CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 52 & Codon = Tac

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a52N52YnonsynAacTac54410.75925927547-27549

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a52N52YAacTac4154All0.000008
ORF7a52N52YAacTac1120AY.250.000066
ORF7a52N52YAacTac77B.1.6340.023973
ORF7a52N52YAacTac77C.360.006375
ORF7a52N52YAacTac220.111111
ORF7a52N52YAacTac22AY.330.000134
ORF7a52N52YAacTac12B.1.1.70.000001
ORF7a52N52YAacTac11AY.1030.000006
ORF7a52N52YAacTac11AY.1190.000035
ORF7a52N52YAacTac11AY.200.000039
ORF7a52N52YAacTac11AY.390.000025
ORF7a52N52YAacTac11AY.40.000002
ORF7a52N52YAacTac11AY.430.000004
ORF7a52N52YAacTac11AY.60.000041
ORF7a52N52YAacTac11B.1.1600.000031
ORF7a52N52YAacTac11B.1.1770.000013
ORF7a52N52YAacTac11B.1.2340.000132
ORF7a52N52YAacTac11P.10.000016

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.