CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 52 & Codon = aTc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a52N52InonsynaAcaTc52260.527547-27549

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a52N52IaAcaTc2652All0.000005
ORF7a52N52IaAcaTc216AY.250.000012
ORF7a52N52IaAcaTc49B.1.617.20.000015
ORF7a52N52IaAcaTc66AY.440.000037
ORF7a52N52IaAcaTc14B.1.1.70.000001
ORF7a52N52IaAcaTc22AY.1020.000053
ORF7a52N52IaAcaTc22AY.40.000003
ORF7a52N52IaAcaTc11AY.1030.000006
ORF7a52N52IaAcaTc11AY.1200.000037
ORF7a52N52IaAcaTc11AY.390.000025
ORF7a52N52IaAcaTc11AY.450.000122
ORF7a52N52IaAcaTc11AY.460.000104
ORF7a52N52IaAcaTc11AY.610.000105
ORF7a52N52IaAcaTc11B.10.000009
ORF7a52N52IaAcaTc11B.1.1770.000013
ORF7a52N52IaAcaTc11B.1.5150.014493

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.