CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 54 | F54del1 | del | ttT | tt- | 4050 | 3468 | 0.856296 | 27553-27555 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 54 | F54del1 | ttT | tt- | 3468 | 4050 | All | 0.000663 |
ORF7a | 54 | F54del1 | ttT | tt- | 1248 | 1409 | AY.4 | 0.001942 |
ORF7a | 54 | F54del1 | ttT | tt- | 324 | 519 | AY.25 | 0.001949 |
ORF7a | 54 | F54del1 | ttT | tt- | 386 | 397 | B.1.1.7 | 0.000346 |
ORF7a | 54 | F54del1 | ttT | tt- | 276 | 278 | AY.26 | 0.007814 |
ORF7a | 54 | F54del1 | ttT | tt- | 232 | 240 | AY.43 | 0.001028 |
ORF7a | 54 | F54del1 | ttT | tt- | 108 | 124 | AY.103 | 0.000671 |
ORF7a | 54 | F54del1 | ttT | tt- | 92 | 123 | B.1.617.2 | 0.000346 |
ORF7a | 54 | F54del1 | ttT | tt- | 110 | 114 | AY.39 | 0.002718 |
ORF7a | 54 | F54del1 | ttT | tt- | 103 | 106 | AY.29 | 0.001625 |
ORF7a | 54 | F54del1 | ttT | tt- | 61 | 90 | AY.44 | 0.000371 |
ORF7a | 54 | F54del1 | ttT | tt- | 71 | 81 | AY.3 | 0.000706 |
ORF7a | 54 | F54del1 | ttT | tt- | 61 | 65 | AY.4.2 | 0.001323 |
ORF7a | 54 | F54del1 | ttT | tt- | 2 | 32 | AY.7 | 0.000392 |
ORF7a | 54 | F54del1 | ttT | tt- | 10 | 28 | AY.100 | 0.00046 |
ORF7a | 54 | F54del1 | ttT | tt- | 27 | 27 | AY.46.6 | 0.00195 |
ORF7a | 54 | F54del1 | ttT | tt- | 4 | 25 | AY.39.1 | 0.000158 |
ORF7a | 54 | F54del1 | ttT | tt- | 24 | 24 | AY.107 | 0.011184 |
ORF7a | 54 | F54del1 | ttT | tt- | 24 | 24 | AY.120 | 0.000892 |
ORF7a | 54 | F54del1 | ttT | tt- | 19 | 23 | AY.47 | 0.000591 |
ORF7a | 54 | F54del1 | ttT | tt- | 15 | 22 | AY.5 | 0.00031 |
ORF7a | 54 | F54del1 | ttT | tt- | 20 | 20 | AY.6 | 0.000823 |
ORF7a | 54 | F54del1 | ttT | tt- | 15 | 15 | AY.45 | 0.001825 |
ORF7a | 54 | F54del1 | ttT | tt- | 13 | 13 | AY.20 | 0.000505 |
ORF7a | 54 | F54del1 | ttT | tt- | 13 | 13 | AY.30 | 0.005144 |
ORF7a | 54 | F54del1 | ttT | tt- | 13 | 13 | B.1.1.258 | 0.042345 |
ORF7a | 54 | F54del1 | ttT | tt- | 9 | 9 | AY.98 | 0.000711 |
ORF7a | 54 | F54del1 | ttT | tt- | 7 | 8 | AY.102 | 0.000186 |
ORF7a | 54 | F54del1 | ttT | tt- | 8 | 8 | AY.113 | 0.001139 |
ORF7a | 54 | F54del1 | ttT | tt- | 8 | 8 | AY.119 | 0.000282 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 7 | AY.90 | 0.000684 |
ORF7a | 54 | F54del1 | ttT | tt- | 7 | 7 | P.1 | 0.00011 |
ORF7a | 54 | F54del1 | ttT | tt- | 5 | 6 | AY.33 | 0.000334 |
ORF7a | 54 | F54del1 | ttT | tt- | 6 | 6 | AY.98.1 | 0.000291 |
ORF7a | 54 | F54del1 | ttT | tt- | 6 | 6 | B.1.2 | 0.000053 |
ORF7a | 54 | F54del1 | ttT | tt- | 5 | 5 | AY.118 | 0.000313 |
ORF7a | 54 | F54del1 | ttT | tt- | 5 | 5 | AY.13 | 0.000805 |
ORF7a | 54 | F54del1 | ttT | tt- | 5 | 5 | AY.35 | 0.001165 |
ORF7a | 54 | F54del1 | ttT | tt- | 5 | 5 | AY.42 | 0.000201 |
ORF7a | 54 | F54del1 | ttT | tt- | 4 | 4 | AY.114 | 0.000924 |
ORF7a | 54 | F54del1 | ttT | tt- | 3 | 4 | AY.23 | 0.000209 |
ORF7a | 54 | F54del1 | ttT | tt- | 4 | 4 | AY.87 | 0.003331 |
ORF7a | 54 | F54del1 | ttT | tt- | 4 | 4 | AY.9 | 0.00027 |
ORF7a | 54 | F54del1 | ttT | tt- | 4 | 4 | AY.99.2 | 0.000369 |
ORF7a | 54 | F54del1 | ttT | tt- | 4 | 4 | B.1.1 | 0.000073 |
ORF7a | 54 | F54del1 | ttT | tt- | 4 | 4 | B.1.160 | 0.000125 |
ORF7a | 54 | F54del1 | ttT | tt- | 4 | 4 | Q.1 | 0.000505 |
ORF7a | 54 | F54del1 | ttT | tt- | 3 | 3 | AY.3.1 | 0.000256 |
ORF7a | 54 | F54del1 | ttT | tt- | 2 | 3 | AY.34 | 0.000194 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 3 | AY.46 | 0.000104 |
ORF7a | 54 | F54del1 | ttT | tt- | 3 | 3 | AY.54 | 0.000286 |
ORF7a | 54 | F54del1 | ttT | tt- | 3 | 3 | AY.62 | 0.001307 |
ORF7a | 54 | F54del1 | ttT | tt- | 3 | 3 | AY.65 | 0.001599 |
ORF7a | 54 | F54del1 | ttT | tt- | 3 | 3 | B.1 | 0.000027 |
ORF7a | 54 | F54del1 | ttT | tt- | 3 | 3 | B.1.177 | 0.00004 |
ORF7a | 54 | F54del1 | ttT | tt- | 3 | 3 | B.1.351 | 0.000089 |
ORF7a | 54 | F54del1 | ttT | tt- | 3 | 3 | Q.8 | 0.000495 |
ORF7a | 54 | F54del1 | ttT | tt- | 2 | 2 | AY.109 | 0.001479 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 2 | AY.117 | 0.000085 |
ORF7a | 54 | F54del1 | ttT | tt- | 2 | 2 | AY.120.1 | 0.000642 |
ORF7a | 54 | F54del1 | ttT | tt- | 2 | 2 | AY.2 | 0.000712 |
ORF7a | 54 | F54del1 | ttT | tt- | 2 | 2 | AY.29.1 | 0.000441 |
ORF7a | 54 | F54del1 | ttT | tt- | 2 | 2 | AY.46.4 | 0.000329 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 2 | AY.46.5 | 0.000198 |
ORF7a | 54 | F54del1 | ttT | tt- | 2 | 2 | AY.49 | 0.00639 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 2 | AY.64 | 0.000595 |
ORF7a | 54 | F54del1 | ttT | tt- | 2 | 2 | AY.7.2 | 0.001119 |
ORF7a | 54 | F54del1 | ttT | tt- | 2 | 2 | B.1.1.220 | 0.003717 |
ORF7a | 54 | F54del1 | ttT | tt- | 2 | 2 | B.1.1.372 | 0.001377 |
ORF7a | 54 | F54del1 | ttT | tt- | 2 | 2 | B.1.1.519 | 0.000079 |
ORF7a | 54 | F54del1 | ttT | tt- | 2 | 2 | B.1.525 | 0.000226 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | AY.110 | 0.000113 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | AY.116 | 0.000287 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | AY.12 | 0.000316 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | AY.121 | 0.000135 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | AY.14 | 0.000088 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | AY.19 | 0.00114 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | AY.22 | 0.002092 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | AY.37 | 0.000316 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | AY.4.4 | 0.000409 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | AY.48 | 0.000465 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | AY.52 | 0.000814 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | AY.57 | 0.000656 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | AY.61 | 0.000105 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | AY.66 | 0.00107 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | AY.7.1 | 0.000113 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | AY.75 | 0.000056 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | AY.79 | 0.001211 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | AY.88 | 0.000884 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | AY.96 | 0.002075 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | B.1.1.194 | 0.00495 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | B.1.1.205 | 0.003717 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | B.1.1.209 | 0.008929 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | B.1.1.241 | 0.00207 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | B.1.1.284 | 0.000107 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | B.1.1.432 | 0.001266 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | B.1.160.16 | 0.000929 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | B.1.214.2 | 0.0006 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | B.1.236 | 0.002053 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | B.1.258 | 0.000067 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | B.1.258.9 | 0.005 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | B.1.36.35 | 0.002604 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | B.1.575 | 0.000303 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | B.1.621 | 0.000089 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | B.11 | 0.005128 |
ORF7a | 54 | F54del1 | ttT | tt- | 1 | 1 | C.36.3 | 0.000567 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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