACT---4747AY.130.007566
ORF7a61T61delACT---4747B.1.1.2840.005048
ORF7a61T61delACT---4747B.1.4290.001106
ORF7a61T61delACT---4646AY.90.003109
ORF7a61T61TacTacC2846B.10.000256
ORF7a61T61TacTacG1646B.10.000147
ORF7a61T61TacTacA246B.10.000018
ORF7a61T61delACT---4545AY.910.032871
ORF7a61T61IaCtaTt4545B.1.1770.000593
ORF7a61T61delACT---4444AY.1070.020503
ORF7a61T61delACT---4444B.1.10.000798
ORF7a61T61IaCtaTt4444B.1.4290.001035
ORF7a61T61delACT---4343AY.1170.003634
ORF7a61T61delACT---4343B.1.1600.001341
ORF7a61T61delACT---4343P.1.140.002055
ORF7a61T61delACT---4242AY.70.008232
ORF7a61T61delACT---4141AY.99.20.003778
ORF7a61T61delACT---4040AY.1100.004508
ORF7a61T61delACT---4040AY.4.2.10.005959
ORF7a61T61NaCtaAt4040AY.430.000177
ORF7a61T61IaCtaTt4040B.1.4270.00202
ORF7a61T61delACT---3838AY.340.003685
ORF7a61T61IaCtaTt3737AY.1030.00023
ORF7a61T61NaCtaAt3333B.1.1.70.00003
ORF7a61T61del2aCTa--1732AY.250.000102
ORF7a61T61del2ACt--t1532AY.250.00009
ORF7a61T61delACT---3232B.1.1.2140.001775
ORF7a61T61IaCtaTt3030B.1.1.1180.306122
ORF7a61T61delACT---2929AY.1210.003924
ORF7a61T61delACT---2929AY.610.003039
ORF7a61T61delACT---2929AY.7.20.016219
ORF7a61T61delACT---2828AY.1110.005128
ORF7a61T61delACT---2828AY.46.20.017789
ORF7a61T61delACT---2828AY.600.026266
ORF7a61T61IaCtaTt2728B.10.000247
ORF7a61T61IaCTaTA128B.10.000009
ORF7a61T61delACT---2727AY.520.021987
ORF7a61T61delACT---2727AY.9.10.002261
ORF7a61T61delACT---2727B.1.6370.001973
ORF7a61T61delACT---2626AY.190.029647
ORF7a61T61del1acTac-2226AY.40.000034
ORF7a61T61del1ACt-At326AY.40.000005
ORF7a61T61del1AcT-cN126AY.40.000002
ORF7a61T61SActTct2326B.1.1.70.000021
ORF7a61T61SaCtaGt326B.1.1.70.000003
ORF7a61T61del1acTac-2325AY.430.000102
ORF7a61T61del1ACt-At125AY.430.000004
ORF7a61T61del1AcT-cC125AY.430.000004
ORF7a61T61delACT---2525B.1.5960.002178
ORF7a61T61del1acTac-2424AY.1180.001504
ORF7a61T61delACT---2424AY.360.003557
ORF7a61T61NaCtaAt2424AY.440.000146
ORF7a61T61TacTacA1824AY.440.00011
ORF7a61T61TacTacC624AY.440.000037
ORF7a61T61IaCtaTt2323AY.1000.001058
ORF7a61T61IaCtaTt2323B.1.10.000417
ORF7a61T61delACT---2222AY.1060.007368
ORF7a61T61IaCtaTt2122B.1.3510.000624
ORF7a61T61IaCTaTA122B.1.3510.00003
ORF7a61T61delACT---2222C.370.002553
ORF7a61T61del1acTac-2121AY.1200.000781
ORF7a61T61delACT---2121AY.300.00831
ORF7a61T61delACT---2121AY.370.006637
ORF7a61T61del1acTac-2121B.1.617.20.000079
ORF7a61T61IaCtaTt2020AY.200.000777
ORF7a61T61SActTct1220AY.250.000072
ORF7a61T61SaCtaGt420AY.250.000024
ORF7a61T61SaCTaGC220AY.250.000012
ORF7a61T61SAcTTcA120AY.250.000006
ORF7a61T61SAcTTcC120AY.250.000006
ORF7a61T61delACT---2020AY.740.002313
ORF7a61T61delACT---2020B.1.1.2220.00408
ORF7a61T61delACT---2020B.1.214.20.01199
ORF7a61T61delACT---2020B.1.4270.00101
ORF7a61T61delACT---2020R.10.0018
ORF7a61T61delACT---1919AY.1160.005449
ORF7a61T61delACT---1919B.1.1.5190.000755
ORF7a61T61delACT---1919Q.80.003133
ORF7a61T61delACT---1818AY.140.001584
ORF7a61T61NaCtaAt1818AY.40.000028
ORF7a61T61delACT---1717AY.4.50.001827
ORF7a61T61IaCtaTt1717AY.480.007907
ORF7a61T61delACT---1616AY.10.006332
ORF7a61T61delACT---1616AY.620.006972
ORF7a61T61delACT---1616B.1.2430.001113
ORF7a61T61IaCtaTt1515B.1.1.5190.000596
ORF7a61T61TacTacC1214AY.1030.000075
ORF7a61T61TacTacG114AY.1030.000006
ORF7a61T61TacTacA114AY.1030.000006
ORF7a61T61delACT---1414AY.1140.003235
ORF7a61T61IaCtaTt1414AY.470.000435
ORF7a61T61delACT---1414AY.840.006124
ORF7a61T61delACT---1414B.1.1.2580.045603
ORF7a61T61TacTacC1414B.1.2100.029851
ORF7a61T61delACT---1414D.20.001051
ORF7a61T61LACTTTA413All0.000001
ORF7a61T61LACTCTC413All0.000001
ORF7a61T61LACTCTA313All0.000001
ORF7a61T61LACTTTG113All0
ORF7a61T61LACtCTt113All0
ORF7a61T61IaCtaTt1313AY.1020.000345
ORF7a61T61del1acTac-1213AY.1030.000075
ORF7a61T61del1Act-ct113AY.1030.000006
ORF7a61T61IaCtaTt1313AY.260.000368
ORF7a61T61delACT---1313AY.680.003559
ORF7a61T61delACT---1313B.1.5250.001471
ORF7a61T61NaCtaAt1313P.10.000205
ORF7a61T61KaCTaAA912All0.000002
ORF7a61T61KaCTaAG312All0.000001
ORF7a61T61del2aCTa--1112AY.1030.000068
ORF7a61T61del2ACt--t112AY.1030.000006
ORF7a61T61IaCtaTt1212AY.1190.000424
ORF7a61T61delACT---1212AY.120.003793
ORF7a61T61TacTacC1112AY.250.000066
ORF7a61T61TacTacA112AY.250.000006
ORF7a61T61del2ACt--t1212AY.420.000483
ORF7a61T61delACT---1212AY.900.008214
ORF7a61T61delACT---1212B.1.3240.019262
ORF7a61T61IaCtaTt1212B.1.5260.000282
ORF7a61T61delACT---1111AY.350.002564
ORF7a61T61NaCtaAt1111AY.39.10.000436
ORF7a61T61TacTacA611AY.430.000027
ORF7a61T61TacTacC511AY.430.000022
ORF7a61T61IaCtaTt1111AY.620.004793
ORF7a61T61delACT---1111AY.870.009159
ORF7a61T61delACT---1111AY.990.011542
ORF7a61T61IaCtaTt1111B.1.1.3980.035484
ORF7a61T61delACT---1111B.1.177.600.002403
ORF7a61T61IaCtaTt1010AY.4.20.000217
ORF7a61T61IaCtaTt1010B.1.177.120.001517
ORF7a61T61delACT---1010B.1.177.560.006676
ORF7a61T61delACT---1010B.1.3910.011274
ORF7a61T61delACT---1010B.1.6280.003524
ORF7a61T61IaCtaTt1010C.370.001161
ORF7a61T61PActCct79All0.000001
ORF7a61T61FACtTTt79All0.000001
ORF7a61T61FACTTTC29All0
ORF7a61T61PAcTCcA19All0
ORF7a61T61PAcTCcG19All0
ORF7a61T61delACT---99AY.1090.006657
ORF7a61T61TacTacC99AY.1200.000335
ORF7a61T61IaCtaTt99AY.340.000873
ORF7a61T61del1acTac-99AY.440.000055
ORF7a61T61IaCtaTt99AY.50.000186
ORF7a61T61TacTacC99B.1.2140.032967
ORF7a61T61TacTacC99B.1.214.10.18
ORF7a61T61delACT---99B.1.258.90.045
ORF7a61T61SaCtaGt49B.1.617.20.000015
ORF7a61T61SActTct39B.1.617.20.000011
ORF7a61T61SAcTTcC19B.1.617.20.000004
ORF7a61T61SaCTaGC19B.1.617.20.000004
ORF7a61T61delACT---99L.10.017143
ORF7a61T61delACT---88A.210.022161
ORF7a61T61delACT---88AY.100.00424
ORF7a61T61delACT---88AY.160.003037
ORF7a61T61delACT---88AY.270.000518
ORF7a61T61TacTacC88AY.330.000534
ORF7a61T61delACT---88AY.590.004237
ORF7a61T61delACT---88AY.710.0038
ORF7a61T61delACT---88AY.850.003417
ORF7a61T61delACT---88B.1.1.2310.024768
ORF7a61T61del2aCTa--88B.1.177.150.005047
ORF7a61T61TacTacC88B.1.20.00007
ORF7a61T61NaCtaAt88B.1.617.20.00003
ORF7a61T61delACT---88Q.10.001011
ORF7a61T61delACT---88Q.20.004908
ORF7a61T61IaCtaTt77AY.290.00011
ORF7a61T61delACT---77AY.320.003727
ORF7a61T61TacTacC77AY.360.001037
ORF7a61T61delACT---77AY.4.40.002864
ORF7a61T61SaCtaGt67AY.430.000027
ORF7a61T61SAcTTcC17AY.430.000004
ORF7a61T61delACT---77AY.650.003731
ORF7a61T61delACT---77AY.75.10.001262
ORF7a61T61delACT---77AY.920.002011
ORF7a61T61delACT---77B.1.1.30.06087
ORF7a61T61delACT---77B.1.1.330.002946
ORF7a61T61IaCtaTt77B.1.177.810.001325
ORF7a61T61TacTacC77B.1.5240.009845
ORF7a61T61TacTacG67B.1.6210.000531
ORF7a61T61TacTacC17B.1.6210.000089
ORF7a61T61IaCtaTt77B.1.6370.000512
ORF7a61T61IaCtaTt77P.1.140.000335
ORF7a61T61delACT---77P.1.150.001626
ORF7a61T61delACT---77P.1.20.008092
ORF7a61T61IaCtaTt77P.1.40.006836
ORF7a61T61delACT---77P.20.001306
ORF7a61T61IaCtaTt77Q.10.000884
ORF7a61T61CACtTGt46All0.000001
ORF7a61T61CACTTGC26All0
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ORF7a61T61SActTct11AY.980.000079
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ORF7a61T61delACT---11B.1.1.1940.00495
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ORF7a61T61IaCtaTt11B.1.1.2650.003155
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ORF7a61T61AActGct11B.1.1.2820.011628
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ORF7a61T61TacTacC11B.1.1.4850.016667
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ORF7a61T61delACT---11B.30.000831
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ORF7a61T61delACT---11Z.10.00289