CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 6 | F6del | del | TTC | --- | 6465 | 6465 | 1 | 27409-27411 | |
ORF7a | 6 | F6L | nonsyn | Ttc | Ctc | 4036 | 3640 | 0.901883 | 27409-27411 | |
ORF7a | 6 | F6L | nonsyn | ttC | ttA | 4036 | 389 | 0.0963826 | 27409-27411 | |
ORF7a | 6 | F6L | nonsyn | ttC | ttG | 4036 | 4 | 0.00099108 | 27409-27411 | |
ORF7a | 6 | F6L | nonsyn | TtC | CtA | 4036 | 3 | 0.00074331 | 27409-27411 | |
ORF7a | 6 | F6S | nonsyn | tTc | tCc | 280 | 275 | 0.982143 | 27409-27411 | |
ORF7a | 6 | F6S | nonsyn | tTC | tCT | 280 | 4 | 0.0142857 | 27409-27411 | |
ORF7a | 6 | F6S | nonsyn | tTC | tCA | 280 | 1 | 0.00357143 | 27409-27411 | |
ORF7a | 6 | F6F | syn | ttC | ttT | 205 | 205 | 1 | 27409-27411 | |
ORF7a | 6 | F6I | nonsyn | Ttc | Atc | 202 | 201 | 0.995049 | 27409-27411 | |
ORF7a | 6 | F6I | nonsyn | TtC | AtA | 202 | 1 | 0.00495049 | 27409-27411 | |
ORF7a | 6 | F6C | nonsyn | tTc | tGc | 102 | 102 | 1 | 27409-27411 | |
ORF7a | 6 | F6Q | nonsyn | TTC | CAA | 60 | 60 | 1 | 27409-27411 | |
ORF7a | 6 | F6Y | nonsyn | tTc | tAc | 52 | 51 | 0.980769 | 27409-27411 | |
ORF7a | 6 | F6Y | nonsyn | tTC | tAT | 52 | 1 | 0.0192308 | 27409-27411 | |
ORF7a | 6 | F6V | nonsyn | Ttc | Gtc | 46 | 45 | 0.978261 | 27409-27411 | |
ORF7a | 6 | F6V | nonsyn | TtC | GtT | 46 | 1 | 0.0217391 | 27409-27411 | |
ORF7a | 6 | F6del1 | del | ttC | tt- | 28 | 28 | 1 | 27409-27411 | |
ORF7a | 6 | F6del2 | del | tTC | t-- | 12 | 7 | 0.583333 | 27409-27411 | |
ORF7a | 6 | F6del2 | del | TTC | --A | 12 | 2 | 0.166667 | 27409-27411 | |
ORF7a | 6 | F6del2 | del | TTc | --c | 12 | 2 | 0.166667 | 27409-27411 | |
ORF7a | 6 | F6del2 | del | TTC | --N | 12 | 1 | 0.0833333 | 27409-27411 | |
ORF7a | 6 | F6X | nonsyn | tTC | tAA | 3 | 2 | 0.666667 | 27409-27411 | |
ORF7a | 6 | F6X | nonsyn | tTC | tAG | 3 | 1 | 0.333333 | 27409-27411 | |
ORF7a | 6 | F6A | nonsyn | TTc | GCc | 2 | 1 | 0.5 | 27409-27411 | |
ORF7a | 6 | F6A | nonsyn | TTC | GCT | 2 | 1 | 0.5 | 27409-27411 | |
ORF7a | 6 | F6W | nonsyn | tTC | tGG | 1 | 1 | 1 | 27409-27411 | |
ORF7a | 6 | F6H | nonsyn | TTC | CAT | 1 | 1 | 1 | 27409-27411 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 6 | F6del | TTC | --- | 6465 | 6465 | All | 0.001237 |
ORF7a | 6 | F6del | TTC | --- | 5811 | 5811 | B.1.1.7 | 0.005202 |
ORF7a | 6 | F6L | Ttc | Ctc | 3640 | 4036 | All | 0.000696 |
ORF7a | 6 | F6L | ttC | ttA | 389 | 4036 | All | 0.000074 |
ORF7a | 6 | F6L | ttC | ttG | 4 | 4036 | All | 0.000001 |
ORF7a | 6 | F6L | TtC | CtA | 3 | 4036 | All | 0.000001 |
ORF7a | 6 | F6L | Ttc | Ctc | 2049 | 2052 | AY.43 | 0.009078 |
ORF7a | 6 | F6L | ttC | ttA | 3 | 2052 | AY.43 | 0.000013 |
ORF7a | 6 | F6L | Ttc | Ctc | 1118 | 1118 | B.1.160 | 0.034868 |
ORF7a | 6 | F6L | ttC | ttA | 304 | 307 | B.1.525 | 0.034401 |
ORF7a | 6 | F6L | Ttc | Ctc | 3 | 307 | B.1.525 | 0.000339 |
ORF7a | 6 | F6S | tTc | tCc | 275 | 280 | All | 0.000053 |
ORF7a | 6 | F6S | tTC | tCT | 4 | 280 | All | 0.000001 |
ORF7a | 6 | F6S | tTC | tCA | 1 | 280 | All | 0 |
ORF7a | 6 | F6L | Ttc | Ctc | 207 | 207 | B.1.160.23 | 1 |
ORF7a | 6 | F6F | ttC | ttT | 205 | 205 | All | 0.000039 |
ORF7a | 6 | F6I | Ttc | Atc | 201 | 202 | All | 0.000038 |
ORF7a | 6 | F6I | TtC | AtA | 1 | 202 | All | 0 |
ORF7a | 6 | F6del | TTC | --- | 179 | 179 | B.1.177.21 | 0.013688 |
ORF7a | 6 | F6del | TTC | --- | 136 | 136 | AY.4 | 0.000212 |
ORF7a | 6 | F6S | tTc | tCc | 106 | 106 | AZ.6 | 0.890756 |
ORF7a | 6 | F6C | tTc | tGc | 102 | 102 | All | 0.00002 |
ORF7a | 6 | F6L | Ttc | Ctc | 76 | 82 | B.1.1.7 | 0.000068 |
ORF7a | 6 | F6L | ttC | ttA | 6 | 82 | B.1.1.7 | 0.000005 |
ORF7a | 6 | F6C | tTc | tGc | 68 | 68 | B.1.1.7 | 0.000061 |
ORF7a | 6 | F6Q | TTC | CAA | 60 | 60 | All | 0.000011 |
ORF7a | 6 | F6Q | TTC | CAA | 57 | 57 | AY.29 | 0.000899 |
ORF7a | 6 | F6Y | tTc | tAc | 51 | 52 | All | 0.00001 |
ORF7a | 6 | F6Y | tTC | tAT | 1 | 52 | All | 0 |
ORF7a | 6 | F6S | tTc | tCc | 52 | 52 | B.1.1.7 | 0.000047 |
ORF7a | 6 | F6I | Ttc | Atc | 50 | 50 | B.1.429 | 0.001176 |
ORF7a | 6 | F6L | Ttc | Ctc | 44 | 48 | AY.103 | 0.000273 |
ORF7a | 6 | F6L | ttC | ttA | 4 | 48 | AY.103 | 0.000025 |
ORF7a | 6 | F6V | Ttc | Gtc | 45 | 46 | All | 0.000009 |
ORF7a | 6 | F6V | TtC | GtT | 1 | 46 | All | 0 |
ORF7a | 6 | F6L | Ttc | Ctc | 34 | 41 | AY.4 | 0.000053 |
ORF7a | 6 | F6L | ttC | ttA | 7 | 41 | AY.4 | 0.000011 |
ORF7a | 6 | F6I | Ttc | Atc | 38 | 38 | AY.85 | 0.016232 |
ORF7a | 6 | F6F | ttC | ttT | 29 | 29 | B.1.1.7 | 0.000026 |
ORF7a | 6 | F6del1 | ttC | tt- | 28 | 28 | All | 0.000005 |
ORF7a | 6 | F6I | Ttc | Atc | 28 | 28 | B.1.351 | 0.000832 |
ORF7a | 6 | F6F | ttC | ttT | 26 | 26 | B.1.617.1 | 0.003353 |
ORF7a | 6 | F6Y | tTc | tAc | 23 | 23 | AY.103 | 0.000143 |
ORF7a | 6 | F6F | ttC | ttT | 23 | 23 | AY.39.1.1 | 0.016667 |
ORF7a | 6 | F6del | TTC | --- | 21 | 21 | AY.29 | 0.000331 |
ORF7a | 6 | F6del | TTC | --- | 18 | 18 | AY.3 | 0.000179 |
ORF7a | 6 | F6del | TTC | --- | 18 | 18 | AY.43 | 0.00008 |
ORF7a | 6 | F6del1 | ttC | tt- | 17 | 17 | AY.39.1.1 | 0.012319 |
ORF7a | 6 | F6F | ttC | ttT | 17 | 17 | AY.4 | 0.000026 |
ORF7a | 6 | F6V | Ttc | Gtc | 17 | 17 | B.1.1.7 | 0.000015 |
ORF7a | 6 | F6S | tTc | tCc | 17 | 17 | B.1.243 | 0.001183 |
ORF7a | 6 | F6L | ttC | ttA | 9 | 17 | B.1.617.2 | 0.000034 |
ORF7a | 6 | F6L | Ttc | Ctc | 8 | 17 | B.1.617.2 | 0.00003 |
ORF7a | 6 | F6del | TTC | --- | 16 | 16 | AY.25 | 0.000096 |
ORF7a | 6 | F6del | TTC | --- | 16 | 16 | B.1.617.2 | 0.00006 |
ORF7a | 6 | F6del | TTC | --- | 14 | 14 | AY.103 | 0.000087 |
ORF7a | 6 | F6del | TTC | --- | 14 | 14 | AY.44 | 0.000085 |
ORF7a | 6 | F6del | TTC | --- | 14 | 14 | B.1 | 0.000128 |
ORF7a | 6 | F6I | Ttc | Atc | 13 | 13 | P.1 | 0.000205 |
ORF7a | 6 | F6Y | tTc | tAc | 13 | 13 | R.1 | 0.00117 |
ORF7a | 6 | F6del2 | tTC | t-- | 7 | 12 | All | 0.000001 |
ORF7a | 6 | F6del2 | TTc | --c | 2 | 12 | All | 0 |
ORF7a | 6 | F6del2 | TTC | --A | 2 | 12 | All | 0 |
ORF7a | 6 | F6del2 | TTC | --N | 1 | 12 | All | 0 |
ORF7a | 6 | F6I | Ttc | Atc | 12 | 12 | AY.30 | 0.004749 |
ORF7a | 6 | F6del | TTC | --- | 12 | 12 | AY.39 | 0.000297 |
ORF7a | 6 | F6L | Ttc | Ctc | 7 | 12 | B.1 | 0.000064 |
ORF7a | 6 | F6L | ttC | ttA | 4 | 12 | B.1 | 0.000037 |
ORF7a | 6 | F6L | ttC | ttG | 1 | 12 | B.1 | 0.000009 |
ORF7a | 6 | F6F | ttC | ttT | 11 | 11 | B.1.617.2 | 0.000041 |
ORF7a | 6 | F6S | tTc | tCc | 11 | 11 | P.4 | 0.041825 |
ORF7a | 6 | F6S | tTc | tCc | 10 | 10 | AY.43 | 0.000044 |
ORF7a | 6 | F6del2 | tTC | t-- | 7 | 10 | B.1.1.7 | 0.000006 |
ORF7a | 6 | F6del2 | TTC | --A | 2 | 10 | B.1.1.7 | 0.000002 |
ORF7a | 6 | F6del2 | TTc | --c | 1 | 10 | B.1.1.7 | 0.000001 |
ORF7a | 6 | F6S | tTc | tCc | 10 | 10 | B.1.160 | 0.000312 |
ORF7a | 6 | F6F | ttC | ttT | 10 | 10 | B.1.2 | 0.000088 |
ORF7a | 6 | F6L | Ttc | Ctc | 7 | 10 | B.1.2 | 0.000062 |
ORF7a | 6 | F6L | ttC | ttA | 2 | 10 | B.1.2 | 0.000018 |
ORF7a | 6 | F6L | ttC | ttG | 1 | 10 | B.1.2 | 0.000009 |
ORF7a | 6 | F6del | TTC | --- | 9 | 9 | B.1.1.284 | 0.000967 |
ORF7a | 6 | F6C | tTc | tGc | 9 | 9 | B.1.221 | 0.000639 |
ORF7a | 6 | F6del | TTC | --- | 9 | 9 | C.8 | 0.040179 |
ORF7a | 6 | F6S | tTc | tCc | 8 | 8 | AY.4 | 0.000012 |
ORF7a | 6 | F6I | Ttc | Atc | 8 | 8 | B.1.1.7 | 0.000007 |
ORF7a | 6 | F6S | tTc | tCc | 8 | 8 | B.1.177 | 0.000105 |
ORF7a | 6 | F6L | Ttc | Ctc | 8 | 8 | B.1.427 | 0.000404 |
ORF7a | 6 | F6L | Ttc | Ctc | 8 | 8 | P.1 | 0.000126 |
ORF7a | 6 | F6del | TTC | --- | 7 | 7 | AY.118 | 0.000439 |
ORF7a | 6 | F6L | Ttc | Ctc | 7 | 7 | AY.120 | 0.00026 |
ORF7a | 6 | F6L | ttC | ttA | 4 | 7 | AY.25 | 0.000024 |
ORF7a | 6 | F6L | Ttc | Ctc | 3 | 7 | AY.25 | 0.000018 |
ORF7a | 6 | F6F | ttC | ttT | 7 | 7 | AY.46 | 0.000729 |
ORF7a | 6 | F6del | TTC | --- | 7 | 7 | B.1.1.214 | 0.000388 |
ORF7a | 6 | F6F | ttC | ttT | 7 | 7 | B.1.1.216 | 0.006233 |
ORF7a | 6 | F6del | TTC | --- | 7 | 7 | B.1.177 | 0.000092 |
ORF7a | 6 | F6V | Ttc | Gtc | 7 | 7 | B.1.2 | 0.000062 |
ORF7a | 6 | F6L | ttC | ttA | 7 | 7 | B.1.241 | 0.005682 |
ORF7a | 6 | F6I | Ttc | Atc | 6 | 7 | B.1.617.2 | 0.000023 |
ORF7a | 6 | F6I | TtC | AtA | 1 | 7 | B.1.617.2 | 0.000004 |
ORF7a | 6 | F6del | TTC | --- | 7 | 7 | C.37 | 0.000812 |
ORF7a | 6 | F6del | TTC | --- | 7 | 7 | P.1 | 0.00011 |
ORF7a | 6 | F6I | Ttc | Atc | 6 | 6 | AY.39 | 0.000148 |
ORF7a | 6 | F6V | Ttc | Gtc | 6 | 6 | AY.4 | 0.000009 |
ORF7a | 6 | F6F | ttC | ttT | 6 | 6 | AY.44 | 0.000037 |
ORF7a | 6 | F6del | TTC | --- | 6 | 6 | AY.47 | 0.000187 |
ORF7a | 6 | F6C | tTc | tGc | 6 | 6 | B.1.1.519 | 0.000238 |
ORF7a | 6 | F6del | TTC | --- | 6 | 6 | B.1.2 | 0.000053 |
ORF7a | 6 | F6del | TTC | --- | 6 | 6 | B.1.526 | 0.000141 |
ORF7a | 6 | F6L | ttC | ttA | 5 | 5 | AY.117 | 0.000423 |
ORF7a | 6 | F6del | TTC | --- | 5 | 5 | AY.26 | 0.000142 |
ORF7a | 6 | F6L | ttC | ttA | 3 | 5 | AY.44 | 0.000018 |
ORF7a | 6 | F6L | Ttc | Ctc | 2 | 5 | AY.44 | 0.000012 |
ORF7a | 6 | F6S | tTc | tCc | 5 | 5 | AY.45 | 0.000608 |
ORF7a | 6 | F6F | ttC | ttT | 5 | 5 | B.1 | 0.000046 |
ORF7a | 6 | F6L | Ttc | Ctc | 5 | 5 | B.1.160.30 | 0.014881 |
ORF7a | 6 | F6L | ttC | ttA | 5 | 5 | B.1.177 | 0.000066 |
ORF7a | 6 | F6del | TTC | --- | 5 | 5 | B.1.177.44 | 0.002595 |
ORF7a | 6 | F6L | ttC | ttA | 5 | 5 | B.1.177.60 | 0.001092 |
ORF7a | 6 | F6Y | tTc | tAc | 5 | 5 | B.1.617.2 | 0.000019 |
ORF7a | 6 | F6del | TTC | --- | 5 | 5 | Q.8 | 0.000825 |
ORF7a | 6 | F6L | TtC | CtA | 2 | 4 | 0.111111 | |
ORF7a | 6 | F6L | ttC | ttA | 2 | 4 | 0.111111 | |
ORF7a | 6 | F6del | TTC | --- | 4 | 4 | AY.106 | 0.00134 |
ORF7a | 6 | F6L | Ttc | Ctc | 4 | 4 | AY.29 | 0.000063 |
ORF7a | 6 | F6I | Ttc | Atc | 4 | 4 | AY.39.1 | 0.000158 |
ORF7a | 6 | F6S | tTc | tCc | 4 | 4 | AY.42 | 0.000161 |
ORF7a | 6 | F6I | Ttc | Atc | 4 | 4 | AY.43 | 0.000018 |
ORF7a | 6 | F6I | Ttc | Atc | 4 | 4 | AY.62 | 0.001743 |
ORF7a | 6 | F6del | TTC | --- | 4 | 4 | AY.98.1 | 0.000194 |
ORF7a | 6 | F6L | Ttc | Ctc | 4 | 4 | B.1.1 | 0.000073 |
ORF7a | 6 | F6F | ttC | ttT | 4 | 4 | B.1.1.519 | 0.000159 |
ORF7a | 6 | F6del1 | ttC | tt- | 4 | 4 | B.1.1.7 | 0.000004 |
ORF7a | 6 | F6L | Ttc | Ctc | 4 | 4 | B.1.160.15 | 0.019802 |
ORF7a | 6 | F6del1 | ttC | tt- | 4 | 4 | B.1.2 | 0.000035 |
ORF7a | 6 | F6del | TTC | --- | 4 | 4 | B.1.234 | 0.000528 |
ORF7a | 6 | F6L | ttC | ttA | 3 | 4 | B.1.36 | 0.000438 |
ORF7a | 6 | F6L | Ttc | Ctc | 1 | 4 | B.1.36 | 0.000146 |
ORF7a | 6 | F6del | TTC | --- | 4 | 4 | B.1.429 | 0.000094 |
ORF7a | 6 | F6F | ttC | ttT | 4 | 4 | B.1.429 | 0.000094 |
ORF7a | 6 | F6F | ttC | ttT | 4 | 4 | B.1.575 | 0.001214 |
ORF7a | 6 | F6V | Ttc | Gtc | 4 | 4 | B.1.617.2 | 0.000015 |
ORF7a | 6 | F6S | tTc | tCc | 4 | 4 | B.1.617.2 | 0.000015 |
ORF7a | 6 | F6del | TTC | --- | 4 | 4 | P.1.16 | 0.001496 |
ORF7a | 6 | F6X | tTC | tAA | 2 | 3 | All | 0 |
ORF7a | 6 | F6X | tTC | tAG | 1 | 3 | All | 0 |
ORF7a | 6 | F6I | Ttc | Atc | 3 | 3 | AY.101 | 0.001471 |
ORF7a | 6 | F6F | ttC | ttT | 3 | 3 | AY.3 | 0.00003 |
ORF7a | 6 | F6Y | tTc | tAc | 3 | 3 | AY.4 | 0.000005 |
ORF7a | 6 | F6F | ttC | ttT | 3 | 3 | AY.43 | 0.000013 |
ORF7a | 6 | F6I | Ttc | Atc | 3 | 3 | AY.44 | 0.000018 |
ORF7a | 6 | F6S | tTc | tCc | 2 | 3 | AY.44 | 0.000012 |
ORF7a | 6 | F6S | tTC | tCT | 1 | 3 | AY.44 | 0.000006 |
ORF7a | 6 | F6L | Ttc | Ctc | 3 | 3 | AY.47 | 0.000093 |
ORF7a | 6 | F6L | Ttc | Ctc | 2 | 3 | AY.75 | 0.000112 |
ORF7a | 6 | F6L | ttC | ttG | 1 | 3 | AY.75 | 0.000056 |
ORF7a | 6 | F6del | TTC | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF7a | 6 | F6F | ttC | ttT | 3 | 3 | B.1.1 | 0.000054 |
ORF7a | 6 | F6V | Ttc | Gtc | 3 | 3 | B.1.1.229 | 0.017241 |
ORF7a | 6 | F6L | Ttc | Ctc | 3 | 3 | B.1.221 | 0.000213 |
ORF7a | 6 | F6L | ttC | ttA | 3 | 3 | B.1.349 | 0.002144 |
ORF7a | 6 | F6del | TTC | --- | 3 | 3 | B.1.351 | 0.000089 |
ORF7a | 6 | F6S | tTc | tCc | 2 | 3 | B.1.526 | 0.000047 |
ORF7a | 6 | F6S | tTC | tCT | 1 | 3 | B.1.526 | 0.000024 |
ORF7a | 6 | F6S | tTc | tCc | 3 | 3 | B.1.595 | 0.000783 |
ORF7a | 6 | F6S | tTc | tCc | 3 | 3 | B.1.621 | 0.000266 |
ORF7a | 6 | F6del | TTC | --- | 3 | 3 | B.1.626 | 0.017143 |
ORF7a | 6 | F6I | Ttc | Atc | 3 | 3 | P.2 | 0.00056 |
ORF7a | 6 | F6X | tTC | tAA | 2 | 2 | 0.111111 | |
ORF7a | 6 | F6F | ttC | ttT | 2 | 2 | A.1 | 0.000564 |
ORF7a | 6 | F6del | TTC | --- | 2 | 2 | A.28 | 0.005291 |
ORF7a | 6 | F6A | TTc | GCc | 1 | 2 | All | 0 |
ORF7a | 6 | F6A | TTC | GCT | 1 | 2 | All | 0 |
ORF7a | 6 | F6del | TTC | --- | 2 | 2 | AY.100 | 0.000092 |
ORF7a | 6 | F6S | tTc | tCc | 1 | 2 | AY.103 | 0.000006 |
ORF7a | 6 | F6S | tTC | tCT | 1 | 2 | AY.103 | 0.000006 |
ORF7a | 6 | F6L | Ttc | Ctc | 1 | 2 | AY.118 | 0.000063 |
ORF7a | 6 | F6L | ttC | ttG | 1 | 2 | AY.118 | 0.000063 |
ORF7a | 6 | F6del | TTC | --- | 2 | 2 | AY.119 | 0.000071 |
ORF7a | 6 | F6F | ttC | ttT | 2 | 2 | AY.119 | 0.000071 |
ORF7a | 6 | F6del | TTC | --- | 2 | 2 | AY.20 | 0.000078 |
ORF7a | 6 | F6C | tTc | tGc | 2 | 2 | AY.20 | 0.000078 |
ORF7a | 6 | F6del | TTC | --- | 2 | 2 | AY.29.1 | 0.000441 |
ORF7a | 6 | F6del | TTC | --- | 2 | 2 | AY.3.1 | 0.000171 |
ORF7a | 6 | F6del | TTC | --- | 2 | 2 | AY.33 | 0.000134 |
ORF7a | 6 | F6S | tTc | tCc | 2 | 2 | AY.36 | 0.000296 |
ORF7a | 6 | F6L | ttC | ttA | 2 | 2 | AY.39 | 0.000049 |
ORF7a | 6 | F6C | tTc | tGc | 2 | 2 | AY.4 | 0.000003 |
ORF7a | 6 | F6del | TTC | --- | 2 | 2 | AY.42 | 0.00008 |
ORF7a | 6 | F6C | tTc | tGc | 2 | 2 | AY.44 | 0.000012 |
ORF7a | 6 | F6I | Ttc | Atc | 2 | 2 | AY.46 | 0.000208 |
ORF7a | 6 | F6F | ttC | ttT | 2 | 2 | AY.5 | 0.000041 |
ORF7a | 6 | F6I | Ttc | Atc | 2 | 2 | AY.67 | 0.000929 |
ORF7a | 6 | F6del | TTC | --- | 2 | 2 | AY.75 | 0.000112 |
ORF7a | 6 | F6F | ttC | ttT | 2 | 2 | AY.93 | 0.000546 |
ORF7a | 6 | F6F | ttC | ttT | 2 | 2 | AY.97 | 0.003401 |
ORF7a | 6 | F6F | ttC | ttT | 2 | 2 | AY.99.2 | 0.000184 |
ORF7a | 6 | F6L | ttC | ttA | 2 | 2 | B | 0.000256 |
ORF7a | 6 | F6V | Ttc | Gtc | 2 | 2 | B.1 | 0.000018 |
ORF7a | 6 | F6Y | tTc | tAc | 2 | 2 | B.1 | 0.000018 |
ORF7a | 6 | F6S | tTc | tCc | 2 | 2 | B.1.1 | 0.000036 |
ORF7a | 6 | F6Y | tTc | tAc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF7a | 6 | F6del | TTC | --- | 2 | 2 | B.1.160 | 0.000062 |
ORF7a | 6 | F6L | Ttc | Ctc | 2 | 2 | B.1.160.25 | 0.022222 |
ORF7a | 6 | F6L | Ttc | Ctc | 2 | 2 | B.1.177.43 | 0.002954 |
ORF7a | 6 | F6L | Ttc | Ctc | 2 | 2 | B.1.177.73 | 0.001133 |
ORF7a | 6 | F6del | TTC | --- | 2 | 2 | B.1.177.86 | 0.000367 |
ORF7a | 6 | F6L | ttC | ttA | 1 | 2 | B.1.258 | 0.000067 |
ORF7a | 6 | F6L | Ttc | Ctc | 1 | 2 | B.1.258 | 0.000067 |
ORF7a | 6 | F6del | TTC | --- | 2 | 2 | B.1.258.11 | 0.000793 |
ORF7a | 6 | F6S | tTc | tCc | 2 | 2 | B.1.324 | 0.00321 |
ORF7a | 6 | F6del | TTC | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF7a | 6 | F6del | TTC | --- | 2 | 2 | B.1.36.38 | 0.003284 |
ORF7a | 6 | F6S | tTc | tCc | 2 | 2 | B.1.429 | 0.000047 |
ORF7a | 6 | F6C | tTc | tGc | 2 | 2 | B.1.526 | 0.000047 |
ORF7a | 6 | F6del | TTC | --- | 2 | 2 | B.1.596 | 0.000174 |
ORF7a | 6 | F6del | TTC | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF7a | 6 | F6del | TTC | --- | 2 | 2 | B.1.637 | 0.000146 |
ORF7a | 6 | F6del1 | ttC | tt- | 2 | 2 | B.40 | 0.000729 |
ORF7a | 6 | F6F | ttC | ttT | 2 | 2 | C.35 | 0.001548 |
ORF7a | 6 | F6L | Ttc | Ctc | 2 | 2 | D.2 | 0.00015 |
ORF7a | 6 | F6F | ttC | ttT | 2 | 2 | P.1 | 0.000032 |
ORF7a | 6 | F6del | TTC | --- | 2 | 2 | Q.1 | 0.000253 |
ORF7a | 6 | F6S | tTc | tCc | 2 | 2 | Q.4 | 0.00091 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | A | 0.000387 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | A.2 | 0.000662 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | AK.1 | 0.012658 |
ORF7a | 6 | F6W | tTC | tGG | 1 | 1 | All | 0 |
ORF7a | 6 | F6H | TTC | CAT | 1 | 1 | All | 0 |
ORF7a | 6 | F6S | tTc | tCc | 1 | 1 | AT.1 | 0.005128 |
ORF7a | 6 | F6L | Ttc | Ctc | 1 | 1 | AY.1 | 0.000396 |
ORF7a | 6 | F6I | Ttc | Atc | 1 | 1 | AY.102 | 0.000027 |
ORF7a | 6 | F6L | Ttc | Ctc | 1 | 1 | AY.102 | 0.000027 |
ORF7a | 6 | F6I | Ttc | Atc | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 6 | F6V | Ttc | Gtc | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 6 | F6C | tTc | tGc | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | AY.107 | 0.000466 |
ORF7a | 6 | F6V | Ttc | Gtc | 1 | 1 | AY.107 | 0.000466 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | AY.108 | 0.001103 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | AY.109 | 0.00074 |
ORF7a | 6 | F6F | ttC | ttT | 1 | 1 | AY.110 | 0.000113 |
ORF7a | 6 | F6F | ttC | ttT | 1 | 1 | AY.117 | 0.000085 |
ORF7a | 6 | F6S | tTc | tCc | 1 | 1 | AY.120 | 0.000037 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | AY.120.1 | 0.000321 |
ORF7a | 6 | F6S | tTc | tCc | 1 | 1 | AY.120.1 | 0.000321 |
ORF7a | 6 | F6L | ttC | ttA | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | AY.121 | 0.000135 |
ORF7a | 6 | F6L | Ttc | Ctc | 1 | 1 | AY.14 | 0.000088 |
ORF7a | 6 | F6L | Ttc | Ctc | 1 | 1 | AY.19 | 0.00114 |
ORF7a | 6 | F6S | tTc | tCc | 1 | 1 | AY.20 | 0.000039 |
ORF7a | 6 | F6L | Ttc | Ctc | 1 | 1 | AY.20 | 0.000039 |
ORF7a | 6 | F6C | tTc | tGc | 1 | 1 | AY.23 | 0.00007 |
ORF7a | 6 | F6S | tTc | tCc | 1 | 1 | AY.25 | 0.000006 |
ORF7a | 6 | F6F | ttC | ttT | 1 | 1 | AY.25 | 0.000006 |
ORF7a | 6 | F6V | Ttc | Gtc | 1 | 1 | AY.25 | 0.000006 |
ORF7a | 6 | F6C | tTc | tGc | 1 | 1 | AY.25 | 0.000006 |
ORF7a | 6 | F6L | Ttc | Ctc | 1 | 1 | AY.26 | 0.000028 |
ORF7a | 6 | F6F | ttC | ttT | 1 | 1 | AY.26 | 0.000028 |
ORF7a | 6 | F6L | Ttc | Ctc | 1 | 1 | AY.27 | 0.000065 |
ORF7a | 6 | F6del2 | TTC | --N | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 6 | F6C | tTc | tGc | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 6 | F6F | ttC | ttT | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 6 | F6S | tTc | tCc | 1 | 1 | AY.3 | 0.00001 |
ORF7a | 6 | F6I | Ttc | Atc | 1 | 1 | AY.3 | 0.00001 |
ORF7a | 6 | F6L | Ttc | Ctc | 1 | 1 | AY.3 | 0.00001 |
ORF7a | 6 | F6F | ttC | ttT | 1 | 1 | AY.3.1 | 0.000085 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | AY.32 | 0.000532 |
ORF7a | 6 | F6F | ttC | ttT | 1 | 1 | AY.32 | 0.000532 |
ORF7a | 6 | F6S | tTc | tCc | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 6 | F6L | TtC | CtA | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 6 | F6Y | tTC | tAT | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 6 | F6S | tTc | tCc | 1 | 1 | AY.34 | 0.000097 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | AY.34 | 0.000097 |
ORF7a | 6 | F6I | Ttc | Atc | 1 | 1 | AY.34.1 | 0.00051 |
ORF7a | 6 | F6F | ttC | ttT | 1 | 1 | AY.34.1 | 0.00051 |
ORF7a | 6 | F6I | Ttc | Atc | 1 | 1 | AY.37 | 0.000316 |
ORF7a | 6 | F6V | Ttc | Gtc | 1 | 1 | AY.37 | 0.000316 |
ORF7a | 6 | F6F | ttC | ttT | 1 | 1 | AY.39 | 0.000025 |
ORF7a | 6 | F6I | Ttc | Atc | 1 | 1 | AY.4 | 0.000002 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF7a | 6 | F6L | ttC | ttA | 1 | 1 | AY.4.5 | 0.000107 |
ORF7a | 6 | F6L | Ttc | Ctc | 1 | 1 | AY.41 | 0.000294 |
ORF7a | 6 | F6L | Ttc | Ctc | 1 | 1 | AY.42 | 0.00004 |
ORF7a | 6 | F6C | tTc | tGc | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | AY.45 | 0.000122 |
ORF7a | 6 | F6I | Ttc | Atc | 1 | 1 | AY.46.1 | 0.001027 |
ORF7a | 6 | F6L | ttC | ttA | 1 | 1 | AY.46.6 | 0.000072 |
ORF7a | 6 | F6I | Ttc | Atc | 1 | 1 | AY.47 | 0.000031 |
ORF7a | 6 | F6C | tTc | tGc | 1 | 1 | AY.5 | 0.000021 |
ORF7a | 6 | F6L | Ttc | Ctc | 1 | 1 | AY.53 | 0.000288 |
ORF7a | 6 | F6F | ttC | ttT | 1 | 1 | AY.53 | 0.000288 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | AY.54 | 0.000095 |
ORF7a | 6 | F6L | Ttc | Ctc | 1 | 1 | AY.54 | 0.000095 |
ORF7a | 6 | F6F | ttC | ttT | 1 | 1 | AY.6 | 0.000041 |
ORF7a | 6 | F6F | ttC | ttT | 1 | 1 | AY.61 | 0.000105 |
ORF7a | 6 | F6F | ttC | ttT | 1 | 1 | AY.65 | 0.000533 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | AY.66 | 0.00107 |
ORF7a | 6 | F6F | ttC | ttT | 1 | 1 | AY.7 | 0.000196 |
ORF7a | 6 | F6L | Ttc | Ctc | 1 | 1 | AY.7 | 0.000196 |
ORF7a | 6 | F6F | ttC | ttT | 1 | 1 | AY.71 | 0.000475 |
ORF7a | 6 | F6Q | TTC | CAA | 1 | 1 | AY.74 | 0.000116 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | AY.79 | 0.001211 |
ORF7a | 6 | F6I | Ttc | Atc | 1 | 1 | AY.79 | 0.001211 |
ORF7a | 6 | F6S | tTC | tCT | 1 | 1 | AY.79 | 0.001211 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | AY.84 | 0.000437 |
ORF7a | 6 | F6I | Ttc | Atc | 1 | 1 | AY.88 | 0.000884 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF7a | 6 | F6V | Ttc | Gtc | 1 | 1 | AY.9.1 | 0.000084 |
ORF7a | 6 | F6F | ttC | ttT | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | AY.94 | 0.000443 |
ORF7a | 6 | F6del2 | TTc | --c | 1 | 1 | AY.98.1 | 0.000048 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | AY.99 | 0.001049 |
ORF7a | 6 | F6S | tTc | tCc | 1 | 1 | AY.99 | 0.001049 |
ORF7a | 6 | F6I | Ttc | Atc | 1 | 1 | AY.99.2 | 0.000092 |
ORF7a | 6 | F6S | tTc | tCc | 1 | 1 | B.1 | 0.000009 |
ORF7a | 6 | F6C | tTc | tGc | 1 | 1 | B.1.1 | 0.000018 |
ORF7a | 6 | F6V | TtC | GtT | 1 | 1 | B.1.1 | 0.000018 |
ORF7a | 6 | F6del1 | ttC | tt- | 1 | 1 | B.1.1 | 0.000018 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | B.1.1.222 | 0.000204 |
ORF7a | 6 | F6L | ttC | ttA | 1 | 1 | B.1.1.232 | 0.001815 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | B.1.1.258 | 0.003257 |
ORF7a | 6 | F6Y | tTc | tAc | 1 | 1 | B.1.1.28 | 0.000311 |
ORF7a | 6 | F6S | tTc | tCc | 1 | 1 | B.1.1.317 | 0.000412 |
ORF7a | 6 | F6L | ttC | ttA | 1 | 1 | B.1.1.318 | 0.000302 |
ORF7a | 6 | F6L | Ttc | Ctc | 1 | 1 | B.1.1.37 | 0.000193 |
ORF7a | 6 | F6F | ttC | ttT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF7a | 6 | F6S | tTc | tCc | 1 | 1 | B.1.1.397 | 0.002252 |
ORF7a | 6 | F6C | tTc | tGc | 1 | 1 | B.1.1.398 | 0.003226 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF7a | 6 | F6F | ttC | ttT | 1 | 1 | B.1.1.526 | 0.003546 |
ORF7a | 6 | F6S | tTc | tCc | 1 | 1 | B.1.1.54 | 0.003021 |
ORF7a | 6 | F6W | tTC | tGG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 6 | F6Q | TTC | CAA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 6 | F6X | tTC | tAG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 6 | F6H | TTC | CAT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 6 | F6A | TTC | GCT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | B.1.115 | 0.021739 |
ORF7a | 6 | F6L | Ttc | Ctc | 1 | 1 | B.1.149 | 0.003425 |
ORF7a | 6 | F6L | Ttc | Ctc | 1 | 1 | B.1.160.33 | 0.004425 |
ORF7a | 6 | F6L | Ttc | Ctc | 1 | 1 | B.1.160.8 | 0.001289 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | B.1.161 | 0.017241 |
ORF7a | 6 | F6V | Ttc | Gtc | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 6 | F6L | ttC | ttA | 1 | 1 | B.1.177.12 | 0.000152 |
ORF7a | 6 | F6L | Ttc | Ctc | 1 | 1 | B.1.177.44 | 0.000519 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF7a | 6 | F6Y | tTc | tAc | 1 | 1 | B.1.177.75 | 0.001041 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF7a | 6 | F6C | tTc | tGc | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 6 | F6S | tTC | tCA | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | B.1.214.2 | 0.0006 |
ORF7a | 6 | F6F | ttC | ttT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF7a | 6 | F6S | tTc | tCc | 1 | 1 | B.1.221 | 0.000071 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | B.1.240 | 0.000216 |
ORF7a | 6 | F6S | tTc | tCc | 1 | 1 | B.1.258.17 | 0.000104 |
ORF7a | 6 | F6S | tTc | tCc | 1 | 1 | B.1.279 | 0.000514 |
ORF7a | 6 | F6L | ttC | ttA | 1 | 1 | B.1.36.2 | 0.010753 |
ORF7a | 6 | F6L | Ttc | Ctc | 1 | 1 | B.1.36.36 | 0.000602 |
ORF7a | 6 | F6C | tTc | tGc | 1 | 1 | B.1.369 | 0.000285 |
ORF7a | 6 | F6F | ttC | ttT | 1 | 1 | B.1.391 | 0.001127 |
ORF7a | 6 | F6Y | tTc | tAc | 1 | 1 | B.1.404 | 0.001302 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7a | 6 | F6L | Ttc | Ctc | 1 | 1 | B.1.468 | 0.005714 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | B.1.470 | 0.001404 |
ORF7a | 6 | F6L | Ttc | Ctc | 1 | 1 | B.1.470 | 0.001404 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF7a | 6 | F6F | ttC | ttT | 1 | 1 | B.1.525 | 0.000113 |
ORF7a | 6 | F6L | Ttc | Ctc | 1 | 1 | B.1.526 | 0.000024 |
ORF7a | 6 | F6S | tTc | tCc | 1 | 1 | B.1.570 | 0.002941 |
ORF7a | 6 | F6Q | TTC | CAA | 1 | 1 | B.1.576 | 0.000907 |
ORF7a | 6 | F6F | ttC | ttT | 1 | 1 | B.1.596 | 0.000087 |
ORF7a | 6 | F6F | ttC | ttT | 1 | 1 | B.1.599 | 0.00365 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 6 | F6C | tTc | tGc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF7a | 6 | F6A | TTc | GCc | 1 | 1 | B.1.621 | 0.000089 |
ORF7a | 6 | F6F | ttC | ttT | 1 | 1 | B.1.621 | 0.000089 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF7a | 6 | F6L | ttC | ttA | 1 | 1 | B.1.637 | 0.000073 |
ORF7a | 6 | F6F | ttC | ttT | 1 | 1 | C.30 | 0.001727 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | C.36.3 | 0.000567 |
ORF7a | 6 | F6L | Ttc | Ctc | 1 | 1 | C.37 | 0.000116 |
ORF7a | 6 | F6F | ttC | ttT | 1 | 1 | D.2 | 0.000075 |
ORF7a | 6 | F6I | Ttc | Atc | 1 | 1 | P.1.12 | 0.000484 |
ORF7a | 6 | F6F | ttC | ttT | 1 | 1 | P.1.14 | 0.000048 |
ORF7a | 6 | F6S | tTc | tCc | 1 | 1 | P.1.14 | 0.000048 |
ORF7a | 6 | F6I | Ttc | Atc | 1 | 1 | P.1.15 | 0.000232 |
ORF7a | 6 | F6S | tTc | tCc | 1 | 1 | P.1.17 | 0.000162 |
ORF7a | 6 | F6I | Ttc | Atc | 1 | 1 | P.1.2 | 0.001156 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | P.2 | 0.000187 |
ORF7a | 6 | F6I | Ttc | Atc | 1 | 1 | P.7 | 0.004367 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | Q.5 | 0.016949 |
ORF7a | 6 | F6del | TTC | --- | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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