CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 56 & Codon = ctT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a56L56LsynctGctT1248958620.46937327559-27561

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a56L56LctGctT586212489All0.001121
ORF7a56L56LctGctT587942B.1.1.70.000525
ORF7a56L56LctGctT513750AY.40.000798
ORF7a56L56LctGctT637649B.10.005835
ORF7a56L56LctGctT528528B.1.36.310.924694
ORF7a56L56LctGctT383520B.1.617.20.001442
ORF7a56L56LctGctT426442AY.1030.002645
ORF7a56L56LctGctT6267AY.99.20.000553
ORF7a56L56LctGctT216237AY.430.000957
ORF7a56L56LctGctT140224AY.250.000842
ORF7a56L56LctGctT202212AY.440.00123
ORF7a56L56LctGctT161164B.1.1.2840.017291
ORF7a56L56LctGctT136136B.1.1.3480.10828
ORF7a56L56LctGctT120131B.1.20.001057
ORF7a56L56LctGctT97108AY.4.20.002104
ORF7a56L56LctGctT6988AY.30.000686
ORF7a56L56LctGctT8186P.10.001276
ORF7a56L56LctGctT6366B.1.1770.00083
ORF7a56L56LctGctT6565B.1.6280.022903
ORF7a56L56LctGctT6161AY.420.002454
ORF7a56L56LctGctT5252AY.1180.003258
ORF7a56L56LctGctT3650B.1.10.000653
ORF7a56L56LctGctT4848B.1.1.3850.214286
ORF7a56L56LctGctT4545B.1.1400.849057
ORF7a56L56LctGctT245B.400.000729
ORF7a56L56LctGctT3139AY.390.000766
ORF7a56L56LctGctT3838R.10.00342
ORF7a56L56LctGctT3737B.1.1.40.110119
ORF7a56L56LctGctT3535AY.1080.038589
ORF7a56L56LctGctT3535AY.940.015494
ORF7a56L56LctGctT3133AY.330.00207
ORF7a56L56LctGctT2132B.1.5260.000494
ORF7a56L56LctGctT2630AY.1020.000689
ORF7a56L56LctGctT2428AY.50.000496
ORF7a56L56LctGctT2528B.1.1.5190.000993
ORF7a56L56LctGctT2626AY.260.000736
ORF7a56L56LctGctT2226B.1.3510.000654
ORF7a56L56LctGctT2225AY.460.00229
ORF7a56L56LctGctT2424AY.1000.001104
ORF7a56L56LctGctT1722B.1.4290.0004
ORF7a56L56LctGctT1122P.1.70.003512
ORF7a56L56LctGctT2121B.1.5920.84
ORF7a56L56LctGctT1820AY.290.000284
ORF7a56L56LctGctT1919B.1.5960.001656
ORF7a56L56LctGctT1019B.1.617.10.00129
ORF7a56L56LctGctT1818B.1.5250.002037
ORF7a56L56LctGctT1717B.1.360.00248
ORF7a56L56LctGctT1016B.1.1.2220.00204
ORF7a56L56LctGctT1616B.1.2580.001065
ORF7a56L56LctGctT1315AY.340.001261
ORF7a56L56LctGctT1415AY.98.10.000678
ORF7a56L56LctGctT1515B.1.1.5250.081967
ORF7a56L56LctGctT1314AY.200.000505
ORF7a56L56LctGctT1313AY.1200.000483
ORF7a56L56LctGctT1313AY.230.000907
ORF7a56L56LctGctT1313B.1.1.330.005471
ORF7a56L56LctGctT1113B.1.6190.009582
ORF7a56L56LctGctT1212AY.20.004274
ORF7a56L56LctGctT1212B.1.36.80.012
ORF7a56L56LctGctT712B.1.4270.000353
ORF7a56L56LctGctT911B.1.36.170.004447
ORF7a56L56LctGctT1111B.1.5510.014194
ORF7a56L56LctGctT1010AY.1210.001353
ORF7a56L56LctGctT910AY.4.50.000967
ORF7a56L56LctGctT910AY.46.60.00065
ORF7a56L56LctGctT910C.370.001045
ORF7a56L56LctGctT99AY.1060.003014
ORF7a56L56LctGctT89AY.1190.000282
ORF7a56L56LctGctT99AY.9.20.000331
ORF7a56L56LctGctT99B.1.1.1290.082569
ORF7a56L56LctGctT99P.1.150.002091
ORF7a56L56LctGctT89Q.10.001011
ORF7a56L56LctGctT48AY.1160.001147
ORF7a56L56LctGctT88B.1.1.1280.056738
ORF7a56L56LctGctT18B.1.177.210.000076
ORF7a56L56LctGctT18B.1.619.10.000641
ORF7a56L56LctGctT48B.1.6210.000354
ORF7a56L56LctGctT28C.160.002121
ORF7a56L56LctGctT77AY.1170.000592
ORF7a56L56LctGctT77AY.34.10.00357
ORF7a56L56LctGctT57AY.470.000156
ORF7a56L56LctGctT77AY.60.000288
ORF7a56L56LctGctT67AY.720.008163
ORF7a56L56LctGctT77B.1.1.700.002387
ORF7a56L56LctGctT66A.23.10.004225
ORF7a56L56LctGctT66AY.160.002278
ORF7a56L56LctGctT46AY.300.001583
ORF7a56L56LctGctT36AY.39.10.000119
ORF7a56L56LctGctT56AY.980.000395
ORF7a56L56LctGctT66B.1.1.2200.011152
ORF7a56L56LctGctT66B.1.1.4160.00543
ORF7a56L56LctGctT66B.1.428.30.076923
ORF7a56L56LctGctT66P.1.120.002904
ORF7a56L56LctGctT66P.1.140.000287
ORF7a56L56LctGctT66P.20.00112
ORF7a56L56LctGctT350.166667
ORF7a56L56LctGctT25AY.360.000296
ORF7a56L56LctGctT45AY.5.40.001107
ORF7a56L56LctGctT45AY.590.002119
ORF7a56L56LctGctT45AY.610.000419
ORF7a56L56LctGctT55B.1.1.10.001633
ORF7a56L56LctGctT55B.1.1.2140.000277
ORF7a56L56LctGctT35B.1.1.280.000934
ORF7a56L56LctGctT55B.1.177.170.004105
ORF7a56L56LctGctT55B.1.2210.000355
ORF7a56L56LctGctT45B.1.2430.000278
ORF7a56L56LctGctT25B.1.6370.000146
ORF7a56L56LctGctT15C.36.30.000567
ORF7a56L56LctGctT44AY.120.001264
ORF7a56L56LctGctT44AY.240.001724
ORF7a56L56LctGctT44AY.540.000381
ORF7a56L56LctGctT44B.1.1.4450.148148
ORF7a56L56LctGctT14B.1.1.500.000679
ORF7a56L56LctGctT44B.1.258.170.000416
ORF7a56L56LctGctT44B.1.438.10.000429
ORF7a56L56LctGctT24B.1.4990.002101
ORF7a56L56LctGctT44B.1.5880.00364
ORF7a56L56LctGctT44C.260.029412
ORF7a56L56LctGctT13AY.130.000161
ORF7a56L56LctGctT23AY.140.000176
ORF7a56L56LctGctT33AY.46.40.000494
ORF7a56L56LctGctT33AY.480.001395
ORF7a56L56LctGctT13AY.550.000917
ORF7a56L56LctGctT33AY.740.000347
ORF7a56L56LctGctT33AY.750.000168
ORF7a56L56LctGctT33AY.75.10.000541
ORF7a56L56LctGctT33AY.90.000203
ORF7a56L56LctGctT23B0.000256
ORF7a56L56LctGctT33B.1.1.1590.014019
ORF7a56L56LctGctT33B.1.1.2690.00406
ORF7a56L56LctGctT33B.1.1.4340.001046
ORF7a56L56LctGctT33B.1.1600.000094
ORF7a56L56LctGctT23B.1.2060.001631
ORF7a56L56LctGctT33B.1.258.110.001189
ORF7a56L56LctGctT33B.1.36.290.001552
ORF7a56L56LctGctT33B.1.4330.009585
ORF7a56L56LctGctT33B.1.5610.001191
ORF7a56L56LctGctT33B.1.6200.002838
ORF7a56L56LctGctT33Q.30.000435
ORF7a56L56LctGctT23Q.80.00033
ORF7a56L56LctGctT22A0.000774
ORF7a56L56LctGctT22A.2.50.000998
ORF7a56L56LctGctT22AD.2.10.090909
ORF7a56L56LctGctT22AY.10.000791
ORF7a56L56LctGctT12AY.1070.000466
ORF7a56L56LctGctT12AY.1100.000113
ORF7a56L56LctGctT22AY.1130.000285
ORF7a56L56LctGctT12AY.190.00114
ORF7a56L56LctGctT12AY.270.000065
ORF7a56L56LctGctT22AY.450.000243
ORF7a56L56LctGctT22AY.46.50.000397
ORF7a56L56LctGctT22AY.5.30.000675
ORF7a56L56LctGctT22AY.650.001066
ORF7a56L56LctGctT12AY.7.10.000113
ORF7a56L56LctGctT12AY.7.20.000559
ORF7a56L56LctGctT22B.1.1.1700.002494
ORF7a56L56LctGctT22B.1.1.3110.000716
ORF7a56L56LctGctT22B.1.1.3370.007194
ORF7a56L56LctGctT22B.1.1.370.000386
ORF7a56L56LctGctT22B.1.1.5210.010695
ORF7a56L56LctGctT22B.1.110.30.001437
ORF7a56L56LctGctT22B.1.160.260.004843
ORF7a56L56LctGctT22B.1.2100.004264
ORF7a56L56LctGctT22B.1.30.005236
ORF7a56L56LctGctT22B.1.3010.011834
ORF7a56L56LctGctT22B.1.3110.000549
ORF7a56L56LctGctT22B.1.351.20.000605
ORF7a56L56LctGctT22B.1.4160.002538
ORF7a56L56LctGctT12B.1.466.20.000391
ORF7a56L56LctGctT22B.1.4700.002809
ORF7a56L56LctGctT12B.1.5170.000427
ORF7a56L56LctGctT22B.1.6120.005305
ORF7a56L56LctGctT12B.1.617.30.002985
ORF7a56L56LctGctT22D.20.00015
ORF7a56L56LctGctT11A.10.000282
ORF7a56L56LctGctT11AY.1090.00074
ORF7a56L56LctGctT11AY.1140.000231
ORF7a56L56LctGctT11AY.120.20.001285
ORF7a56L56LctGctT11AY.16.10.00047
ORF7a56L56LctGctT11AY.23.10.000417
ORF7a56L56LctGctT11AY.29.10.000221
ORF7a56L56LctGctT11AY.310.018519
ORF7a56L56LctGctT11AY.350.000233
ORF7a56L56LctGctT11AY.380.000499
ORF7a56L56LctGctT11AY.400.000964
ORF7a56L56LctGctT11AY.510.000909
ORF7a56L56LctGctT11AY.520.000814
ORF7a56L56LctGctT11AY.620.000436
ORF7a56L56LctGctT11AY.630.000387
ORF7a56L56LctGctT11AY.670.000464
ORF7a56L56LctGctT11AY.710.000475
ORF7a56L56LctGctT11AY.730.000665
ORF7a56L56LctGctT11AY.820.001357
ORF7a56L56LctGctT11AY.850.000427
ORF7a56L56LctGctT11AY.9.10.000084
ORF7a56L56LctGctT11AY.99.10.001553
ORF7a56L56LctGctT11B.1.1.1920.002309
ORF7a56L56LctGctT11B.1.1.1980.001468
ORF7a56L56LctGctT11B.1.1.2940.001266
ORF7a56L56LctGctT11B.1.1.3020.002075
ORF7a56L56LctGctT11B.1.1.3260.001761
ORF7a56L56LctGctT11B.1.1.3920.052632
ORF7a56L56LctGctT11B.1.1.4090.002833
ORF7a56L56LctGctT11B.1.1.4320.001266
ORF7a56L56LctGctT11B.1.1.4420.018519
ORF7a56L56LctGctT11B.1.1.530.013699
ORF7a56L56LctGctT11B.1.1.770.041667
ORF7a56L56LctGctT11B.1.1110.001175
ORF7a56L56LctGctT11B.1.1690.014925
ORF7a56L56LctGctT11B.1.177.150.000631
ORF7a56L56LctGctT11B.1.177.40.000211
ORF7a56L56LctGctT11B.1.177.580.001332
ORF7a56L56LctGctT11B.1.177.770.000726
ORF7a56L56LctGctT11B.1.177.810.000189
ORF7a56L56LctGctT11B.1.177.830.001481
ORF7a56L56LctGctT11B.1.177.860.000183
ORF7a56L56LctGctT11B.1.1900.01
ORF7a56L56LctGctT11B.1.1990.004132
ORF7a56L56LctGctT11B.1.2350.002519
ORF7a56L56LctGctT11B.1.2450.03125
ORF7a56L56LctGctT11B.1.2640.012346
ORF7a56L56LctGctT11B.1.3060.005714
ORF7a56L56LctGctT11B.1.3260.007576
ORF7a56L56LctGctT11B.1.3320.003497
ORF7a56L56LctGctT11B.1.3490.000715
ORF7a56L56LctGctT11B.1.3690.000285
ORF7a56L56LctGctT11B.1.3750.00082
ORF7a56L56LctGctT11B.1.3910.001127
ORF7a56L56LctGctT11B.1.4000.000429
ORF7a56L56LctGctT11B.1.4800.002488
ORF7a56L56LctGctT11B.1.5210.004975
ORF7a56L56LctGctT11B.1.5640.000426
ORF7a56L56LctGctT11B.1.5800.004065
ORF7a56L56LctGctT11B.1.6060.006024
ORF7a56L56LctGctT11B.1.621.10.000506
ORF7a56L56LctGctT11B.1.6230.000536
ORF7a56L56LctGctT11B.1.6270.00202
ORF7a56L56LctGctT11B.1.9.50.005682
ORF7a56L56LctGctT11B.1.940.027027
ORF7a56L56LctGctT11B.40.002208
ORF7a56L56LctGctT11C.1.20.004255
ORF7a56L56LctGctT11C.140.004329
ORF7a56L56LctGctT11C.180.002591
ORF7a56L56LctGctT11C.40.01
ORF7a56L56LctGctT11P.1.17.10.000875

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.