CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 56 & Codon = Atg

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a56L56MnonsynCtgAtg174174127559-27561

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a56L56MCtgAtg174174All0.000033
ORF7a56L56MCtgAtg104104AY.740.012027
ORF7a56L56MCtgAtg2121B.1.1.70.000019
ORF7a56L56MCtgAtg66AY.40.000009
ORF7a56L56MCtgAtg55B.1.177.810.000947
ORF7a56L56MCtgAtg33AY.330.0002
ORF7a56L56MCtgAtg33AY.470.000093
ORF7a56L56MCtgAtg33B.1.177.860.00055
ORF7a56L56MCtgAtg33B.1.617.20.000011
ORF7a56L56MCtgAtg22AY.250.000012
ORF7a56L56MCtgAtg22AY.39.10.000079
ORF7a56L56MCtgAtg22AY.420.00008
ORF7a56L56MCtgAtg22AY.440.000012
ORF7a56L56MCtgAtg22AY.98.10.000097
ORF7a56L56MCtgAtg22B.10.000018
ORF7a56L56MCtgAtg22B.1.10.000036
ORF7a56L56MCtgAtg22B.1.1.5190.000079
ORF7a56L56MCtgAtg22B.1.3510.000059
ORF7a56L56MCtgAtg11AY.230.00007
ORF7a56L56MCtgAtg11AY.4.20.000022
ORF7a56L56MCtgAtg11AY.430.000004
ORF7a56L56MCtgAtg11AY.50.000021
ORF7a56L56MCtgAtg11B.1.1080.005814
ORF7a56L56MCtgAtg11B.1.20.000009
ORF7a56L56MCtgAtg11B.1.4160.001269
ORF7a56L56MCtgAtg11B.1.617.10.000129

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.