CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 60 | S60del | del | AGC | --- | 35155 | 35155 | 1 | 27571-27573 | |
ORF7a | 60 | S60S | syn | agC | agT | 1758 | 1755 | 0.998294 | 27571-27573 | |
ORF7a | 60 | S60S | syn | AGc | TCc | 1758 | 2 | 0.00113766 | 27571-27573 | |
ORF7a | 60 | S60S | syn | AGC | TCA | 1758 | 1 | 0.000568828 | 27571-27573 | |
ORF7a | 60 | S60N | nonsyn | aGc | aAc | 777 | 754 | 0.970399 | 27571-27573 | |
ORF7a | 60 | S60N | nonsyn | aGC | aAT | 777 | 23 | 0.029601 | 27571-27573 | |
ORF7a | 60 | S60del2 | del | aGC | a-- | 444 | 406 | 0.914414 | 27571-27573 | |
ORF7a | 60 | S60del2 | del | AGc | --c | 444 | 35 | 0.0788288 | 27571-27573 | |
ORF7a | 60 | S60del2 | del | AGC | --N | 444 | 2 | 0.0045045 | 27571-27573 | |
ORF7a | 60 | S60del2 | del | AGC | G-- | 444 | 1 | 0.00225225 | 27571-27573 | |
ORF7a | 60 | S60del1 | del | Agc | -gc | 415 | 252 | 0.607229 | 27571-27573 | |
ORF7a | 60 | S60del1 | del | agC | ag- | 415 | 150 | 0.361446 | 27571-27573 | |
ORF7a | 60 | S60del1 | del | AGC | -NN | 415 | 6 | 0.0144578 | 27571-27573 | |
ORF7a | 60 | S60del1 | del | aGc | a-c | 415 | 3 | 0.00722892 | 27571-27573 | |
ORF7a | 60 | S60del1 | del | AgC | Ng- | 415 | 1 | 0.00240964 | 27571-27573 | |
ORF7a | 60 | S60del1 | del | aGC | a-N | 415 | 1 | 0.00240964 | 27571-27573 | |
ORF7a | 60 | S60del1 | del | AGc | -Ac | 415 | 1 | 0.00240964 | 27571-27573 | |
ORF7a | 60 | S60del1 | del | aGC | aA- | 415 | 1 | 0.00240964 | 27571-27573 | |
ORF7a | 60 | S60I | nonsyn | aGc | aTc | 272 | 243 | 0.893382 | 27571-27573 | |
ORF7a | 60 | S60I | nonsyn | aGC | aTT | 272 | 23 | 0.0845588 | 27571-27573 | |
ORF7a | 60 | S60I | nonsyn | aGC | aTA | 272 | 6 | 0.0220588 | 27571-27573 | |
ORF7a | 60 | S60G | nonsyn | Agc | Ggc | 72 | 69 | 0.958333 | 27571-27573 | |
ORF7a | 60 | S60G | nonsyn | AgC | GgA | 72 | 3 | 0.0416667 | 27571-27573 | |
ORF7a | 60 | S60R | nonsyn | agC | agA | 63 | 50 | 0.793651 | 27571-27573 | |
ORF7a | 60 | S60R | nonsyn | Agc | Cgc | 63 | 6 | 0.0952381 | 27571-27573 | |
ORF7a | 60 | S60R | nonsyn | agC | agG | 63 | 3 | 0.047619 | 27571-27573 | |
ORF7a | 60 | S60R | nonsyn | AgC | CgT | 63 | 2 | 0.031746 | 27571-27573 | |
ORF7a | 60 | S60R | nonsyn | AgC | CgG | 63 | 1 | 0.015873 | 27571-27573 | |
ORF7a | 60 | S60R | nonsyn | AgC | CgA | 63 | 1 | 0.015873 | 27571-27573 | |
ORF7a | 60 | S60C | nonsyn | Agc | Tgc | 48 | 47 | 0.979167 | 27571-27573 | |
ORF7a | 60 | S60C | nonsyn | AgC | TgT | 48 | 1 | 0.0208333 | 27571-27573 | |
ORF7a | 60 | S60T | nonsyn | aGc | aCc | 37 | 29 | 0.783784 | 27571-27573 | |
ORF7a | 60 | S60T | nonsyn | aGC | aCA | 37 | 5 | 0.135135 | 27571-27573 | |
ORF7a | 60 | S60T | nonsyn | aGC | aCT | 37 | 2 | 0.0540541 | 27571-27573 | |
ORF7a | 60 | S60T | nonsyn | aGC | aCG | 37 | 1 | 0.027027 | 27571-27573 | |
ORF7a | 60 | S60K | nonsyn | aGC | aAA | 15 | 15 | 1 | 27571-27573 | |
ORF7a | 60 | S60X | nonsyn | AGC | TAA | 15 | 14 | 0.933333 | 27571-27573 | |
ORF7a | 60 | S60X | nonsyn | AgC | TgA | 15 | 1 | 0.0666667 | 27571-27573 | |
ORF7a | 60 | S60Y | nonsyn | AGc | TAc | 13 | 12 | 0.923077 | 27571-27573 | |
ORF7a | 60 | S60Y | nonsyn | AGC | TAT | 13 | 1 | 0.0769231 | 27571-27573 | |
ORF7a | 60 | S60A | nonsyn | AGC | GCA | 9 | 3 | 0.333333 | 27571-27573 | |
ORF7a | 60 | S60A | nonsyn | AGc | GCc | 9 | 3 | 0.333333 | 27571-27573 | |
ORF7a | 60 | S60A | nonsyn | AGC | GCT | 9 | 3 | 0.333333 | 27571-27573 | |
ORF7a | 60 | S60F | nonsyn | AGc | TTc | 7 | 5 | 0.714286 | 27571-27573 | |
ORF7a | 60 | S60V | nonsyn | AGc | GTc | 7 | 4 | 0.571429 | 27571-27573 | |
ORF7a | 60 | S60V | nonsyn | AGC | GTA | 7 | 2 | 0.285714 | 27571-27573 | |
ORF7a | 60 | S60F | nonsyn | AGC | TTT | 7 | 2 | 0.285714 | 27571-27573 | |
ORF7a | 60 | S60V | nonsyn | AGC | GTT | 7 | 1 | 0.142857 | 27571-27573 | |
ORF7a | 60 | S60H | nonsyn | AGc | CAc | 6 | 5 | 0.833333 | 27571-27573 | |
ORF7a | 60 | S60H | nonsyn | AGC | CAT | 6 | 1 | 0.166667 | 27571-27573 | |
ORF7a | 60 | S60L | nonsyn | AGC | TTA | 5 | 3 | 0.6 | 27571-27573 | |
ORF7a | 60 | S60L | nonsyn | AGc | CTc | 5 | 2 | 0.4 | 27571-27573 | |
ORF7a | 60 | S60P | nonsyn | AGC | CCA | 4 | 2 | 0.5 | 27571-27573 | |
ORF7a | 60 | S60P | nonsyn | AGC | CCT | 4 | 1 | 0.25 | 27571-27573 | |
ORF7a | 60 | S60P | nonsyn | AGc | CCc | 4 | 1 | 0.25 | 27571-27573 | |
ORF7a | 60 | S60D | nonsyn | AGC | GAT | 3 | 2 | 0.666667 | 27571-27573 | |
ORF7a | 60 | S60D | nonsyn | AGc | GAc | 3 | 1 | 0.333333 | 27571-27573 | |
ORF7a | 60 | S60W | nonsyn | AgC | TgG | 2 | 2 | 1 | 27571-27573 | |
ORF7a | 60 | S60Q | nonsyn | AGC | CAA | 1 | 1 | 1 | 27571-27573 | |
ORF7a | 60 | S60E | nonsyn | AGC | GAA | 1 | 1 | 1 | 27571-27573 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 60 | S60del | AGC | --- | 35155 | 35155 | All | 0.006724 |
ORF7a | 60 | S60del | AGC | --- | 12901 | 12901 | AY.4 | 0.020079 |
ORF7a | 60 | S60del | AGC | --- | 4548 | 4548 | B.1.1.7 | 0.004071 |
ORF7a | 60 | S60del | AGC | --- | 3555 | 3555 | B.1.617.2 | 0.013386 |
ORF7a | 60 | S60S | agC | agT | 1755 | 1758 | All | 0.000336 |
ORF7a | 60 | S60S | AGc | TCc | 2 | 1758 | All | 0 |
ORF7a | 60 | S60S | AGC | TCA | 1 | 1758 | All | 0 |
ORF7a | 60 | S60del | AGC | --- | 1658 | 1658 | AY.120.1 | 0.532263 |
ORF7a | 60 | S60del | AGC | --- | 1623 | 1623 | AY.25 | 0.009762 |
ORF7a | 60 | S60del | AGC | --- | 1026 | 1026 | AY.43 | 0.004546 |
ORF7a | 60 | S60del | AGC | --- | 888 | 888 | AY.103 | 0.005514 |
ORF7a | 60 | S60N | aGc | aAc | 754 | 777 | All | 0.000144 |
ORF7a | 60 | S60N | aGC | aAT | 23 | 777 | All | 0.000004 |
ORF7a | 60 | S60del | AGC | --- | 673 | 673 | AY.44 | 0.004096 |
ORF7a | 60 | S60del | AGC | --- | 529 | 529 | AY.3 | 0.005262 |
ORF7a | 60 | S60S | agC | agT | 510 | 510 | AY.111 | 0.093407 |
ORF7a | 60 | S60del | AGC | --- | 458 | 458 | AY.26 | 0.012966 |
ORF7a | 60 | S60del2 | aGC | a-- | 406 | 444 | All | 0.000078 |
ORF7a | 60 | S60del2 | AGc | --c | 35 | 444 | All | 0.000007 |
ORF7a | 60 | S60del2 | AGC | --N | 2 | 444 | All | 0 |
ORF7a | 60 | S60del2 | AGC | G-- | 1 | 444 | All | 0 |
ORF7a | 60 | S60del1 | Agc | -gc | 252 | 415 | All | 0.000048 |
ORF7a | 60 | S60del1 | agC | ag- | 150 | 415 | All | 0.000029 |
ORF7a | 60 | S60del1 | AGC | -NN | 6 | 415 | All | 0.000001 |
ORF7a | 60 | S60del1 | aGc | a-c | 3 | 415 | All | 0.000001 |
ORF7a | 60 | S60del1 | AGc | -Ac | 1 | 415 | All | 0 |
ORF7a | 60 | S60del1 | aGC | a-N | 1 | 415 | All | 0 |
ORF7a | 60 | S60del1 | AgC | Ng- | 1 | 415 | All | 0 |
ORF7a | 60 | S60del1 | aGC | aA- | 1 | 415 | All | 0 |
ORF7a | 60 | S60del | AGC | --- | 407 | 407 | AY.39 | 0.010058 |
ORF7a | 60 | S60S | agC | agT | 354 | 355 | B.1.617.2 | 0.001333 |
ORF7a | 60 | S60S | AGc | TCc | 1 | 355 | B.1.617.2 | 0.000004 |
ORF7a | 60 | S60del | AGC | --- | 349 | 349 | AY.102 | 0.009253 |
ORF7a | 60 | S60S | agC | agT | 296 | 296 | AY.43 | 0.001311 |
ORF7a | 60 | S60del | AGC | --- | 291 | 291 | AY.4.2 | 0.006311 |
ORF7a | 60 | S60del | AGC | --- | 280 | 280 | AY.46.5 | 0.055556 |
ORF7a | 60 | S60I | aGc | aTc | 243 | 272 | All | 0.000046 |
ORF7a | 60 | S60I | aGC | aTT | 23 | 272 | All | 0.000004 |
ORF7a | 60 | S60I | aGC | aTA | 6 | 272 | All | 0.000001 |
ORF7a | 60 | S60del | AGC | --- | 246 | 246 | AY.120 | 0.009146 |
ORF7a | 60 | S60del | AGC | --- | 230 | 230 | AY.29 | 0.003628 |
ORF7a | 60 | S60N | aGc | aAc | 224 | 224 | B.1.214.2 | 0.134293 |
ORF7a | 60 | S60del | AGC | --- | 224 | 224 | B.1.351 | 0.006659 |
ORF7a | 60 | S60del | AGC | --- | 185 | 185 | B.1.526 | 0.004348 |
ORF7a | 60 | S60del | AGC | --- | 184 | 184 | B.1.177.21 | 0.014071 |
ORF7a | 60 | S60S | agC | agT | 179 | 179 | B.1.1.7 | 0.00016 |
ORF7a | 60 | S60del | AGC | --- | 178 | 178 | AY.98 | 0.014061 |
ORF7a | 60 | S60N | aGc | aAc | 168 | 168 | B.1.1.7 | 0.00015 |
ORF7a | 60 | S60del | AGC | --- | 155 | 155 | AY.5 | 0.003201 |
ORF7a | 60 | S60del | AGC | --- | 149 | 149 | B.1.177 | 0.001962 |
ORF7a | 60 | S60del | AGC | --- | 144 | 144 | B.1 | 0.001319 |
ORF7a | 60 | S60del | AGC | --- | 141 | 141 | AY.100 | 0.006487 |
ORF7a | 60 | S60N | aGc | aAc | 137 | 137 | AY.4 | 0.000213 |
ORF7a | 60 | S60del | AGC | --- | 135 | 135 | AY.119 | 0.004767 |
ORF7a | 60 | S60del | AGC | --- | 134 | 134 | AY.47 | 0.004168 |
ORF7a | 60 | S60del | AGC | --- | 133 | 133 | AY.54 | 0.012681 |
ORF7a | 60 | S60del | AGC | --- | 118 | 118 | AY.6 | 0.004853 |
ORF7a | 60 | S60del | AGC | --- | 118 | 118 | AY.7.1 | 0.013299 |
ORF7a | 60 | S60S | agC | agT | 115 | 115 | AY.4 | 0.000179 |
ORF7a | 60 | S60del1 | Agc | -gc | 93 | 109 | B.1.1.7 | 0.000083 |
ORF7a | 60 | S60del1 | agC | ag- | 12 | 109 | B.1.1.7 | 0.000011 |
ORF7a | 60 | S60del1 | AGC | -NN | 3 | 109 | B.1.1.7 | 0.000003 |
ORF7a | 60 | S60del1 | AgC | Ng- | 1 | 109 | B.1.1.7 | 0.000001 |
ORF7a | 60 | S60del | AGC | --- | 108 | 108 | B.1.2 | 0.000951 |
ORF7a | 60 | S60del1 | agC | ag- | 66 | 103 | AY.4 | 0.000103 |
ORF7a | 60 | S60del1 | Agc | -gc | 36 | 103 | AY.4 | 0.000056 |
ORF7a | 60 | S60del1 | AGC | -NN | 1 | 103 | AY.4 | 0.000002 |
ORF7a | 60 | S60del | AGC | --- | 92 | 92 | AY.46.4 | 0.015134 |
ORF7a | 60 | S60del2 | aGC | a-- | 87 | 91 | B.1.1.7 | 0.000078 |
ORF7a | 60 | S60del2 | AGc | --c | 3 | 91 | B.1.1.7 | 0.000003 |
ORF7a | 60 | S60del2 | AGC | --N | 1 | 91 | B.1.1.7 | 0.000001 |
ORF7a | 60 | S60del | AGC | --- | 87 | 87 | AY.33 | 0.00581 |
ORF7a | 60 | S60del1 | Agc | -gc | 82 | 84 | AY.29 | 0.001293 |
ORF7a | 60 | S60del1 | agC | ag- | 2 | 84 | AY.29 | 0.000032 |
ORF7a | 60 | S60del | AGC | --- | 79 | 79 | AY.5.4 | 0.021859 |
ORF7a | 60 | S60del | AGC | --- | 77 | 77 | AY.46.6 | 0.00556 |
ORF7a | 60 | S60G | Agc | Ggc | 69 | 72 | All | 0.000013 |
ORF7a | 60 | S60G | AgC | GgA | 3 | 72 | All | 0.000001 |
ORF7a | 60 | S60del | AGC | --- | 72 | 72 | P.1 | 0.001134 |
ORF7a | 60 | S60del | AGC | --- | 71 | 71 | B.1.621 | 0.006285 |
ORF7a | 60 | S60del | AGC | --- | 69 | 69 | AY.3.1 | 0.005883 |
ORF7a | 60 | S60del | AGC | --- | 65 | 65 | AY.42 | 0.002615 |
ORF7a | 60 | S60R | agC | agA | 50 | 63 | All | 0.00001 |
ORF7a | 60 | S60R | Agc | Cgc | 6 | 63 | All | 0.000001 |
ORF7a | 60 | S60R | agC | agG | 3 | 63 | All | 0.000001 |
ORF7a | 60 | S60R | AgC | CgT | 2 | 63 | All | 0 |
ORF7a | 60 | S60R | AgC | CgG | 1 | 63 | All | 0 |
ORF7a | 60 | S60R | AgC | CgA | 1 | 63 | All | 0 |
ORF7a | 60 | S60del | AGC | --- | 63 | 63 | AY.20 | 0.002449 |
ORF7a | 60 | S60del | AGC | --- | 63 | 63 | AY.75 | 0.003529 |
ORF7a | 60 | S60del | AGC | --- | 61 | 61 | AY.45 | 0.007423 |
ORF7a | 60 | S60del | AGC | --- | 60 | 60 | AY.113 | 0.008543 |
ORF7a | 60 | S60I | aGc | aTc | 60 | 60 | AY.4 | 0.000093 |
ORF7a | 60 | S60del | AGC | --- | 58 | 58 | AY.39.1 | 0.002298 |
ORF7a | 60 | S60del | AGC | --- | 58 | 58 | AY.46 | 0.006037 |
ORF7a | 60 | S60del | AGC | --- | 55 | 55 | B.1.218 | 0.283505 |
ORF7a | 60 | S60del | AGC | --- | 54 | 54 | AY.23 | 0.003766 |
ORF7a | 60 | S60S | agC | agT | 54 | 54 | AY.44 | 0.000329 |
ORF7a | 60 | S60del | AGC | --- | 52 | 52 | AY.9.2 | 0.00191 |
ORF7a | 60 | S60del | AGC | --- | 52 | 52 | B.1.177.4 | 0.010975 |
ORF7a | 60 | S60del | AGC | --- | 50 | 50 | AY.116.1 | 0.015571 |
ORF7a | 60 | S60C | Agc | Tgc | 47 | 48 | All | 0.000009 |
ORF7a | 60 | S60C | AgC | TgT | 1 | 48 | All | 0 |
ORF7a | 60 | S60del | AGC | --- | 46 | 46 | AY.118 | 0.002882 |
ORF7a | 60 | S60del | AGC | --- | 46 | 46 | AY.13 | 0.007405 |
ORF7a | 60 | S60del | AGC | --- | 46 | 46 | AY.9 | 0.003109 |
ORF7a | 60 | S60del | AGC | --- | 46 | 46 | B.1.429 | 0.001082 |
ORF7a | 60 | S60del | AGC | --- | 45 | 45 | AY.91 | 0.032871 |
ORF7a | 60 | S60del | AGC | --- | 45 | 45 | AY.98.1 | 0.002179 |
ORF7a | 60 | S60del | AGC | --- | 44 | 44 | AY.107 | 0.020503 |
ORF7a | 60 | S60del | AGC | --- | 44 | 44 | B.1.1 | 0.000798 |
ORF7a | 60 | S60del | AGC | --- | 42 | 42 | P.1.14 | 0.002008 |
ORF7a | 60 | S60del | AGC | --- | 41 | 41 | AY.110 | 0.00462 |
ORF7a | 60 | S60del | AGC | --- | 41 | 41 | AY.117 | 0.003465 |
ORF7a | 60 | S60del | AGC | --- | 41 | 41 | B.1.1.284 | 0.004403 |
ORF7a | 60 | S60del | AGC | --- | 40 | 40 | AY.4.2.1 | 0.005959 |
ORF7a | 60 | S60del | AGC | --- | 40 | 40 | B.1.160 | 0.001248 |
ORF7a | 60 | S60del | AGC | --- | 38 | 38 | AY.34 | 0.003685 |
ORF7a | 60 | S60del2 | aGC | a-- | 38 | 38 | AY.44 | 0.000231 |
ORF7a | 60 | S60del2 | aGC | a-- | 38 | 38 | B.1.2 | 0.000335 |
ORF7a | 60 | S60T | aGc | aCc | 29 | 37 | All | 0.000006 |
ORF7a | 60 | S60T | aGC | aCA | 5 | 37 | All | 0.000001 |
ORF7a | 60 | S60T | aGC | aCT | 2 | 37 | All | 0 |
ORF7a | 60 | S60T | aGC | aCG | 1 | 37 | All | 0 |
ORF7a | 60 | S60del2 | aGC | a-- | 31 | 35 | AY.43 | 0.000137 |
ORF7a | 60 | S60del2 | AGc | --c | 3 | 35 | AY.43 | 0.000013 |
ORF7a | 60 | S60del2 | AGC | G-- | 1 | 35 | AY.43 | 0.000004 |
ORF7a | 60 | S60del | AGC | --- | 35 | 35 | AY.7 | 0.00686 |
ORF7a | 60 | S60del | AGC | --- | 35 | 35 | AY.99.2 | 0.003226 |
ORF7a | 60 | S60del | AGC | --- | 33 | 33 | B.1.1.214 | 0.00183 |
ORF7a | 60 | S60I | aGc | aTc | 30 | 33 | B.1.1.7 | 0.000027 |
ORF7a | 60 | S60I | aGC | aTT | 3 | 33 | B.1.1.7 | 0.000003 |
ORF7a | 60 | S60del2 | aGC | a-- | 27 | 30 | AY.4 | 0.000042 |
ORF7a | 60 | S60del2 | AGc | --c | 2 | 30 | AY.4 | 0.000003 |
ORF7a | 60 | S60del2 | AGC | --N | 1 | 30 | AY.4 | 0.000002 |
ORF7a | 60 | S60del | AGC | --- | 28 | 28 | AY.60 | 0.026266 |
ORF7a | 60 | S60del | AGC | --- | 28 | 28 | AY.61 | 0.002934 |
ORF7a | 60 | S60del | AGC | --- | 27 | 27 | AY.121 | 0.003654 |
ORF7a | 60 | S60N | aGc | aAc | 27 | 27 | B.1.258 | 0.001797 |
ORF7a | 60 | S60del | AGC | --- | 27 | 27 | B.1.637 | 0.001973 |
ORF7a | 60 | S60del | AGC | --- | 26 | 26 | AY.111 | 0.004762 |
ORF7a | 60 | S60del | AGC | --- | 26 | 26 | AY.19 | 0.029647 |
ORF7a | 60 | S60del | AGC | --- | 26 | 26 | AY.7.2 | 0.014541 |
ORF7a | 60 | S60del | AGC | --- | 26 | 26 | AY.9.1 | 0.002177 |
ORF7a | 60 | S60del2 | aGC | a-- | 23 | 26 | B.1.617.2 | 0.000087 |
ORF7a | 60 | S60del2 | AGc | --c | 3 | 26 | B.1.617.2 | 0.000011 |
ORF7a | 60 | S60S | agC | agT | 25 | 25 | AY.34.1 | 0.012749 |
ORF7a | 60 | S60del | AGC | --- | 25 | 25 | B.1.596 | 0.002178 |
ORF7a | 60 | S60N | aGc | aAc | 24 | 24 | AY.43 | 0.000106 |
ORF7a | 60 | S60del2 | aGC | a-- | 24 | 24 | AY.75 | 0.001345 |
ORF7a | 60 | S60del2 | aGC | a-- | 23 | 23 | AY.3 | 0.000229 |
ORF7a | 60 | S60I | aGc | aTc | 23 | 23 | AY.3.1 | 0.001961 |
ORF7a | 60 | S60del | AGC | --- | 23 | 23 | AY.36 | 0.003409 |
ORF7a | 60 | S60del | AGC | --- | 23 | 23 | C.37 | 0.002669 |
ORF7a | 60 | S60del | AGC | --- | 22 | 22 | AY.106 | 0.007368 |
ORF7a | 60 | S60S | agC | agT | 21 | 21 | AY.119 | 0.000741 |
ORF7a | 60 | S60del2 | AGc | --c | 12 | 21 | AY.25 | 0.000072 |
ORF7a | 60 | S60del2 | aGC | a-- | 9 | 21 | AY.25 | 0.000054 |
ORF7a | 60 | S60del | AGC | --- | 21 | 21 | AY.30 | 0.00831 |
ORF7a | 60 | S60S | agC | agT | 21 | 21 | AY.34 | 0.002036 |
ORF7a | 60 | S60del | AGC | --- | 21 | 21 | AY.37 | 0.006637 |
ORF7a | 60 | S60I | aGc | aTc | 15 | 20 | AY.25 | 0.00009 |
ORF7a | 60 | S60I | aGC | aTA | 4 | 20 | AY.25 | 0.000024 |
ORF7a | 60 | S60I | aGC | aTT | 1 | 20 | AY.25 | 0.000006 |
ORF7a | 60 | S60del | AGC | --- | 20 | 20 | AY.74 | 0.002313 |
ORF7a | 60 | S60del | AGC | --- | 20 | 20 | B.1.214.2 | 0.01199 |
ORF7a | 60 | S60del | AGC | --- | 20 | 20 | B.1.427 | 0.00101 |
ORF7a | 60 | S60del | AGC | --- | 20 | 20 | R.1 | 0.0018 |
ORF7a | 60 | S60del | AGC | --- | 19 | 19 | AY.116 | 0.005449 |
ORF7a | 60 | S60S | agC | agT | 19 | 19 | AY.33 | 0.001269 |
ORF7a | 60 | S60del | AGC | --- | 19 | 19 | B.1.1.222 | 0.003876 |
ORF7a | 60 | S60del | AGC | --- | 19 | 19 | Q.8 | 0.003133 |
ORF7a | 60 | S60del1 | agC | ag- | 15 | 17 | AY.103 | 0.000093 |
ORF7a | 60 | S60del1 | Agc | -gc | 2 | 17 | AY.103 | 0.000012 |
ORF7a | 60 | S60del | AGC | --- | 17 | 17 | AY.14 | 0.001496 |
ORF7a | 60 | S60del | AGC | --- | 17 | 17 | AY.4.5 | 0.001827 |
ORF7a | 60 | S60I | aGc | aTc | 17 | 17 | AY.43 | 0.000075 |
ORF7a | 60 | S60del | AGC | --- | 17 | 17 | B.1.1.519 | 0.000675 |
ORF7a | 60 | S60del | AGC | --- | 16 | 16 | AY.1 | 0.006332 |
ORF7a | 60 | S60del | AGC | --- | 16 | 16 | AY.62 | 0.006972 |
ORF7a | 60 | S60N | aGc | aAc | 16 | 16 | B.1 | 0.000147 |
ORF7a | 60 | S60C | Agc | Tgc | 16 | 16 | B.1.1.7 | 0.000014 |
ORF7a | 60 | S60K | aGC | aAA | 15 | 15 | All | 0.000003 |
ORF7a | 60 | S60X | AGC | TAA | 14 | 15 | All | 0.000003 |
ORF7a | 60 | S60X | AgC | TgA | 1 | 15 | All | 0 |
ORF7a | 60 | S60del1 | agC | ag- | 15 | 15 | AY.120 | 0.000558 |
ORF7a | 60 | S60N | aGc | aAc | 13 | 15 | AY.25 | 0.000078 |
ORF7a | 60 | S60N | aGC | aAT | 2 | 15 | AY.25 | 0.000012 |
ORF7a | 60 | S60del | AGC | --- | 15 | 15 | AY.46.2 | 0.00953 |
ORF7a | 60 | S60N | aGC | aAT | 15 | 15 | AY.52 | 0.012215 |
ORF7a | 60 | S60del | AGC | --- | 14 | 14 | AY.114 | 0.003235 |
ORF7a | 60 | S60del | AGC | --- | 14 | 14 | AY.84 | 0.006124 |
ORF7a | 60 | S60del | AGC | --- | 14 | 14 | B.1.1.258 | 0.045603 |
ORF7a | 60 | S60N | aGc | aAc | 14 | 14 | B.1.1.519 | 0.000556 |
ORF7a | 60 | S60del | AGC | --- | 14 | 14 | B.1.243 | 0.000974 |
ORF7a | 60 | S60Y | AGc | TAc | 12 | 13 | All | 0.000002 |
ORF7a | 60 | S60Y | AGC | TAT | 1 | 13 | All | 0 |
ORF7a | 60 | S60del2 | aGC | a-- | 13 | 13 | AY.46.2 | 0.008259 |
ORF7a | 60 | S60del | AGC | --- | 13 | 13 | AY.68 | 0.003559 |
ORF7a | 60 | S60G | Agc | Ggc | 13 | 13 | B.1.1.7 | 0.000012 |
ORF7a | 60 | S60del | AGC | --- | 13 | 13 | B.1.525 | 0.001471 |
ORF7a | 60 | S60N | aGc | aAc | 11 | 13 | B.1.617.2 | 0.000041 |
ORF7a | 60 | S60N | aGC | aAT | 2 | 13 | B.1.617.2 | 0.000008 |
ORF7a | 60 | S60del | AGC | --- | 13 | 13 | D.2 | 0.000976 |
ORF7a | 60 | S60S | agC | agT | 12 | 12 | AY.103 | 0.000075 |
ORF7a | 60 | S60N | aGc | aAc | 12 | 12 | AY.103 | 0.000075 |
ORF7a | 60 | S60del | AGC | --- | 12 | 12 | AY.90 | 0.008214 |
ORF7a | 60 | S60del | AGC | --- | 12 | 12 | B.1.324 | 0.019262 |
ORF7a | 60 | S60del1 | Agc | -gc | 6 | 12 | B.1.617.2 | 0.000023 |
ORF7a | 60 | S60del1 | agC | ag- | 4 | 12 | B.1.617.2 | 0.000015 |
ORF7a | 60 | S60del1 | aGc | a-c | 2 | 12 | B.1.617.2 | 0.000008 |
ORF7a | 60 | S60del | AGC | --- | 11 | 11 | AY.12 | 0.003477 |
ORF7a | 60 | S60del | AGC | --- | 11 | 11 | AY.35 | 0.002564 |
ORF7a | 60 | S60I | aGc | aTc | 11 | 11 | AY.44 | 0.000067 |
ORF7a | 60 | S60del2 | aGC | a-- | 11 | 11 | AY.5 | 0.000227 |
ORF7a | 60 | S60del | AGC | --- | 11 | 11 | AY.87 | 0.009159 |
ORF7a | 60 | S60del | AGC | --- | 11 | 11 | AY.99 | 0.011542 |
ORF7a | 60 | S60del | AGC | --- | 11 | 11 | B.1.177.60 | 0.002403 |
ORF7a | 60 | S60N | aGc | aAc | 11 | 11 | B.1.210 | 0.023454 |
ORF7a | 60 | S60I | aGc | aTc | 10 | 11 | B.1.617.2 | 0.000038 |
ORF7a | 60 | S60I | aGC | aTT | 1 | 11 | B.1.617.2 | 0.000004 |
ORF7a | 60 | S60del | AGC | --- | 10 | 10 | B.1.177.56 | 0.006676 |
ORF7a | 60 | S60del | AGC | --- | 10 | 10 | B.1.391 | 0.011274 |
ORF7a | 60 | S60del | AGC | --- | 10 | 10 | B.1.628 | 0.003524 |
ORF7a | 60 | S60A | AGc | GCc | 3 | 9 | All | 0.000001 |
ORF7a | 60 | S60A | AGC | GCT | 3 | 9 | All | 0.000001 |
ORF7a | 60 | S60A | AGC | GCA | 3 | 9 | All | 0.000001 |
ORF7a | 60 | S60I | aGc | aTc | 9 | 9 | AY.103 | 0.000056 |
ORF7a | 60 | S60del2 | aGC | a-- | 9 | 9 | AY.103 | 0.000056 |
ORF7a | 60 | S60del | AGC | --- | 9 | 9 | AY.109 | 0.006657 |
ORF7a | 60 | S60del | AGC | --- | 9 | 9 | AY.52 | 0.007329 |
ORF7a | 60 | S60G | Agc | Ggc | 9 | 9 | B.1.1.214 | 0.000499 |
ORF7a | 60 | S60S | agC | agT | 9 | 9 | B.1.1.519 | 0.000357 |
ORF7a | 60 | S60X | AGC | TAA | 9 | 9 | B.1.177.21 | 0.000688 |
ORF7a | 60 | S60del | AGC | --- | 9 | 9 | B.1.258.9 | 0.045 |
ORF7a | 60 | S60del | AGC | --- | 9 | 9 | L.1 | 0.017143 |
ORF7a | 60 | S60del | AGC | --- | 9 | 9 | Q.1 | 0.001137 |
ORF7a | 60 | S60del | AGC | --- | 8 | 8 | A.21 | 0.022161 |
ORF7a | 60 | S60del | AGC | --- | 8 | 8 | AY.10 | 0.00424 |
ORF7a | 60 | S60S | agC | agT | 8 | 8 | AY.102 | 0.000212 |
ORF7a | 60 | S60del1 | Agc | -gc | 7 | 8 | AY.25 | 0.000042 |
ORF7a | 60 | S60del1 | aGC | a-N | 1 | 8 | AY.25 | 0.000006 |
ORF7a | 60 | S60del | AGC | --- | 8 | 8 | AY.27 | 0.000518 |
ORF7a | 60 | S60I | aGc | aTc | 8 | 8 | AY.33 | 0.000534 |
ORF7a | 60 | S60del | AGC | --- | 8 | 8 | AY.59 | 0.004237 |
ORF7a | 60 | S60del | AGC | --- | 8 | 8 | AY.85 | 0.003417 |
ORF7a | 60 | S60del | AGC | --- | 8 | 8 | B.1.1.231 | 0.024768 |
ORF7a | 60 | S60N | aGc | aAc | 8 | 8 | B.1.2 | 0.00007 |
ORF7a | 60 | S60G | Agc | Ggc | 8 | 8 | L.3 | 0.028369 |
ORF7a | 60 | S60F | AGc | TTc | 5 | 7 | All | 0.000001 |
ORF7a | 60 | S60V | AGc | GTc | 4 | 7 | All | 0.000001 |
ORF7a | 60 | S60V | AGC | GTA | 2 | 7 | All | 0 |
ORF7a | 60 | S60F | AGC | TTT | 2 | 7 | All | 0 |
ORF7a | 60 | S60V | AGC | GTT | 1 | 7 | All | 0 |
ORF7a | 60 | S60N | aGc | aAc | 7 | 7 | AY.102 | 0.000186 |
ORF7a | 60 | S60G | Agc | Ggc | 6 | 7 | AY.25 | 0.000036 |
ORF7a | 60 | S60G | AgC | GgA | 1 | 7 | AY.25 | 0.000006 |
ORF7a | 60 | S60del | AGC | --- | 7 | 7 | AY.32 | 0.003727 |
ORF7a | 60 | S60G | Agc | Ggc | 7 | 7 | AY.4 | 0.000011 |
ORF7a | 60 | S60del | AGC | --- | 7 | 7 | AY.4.4 | 0.002864 |
ORF7a | 60 | S60S | agC | agT | 7 | 7 | AY.46 | 0.000729 |
ORF7a | 60 | S60S | agC | agT | 7 | 7 | AY.5.4 | 0.001937 |
ORF7a | 60 | S60del | AGC | --- | 7 | 7 | AY.65 | 0.003731 |
ORF7a | 60 | S60del | AGC | --- | 7 | 7 | AY.71 | 0.003325 |
ORF7a | 60 | S60del | AGC | --- | 7 | 7 | AY.75.1 | 0.001262 |
ORF7a | 60 | S60del | AGC | --- | 7 | 7 | AY.92 | 0.002011 |
ORF7a | 60 | S60S | agC | agT | 7 | 7 | B.1 | 0.000064 |
ORF7a | 60 | S60del | AGC | --- | 7 | 7 | B.1.1.3 | 0.06087 |
ORF7a | 60 | S60C | Agc | Tgc | 7 | 7 | B.1.617.2 | 0.000026 |
ORF7a | 60 | S60del | AGC | --- | 7 | 7 | P.1.15 | 0.001626 |
ORF7a | 60 | S60del | AGC | --- | 7 | 7 | P.1.2 | 0.008092 |
ORF7a | 60 | S60H | AGc | CAc | 5 | 6 | All | 0.000001 |
ORF7a | 60 | S60H | AGC | CAT | 1 | 6 | All | 0 |
ORF7a | 60 | S60del | AGC | --- | 6 | 6 | AY.108 | 0.006615 |
ORF7a | 60 | S60del | AGC | --- | 6 | 6 | AY.16 | 0.002278 |
ORF7a | 60 | S60I | aGc | aTc | 6 | 6 | AY.20 | 0.000233 |
ORF7a | 60 | S60del | AGC | --- | 6 | 6 | AY.29.1 | 0.001323 |
ORF7a | 60 | S60del | AGC | --- | 6 | 6 | AY.34.1 | 0.00306 |
ORF7a | 60 | S60del | AGC | --- | 6 | 6 | AY.46.1 | 0.00616 |
ORF7a | 60 | S60N | aGc | aAc | 6 | 6 | AY.5 | 0.000124 |
ORF7a | 60 | S60del1 | agC | ag- | 5 | 6 | AY.7 | 0.00098 |
ORF7a | 60 | S60del1 | Agc | -gc | 1 | 6 | AY.7 | 0.000196 |
ORF7a | 60 | S60S | agC | agT | 6 | 6 | AY.92 | 0.001724 |
ORF7a | 60 | S60I | aGC | aTT | 4 | 6 | B.1.1 | 0.000073 |
ORF7a | 60 | S60I | aGc | aTc | 2 | 6 | B.1.1 | 0.000036 |
ORF7a | 60 | S60del | AGC | --- | 6 | 6 | B.1.177.20 | 0.009105 |
ORF7a | 60 | S60del | AGC | --- | 6 | 6 | B.1.258 | 0.000399 |
ORF7a | 60 | S60del | AGC | --- | 6 | 6 | B.1.595 | 0.001566 |
ORF7a | 60 | S60S | agC | agT | 6 | 6 | C.37 | 0.000696 |
ORF7a | 60 | S60L | AGC | TTA | 3 | 5 | All | 0.000001 |
ORF7a | 60 | S60L | AGc | CTc | 2 | 5 | All | 0 |
ORF7a | 60 | S60R | agC | agA | 5 | 5 | AY.103 | 0.000031 |
ORF7a | 60 | S60V | AGc | GTc | 2 | 5 | AY.25 | 0.000012 |
ORF7a | 60 | S60V | AGC | GTA | 2 | 5 | AY.25 | 0.000012 |
ORF7a | 60 | S60V | AGC | GTT | 1 | 5 | AY.25 | 0.000006 |
ORF7a | 60 | S60N | aGc | aAc | 5 | 5 | AY.39 | 0.000124 |
ORF7a | 60 | S60del2 | aGC | a-- | 5 | 5 | AY.42 | 0.000201 |
ORF7a | 60 | S60C | Agc | Tgc | 5 | 5 | AY.44 | 0.00003 |
ORF7a | 60 | S60N | aGc | aAc | 5 | 5 | AY.44 | 0.00003 |
ORF7a | 60 | S60S | agC | agT | 5 | 5 | AY.46.1 | 0.005133 |
ORF7a | 60 | S60del | AGC | --- | 5 | 5 | AY.48 | 0.002326 |
ORF7a | 60 | S60del | AGC | --- | 5 | 5 | AY.70 | 0.001043 |
ORF7a | 60 | S60del | AGC | --- | 5 | 5 | AY.80 | 0.005643 |
ORF7a | 60 | S60S | agC | agT | 5 | 5 | AY.84 | 0.002187 |
ORF7a | 60 | S60del | AGC | --- | 5 | 5 | AY.93 | 0.001365 |
ORF7a | 60 | S60del | AGC | --- | 5 | 5 | AY.95 | 0.003805 |
ORF7a | 60 | S60R | agC | agA | 5 | 5 | AY.98.1 | 0.000242 |
ORF7a | 60 | S60R | agC | agA | 5 | 5 | AY.99.2 | 0.000461 |
ORF7a | 60 | S60I | aGc | aTc | 3 | 5 | B.1 | 0.000027 |
ORF7a | 60 | S60I | aGC | aTT | 2 | 5 | B.1 | 0.000018 |
ORF7a | 60 | S60del | AGC | --- | 5 | 5 | B.1.1.37 | 0.000964 |
ORF7a | 60 | S60del | AGC | --- | 5 | 5 | B.1.1.56 | 0.089286 |
ORF7a | 60 | S60R | agC | agA | 5 | 5 | B.1.1.7 | 0.000004 |
ORF7a | 60 | S60del1 | Agc | -gc | 5 | 5 | B.1.177 | 0.000066 |
ORF7a | 60 | S60N | aGc | aAc | 4 | 5 | B.1.177 | 0.000053 |
ORF7a | 60 | S60N | aGC | aAT | 1 | 5 | B.1.177 | 0.000013 |
ORF7a | 60 | S60S | agC | agT | 5 | 5 | B.1.2 | 0.000044 |
ORF7a | 60 | S60del1 | Agc | -gc | 3 | 5 | B.1.2 | 0.000026 |
ORF7a | 60 | S60del1 | agC | ag- | 2 | 5 | B.1.2 | 0.000018 |
ORF7a | 60 | S60del | AGC | --- | 5 | 5 | B.1.234 | 0.00066 |
ORF7a | 60 | S60S | agC | agT | 5 | 5 | B.1.258 | 0.000333 |
ORF7a | 60 | S60del | AGC | --- | 5 | 5 | B.1.258.17 | 0.00052 |
ORF7a | 60 | S60R | Agc | Cgc | 2 | 5 | B.1.351 | 0.000059 |
ORF7a | 60 | S60R | AgC | CgT | 1 | 5 | B.1.351 | 0.00003 |
ORF7a | 60 | S60R | agC | agA | 1 | 5 | B.1.351 | 0.00003 |
ORF7a | 60 | S60R | AgC | CgA | 1 | 5 | B.1.351 | 0.00003 |
ORF7a | 60 | S60del | AGC | --- | 5 | 5 | B.1.375 | 0.004098 |
ORF7a | 60 | S60del2 | aGC | a-- | 4 | 5 | B.1.526 | 0.000094 |
ORF7a | 60 | S60del2 | AGc | --c | 1 | 5 | B.1.526 | 0.000024 |
ORF7a | 60 | S60T | aGc | aCc | 4 | 5 | B.1.617.2 | 0.000015 |
ORF7a | 60 | S60T | aGC | aCG | 1 | 5 | B.1.617.2 | 0.000004 |
ORF7a | 60 | S60del | AGC | --- | 5 | 5 | B.1.70 | 0.121951 |
ORF7a | 60 | S60del | AGC | --- | 5 | 5 | P.2 | 0.000933 |
ORF7a | 60 | S60A | AGc | GCc | 2 | 4 | 0.111111 | |
ORF7a | 60 | S60T | aGC | aCA | 2 | 4 | 0.111111 | |
ORF7a | 60 | S60A | AGC | GCA | 2 | 4 | 0.111111 | |
ORF7a | 60 | S60G | Agc | Ggc | 2 | 4 | 0.111111 | |
ORF7a | 60 | S60G | AgC | GgA | 2 | 4 | 0.111111 | |
ORF7a | 60 | S60T | aGc | aCc | 2 | 4 | 0.111111 | |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | A | 0.001548 |
ORF7a | 60 | S60P | AGC | CCA | 2 | 4 | All | 0 |
ORF7a | 60 | S60P | AGc | CCc | 1 | 4 | All | 0 |
ORF7a | 60 | S60P | AGC | CCT | 1 | 4 | All | 0 |
ORF7a | 60 | S60del2 | AGc | --c | 2 | 4 | AY.100 | 0.000092 |
ORF7a | 60 | S60del2 | aGC | a-- | 2 | 4 | AY.100 | 0.000092 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | AY.101 | 0.001962 |
ORF7a | 60 | S60del2 | aGC | a-- | 4 | 4 | AY.118 | 0.000251 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | AY.22 | 0.008368 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | AY.24 | 0.001724 |
ORF7a | 60 | S60K | aGC | aAA | 4 | 4 | AY.25 | 0.000024 |
ORF7a | 60 | S60S | agC | agT | 4 | 4 | AY.25 | 0.000024 |
ORF7a | 60 | S60del2 | aGC | a-- | 4 | 4 | AY.39 | 0.000099 |
ORF7a | 60 | S60S | agC | agT | 4 | 4 | AY.39 | 0.000099 |
ORF7a | 60 | S60del1 | agC | ag- | 4 | 4 | AY.39 | 0.000099 |
ORF7a | 60 | S60del1 | Agc | -gc | 4 | 4 | AY.42 | 0.000161 |
ORF7a | 60 | S60S | agC | agT | 4 | 4 | AY.5 | 0.000083 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | AY.5.3 | 0.00135 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | AY.53 | 0.00115 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | AY.66 | 0.004278 |
ORF7a | 60 | S60del2 | aGC | a-- | 3 | 4 | AY.7 | 0.000588 |
ORF7a | 60 | S60del2 | AGc | --c | 1 | 4 | AY.7 | 0.000196 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | AY.73 | 0.002661 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | AY.79 | 0.004843 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | AY.86 | 0.00332 |
ORF7a | 60 | S60S | agC | agT | 4 | 4 | AY.89 | 0.019608 |
ORF7a | 60 | S60T | aGc | aCc | 4 | 4 | AY.9 | 0.00027 |
ORF7a | 60 | S60I | aGc | aTc | 4 | 4 | B.1.1.120 | 0.133333 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | B.1.1.318 | 0.001207 |
ORF7a | 60 | S60N | aGc | aAc | 4 | 4 | B.1.1.320 | 0.072727 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF7a | 60 | S60N | aGc | aAc | 3 | 4 | B.1.351 | 0.000089 |
ORF7a | 60 | S60N | aGC | aAT | 1 | 4 | B.1.351 | 0.00003 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | B.1.351.2 | 0.00121 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | B.1.36 | 0.000584 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | B.1.466.2 | 0.001565 |
ORF7a | 60 | S60K | aGC | aAA | 4 | 4 | B.1.617.2 | 0.000015 |
ORF7a | 60 | S60X | AGC | TAA | 3 | 4 | B.1.617.2 | 0.000011 |
ORF7a | 60 | S60R | agC | agA | 2 | 4 | B.1.617.2 | 0.000008 |
ORF7a | 60 | S60R | agC | agG | 1 | 4 | B.1.617.2 | 0.000004 |
ORF7a | 60 | S60R | Agc | Cgc | 1 | 4 | B.1.617.2 | 0.000004 |
ORF7a | 60 | S60X | AgC | TgA | 1 | 4 | B.1.617.2 | 0.000004 |
ORF7a | 60 | S60del | AGC | --- | 4 | 4 | Q.3 | 0.00058 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | A.23.1 | 0.002113 |
ORF7a | 60 | S60D | AGC | GAT | 2 | 3 | All | 0 |
ORF7a | 60 | S60D | AGc | GAc | 1 | 3 | All | 0 |
ORF7a | 60 | S60R | Agc | Cgc | 1 | 3 | AY.1 | 0.000396 |
ORF7a | 60 | S60R | agC | agG | 1 | 3 | AY.1 | 0.000396 |
ORF7a | 60 | S60R | AgC | CgG | 1 | 3 | AY.1 | 0.000396 |
ORF7a | 60 | S60S | agC | agT | 3 | 3 | AY.118 | 0.000188 |
ORF7a | 60 | S60del1 | agC | ag- | 2 | 3 | AY.119 | 0.000071 |
ORF7a | 60 | S60del1 | Agc | -gc | 1 | 3 | AY.119 | 0.000035 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | AY.120.2 | 0.003856 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | AY.120.2.1 | 0.001495 |
ORF7a | 60 | S60S | agC | agT | 3 | 3 | AY.23 | 0.000209 |
ORF7a | 60 | S60N | aGc | aAc | 3 | 3 | AY.23 | 0.000209 |
ORF7a | 60 | S60I | aGc | aTc | 3 | 3 | AY.23.1 | 0.001252 |
ORF7a | 60 | S60R | agC | agA | 3 | 3 | AY.25 | 0.000018 |
ORF7a | 60 | S60C | Agc | Tgc | 3 | 3 | AY.25 | 0.000018 |
ORF7a | 60 | S60del1 | agC | ag- | 3 | 3 | AY.26 | 0.000085 |
ORF7a | 60 | S60I | aGc | aTc | 3 | 3 | AY.3 | 0.00003 |
ORF7a | 60 | S60N | aGc | aAc | 3 | 3 | AY.3 | 0.00003 |
ORF7a | 60 | S60G | Agc | Ggc | 3 | 3 | AY.3 | 0.00003 |
ORF7a | 60 | S60del2 | aGC | a-- | 3 | 3 | AY.3.1 | 0.000256 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | AY.4.3 | 0.002525 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | AY.40 | 0.002893 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | AY.41 | 0.000882 |
ORF7a | 60 | S60I | aGc | aTc | 3 | 3 | AY.42 | 0.000121 |
ORF7a | 60 | S60R | agC | agA | 3 | 3 | AY.44 | 0.000018 |
ORF7a | 60 | S60G | Agc | Ggc | 3 | 3 | AY.44 | 0.000018 |
ORF7a | 60 | S60del1 | agC | ag- | 2 | 3 | AY.47 | 0.000062 |
ORF7a | 60 | S60del1 | Agc | -gc | 1 | 3 | AY.47 | 0.000031 |
ORF7a | 60 | S60del2 | aGC | a-- | 3 | 3 | AY.52 | 0.002443 |
ORF7a | 60 | S60S | agC | agT | 3 | 3 | AY.59 | 0.001589 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | AY.64 | 0.001786 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | AY.69 | 0.00056 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | AY.88 | 0.002653 |
ORF7a | 60 | S60S | agC | agT | 3 | 3 | AY.9.2 | 0.00011 |
ORF7a | 60 | S60T | aGc | aCc | 3 | 3 | AY.98 | 0.000237 |
ORF7a | 60 | S60T | aGc | aCc | 3 | 3 | B.1 | 0.000027 |
ORF7a | 60 | S60Y | AGc | TAc | 3 | 3 | B.1 | 0.000027 |
ORF7a | 60 | S60R | agC | agA | 1 | 3 | B.1 | 0.000009 |
ORF7a | 60 | S60R | agC | agG | 1 | 3 | B.1 | 0.000009 |
ORF7a | 60 | S60R | Agc | Cgc | 1 | 3 | B.1 | 0.000009 |
ORF7a | 60 | S60I | aGc | aTc | 3 | 3 | B.1.1.1 | 0.00098 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | B.1.1.1 | 0.00098 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | B.1.1.118 | 0.030612 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | B.1.1.121 | 0.007282 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | B.1.1.25 | 0.001706 |
ORF7a | 60 | S60del2 | aGC | a-- | 3 | 3 | B.1.160 | 0.000094 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | B.1.160.16 | 0.002788 |
ORF7a | 60 | S60G | Agc | Ggc | 3 | 3 | B.1.177 | 0.00004 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | B.1.177.10 | 0.002634 |
ORF7a | 60 | S60del2 | aGC | a-- | 3 | 3 | B.1.177.12 | 0.000455 |
ORF7a | 60 | S60K | aGC | aAA | 3 | 3 | B.1.177.21 | 0.000229 |
ORF7a | 60 | S60I | aGC | aTA | 2 | 3 | B.1.177.21 | 0.000153 |
ORF7a | 60 | S60N | aGC | aAT | 2 | 3 | B.1.177.21 | 0.000153 |
ORF7a | 60 | S60I | aGc | aTc | 1 | 3 | B.1.177.21 | 0.000076 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 3 | B.1.177.21 | 0.000076 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | B.1.177.57 | 0.000843 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | B.1.177.6 | 0.00293 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | B.1.177.62 | 0.003576 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | B.1.177.81 | 0.000568 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | B.1.221 | 0.000213 |
ORF7a | 60 | S60N | aGc | aAc | 3 | 3 | B.1.306 | 0.017143 |
ORF7a | 60 | S60H | AGc | CAc | 2 | 3 | B.1.351 | 0.000059 |
ORF7a | 60 | S60P | AGC | CCT | 1 | 3 | B.1.351 | 0.00003 |
ORF7a | 60 | S60P | AGc | CCc | 1 | 3 | B.1.351 | 0.00003 |
ORF7a | 60 | S60H | AGC | CAT | 1 | 3 | B.1.351 | 0.00003 |
ORF7a | 60 | S60T | aGc | aCc | 1 | 3 | B.1.351 | 0.00003 |
ORF7a | 60 | S60P | AGC | CCA | 1 | 3 | B.1.351 | 0.00003 |
ORF7a | 60 | S60T | aGC | aCA | 1 | 3 | B.1.351 | 0.00003 |
ORF7a | 60 | S60T | aGC | aCT | 1 | 3 | B.1.351 | 0.00003 |
ORF7a | 60 | S60del2 | aGC | a-- | 3 | 3 | B.1.429 | 0.000071 |
ORF7a | 60 | S60del1 | Agc | -gc | 2 | 3 | B.1.526 | 0.000047 |
ORF7a | 60 | S60del1 | agC | ag- | 1 | 3 | B.1.526 | 0.000024 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | B.1.575 | 0.00091 |
ORF7a | 60 | S60G | Agc | Ggc | 3 | 3 | B.1.617.2 | 0.000011 |
ORF7a | 60 | S60Y | AGc | TAc | 3 | 3 | B.1.617.2 | 0.000011 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | B.1.621.1 | 0.001517 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | B.1.626 | 0.017143 |
ORF7a | 60 | S60S | agC | agT | 3 | 3 | P.1 | 0.000047 |
ORF7a | 60 | S60del | AGC | --- | 3 | 3 | P.1.16 | 0.001122 |
ORF7a | 60 | S60R | agC | agA | 2 | 2 | 0.111111 | |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | A.28 | 0.005291 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | AD.2 | 0.000438 |
ORF7a | 60 | S60W | AgC | TgG | 2 | 2 | All | 0 |
ORF7a | 60 | S60I | aGc | aTc | 2 | 2 | AY.100 | 0.000092 |
ORF7a | 60 | S60del2 | aGC | a-- | 2 | 2 | AY.102 | 0.000053 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | AY.11 | 0.002677 |
ORF7a | 60 | S60del2 | aGC | a-- | 2 | 2 | AY.111 | 0.000366 |
ORF7a | 60 | S60N | aGc | aAc | 2 | 2 | AY.119 | 0.000071 |
ORF7a | 60 | S60del2 | aGC | a-- | 2 | 2 | AY.119 | 0.000071 |
ORF7a | 60 | S60R | agC | agA | 2 | 2 | AY.16 | 0.000759 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | AY.16.1 | 0.00094 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | AY.2 | 0.000712 |
ORF7a | 60 | S60N | aGc | aAc | 2 | 2 | AY.20 | 0.000078 |
ORF7a | 60 | S60del2 | aGC | a-- | 2 | 2 | AY.23.1 | 0.000835 |
ORF7a | 60 | S60X | AGC | TAA | 2 | 2 | AY.25 | 0.000012 |
ORF7a | 60 | S60Y | AGc | TAc | 2 | 2 | AY.25 | 0.000012 |
ORF7a | 60 | S60L | AGC | TTA | 2 | 2 | AY.25 | 0.000012 |
ORF7a | 60 | S60F | AGc | TTc | 2 | 2 | AY.25 | 0.000012 |
ORF7a | 60 | S60D | AGc | GAc | 1 | 2 | AY.25 | 0.000006 |
ORF7a | 60 | S60A | AGC | GCA | 1 | 2 | AY.25 | 0.000006 |
ORF7a | 60 | S60A | AGc | GCc | 1 | 2 | AY.25 | 0.000006 |
ORF7a | 60 | S60T | aGC | aCA | 1 | 2 | AY.25 | 0.000006 |
ORF7a | 60 | S60T | aGc | aCc | 1 | 2 | AY.25 | 0.000006 |
ORF7a | 60 | S60D | AGC | GAT | 1 | 2 | AY.25 | 0.000006 |
ORF7a | 60 | S60del2 | AGc | --c | 1 | 2 | AY.26 | 0.000028 |
ORF7a | 60 | S60del2 | aGC | a-- | 1 | 2 | AY.26 | 0.000028 |
ORF7a | 60 | S60del1 | Agc | -gc | 2 | 2 | AY.29.1 | 0.000441 |
ORF7a | 60 | S60del1 | agC | ag- | 2 | 2 | AY.3 | 0.00002 |
ORF7a | 60 | S60S | agC | agT | 2 | 2 | AY.3 | 0.00002 |
ORF7a | 60 | S60S | agC | agT | 2 | 2 | AY.36 | 0.000296 |
ORF7a | 60 | S60R | agC | agA | 2 | 2 | AY.39 | 0.000049 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | AY.39.2 | 0.003082 |
ORF7a | 60 | S60R | agC | agA | 2 | 2 | AY.4 | 0.000003 |
ORF7a | 60 | S60del1 | agC | ag- | 2 | 2 | AY.4.2 | 0.000043 |
ORF7a | 60 | S60del2 | AGc | --c | 1 | 2 | AY.4.2 | 0.000022 |
ORF7a | 60 | S60del2 | aGC | a-- | 1 | 2 | AY.4.2 | 0.000022 |
ORF7a | 60 | S60del1 | agC | ag- | 1 | 2 | AY.43 | 0.000004 |
ORF7a | 60 | S60R | agC | agA | 1 | 2 | AY.43 | 0.000004 |
ORF7a | 60 | S60R | AgC | CgT | 1 | 2 | AY.43 | 0.000004 |
ORF7a | 60 | S60del1 | Agc | -gc | 1 | 2 | AY.43 | 0.000004 |
ORF7a | 60 | S60del1 | agC | ag- | 2 | 2 | AY.44 | 0.000012 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | AY.46.3 | 0.001867 |
ORF7a | 60 | S60N | aGc | aAc | 2 | 2 | AY.47 | 0.000062 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | AY.49 | 0.00639 |
ORF7a | 60 | S60I | aGc | aTc | 2 | 2 | AY.5.4 | 0.000553 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | AY.51 | 0.001818 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | AY.57 | 0.001312 |
ORF7a | 60 | S60S | agC | agT | 2 | 2 | AY.7.2 | 0.001119 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | AY.72 | 0.002721 |
ORF7a | 60 | S60S | agC | agT | 2 | 2 | AY.77 | 0.002255 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | AY.8 | 0.001212 |
ORF7a | 60 | S60S | agC | agT | 2 | 2 | B.1.1 | 0.000036 |
ORF7a | 60 | S60F | AGC | TTT | 1 | 2 | B.1.1 | 0.000018 |
ORF7a | 60 | S60F | AGc | TTc | 1 | 2 | B.1.1 | 0.000018 |
ORF7a | 60 | S60C | Agc | Tgc | 1 | 2 | B.1.1 | 0.000018 |
ORF7a | 60 | S60C | AgC | TgT | 1 | 2 | B.1.1 | 0.000018 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.1.10 | 0.00223 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.1.163 | 0.015267 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.1.170 | 0.002494 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.1.219 | 0.01 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.1.220 | 0.003717 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.1.303 | 0.005525 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.1.317 | 0.000823 |
ORF7a | 60 | S60T | aGc | aCc | 2 | 2 | B.1.1.318 | 0.000604 |
ORF7a | 60 | S60C | Agc | Tgc | 2 | 2 | B.1.1.33 | 0.000842 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.1.372 | 0.001377 |
ORF7a | 60 | S60del2 | aGC | a-- | 2 | 2 | B.1.1.519 | 0.000079 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.1.521 | 0.010695 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.139 | 0.001466 |
ORF7a | 60 | S60del2 | aGC | a-- | 2 | 2 | B.1.160.14 | 0.004237 |
ORF7a | 60 | S60S | agC | agT | 2 | 2 | B.1.160.23 | 0.009662 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.160.30 | 0.005952 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.177.12 | 0.000303 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.177.16 | 0.001329 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.177.43 | 0.002954 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.177.5 | 0.002484 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.177.55 | 0.004662 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.177.7 | 0.00033 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.177.86 | 0.000367 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.190 | 0.02 |
ORF7a | 60 | S60N | aGc | aAc | 2 | 2 | B.1.214 | 0.007326 |
ORF7a | 60 | S60C | Agc | Tgc | 2 | 2 | B.1.240 | 0.000431 |
ORF7a | 60 | S60del2 | aGC | a-- | 2 | 2 | B.1.243 | 0.000139 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.258.11 | 0.000793 |
ORF7a | 60 | S60N | aGc | aAc | 2 | 2 | B.1.258.17 | 0.000208 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.264 | 0.024691 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.311 | 0.000549 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.349 | 0.00143 |
ORF7a | 60 | S60S | AGC | TCA | 1 | 2 | B.1.351 | 0.00003 |
ORF7a | 60 | S60S | agC | agT | 1 | 2 | B.1.351 | 0.00003 |
ORF7a | 60 | S60I | aGC | aTT | 1 | 2 | B.1.351 | 0.00003 |
ORF7a | 60 | S60I | aGc | aTc | 1 | 2 | B.1.351 | 0.00003 |
ORF7a | 60 | S60I | aGc | aTc | 1 | 2 | B.1.36 | 0.000146 |
ORF7a | 60 | S60I | aGC | aTT | 1 | 2 | B.1.36 | 0.000146 |
ORF7a | 60 | S60I | aGC | aTT | 2 | 2 | B.1.36.1 | 0.002281 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.36.9 | 0.006431 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.369 | 0.00057 |
ORF7a | 60 | S60N | aGc | aAc | 2 | 2 | B.1.400 | 0.000858 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.401 | 0.016393 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.415.1 | 0.015152 |
ORF7a | 60 | S60S | agC | agT | 2 | 2 | B.1.429 | 0.000047 |
ORF7a | 60 | S60I | aGc | aTc | 2 | 2 | B.1.429 | 0.000047 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.470 | 0.002809 |
ORF7a | 60 | S60N | aGc | aAc | 2 | 2 | B.1.575 | 0.000607 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.576 | 0.001813 |
ORF7a | 60 | S60I | aGc | aTc | 2 | 2 | B.1.588 | 0.00182 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.609 | 0.000959 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.617.1 | 0.000258 |
ORF7a | 60 | S60F | AGc | TTc | 1 | 2 | B.1.617.2 | 0.000004 |
ORF7a | 60 | S60F | AGC | TTT | 1 | 2 | B.1.617.2 | 0.000004 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.617.3 | 0.00597 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | B.1.627 | 0.00404 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | C.36.3 | 0.001134 |
ORF7a | 60 | S60N | aGc | aAc | 2 | 2 | P.1 | 0.000032 |
ORF7a | 60 | S60del2 | aGC | a-- | 2 | 2 | P.1 | 0.000032 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | P.1.17.1 | 0.00175 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | P.1.4 | 0.001953 |
ORF7a | 60 | S60del | AGC | --- | 2 | 2 | P.1.7 | 0.000639 |
ORF7a | 60 | S60del2 | aGC | a-- | 2 | 2 | P.2 | 0.000373 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | A.1 | 0.000282 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | A.1 | 0.000282 |
ORF7a | 60 | S60G | Agc | Ggc | 1 | 1 | A.2 | 0.000662 |
ORF7a | 60 | S60I | aGc | aTc | 1 | 1 | A.2.4 | 0.003367 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | A.2.5 | 0.000499 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | A.2.5.3 | 0.010309 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | A.23 | 0.010526 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | AA.7 | 0.009174 |
ORF7a | 60 | S60T | aGc | aCc | 1 | 1 | AE.8 | 0.000489 |
ORF7a | 60 | S60E | AGC | GAA | 1 | 1 | All | 0 |
ORF7a | 60 | S60Q | AGC | CAA | 1 | 1 | All | 0 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | AU.3 | 0.00211 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | AY.100 | 0.000046 |
ORF7a | 60 | S60del1 | agC | ag- | 1 | 1 | AY.100 | 0.000046 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 1 | AY.100 | 0.000046 |
ORF7a | 60 | S60C | Agc | Tgc | 1 | 1 | AY.102 | 0.000027 |
ORF7a | 60 | S60I | aGc | aTc | 1 | 1 | AY.102 | 0.000027 |
ORF7a | 60 | S60T | aGC | aCT | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 60 | S60G | Agc | Ggc | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | AY.104 | 0.001984 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | AY.105 | 0.000643 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | AY.108 | 0.001103 |
ORF7a | 60 | S60del2 | aGC | a-- | 1 | 1 | AY.11 | 0.001339 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | AY.116 | 0.000287 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | AY.117 | 0.000085 |
ORF7a | 60 | S60del1 | agC | ag- | 1 | 1 | AY.117 | 0.000085 |
ORF7a | 60 | S60del2 | aGC | a-- | 1 | 1 | AY.117 | 0.000085 |
ORF7a | 60 | S60del2 | aGC | a-- | 1 | 1 | AY.12 | 0.000316 |
ORF7a | 60 | S60del2 | AGc | --c | 1 | 1 | AY.120 | 0.000037 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 1 | AY.121 | 0.000135 |
ORF7a | 60 | S60del2 | aGC | a-- | 1 | 1 | AY.121 | 0.000135 |
ORF7a | 60 | S60del2 | aGC | a-- | 1 | 1 | AY.13 | 0.000161 |
ORF7a | 60 | S60C | Agc | Tgc | 1 | 1 | AY.14 | 0.000088 |
ORF7a | 60 | S60C | Agc | Tgc | 1 | 1 | AY.20 | 0.000039 |
ORF7a | 60 | S60del1 | agC | ag- | 1 | 1 | AY.20 | 0.000039 |
ORF7a | 60 | S60del2 | AGc | --c | 1 | 1 | AY.20 | 0.000039 |
ORF7a | 60 | S60I | aGc | aTc | 1 | 1 | AY.23 | 0.00007 |
ORF7a | 60 | S60del1 | Agc | -gc | 1 | 1 | AY.23 | 0.00007 |
ORF7a | 60 | S60E | AGC | GAA | 1 | 1 | AY.25 | 0.000006 |
ORF7a | 60 | S60T | aGc | aCc | 1 | 1 | AY.26 | 0.000028 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 1 | AY.26 | 0.000028 |
ORF7a | 60 | S60A | AGC | GCT | 1 | 1 | AY.26 | 0.000028 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | AY.26 | 0.000028 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | AY.27 | 0.000065 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 60 | S60I | aGc | aTc | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 60 | S60del2 | aGC | a-- | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 60 | S60R | agC | agA | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 60 | S60I | aGc | aTc | 1 | 1 | AY.29.1 | 0.000221 |
ORF7a | 60 | S60T | aGc | aCc | 1 | 1 | AY.3 | 0.00001 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | AY.3.1 | 0.000085 |
ORF7a | 60 | S60R | agC | agA | 1 | 1 | AY.30 | 0.000396 |
ORF7a | 60 | S60del1 | AGC | -NN | 1 | 1 | AY.30 | 0.000396 |
ORF7a | 60 | S60R | agC | agA | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 60 | S60C | Agc | Tgc | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 60 | S60del2 | AGc | --c | 1 | 1 | AY.34.1 | 0.00051 |
ORF7a | 60 | S60del2 | aGC | a-- | 1 | 1 | AY.36 | 0.000148 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | AY.38 | 0.000499 |
ORF7a | 60 | S60I | aGc | aTc | 1 | 1 | AY.39 | 0.000025 |
ORF7a | 60 | S60T | aGc | aCc | 1 | 1 | AY.39 | 0.000025 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | AY.39.1 | 0.00004 |
ORF7a | 60 | S60del1 | Agc | -gc | 1 | 1 | AY.39.1 | 0.00004 |
ORF7a | 60 | S60T | aGc | aCc | 1 | 1 | AY.4 | 0.000002 |
ORF7a | 60 | S60H | AGc | CAc | 1 | 1 | AY.4 | 0.000002 |
ORF7a | 60 | S60P | AGC | CCA | 1 | 1 | AY.4 | 0.000002 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | AY.4.1 | 0.000737 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | AY.4.2 | 0.000022 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | AY.4.5 | 0.000107 |
ORF7a | 60 | S60Y | AGc | TAc | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 60 | S60C | Agc | Tgc | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 60 | S60D | AGC | GAT | 1 | 1 | AY.44 | 0.000006 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | AY.45 | 0.000122 |
ORF7a | 60 | S60del1 | agC | ag- | 1 | 1 | AY.46 | 0.000104 |
ORF7a | 60 | S60T | aGc | aCc | 1 | 1 | AY.46 | 0.000104 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | AY.46.2 | 0.000635 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | AY.46.4 | 0.000165 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 1 | AY.46.6 | 0.000072 |
ORF7a | 60 | S60C | Agc | Tgc | 1 | 1 | AY.46.6 | 0.000072 |
ORF7a | 60 | S60C | Agc | Tgc | 1 | 1 | AY.47 | 0.000031 |
ORF7a | 60 | S60del1 | Agc | -gc | 1 | 1 | AY.49 | 0.003195 |
ORF7a | 60 | S60I | aGc | aTc | 1 | 1 | AY.5 | 0.000021 |
ORF7a | 60 | S60C | Agc | Tgc | 1 | 1 | AY.5 | 0.000021 |
ORF7a | 60 | S60C | Agc | Tgc | 1 | 1 | AY.5.4 | 0.000277 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | AY.50 | 0.000799 |
ORF7a | 60 | S60del1 | Agc | -gc | 1 | 1 | AY.53 | 0.000288 |
ORF7a | 60 | S60del1 | agC | ag- | 1 | 1 | AY.54 | 0.000095 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 1 | AY.59 | 0.00053 |
ORF7a | 60 | S60I | aGc | aTc | 1 | 1 | AY.6 | 0.000041 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 1 | AY.61 | 0.000105 |
ORF7a | 60 | S60del2 | aGC | a-- | 1 | 1 | AY.61 | 0.000105 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | AY.63 | 0.000387 |
ORF7a | 60 | S60del2 | AGc | --c | 1 | 1 | AY.66 | 0.00107 |
ORF7a | 60 | S60C | Agc | Tgc | 1 | 1 | AY.69 | 0.000187 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 1 | AY.7 | 0.000196 |
ORF7a | 60 | S60del1 | agC | ag- | 1 | 1 | AY.7.1 | 0.000113 |
ORF7a | 60 | S60del1 | aGC | aA- | 1 | 1 | AY.7.2 | 0.000559 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 1 | AY.71 | 0.000475 |
ORF7a | 60 | S60del1 | agC | ag- | 1 | 1 | AY.71 | 0.000475 |
ORF7a | 60 | S60R | agC | agA | 1 | 1 | AY.73 | 0.000665 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 1 | AY.74 | 0.000116 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | AY.75 | 0.000056 |
ORF7a | 60 | S60R | agC | agA | 1 | 1 | AY.75 | 0.000056 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | AY.81 | 0.001992 |
ORF7a | 60 | S60del1 | agC | ag- | 1 | 1 | AY.82 | 0.001357 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | AY.85 | 0.000427 |
ORF7a | 60 | S60I | aGc | aTc | 1 | 1 | AY.88 | 0.000884 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | AY.89 | 0.004902 |
ORF7a | 60 | S60del2 | aGC | a-- | 1 | 1 | AY.9.1 | 0.000084 |
ORF7a | 60 | S60del1 | Agc | -gc | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 60 | S60del2 | aGC | a-- | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 60 | S60T | aGc | aCc | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | AY.94 | 0.000443 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | AY.98 | 0.000079 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 1 | AY.98 | 0.000079 |
ORF7a | 60 | S60I | aGc | aTc | 1 | 1 | AY.98.1 | 0.000048 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | AY.98.1 | 0.000048 |
ORF7a | 60 | S60del1 | agC | ag- | 1 | 1 | AY.99.2 | 0.000092 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B | 0.000128 |
ORF7a | 60 | S60del1 | Agc | -gc | 1 | 1 | B.1 | 0.000009 |
ORF7a | 60 | S60K | aGC | aAA | 1 | 1 | B.1 | 0.000009 |
ORF7a | 60 | S60G | Agc | Ggc | 1 | 1 | B.1 | 0.000009 |
ORF7a | 60 | S60L | AGc | CTc | 1 | 1 | B.1 | 0.000009 |
ORF7a | 60 | S60del2 | AGc | --c | 1 | 1 | B.1 | 0.000009 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 1 | B.1.1 | 0.000018 |
ORF7a | 60 | S60G | Agc | Ggc | 1 | 1 | B.1.1 | 0.000018 |
ORF7a | 60 | S60T | aGc | aCc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.123 | 0.017857 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 1 | B.1.1.135 | 0.004695 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.135 | 0.004695 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.141 | 0.002012 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.157 | 0.000913 |
ORF7a | 60 | S60G | Agc | Ggc | 1 | 1 | B.1.1.171 | 0.003676 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.174 | 0.003378 |
ORF7a | 60 | S60I | aGC | aTT | 1 | 1 | B.1.1.189 | 0.001513 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.192 | 0.002309 |
ORF7a | 60 | S60del1 | AGC | -NN | 1 | 1 | B.1.1.192 | 0.002309 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.194 | 0.00495 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.205 | 0.003717 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.209 | 0.008929 |
ORF7a | 60 | S60I | aGc | aTc | 1 | 1 | B.1.1.214 | 0.000055 |
ORF7a | 60 | S60del2 | aGC | a-- | 1 | 1 | B.1.1.222 | 0.000204 |
ORF7a | 60 | S60S | AGc | TCc | 1 | 1 | B.1.1.225 | 0.007194 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.240 | 0.004695 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.241 | 0.00207 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 1 | B.1.1.25 | 0.000569 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.265 | 0.003155 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | B.1.1.265 | 0.003155 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.277 | 0.000759 |
ORF7a | 60 | S60I | aGC | aTT | 1 | 1 | B.1.1.282 | 0.011628 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.289 | 0.002083 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.298 | 0.000862 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.301 | 0.001179 |
ORF7a | 60 | S60I | aGC | aTT | 1 | 1 | B.1.1.305 | 0.003861 |
ORF7a | 60 | S60del1 | aGc | a-c | 1 | 1 | B.1.1.306 | 0.000438 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.329 | 0.003846 |
ORF7a | 60 | S60del2 | aGC | a-- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF7a | 60 | S60I | aGc | aTc | 1 | 1 | B.1.1.33 | 0.000421 |
ORF7a | 60 | S60del2 | aGC | a-- | 1 | 1 | B.1.1.337 | 0.003597 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.366 | 0.015873 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.368 | 0.003086 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.376 | 0.005952 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.432 | 0.001266 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.434 | 0.000349 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.437 | 0.010417 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.486 | 0.001577 |
ORF7a | 60 | S60R | agC | agA | 1 | 1 | B.1.1.50 | 0.000679 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.50 | 0.000679 |
ORF7a | 60 | S60I | aGc | aTc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF7a | 60 | S60T | aGc | aCc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.525 | 0.005464 |
ORF7a | 60 | S60F | AGc | TTc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 60 | S60W | AgC | TgG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 60 | S60Y | AGC | TAT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 60 | S60H | AGc | CAc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 60 | S60A | AGC | GCT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.1.83 | 0.00271 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | B.1.111 | 0.001175 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.115 | 0.021739 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.128 | 0.000635 |
ORF7a | 60 | S60I | aGc | aTc | 1 | 1 | B.1.13 | 0.002375 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF7a | 60 | S60I | aGc | aTc | 1 | 1 | B.1.146 | 0.004237 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 1 | B.1.160 | 0.000031 |
ORF7a | 60 | S60T | aGC | aCA | 1 | 1 | B.1.160 | 0.000031 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | B.1.160 | 0.000031 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.160.26 | 0.002421 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.160.29 | 0.004219 |
ORF7a | 60 | S60R | Agc | Cgc | 1 | 1 | B.1.160.32 | 0.004292 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.160.7 | 0.002079 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 60 | S60I | aGC | aTT | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 60 | S60del2 | aGC | a-- | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 60 | S60V | AGc | GTc | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7a | 60 | S60W | AgC | TgG | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7a | 60 | S60L | AGC | TTA | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7a | 60 | S60V | AGc | GTc | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 1 | B.1.177.53 | 0.002392 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.177.53 | 0.002392 |
ORF7a | 60 | S60Y | AGc | TAc | 1 | 1 | B.1.177.63 | 0.002703 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.177.8 | 0.000752 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.177.80 | 0.001912 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF7a | 60 | S60I | aGc | aTc | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 60 | S60R | agC | agA | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.213 | 0.014925 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 1 | B.1.221 | 0.000071 |
ORF7a | 60 | S60G | Agc | Ggc | 1 | 1 | B.1.232 | 0.000537 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.236 | 0.002053 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.240 | 0.000216 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 1 | B.1.240 | 0.000216 |
ORF7a | 60 | S60I | aGC | aTT | 1 | 1 | B.1.242 | 0.018868 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 1 | B.1.243 | 0.00007 |
ORF7a | 60 | S60I | aGc | aTc | 1 | 1 | B.1.258 | 0.000067 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF7a | 60 | S60K | aGC | aAA | 1 | 1 | B.1.258.9 | 0.005 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.265 | 0.001271 |
ORF7a | 60 | S60I | aGc | aTc | 1 | 1 | B.1.279 | 0.000514 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 1 | B.1.293 | 0.0125 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.320 | 0.001245 |
ORF7a | 60 | S60Y | AGc | TAc | 1 | 1 | B.1.333 | 0.010526 |
ORF7a | 60 | S60Q | AGC | CAA | 1 | 1 | B.1.351 | 0.00003 |
ORF7a | 60 | S60G | Agc | Ggc | 1 | 1 | B.1.351 | 0.00003 |
ORF7a | 60 | S60A | AGC | GCT | 1 | 1 | B.1.351 | 0.00003 |
ORF7a | 60 | S60K | aGC | aAA | 1 | 1 | B.1.351 | 0.00003 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.351.3 | 0.000876 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | B.1.36 | 0.000146 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.36.19 | 0.009259 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.36.35 | 0.002604 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.36.38 | 0.001642 |
ORF7a | 60 | S60G | Agc | Ggc | 1 | 1 | B.1.36.8 | 0.001 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.361 | 0.001289 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.371 | 0.001122 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.389 | 0.001002 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 1 | B.1.390 | 0.010638 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | B.1.399 | 0.001934 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 1 | B.1.40 | 0.019608 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.404 | 0.001302 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.406 | 0.006061 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | B.1.427 | 0.00005 |
ORF7a | 60 | S60R | agC | agA | 1 | 1 | B.1.429 | 0.000024 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 1 | B.1.429 | 0.000024 |
ORF7a | 60 | S60I | aGC | aTT | 1 | 1 | B.1.438 | 0.006536 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.438.1 | 0.000107 |
ORF7a | 60 | S60Y | AGc | TAc | 1 | 1 | B.1.446 | 0.02 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.459 | 0.004082 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | B.1.459 | 0.004082 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF7a | 60 | S60I | aGC | aTT | 1 | 1 | B.1.469 | 0.00361 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.497 | 0.000315 |
ORF7a | 60 | S60G | Agc | Ggc | 1 | 1 | B.1.497 | 0.000315 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.499 | 0.00105 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.509 | 0.000866 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.517 | 0.000427 |
ORF7a | 60 | S60I | aGC | aTT | 1 | 1 | B.1.525 | 0.000113 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | B.1.526 | 0.000024 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 1 | B.1.526 | 0.000024 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.534 | 0.0125 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.535 | 0.028571 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.560 | 0.00463 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 1 | B.1.561 | 0.000397 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.564 | 0.000426 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.565 | 0.00081 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.568 | 0.001111 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 1 | B.1.582 | 0.000491 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.582 | 0.000491 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.588 | 0.00091 |
ORF7a | 60 | S60R | agC | agA | 1 | 1 | B.1.588 | 0.00091 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 1 | B.1.596 | 0.000087 |
ORF7a | 60 | S60del2 | AGc | --c | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 60 | S60G | Agc | Ggc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 60 | S60L | AGc | CTc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 60 | S60H | AGc | CAc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 60 | S60I | aGc | aTc | 1 | 1 | B.1.621 | 0.000089 |
ORF7a | 60 | S60del2 | aGC | a-- | 1 | 1 | B.1.621 | 0.000089 |
ORF7a | 60 | S60R | agC | agA | 1 | 1 | B.1.621.1 | 0.000506 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.623 | 0.000536 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 1 | B.1.625 | 0.002353 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF7a | 60 | S60del1 | AGc | -Ac | 1 | 1 | B.1.637 | 0.000073 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.1.9.1 | 0.032258 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.11 | 0.005128 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.3 | 0.000831 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.39 | 0.002331 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | B.4 | 0.002208 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | B.40 | 0.000364 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | B.40 | 0.000364 |
ORF7a | 60 | S60G | Agc | Ggc | 1 | 1 | B.6.6 | 0.000889 |
ORF7a | 60 | S60R | agC | agA | 1 | 1 | B.6.6 | 0.000889 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | C.28 | 0.04 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | C.30 | 0.001727 |
ORF7a | 60 | S60G | Agc | Ggc | 1 | 1 | C.36.1 | 0.004149 |
ORF7a | 60 | S60I | aGc | aTc | 1 | 1 | C.37 | 0.000116 |
ORF7a | 60 | S60del2 | aGC | a-- | 1 | 1 | D.2 | 0.000075 |
ORF7a | 60 | S60C | Agc | Tgc | 1 | 1 | D.2 | 0.000075 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | K.3 | 0.006173 |
ORF7a | 60 | S60I | aGc | aTc | 1 | 1 | P.1 | 0.000016 |
ORF7a | 60 | S60del1 | agC | ag- | 1 | 1 | P.1 | 0.000016 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | P.1.10 | 0.000269 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | P.1.12 | 0.000484 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | P.1.13 | 0.000898 |
ORF7a | 60 | S60S | agC | agT | 1 | 1 | P.1.14 | 0.000048 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | P.1.17 | 0.000162 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | P.1.3 | 0.034483 |
ORF7a | 60 | S60K | aGC | aAA | 1 | 1 | P.2 | 0.000187 |
ORF7a | 60 | S60I | aGc | aTc | 1 | 1 | Q.1 | 0.000126 |
ORF7a | 60 | S60N | aGc | aAc | 1 | 1 | Q.3 | 0.000145 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | Q.4 | 0.000455 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | Q.7 | 0.001111 |
ORF7a | 60 | S60del | AGC | --- | 1 | 1 | Z.1 | 0.00289 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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