CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 52

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF7a	52	N52N		syn	aaC	aaT	6135	6135	1	27547-27549
ORF7a	52	N52del		del	AAC	---	5525	5525	1	27547-27549
ORF7a	52	N52del2		del	aAC	a--	1812	1807	0.997241	27547-27549
ORF7a	52	N52del2		del	AAc	--c	1812	5	0.00275938	27547-27549
ORF7a	52	N52D		nonsyn	Aac	Gac	191	184	0.963351	27547-27549
ORF7a	52	N52D		nonsyn	AaC	GaT	191	7	0.0366492	27547-27549
ORF7a	52	N52K		nonsyn	aaC	aaA	190	161	0.847368	27547-27549
ORF7a	52	N52K		nonsyn	aaC	aaG	190	29	0.152632	27547-27549
ORF7a	52	N52del1		del	aaC	aa-	85	56	0.658824	27547-27549
ORF7a	52	N52del1		del	Aac	-ac	85	28	0.329412	27547-27549
ORF7a	52	N52del1		del	AAC	-NN	85	1	0.0117647	27547-27549
ORF7a	52	N52S		nonsyn	aAc	aGc	72	58	0.805556	27547-27549
ORF7a	52	N52S		nonsyn	aAC	aGT	72	7	0.0972222	27547-27549
ORF7a	52	N52S		nonsyn	AAc	TCc	72	3	0.0416667	27547-27549
ORF7a	52	N52S		nonsyn	AAC	TCT	72	3	0.0416667	27547-27549
ORF7a	52	N52S		nonsyn	AAC	TCA	72	1	0.0138889	27547-27549
ORF7a	52	N52L		nonsyn	AAC	CTA	59	46	0.779661	27547-27549
ORF7a	52	N52L		nonsyn	AAC	TTA	59	9	0.152542	27547-27549
ORF7a	52	N52L		nonsyn	AAC	CTT	59	4	0.0677966	27547-27549
ORF7a	52	N52Y		nonsyn	Aac	Tac	54	41	0.759259	27547-27549
ORF7a	52	N52Y		nonsyn	AaC	TaT	54	13	0.240741	27547-27549
ORF7a	52	N52I		nonsyn	aAc	aTc	52	26	0.5	27547-27549
ORF7a	52	N52I		nonsyn	aAC	aTT	52	17	0.326923	27547-27549
ORF7a	52	N52I		nonsyn	aAC	aTA	52	9	0.173077	27547-27549
ORF7a	52	N52T		nonsyn	aAc	aCc	31	23	0.741935	27547-27549
ORF7a	52	N52T		nonsyn	aAC	aCA	31	5	0.16129	27547-27549
ORF7a	52	N52T		nonsyn	aAC	aCT	31	3	0.0967742	27547-27549
ORF7a	52	N52V		nonsyn	AAC	GTT	26	21	0.807692	27547-27549
ORF7a	52	N52V		nonsyn	AAC	GTA	26	4	0.153846	27547-27549
ORF7a	52	N52V		nonsyn	AAc	GTc	26	1	0.0384615	27547-27549
ORF7a	52	N52R		nonsyn	aAC	aGA	22	16	0.727273	27547-27549
ORF7a	52	N52R		nonsyn	aAC	aGG	22	3	0.136364	27547-27549
ORF7a	52	N52R		nonsyn	AAC	CGA	22	2	0.0909091	27547-27549
ORF7a	52	N52R		nonsyn	AAC	CGT	22	1	0.0454545	27547-27549
ORF7a	52	N52X		nonsyn	AaC	TaA	18	9	0.5	27547-27549
ORF7a	52	N52X		nonsyn	AAC	TGA	18	8	0.444444	27547-27549
ORF7a	52	N52X		nonsyn	AaC	TaG	18	1	0.0555556	27547-27549
ORF7a	52	N52F		nonsyn	AAC	TTT	16	15	0.9375	27547-27549
ORF7a	52	N52F		nonsyn	AAc	TTc	16	1	0.0625	27547-27549
ORF7a	52	N52C		nonsyn	AAC	TGT	10	9	0.9	27547-27549
ORF7a	52	N52C		nonsyn	AAc	TGc	10	1	0.1	27547-27549
ORF7a	52	N52H		nonsyn	Aac	Cac	8	6	0.75	27547-27549
ORF7a	52	N52H		nonsyn	AaC	CaT	8	2	0.25	27547-27549
ORF7a	52	N52G		nonsyn	AAC	GGA	7	2	0.285714	27547-27549
ORF7a	52	N52G		nonsyn	AAC	GGG	7	2	0.285714	27547-27549
ORF7a	52	N52G		nonsyn	AAc	GGc	7	2	0.285714	27547-27549
ORF7a	52	N52G		nonsyn	AAC	GGT	7	1	0.142857	27547-27549
ORF7a	52	N52Q		nonsyn	AaC	CaA	3	2	0.666667	27547-27549
ORF7a	52	N52Q		nonsyn	AaC	CaG	3	1	0.333333	27547-27549
ORF7a	52	N52P		nonsyn	AAC	CCA	3	1	0.333333	27547-27549
ORF7a	52	N52P		nonsyn	AAC	CCT	3	1	0.333333	27547-27549
ORF7a	52	N52P		nonsyn	AAc	CCc	3	1	0.333333	27547-27549
ORF7a	52	N52W		nonsyn	AAC	TGG	1	1	1	27547-27549
ORF7a	52	N52A		nonsyn	AAC	GCT	1	1	1	27547-27549
ORF7a	52	N52E		nonsyn	AaC	GaA	1	1	1	27547-27549

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF7a	52	N52N	aaC	aaT	6135	6135	All	0.001173
ORF7a	52	N52del	AAC	---	5525	5525	All	0.001057
ORF7a	52	N52del2	aAC	a--	1807	1812	All	0.000346
ORF7a	52	N52del2	AAc	--c	5	1812	All	0.000001
ORF7a	52	N52del	AAC	---	1353	1353	B.1.617.2	0.005095
ORF7a	52	N52N	aaC	aaT	984	984	AY.109	0.727811
ORF7a	52	N52N	aaC	aaT	839	839	B.1.1.7	0.000751
ORF7a	52	N52N	aaC	aaT	714	714	AY.4	0.001111
ORF7a	52	N52del2	aAC	a--	659	660	B.1.617.2	0.002481
ORF7a	52	N52del2	AAc	--c	1	660	B.1.617.2	0.000004
ORF7a	52	N52del	AAC	---	580	580	B.1.1.7	0.000519
ORF7a	52	N52del2	aAC	a--	566	566	AY.43	0.002508
ORF7a	52	N52del	AAC	---	554	554	AY.25	0.003332
ORF7a	52	N52del	AAC	---	398	398	AY.4	0.000619
ORF7a	52	N52N	aaC	aaT	349	349	AY.29	0.005505
ORF7a	52	N52N	aaC	aaT	255	255	B.1	0.002336
ORF7a	52	N52N	aaC	aaT	247	247	AY.102	0.006549
ORF7a	52	N52del	AAC	---	231	231	AY.102	0.006125
ORF7a	52	N52N	aaC	aaT	219	219	B.1.617.2	0.000825
ORF7a	52	N52N	aaC	aaT	218	218	AY.103	0.001354
ORF7a	52	N52del	AAC	---	213	213	AY.43	0.000944
ORF7a	52	N52D	Aac	Gac	184	191	All	0.000035
ORF7a	52	N52D	AaC	GaT	7	191	All	0.000001
ORF7a	52	N52K	aaC	aaA	161	190	All	0.000031
ORF7a	52	N52K	aaC	aaG	29	190	All	0.000006
ORF7a	52	N52N	aaC	aaT	183	183	AY.44	0.001114
ORF7a	52	N52N	aaC	aaT	183	183	B.1.2	0.001611
ORF7a	52	N52del	AAC	---	182	182	B.1.177.21	0.013918
ORF7a	52	N52N	aaC	aaT	151	151	P.1	0.002379
ORF7a	52	N52del	AAC	---	137	137	AY.103	0.000851
ORF7a	52	N52del	AAC	---	136	136	AY.39	0.003361
ORF7a	52	N52del	AAC	---	131	131	AY.3	0.001303
ORF7a	52	N52N	aaC	aaT	125	125	B.1.632	0.838926
ORF7a	52	N52del2	aAC	a--	111	111	AY.4	0.000173
ORF7a	52	N52N	aaC	aaT	108	108	AY.25	0.00065
ORF7a	52	N52del	AAC	---	107	107	AY.44	0.000651
ORF7a	52	N52N	aaC	aaT	96	96	B.1.1	0.001742
ORF7a	52	N52del	AAC	---	94	94	AY.120	0.003495
ORF7a	52	N52del1	aaC	aa-	56	85	All	0.000011
ORF7a	52	N52del1	Aac	-ac	28	85	All	0.000005
ORF7a	52	N52del1	AAC	-NN	1	85	All	0
ORF7a	52	N52D	Aac	Gac	85	85	B.1.1.7	0.000076
ORF7a	52	N52del2	aAC	a--	83	83	AY.25	0.000499
ORF7a	52	N52del	AAC	---	79	79	AY.26	0.002237
ORF7a	52	N52N	aaC	aaT	79	79	B.1.429	0.001859
ORF7a	52	N52del	AAC	---	77	77	AY.29	0.001215
ORF7a	52	N52S	aAc	aGc	58	72	All	0.000011
ORF7a	52	N52S	aAC	aGT	7	72	All	0.000001
ORF7a	52	N52S	AAC	TCT	3	72	All	0.000001
ORF7a	52	N52S	AAc	TCc	3	72	All	0.000001
ORF7a	52	N52S	AAC	TCA	1	72	All	0
ORF7a	52	N52del	AAC	---	68	68	AY.46.4	0.011186
ORF7a	52	N52del	AAC	---	62	62	AY.100	0.002852
ORF7a	52	N52L	AAC	CTA	46	59	All	0.000009
ORF7a	52	N52L	AAC	TTA	9	59	All	0.000002
ORF7a	52	N52L	AAC	CTT	4	59	All	0.000001
ORF7a	52	N52del	AAC	---	56	56	AY.47	0.001742
ORF7a	52	N52Y	Aac	Tac	41	54	All	0.000008
ORF7a	52	N52Y	AaC	TaT	13	54	All	0.000002
ORF7a	52	N52N	aaC	aaT	54	54	AY.98.1	0.002615
ORF7a	52	N52N	aaC	aaT	53	53	AY.43	0.000235
ORF7a	52	N52I	aAc	aTc	26	52	All	0.000005
ORF7a	52	N52I	aAC	aTT	17	52	All	0.000003
ORF7a	52	N52I	aAC	aTA	9	52	All	0.000002
ORF7a	52	N52N	aaC	aaT	52	52	C.36.3	0.029495
ORF7a	52	N52N	aaC	aaT	51	51	AY.3	0.000507
ORF7a	52	N52del	AAC	---	48	48	AY.3.1	0.004092
ORF7a	52	N52N	aaC	aaT	47	47	P.1.14	0.002247
ORF7a	52	N52del	AAC	---	44	44	B.1.2	0.000387
ORF7a	52	N52N	aaC	aaT	44	44	B.1.243	0.003062
ORF7a	52	N52L	AAC	CTA	42	42	AY.120	0.001562
ORF7a	52	N52del	AAC	---	42	42	B.1	0.000385
ORF7a	52	N52del	AAC	---	39	39	B.1.621	0.003452
ORF7a	52	N52del2	aAC	a--	37	37	AY.103	0.00023
ORF7a	52	N52del	AAC	---	37	37	B.1.1.284	0.003974
ORF7a	52	N52K	aaC	aaA	33	36	B.1.1.7	0.00003
ORF7a	52	N52K	aaC	aaG	3	36	B.1.1.7	0.000003
ORF7a	52	N52del2	aAC	a--	33	33	AY.46	0.003435
ORF7a	52	N52del2	aAC	a--	32	33	B.1.1.7	0.000029
ORF7a	52	N52del2	AAc	--c	1	33	B.1.1.7	0.000001
ORF7a	52	N52N	aaC	aaT	32	32	AY.29.1	0.007056
ORF7a	52	N52T	aAc	aCc	23	31	All	0.000004
ORF7a	52	N52T	aAC	aCA	5	31	All	0.000001
ORF7a	52	N52T	aAC	aCT	3	31	All	0.000001
ORF7a	52	N52del	AAC	---	31	31	AY.54	0.002956
ORF7a	52	N52N	aaC	aaT	30	30	B.1.177	0.000395
ORF7a	52	N52del2	aAC	a--	28	28	AY.29	0.000442
ORF7a	52	N52del	AAC	---	28	28	AY.42	0.001126
ORF7a	52	N52del	AAC	---	27	27	AY.119	0.000953
ORF7a	52	N52V	AAC	GTT	21	26	All	0.000004
ORF7a	52	N52V	AAC	GTA	4	26	All	0.000001
ORF7a	52	N52V	AAc	GTc	1	26	All	0
ORF7a	52	N52N	aaC	aaT	26	26	AY.5	0.000537
ORF7a	52	N52del	AAC	---	26	26	B.1.526	0.000611
ORF7a	52	N52del2	aAC	a--	25	25	AY.118	0.001566
ORF7a	52	N52N	aaC	aaT	25	25	AY.4.2	0.000542
ORF7a	52	N52N	aaC	aaT	25	25	R.1	0.00225
ORF7a	52	N52del	AAC	---	24	24	B.1.1.214	0.001331
ORF7a	52	N52N	aaC	aaT	24	24	B.1.1.50	0.016293
ORF7a	52	N52N	aaC	aaT	23	23	B.1.1.1	0.007514
ORF7a	52	N52del	AAC	---	23	23	B.1.234	0.003035
ORF7a	52	N52R	aAC	aGA	16	22	All	0.000003
ORF7a	52	N52R	aAC	aGG	3	22	All	0.000001
ORF7a	52	N52R	AAC	CGA	2	22	All	0
ORF7a	52	N52R	AAC	CGT	1	22	All	0
ORF7a	52	N52D	Aac	Gac	22	22	AY.20	0.000855
ORF7a	52	N52del2	aAC	a--	22	22	AY.44	0.000134
ORF7a	52	N52N	aaC	aaT	21	21	AY.26	0.000595
ORF7a	52	N52K	aaC	aaA	20	21	B.1.617.2	0.000075
ORF7a	52	N52K	aaC	aaG	1	21	B.1.617.2	0.000004
ORF7a	52	N52Y	Aac	Tac	11	20	AY.25	0.000066
ORF7a	52	N52Y	AaC	TaT	9	20	AY.25	0.000054
ORF7a	52	N52del	AAC	---	20	20	AY.7.2	0.011186
ORF7a	52	N52K	aaC	aaA	18	19	AY.100	0.000828
ORF7a	52	N52K	aaC	aaG	1	19	AY.100	0.000046
ORF7a	52	N52N	aaC	aaT	19	19	AY.47	0.000591
ORF7a	52	N52X	AaC	TaA	9	18	All	0.000002
ORF7a	52	N52X	AAC	TGA	8	18	All	0.000002
ORF7a	52	N52X	AaC	TaG	1	18	All	0
ORF7a	52	N52del2	aAC	a--	18	18	AY.26	0.00051
ORF7a	52	N52del2	aAC	a--	18	18	AY.3	0.000179
ORF7a	52	N52del	AAC	---	18	18	AY.75	0.001008
ORF7a	52	N52del	AAC	---	18	18	B.1.177	0.000237
ORF7a	52	N52N	aaC	aaT	18	18	B.1.311	0.004942
ORF7a	52	N52del	AAC	---	18	18	B.1.351	0.000535
ORF7a	52	N52del	AAC	---	17	17	AY.5	0.000351
ORF7a	52	N52N	aaC	aaT	17	17	B.1.177.86	0.003119
ORF7a	52	N52N	aaC	aaT	17	17	B.1.258	0.001131
ORF7a	52	N52N	aaC	aaT	17	17	B.1.36	0.00248
ORF7a	52	N52del	AAC	---	17	17	P.1	0.000268
ORF7a	52	N52F	AAC	TTT	15	16	All	0.000003
ORF7a	52	N52F	AAc	TTc	1	16	All	0
ORF7a	52	N52I	aAC	aTA	7	16	AY.25	0.000042
ORF7a	52	N52I	aAC	aTT	7	16	AY.25	0.000042
ORF7a	52	N52I	aAc	aTc	2	16	AY.25	0.000012
ORF7a	52	N52N	aaC	aaT	16	16	AY.39	0.000395
ORF7a	52	N52N	aaC	aaT	16	16	AY.92	0.004596
ORF7a	52	N52N	aaC	aaT	16	16	B.1.160	0.000499
ORF7a	52	N52D	Aac	Gac	16	16	B.1.177.7	0.002638
ORF7a	52	N52V	AAC	GTT	16	16	B.1.617.2	0.00006
ORF7a	52	N52N	aaC	aaT	16	16	B.1.637	0.001169
ORF7a	52	N52N	aaC	aaT	15	15	AY.11	0.02008
ORF7a	52	N52N	aaC	aaT	15	15	AY.120.1	0.004815
ORF7a	52	N52del	AAC	---	15	15	AY.20	0.000583
ORF7a	52	N52N	aaC	aaT	15	15	AY.46	0.001561
ORF7a	52	N52N	aaC	aaT	15	15	C.37	0.001741
ORF7a	52	N52N	aaC	aaT	14	14	AY.1	0.00554
ORF7a	52	N52N	aaC	aaT	14	14	AY.100	0.000644
ORF7a	52	N52L	AAC	TTA	9	14	AY.25	0.000054
ORF7a	52	N52X	AaC	TaA	7	14	AY.25	0.000042
ORF7a	52	N52X	AAC	TGA	6	14	AY.25	0.000036
ORF7a	52	N52L	AAC	CTA	3	14	AY.25	0.000018
ORF7a	52	N52L	AAC	CTT	2	14	AY.25	0.000012
ORF7a	52	N52X	AaC	TaG	1	14	AY.25	0.000006
ORF7a	52	N52N	aaC	aaT	14	14	B.1.1.214	0.000776
ORF7a	52	N52N	aaC	aaT	14	14	B.1.234	0.001847
ORF7a	52	N52N	aaC	aaT	14	14	B.1.526	0.000329
ORF7a	52	N52del	AAC	---	14	14	B.1.637	0.001023
ORF7a	52	N52del	AAC	---	14	14	C.37	0.001625
ORF7a	52	N52K	aaC	aaA	12	13	AY.25	0.000072
ORF7a	52	N52K	aaC	aaG	1	13	AY.25	0.000006
ORF7a	52	N52del	AAC	---	13	13	AY.68	0.003559
ORF7a	52	N52del2	aAC	a--	13	13	B.1.177	0.000171
ORF7a	52	N52N	aaC	aaT	13	13	B.1.258.17	0.001352
ORF7a	52	N52del	AAC	---	12	12	AY.121	0.001624
ORF7a	52	N52del	AAC	---	12	12	AY.23	0.000837
ORF7a	52	N52del	AAC	---	12	12	AY.98.1	0.000581
ORF7a	52	N52del	AAC	---	12	12	B.1.324	0.019262
ORF7a	52	N52K	aaC	aaG	12	12	B.1.526	0.000282
ORF7a	52	N52del	AAC	---	12	12	B.1.596	0.001046
ORF7a	52	N52del	AAC	---	11	11	AY.106	0.003684
ORF7a	52	N52del	AAC	---	11	11	AY.110	0.00124
ORF7a	52	N52N	aaC	aaT	11	11	AY.120	0.000409
ORF7a	52	N52del	AAC	---	11	11	AY.120.1	0.003531
ORF7a	52	N52del	AAC	---	11	11	AY.37	0.003477
ORF7a	52	N52N	aaC	aaT	11	11	AY.46.1	0.011294
ORF7a	52	N52N	aaC	aaT	11	11	B.1.1.519	0.000437
ORF7a	52	N52N	aaC	aaT	11	11	B.1.221	0.000781
ORF7a	52	N52N	aaC	aaT	11	11	B.1.351	0.000327
ORF7a	52	N52S	aAc	aGc	11	11	D.2	0.000825
ORF7a	52	N52C	AAC	TGT	9	10	All	0.000002
ORF7a	52	N52C	AAc	TGc	1	10	All	0
ORF7a	52	N52D	Aac	Gac	10	10	AY.102	0.000265
ORF7a	52	N52del	AAC	---	10	10	AY.118	0.000626
ORF7a	52	N52del2	aAC	a--	10	10	AY.120	0.000372
ORF7a	52	N52N	aaC	aaT	10	10	AY.20	0.000389
ORF7a	52	N52V	AAC	GTT	5	10	AY.25	0.00003
ORF7a	52	N52S	aAC	aGT	5	10	AY.25	0.00003
ORF7a	52	N52V	AAC	GTA	4	10	AY.25	0.000024
ORF7a	52	N52S	AAC	TCT	2	10	AY.25	0.000012
ORF7a	52	N52S	aAc	aGc	2	10	AY.25	0.000012
ORF7a	52	N52V	AAc	GTc	1	10	AY.25	0.000006
ORF7a	52	N52S	AAC	TCA	1	10	AY.25	0.000006
ORF7a	52	N52del1	aaC	aa-	8	10	AY.4	0.000012
ORF7a	52	N52del1	Aac	-ac	2	10	AY.4	0.000003
ORF7a	52	N52del	AAC	---	10	10	AY.46.2	0.006353
ORF7a	52	N52del1	aaC	aa-	8	10	B.1.1.7	0.000007
ORF7a	52	N52del1	Aac	-ac	2	10	B.1.1.7	0.000002
ORF7a	52	N52N	aaC	aaT	10	10	B.1.177.60	0.002184
ORF7a	52	N52del	AAC	---	10	10	B.1.243	0.000696
ORF7a	52	N52N	aaC	aaT	10	10	B.1.427	0.000505
ORF7a	52	N52S	aAc	aGc	10	10	P.1.10	0.002695
ORF7a	52	N52del	AAC	---	10	10	R.1	0.0009
ORF7a	52	N52K	aaC	aaA	9	9	AY.103	0.000056
ORF7a	52	N52N	aaC	aaT	9	9	AY.106	0.003014
ORF7a	52	N52del2	aAC	a--	9	9	AY.12	0.002845
ORF7a	52	N52N	aaC	aaT	9	9	AY.121	0.001218
ORF7a	52	N52F	AAC	TTT	9	9	AY.25	0.000054
ORF7a	52	N52R	aAC	aGA	5	9	AY.25	0.00003
ORF7a	52	N52R	AAC	CGA	2	9	AY.25	0.000012
ORF7a	52	N52R	aAC	aGG	1	9	AY.25	0.000006
ORF7a	52	N52R	AAC	CGT	1	9	AY.25	0.000006
ORF7a	52	N52K	aaC	aaA	9	9	AY.29	0.000142
ORF7a	52	N52D	Aac	Gac	9	9	AY.4	0.000014
ORF7a	52	N52R	aAC	aGA	9	9	AY.4	0.000014
ORF7a	52	N52del	AAC	---	9	9	AY.4.2	0.000195
ORF7a	52	N52K	aaC	aaA	8	9	AY.43	0.000035
ORF7a	52	N52K	aaC	aaG	1	9	AY.43	0.000004
ORF7a	52	N52del	AAC	---	9	9	AY.45	0.001095
ORF7a	52	N52del	AAC	---	9	9	AY.6	0.00037
ORF7a	52	N52N	aaC	aaT	9	9	AY.61	0.000943
ORF7a	52	N52del2	aAC	a--	9	9	AY.99	0.009444
ORF7a	52	N52N	aaC	aaT	9	9	B.1.617.1	0.001161
ORF7a	52	N52I	aAC	aTT	4	9	B.1.617.2	0.000015
ORF7a	52	N52I	aAc	aTc	4	9	B.1.617.2	0.000015
ORF7a	52	N52I	aAC	aTA	1	9	B.1.617.2	0.000004
ORF7a	52	N52del	AAC	---	9	9	L.1	0.017143
ORF7a	52	N52N	aaC	aaT	9	9	P.3	0.014354
ORF7a	52	N52H	Aac	Cac	6	8	All	0.000001
ORF7a	52	N52H	AaC	CaT	2	8	All	0
ORF7a	52	N52del1	aaC	aa-	8	8	AY.103	0.00005
ORF7a	52	N52del	AAC	---	8	8	AY.113	0.001139
ORF7a	52	N52N	aaC	aaT	8	8	AY.113	0.001139
ORF7a	52	N52del	AAC	---	8	8	AY.116	0.002294
ORF7a	52	N52del	AAC	---	8	8	AY.117	0.000676
ORF7a	52	N52del	AAC	---	8	8	AY.30	0.003166
ORF7a	52	N52del	AAC	---	8	8	AY.34	0.000776
ORF7a	52	N52del1	Aac	-ac	8	8	AY.35	0.001864
ORF7a	52	N52K	aaC	aaA	8	8	AY.4	0.000012
ORF7a	52	N52del2	aAC	a--	8	8	AY.5	0.000165
ORF7a	52	N52N	aaC	aaT	8	8	AY.9.2	0.000294
ORF7a	52	N52N	aaC	aaT	8	8	AY.98	0.000632
ORF7a	52	N52del	AAC	---	8	8	AY.98	0.000632
ORF7a	52	N52N	aaC	aaT	8	8	B.1.1.192	0.018476
ORF7a	52	N52del	AAC	---	8	8	B.1.1.231	0.024768
ORF7a	52	N52K	aaC	aaA	8	8	B.1.258.17	0.000832
ORF7a	52	N52N	aaC	aaT	8	8	B.1.480	0.0199
ORF7a	52	N52N	aaC	aaT	8	8	B.1.596	0.000697
ORF7a	52	N52N	aaC	aaT	8	8	B.1.621	0.000708
ORF7a	52	N52del1	Aac	-ac	7	8	P.1	0.00011
ORF7a	52	N52del1	aaC	aa-	1	8	P.1	0.000016
ORF7a	52	N52N	aaC	aaT	8	8	P.1.10	0.002156
ORF7a	52	N52G	AAC	GGG	2	7	All	0
ORF7a	52	N52G	AAc	GGc	2	7	All	0
ORF7a	52	N52G	AAC	GGA	2	7	All	0
ORF7a	52	N52G	AAC	GGT	1	7	All	0
ORF7a	52	N52del	AAC	---	7	7	AY.109	0.005178
ORF7a	52	N52C	AAC	TGT	7	7	AY.25	0.000042
ORF7a	52	N52N	aaC	aaT	7	7	AY.36	0.001037
ORF7a	52	N52D	Aac	Gac	7	7	AY.39	0.000173
ORF7a	52	N52del	AAC	---	7	7	AY.39.1	0.000277
ORF7a	52	N52N	aaC	aaT	7	7	AY.4.5	0.000752
ORF7a	52	N52del2	aAC	a--	7	7	AY.7.1	0.000789
ORF7a	52	N52N	aaC	aaT	7	7	AY.84	0.003062
ORF7a	52	N52N	aaC	aaT	7	7	AY.99.2	0.000645
ORF7a	52	N52N	aaC	aaT	7	7	B.1.1.222	0.001428
ORF7a	52	N52del2	aAC	a--	7	7	B.1.1.284	0.000752
ORF7a	52	N52del	AAC	---	7	7	B.1.160	0.000218
ORF7a	52	N52K	aaC	aaA	7	7	B.1.177	0.000092
ORF7a	52	N52del	AAC	---	7	7	B.1.525	0.000792
ORF7a	52	N52F	AAC	TTT	6	7	B.1.617.2	0.000023
ORF7a	52	N52D	Aac	Gac	4	7	B.1.617.2	0.000015
ORF7a	52	N52D	AaC	GaT	3	7	B.1.617.2	0.000011
ORF7a	52	N52F	AAc	TTc	1	7	B.1.617.2	0.000004
ORF7a	52	N52Y	Aac	Tac	7	7	B.1.634	0.023973
ORF7a	52	N52Y	Aac	Tac	7	7	C.36	0.006375
ORF7a	52	N52del2	aAC	a--	7	7	P.1	0.00011
ORF7a	52	N52del	AAC	---	7	7	P.1.15	0.001626
ORF7a	52	N52del2	aAC	a--	6	6	AY.10	0.00318
ORF7a	52	N52del2	aAC	a--	6	6	AY.102	0.000159
ORF7a	52	N52N	aaC	aaT	6	6	AY.119	0.000212
ORF7a	52	N52del2	aAC	a--	5	6	AY.119	0.000177
ORF7a	52	N52del2	AAc	--c	1	6	AY.119	0.000035
ORF7a	52	N52N	aaC	aaT	6	6	AY.23	0.000418
ORF7a	52	N52del1	aaC	aa-	4	6	AY.25	0.000024
ORF7a	52	N52del1	Aac	-ac	2	6	AY.25	0.000012
ORF7a	52	N52del	AAC	---	6	6	AY.33	0.000401
ORF7a	52	N52del2	aAC	a--	6	6	AY.39	0.000148
ORF7a	52	N52I	aAc	aTc	6	6	AY.44	0.000037
ORF7a	52	N52T	aAc	aCc	6	6	B.1	0.000055
ORF7a	52	N52N	aaC	aaT	6	6	B.1.1.25	0.003411
ORF7a	52	N52del2	aAC	a--	6	6	B.1.1.3	0.052174
ORF7a	52	N52N	aaC	aaT	6	6	B.1.1.63	0.002315
ORF7a	52	N52S	aAc	aGc	5	6	B.1.1.7	0.000004
ORF7a	52	N52S	aAC	aGT	1	6	B.1.1.7	0.000001
ORF7a	52	N52del	AAC	---	6	6	B.1.429	0.000141
ORF7a	52	N52N	aaC	aaT	6	6	B.1.438.1	0.000644
ORF7a	52	N52S	aAc	aGc	4	6	B.1.617.2	0.000015
ORF7a	52	N52S	AAC	TCT	1	6	B.1.617.2	0.000004
ORF7a	52	N52S	AAc	TCc	1	6	B.1.617.2	0.000004
ORF7a	52	N52del2	aAC	a--	5	5	AY.100	0.00023
ORF7a	52	N52del	AAC	---	5	5	AY.14	0.00044
ORF7a	52	N52N	aaC	aaT	5	5	AY.23.1	0.002087
ORF7a	52	N52D	AaC	GaT	3	5	AY.25	0.000018
ORF7a	52	N52D	Aac	Gac	2	5	AY.25	0.000012
ORF7a	52	N52del	AAC	---	5	5	AY.35	0.001165
ORF7a	52	N52D	Aac	Gac	5	5	AY.44	0.00003
ORF7a	52	N52N	aaC	aaT	5	5	AY.45	0.000608
ORF7a	52	N52del	AAC	---	5	5	AY.46.1	0.005133
ORF7a	52	N52N	aaC	aaT	5	5	AY.5.3	0.001687
ORF7a	52	N52del	AAC	---	5	5	AY.61	0.000524
ORF7a	52	N52N	aaC	aaT	5	5	AY.75	0.00028
ORF7a	52	N52del	AAC	---	5	5	AY.88	0.004421
ORF7a	52	N52del	AAC	---	5	5	AY.9.1	0.000419
ORF7a	52	N52del	AAC	---	5	5	AY.91	0.003652
ORF7a	52	N52del2	aAC	a--	5	5	AY.98.1	0.000242
ORF7a	52	N52del	AAC	---	5	5	B.1.1	0.000091
ORF7a	52	N52N	aaC	aaT	5	5	B.1.1.306	0.002192
ORF7a	52	N52del	AAC	---	5	5	B.1.1.56	0.089286
ORF7a	52	N52N	aaC	aaT	5	5	B.1.400	0.002145
ORF7a	52	N52del1	aaC	aa-	5	5	B.1.617.2	0.000019
ORF7a	52	N52T	aAc	aCc	3	5	B.1.617.2	0.000011
ORF7a	52	N52T	aAC	aCT	1	5	B.1.617.2	0.000004
ORF7a	52	N52T	aAC	aCA	1	5	B.1.617.2	0.000004
ORF7a	52	N52N	aaC	aaT	5	5	Q.4	0.002274
ORF7a	52	N52del2	aAC	a--	4	4	AY.107	0.001864
ORF7a	52	N52del	AAC	---	4	4	AY.107	0.001864
ORF7a	52	N52del	AAC	---	4	4	AY.111	0.000733
ORF7a	52	N52N	aaC	aaT	4	4	AY.117	0.000338
ORF7a	52	N52del2	aAC	a--	4	4	AY.14	0.000352
ORF7a	52	N52del2	aAC	a--	4	4	AY.24	0.001724
ORF7a	52	N52K	aaC	aaA	4	4	AY.3	0.00004
ORF7a	52	N52del2	aAC	a--	4	4	AY.33	0.000267
ORF7a	52	N52N	aaC	aaT	4	4	AY.4.2.1	0.000596
ORF7a	52	N52del	AAC	---	4	4	AY.4.5	0.00043
ORF7a	52	N52N	aaC	aaT	4	4	AY.42	0.000161
ORF7a	52	N52N	aaC	aaT	4	4	AY.46.6	0.000289
ORF7a	52	N52N	aaC	aaT	4	4	AY.6	0.000165
ORF7a	52	N52del	AAC	---	4	4	AY.66	0.004278
ORF7a	52	N52del	AAC	---	4	4	AY.74	0.000463
ORF7a	52	N52N	aaC	aaT	4	4	AY.81	0.007968
ORF7a	52	N52del	AAC	---	4	4	AY.85	0.001709
ORF7a	52	N52N	aaC	aaT	4	4	AY.9.1	0.000335
ORF7a	52	N52del	AAC	---	4	4	AY.9.2	0.000147
ORF7a	52	N52N	aaC	aaT	4	4	AY.95	0.003044
ORF7a	52	N52del	AAC	---	4	4	AY.99	0.004197
ORF7a	52	N52N	aaC	aaT	4	4	B.1.1.159	0.018692
ORF7a	52	N52N	aaC	aaT	4	4	B.1.1.41	0.025316
ORF7a	52	N52N	aaC	aaT	4	4	B.1.1.434	0.001394
ORF7a	52	N52I	aAC	aTT	3	4	B.1.1.7	0.000003
ORF7a	52	N52T	aAc	aCc	3	4	B.1.1.7	0.000003
ORF7a	52	N52T	aAC	aCT	1	4	B.1.1.7	0.000001
ORF7a	52	N52I	aAc	aTc	1	4	B.1.1.7	0.000001
ORF7a	52	N52N	aaC	aaT	4	4	B.1.1.71	0.024242
ORF7a	52	N52X	AaC	TaA	2	4	B.1.177.21	0.000153
ORF7a	52	N52X	AAC	TGA	2	4	B.1.177.21	0.000153
ORF7a	52	N52N	aaC	aaT	4	4	B.1.177.23	0.012945
ORF7a	52	N52N	aaC	aaT	4	4	B.1.177.52	0.00703
ORF7a	52	N52del1	Aac	-ac	2	4	B.1.2	0.000018
ORF7a	52	N52del1	AAC	-NN	1	4	B.1.2	0.000009
ORF7a	52	N52del1	aaC	aa-	1	4	B.1.2	0.000009
ORF7a	52	N52N	aaC	aaT	4	4	B.1.361	0.005155
ORF7a	52	N52N	aaC	aaT	4	4	B.1.362	0.006163
ORF7a	52	N52del	AAC	---	4	4	B.1.427	0.000202
ORF7a	52	N52K	aaC	aaA	3	4	B.1.429	0.000071
ORF7a	52	N52K	aaC	aaG	1	4	B.1.429	0.000024
ORF7a	52	N52N	aaC	aaT	4	4	P.6	0.012579
ORF7a	52	N52del	AAC	---	3	3	A	0.001161
ORF7a	52	N52Q	AaC	CaA	2	3	All	0
ORF7a	52	N52P	AAC	CCA	1	3	All	0
ORF7a	52	N52P	AAC	CCT	1	3	All	0
ORF7a	52	N52P	AAc	CCc	1	3	All	0
ORF7a	52	N52Q	AaC	CaG	1	3	All	0
ORF7a	52	N52D	Aac	Gac	3	3	AY.103	0.000019
ORF7a	52	N52del2	aAC	a--	3	3	AY.110	0.000338
ORF7a	52	N52del	AAC	---	3	3	AY.114	0.000693
ORF7a	52	N52del2	aAC	a--	3	3	AY.117	0.000254
ORF7a	52	N52N	aaC	aaT	3	3	AY.118	0.000188
ORF7a	52	N52del2	aAC	a--	3	3	AY.23	0.000209
ORF7a	52	N52G	AAC	GGA	2	3	AY.25	0.000012
ORF7a	52	N52T	aAC	aCA	1	3	AY.25	0.000006
ORF7a	52	N52G	AAC	GGT	1	3	AY.25	0.000006
ORF7a	52	N52T	aAC	aCT	1	3	AY.25	0.000006
ORF7a	52	N52T	aAc	aCc	1	3	AY.25	0.000006
ORF7a	52	N52del1	Aac	-ac	2	3	AY.26	0.000057
ORF7a	52	N52del1	aaC	aa-	1	3	AY.26	0.000028
ORF7a	52	N52del	AAC	---	3	3	AY.29.1	0.000662
ORF7a	52	N52N	aaC	aaT	3	3	AY.33	0.0002
ORF7a	52	N52del	AAC	---	3	3	AY.34.1	0.00153
ORF7a	52	N52del	AAC	---	3	3	AY.40	0.002893
ORF7a	52	N52del1	aaC	aa-	3	3	AY.44	0.000018
ORF7a	52	N52del	AAC	---	3	3	AY.46	0.000312
ORF7a	52	N52del2	aAC	a--	3	3	AY.46.6	0.000217
ORF7a	52	N52del2	aAC	a--	3	3	AY.47	0.000093
ORF7a	52	N52del	AAC	---	3	3	AY.53	0.000863
ORF7a	52	N52N	aaC	aaT	3	3	AY.78	0.004622
ORF7a	52	N52del	AAC	---	3	3	AY.84	0.001312
ORF7a	52	N52N	aaC	aaT	3	3	AY.85	0.001282
ORF7a	52	N52del1	aaC	aa-	3	3	AY.90	0.002053
ORF7a	52	N52del	AAC	---	3	3	AY.92	0.000862
ORF7a	52	N52N	aaC	aaT	3	3	AZ.2	0.002463
ORF7a	52	N52del	AAC	---	3	3	B.1.1.121	0.007282
ORF7a	52	N52del	AAC	---	3	3	B.1.1.25	0.001706
ORF7a	52	N52N	aaC	aaT	3	3	B.1.1.298	0.002586
ORF7a	52	N52del	AAC	---	3	3	B.1.1.519	0.000119
ORF7a	52	N52N	aaC	aaT	3	3	B.1.177.53	0.007177
ORF7a	52	N52N	aaC	aaT	3	3	B.1.177.73	0.001699
ORF7a	52	N52del	AAC	---	3	3	B.1.214.2	0.001799
ORF7a	52	N52del	AAC	---	3	3	B.1.258.17	0.000312
ORF7a	52	N52N	aaC	aaT	3	3	B.1.349	0.002144
ORF7a	52	N52N	aaC	aaT	3	3	B.1.396	0.002117
ORF7a	52	N52N	aaC	aaT	3	3	B.1.466.2	0.001174
ORF7a	52	N52N	aaC	aaT	3	3	B.1.470	0.004213
ORF7a	52	N52del	AAC	---	3	3	B.1.582	0.001472
ORF7a	52	N52N	aaC	aaT	3	3	B.1.599	0.010949
ORF7a	52	N52Y	AaC	TaT	3	3	B.1.617.2	0.000011
ORF7a	52	N52L	AAC	CTT	2	3	B.1.617.2	0.000008
ORF7a	52	N52C	AAC	TGT	2	3	B.1.617.2	0.000008
ORF7a	52	N52C	AAc	TGc	1	3	B.1.617.2	0.000004
ORF7a	52	N52L	AAC	CTA	1	3	B.1.617.2	0.000004
ORF7a	52	N52del	AAC	---	3	3	B.1.626	0.017143
ORF7a	52	N52N	aaC	aaT	3	3	D.2	0.000225
ORF7a	52	N52S	aAc	aGc	3	3	P.1.1	0.000953
ORF7a	52	N52N	aaC	aaT	3	3	P.1.12	0.001452
ORF7a	52	N52del	AAC	---	3	3	P.1.14	0.000143
ORF7a	52	N52N	aaC	aaT	3	3	Q.3	0.000435
ORF7a	52	N52N	aaC	aaT	3	3	Q.8	0.000495
ORF7a	52	N52Y	Aac	Tac	2	2		0.111111
ORF7a	52	N52T	aAc	aCc	2	2		0.111111
ORF7a	52	N52S	AAc	TCc	2	2		0.111111
ORF7a	52	N52G	AAC	GGG	2	2		0.111111
ORF7a	52	N52del	AAC	---	2	2	A.28	0.005291
ORF7a	52	N52del	AAC	---	2	2	AY.1	0.000791
ORF7a	52	N52D	Aac	Gac	2	2	AY.100	0.000092
ORF7a	52	N52I	aAc	aTc	2	2	AY.102	0.000053
ORF7a	52	N52N	aaC	aaT	2	2	AY.105	0.001286
ORF7a	52	N52del	AAC	---	2	2	AY.108	0.002205
ORF7a	52	N52del1	aaC	aa-	2	2	AY.109	0.001479
ORF7a	52	N52S	aAC	aGT	1	2	AY.119	0.000035
ORF7a	52	N52S	aAc	aGc	1	2	AY.119	0.000035
ORF7a	52	N52N	aaC	aaT	2	2	AY.12	0.000632
ORF7a	52	N52del	AAC	---	2	2	AY.13	0.000322
ORF7a	52	N52del	AAC	---	2	2	AY.19	0.002281
ORF7a	52	N52del	AAC	---	2	2	AY.24	0.000862
ORF7a	52	N52P	AAC	CCT	1	2	AY.25	0.000006
ORF7a	52	N52P	AAC	CCA	1	2	AY.25	0.000006
ORF7a	52	N52H	Aac	Cac	2	2	AY.3	0.00002
ORF7a	52	N52del1	aaC	aa-	2	2	AY.3	0.00002
ORF7a	52	N52S	aAc	aGc	2	2	AY.3	0.00002
ORF7a	52	N52N	aaC	aaT	2	2	AY.32	0.001065
ORF7a	52	N52Y	Aac	Tac	2	2	AY.33	0.000134
ORF7a	52	N52N	aaC	aaT	2	2	AY.34	0.000194
ORF7a	52	N52del2	aAC	a--	2	2	AY.34	0.000194
ORF7a	52	N52N	aaC	aaT	2	2	AY.34.1	0.00102
ORF7a	52	N52del	AAC	---	2	2	AY.36	0.000296
ORF7a	52	N52del2	aAC	a--	2	2	AY.36	0.000296
ORF7a	52	N52K	aaC	aaG	2	2	AY.39.1	0.000079
ORF7a	52	N52S	aAc	aGc	2	2	AY.4	0.000003
ORF7a	52	N52I	aAc	aTc	2	2	AY.4	0.000003
ORF7a	52	N52del2	aAC	a--	2	2	AY.4.2	0.000043
ORF7a	52	N52del	AAC	---	2	2	AY.4.2.1	0.000298
ORF7a	52	N52del2	aAC	a--	2	2	AY.42	0.00008
ORF7a	52	N52K	aaC	aaA	2	2	AY.44	0.000012
ORF7a	52	N52del	AAC	---	2	2	AY.5.3	0.000675
ORF7a	52	N52N	aaC	aaT	2	2	AY.54	0.000191
ORF7a	52	N52del	AAC	---	2	2	AY.57	0.001312
ORF7a	52	N52D	Aac	Gac	2	2	AY.57	0.001312
ORF7a	52	N52del	AAC	---	2	2	AY.7	0.000392
ORF7a	52	N52del	AAC	---	2	2	AY.7.1	0.000225
ORF7a	52	N52del	AAC	---	2	2	AY.73	0.001331
ORF7a	52	N52N	aaC	aaT	2	2	AY.75.1	0.000361
ORF7a	52	N52D	Aac	Gac	2	2	AY.77	0.002255
ORF7a	52	N52del2	aAC	a--	2	2	AY.88	0.001768
ORF7a	52	N52del	AAC	---	2	2	AY.9	0.000135
ORF7a	52	N52N	aaC	aaT	2	2	AY.9	0.000135
ORF7a	52	N52del2	aAC	a--	2	2	AY.9.1	0.000167
ORF7a	52	N52del2	aAC	a--	2	2	AY.98	0.000158
ORF7a	52	N52K	aaC	aaA	2	2	AY.99.2	0.000184
ORF7a	52	N52del	AAC	---	2	2	AY.99.2	0.000184
ORF7a	52	N52del2	aAC	a--	2	2	AY.99.2	0.000184
ORF7a	52	N52N	aaC	aaT	2	2	B	0.000256
ORF7a	52	N52S	aAc	aGc	2	2	B.1	0.000018
ORF7a	52	N52K	aaC	aaG	1	2	B.1	0.000009
ORF7a	52	N52K	aaC	aaA	1	2	B.1	0.000009
ORF7a	52	N52N	aaC	aaT	2	2	B.1.1.174	0.006757
ORF7a	52	N52N	aaC	aaT	2	2	B.1.1.230	0.018349
ORF7a	52	N52N	aaC	aaT	2	2	B.1.1.265	0.006309
ORF7a	52	N52N	aaC	aaT	2	2	B.1.1.28	0.000622
ORF7a	52	N52del	AAC	---	2	2	B.1.1.318	0.000604
ORF7a	52	N52N	aaC	aaT	2	2	B.1.1.318	0.000604
ORF7a	52	N52N	aaC	aaT	2	2	B.1.1.33	0.000842
ORF7a	52	N52N	aaC	aaT	2	2	B.1.1.34	0.026316
ORF7a	52	N52N	aaC	aaT	2	2	B.1.1.354	0.008772
ORF7a	52	N52K	aaC	aaA	2	2	B.1.1.37	0.000386
ORF7a	52	N52N	aaC	aaT	2	2	B.1.1.397	0.004505
ORF7a	52	N52Y	AaC	TaT	1	2	B.1.1.7	0.000001
ORF7a	52	N52Y	Aac	Tac	1	2	B.1.1.7	0.000001
ORF7a	52	N52K	aaC	aaA	2	2	B.1.126	0.002551
ORF7a	52	N52N	aaC	aaT	2	2	B.1.147	0.001512
ORF7a	52	N52N	aaC	aaT	2	2	B.1.177.2	0.009091
ORF7a	52	N52N	aaC	aaT	2	2	B.1.177.21	0.000153
ORF7a	52	N52del	AAC	---	2	2	B.1.177.43	0.002954
ORF7a	52	N52N	aaC	aaT	2	2	B.1.177.47	0.025974
ORF7a	52	N52del	AAC	---	2	2	B.1.177.81	0.000379
ORF7a	52	N52del	AAC	---	2	2	B.1.177.86	0.000367
ORF7a	52	N52T	aAc	aCc	2	2	B.1.2	0.000018
ORF7a	52	N52D	Aac	Gac	1	2	B.1.2	0.000009
ORF7a	52	N52del2	aAC	a--	1	2	B.1.2	0.000009
ORF7a	52	N52D	AaC	GaT	1	2	B.1.2	0.000009
ORF7a	52	N52del2	AAc	--c	1	2	B.1.2	0.000009
ORF7a	52	N52N	aaC	aaT	2	2	B.1.214.2	0.001199
ORF7a	52	N52N	aaC	aaT	2	2	B.1.241	0.001623
ORF7a	52	N52del	AAC	---	2	2	B.1.258.11	0.000793
ORF7a	52	N52N	aaC	aaT	2	2	B.1.301	0.011834
ORF7a	52	N52del2	aAC	a--	2	2	B.1.351	0.000059
ORF7a	52	N52del	AAC	---	2	2	B.1.351.2	0.000605
ORF7a	52	N52N	aaC	aaT	2	2	B.1.36.17	0.000988
ORF7a	52	N52del	AAC	---	2	2	B.1.375	0.001639
ORF7a	52	N52N	aaC	aaT	2	2	B.1.525	0.000226
ORF7a	52	N52N	aaC	aaT	2	2	B.1.564.1	0.003155
ORF7a	52	N52N	aaC	aaT	2	2	B.1.565	0.001621
ORF7a	52	N52N	aaC	aaT	2	2	B.1.568	0.002222
ORF7a	52	N52del	AAC	---	2	2	B.1.575	0.000607
ORF7a	52	N52T	aAc	aCc	1	2	B.1.588	0.00091
ORF7a	52	N52T	aAC	aCA	1	2	B.1.588	0.00091
ORF7a	52	N52N	aaC	aaT	2	2	B.1.595	0.000522
ORF7a	52	N52del	AAC	---	2	2	B.1.621.1	0.001012
ORF7a	52	N52N	aaC	aaT	2	2	B.1.623	0.001073
ORF7a	52	N52N	aaC	aaT	2	2	B.1.8	0.003945
ORF7a	52	N52S	aAc	aGc	2	2	C.14	0.008658
ORF7a	52	N52N	aaC	aaT	2	2	C.16	0.002121
ORF7a	52	N52K	aaC	aaA	2	2	P.1.14	0.000096
ORF7a	52	N52N	aaC	aaT	2	2	P.1.15	0.000465
ORF7a	52	N52del	AAC	---	2	2	P.2	0.000373
ORF7a	52	N52N	aaC	aaT	2	2	P.2	0.000373
ORF7a	52	N52del1	aaC	aa-	1	1	A	0.000387
ORF7a	52	N52del	AAC	---	1	1	A.1	0.000282
ORF7a	52	N52N	aaC	aaT	1	1	A.23.1	0.000704
ORF7a	52	N52del	AAC	---	1	1	A.23.1	0.000704
ORF7a	52	N52N	aaC	aaT	1	1	A.27	0.001656
ORF7a	52	N52E	AaC	GaA	1	1	All	0
ORF7a	52	N52W	AAC	TGG	1	1	All	0
ORF7a	52	N52A	AAC	GCT	1	1	All	0
ORF7a	52	N52N	aaC	aaT	1	1	AU.1	0.001266
ORF7a	52	N52del2	aAC	a--	1	1	AY.1	0.000396
ORF7a	52	N52del	AAC	---	1	1	AY.101	0.00049
ORF7a	52	N52I	aAc	aTc	1	1	AY.103	0.000006
ORF7a	52	N52Y	Aac	Tac	1	1	AY.103	0.000006
ORF7a	52	N52H	Aac	Cac	1	1	AY.103	0.000006
ORF7a	52	N52D	Aac	Gac	1	1	AY.106	0.000335
ORF7a	52	N52del1	aaC	aa-	1	1	AY.107	0.000466
ORF7a	52	N52I	aAC	aTT	1	1	AY.110	0.000113
ORF7a	52	N52N	aaC	aaT	1	1	AY.111	0.000183
ORF7a	52	N52K	aaC	aaA	1	1	AY.113	0.000142
ORF7a	52	N52del2	aAC	a--	1	1	AY.113	0.000142
ORF7a	52	N52N	aaC	aaT	1	1	AY.114	0.000231
ORF7a	52	N52del	AAC	---	1	1	AY.116.1	0.000311
ORF7a	52	N52N	aaC	aaT	1	1	AY.116.1	0.000311
ORF7a	52	N52D	Aac	Gac	1	1	AY.117	0.000085
ORF7a	52	N52D	Aac	Gac	1	1	AY.118	0.000063
ORF7a	52	N52del1	aaC	aa-	1	1	AY.119	0.000035
ORF7a	52	N52K	aaC	aaG	1	1	AY.119	0.000035
ORF7a	52	N52Y	Aac	Tac	1	1	AY.119	0.000035
ORF7a	52	N52I	aAc	aTc	1	1	AY.120	0.000037
ORF7a	52	N52del1	aaC	aa-	1	1	AY.120	0.000037
ORF7a	52	N52del2	aAC	a--	1	1	AY.120.1	0.000321
ORF7a	52	N52N	aaC	aaT	1	1	AY.14	0.000088
ORF7a	52	N52del	AAC	---	1	1	AY.16	0.00038
ORF7a	52	N52N	aaC	aaT	1	1	AY.16	0.00038
ORF7a	52	N52Y	Aac	Tac	1	1	AY.20	0.000039
ORF7a	52	N52del2	aAC	a--	1	1	AY.20	0.000039
ORF7a	52	N52N	aaC	aaT	1	1	AY.22	0.002092
ORF7a	52	N52del	AAC	---	1	1	AY.22	0.002092
ORF7a	52	N52del1	aaC	aa-	1	1	AY.23	0.00007
ORF7a	52	N52N	aaC	aaT	1	1	AY.24	0.000431
ORF7a	52	N52W	AAC	TGG	1	1	AY.25	0.000006
ORF7a	52	N52A	AAC	GCT	1	1	AY.25	0.000006
ORF7a	52	N52H	AaC	CaT	1	1	AY.25	0.000006
ORF7a	52	N52Q	AaC	CaA	1	1	AY.25	0.000006
ORF7a	52	N52E	AaC	GaA	1	1	AY.25	0.000006
ORF7a	52	N52D	Aac	Gac	1	1	AY.26	0.000028
ORF7a	52	N52del	AAC	---	1	1	AY.27	0.000065
ORF7a	52	N52K	aaC	aaG	1	1	AY.27	0.000065
ORF7a	52	N52N	aaC	aaT	1	1	AY.27	0.000065
ORF7a	52	N52N	aaC	aaT	1	1	AY.28	0.00189
ORF7a	52	N52S	aAc	aGc	1	1	AY.29	0.000016
ORF7a	52	N52del1	Aac	-ac	1	1	AY.29	0.000016
ORF7a	52	N52del2	aAC	a--	1	1	AY.29.1	0.000221
ORF7a	52	N52del2	aAC	a--	1	1	AY.3.1	0.000085
ORF7a	52	N52I	aAC	aTA	1	1	AY.3.1	0.000085
ORF7a	52	N52R	aAC	aGA	1	1	AY.3.1	0.000085
ORF7a	52	N52del1	aaC	aa-	1	1	AY.3.1	0.000085
ORF7a	52	N52D	Aac	Gac	1	1	AY.30	0.000396
ORF7a	52	N52N	aaC	aaT	1	1	AY.30	0.000396
ORF7a	52	N52D	Aac	Gac	1	1	AY.33	0.000067
ORF7a	52	N52K	aaC	aaA	1	1	AY.33	0.000067
ORF7a	52	N52N	aaC	aaT	1	1	AY.35	0.000233
ORF7a	52	N52N	aaC	aaT	1	1	AY.37	0.000316
ORF7a	52	N52del1	aaC	aa-	1	1	AY.38	0.000499
ORF7a	52	N52I	aAc	aTc	1	1	AY.39	0.000025
ORF7a	52	N52Y	Aac	Tac	1	1	AY.39	0.000025
ORF7a	52	N52del2	aAC	a--	1	1	AY.39.1	0.00004
ORF7a	52	N52N	aaC	aaT	1	1	AY.39.1	0.00004
ORF7a	52	N52S	aAc	aGc	1	1	AY.39.1	0.00004
ORF7a	52	N52N	aaC	aaT	1	1	AY.39.1.1	0.000725
ORF7a	52	N52N	aaC	aaT	1	1	AY.39.2	0.001541
ORF7a	52	N52T	aAc	aCc	1	1	AY.4	0.000002
ORF7a	52	N52Y	Aac	Tac	1	1	AY.4	0.000002
ORF7a	52	N52del2	aAC	a--	1	1	AY.4.4	0.000409
ORF7a	52	N52N	aaC	aaT	1	1	AY.4.4	0.000409
ORF7a	52	N52del2	aAC	a--	1	1	AY.4.5	0.000107
ORF7a	52	N52D	Aac	Gac	1	1	AY.43	0.000004
ORF7a	52	N52T	aAc	aCc	1	1	AY.43	0.000004
ORF7a	52	N52H	Aac	Cac	1	1	AY.43	0.000004
ORF7a	52	N52S	aAc	aGc	1	1	AY.43	0.000004
ORF7a	52	N52Y	Aac	Tac	1	1	AY.43	0.000004
ORF7a	52	N52S	aAc	aGc	1	1	AY.45	0.000122
ORF7a	52	N52D	Aac	Gac	1	1	AY.45	0.000122
ORF7a	52	N52I	aAc	aTc	1	1	AY.45	0.000122
ORF7a	52	N52I	aAc	aTc	1	1	AY.46	0.000104
ORF7a	52	N52N	aaC	aaT	1	1	AY.46.2	0.000635
ORF7a	52	N52S	aAc	aGc	1	1	AY.46.2	0.000635
ORF7a	52	N52K	aaC	aaG	1	1	AY.46.4	0.000165
ORF7a	52	N52N	aaC	aaT	1	1	AY.46.4	0.000165
ORF7a	52	N52N	aaC	aaT	1	1	AY.48	0.000465
ORF7a	52	N52del1	aaC	aa-	1	1	AY.5.3	0.000337
ORF7a	52	N52del	AAC	---	1	1	AY.5.4	0.000277
ORF7a	52	N52del	AAC	---	1	1	AY.51	0.000909
ORF7a	52	N52N	aaC	aaT	1	1	AY.52	0.000814
ORF7a	52	N52del2	aAC	a--	1	1	AY.53	0.000288
ORF7a	52	N52del2	aAC	a--	1	1	AY.54	0.000095
ORF7a	52	N52R	aAC	aGG	1	1	AY.54	0.000095
ORF7a	52	N52H	AaC	CaT	1	1	AY.55	0.000917
ORF7a	52	N52del	AAC	---	1	1	AY.55	0.000917
ORF7a	52	N52N	aaC	aaT	1	1	AY.57	0.000656
ORF7a	52	N52del	AAC	---	1	1	AY.59	0.00053
ORF7a	52	N52Y	Aac	Tac	1	1	AY.6	0.000041
ORF7a	52	N52del2	aAC	a--	1	1	AY.6	0.000041
ORF7a	52	N52D	Aac	Gac	1	1	AY.6	0.000041
ORF7a	52	N52S	aAc	aGc	1	1	AY.60	0.000938
ORF7a	52	N52I	aAc	aTc	1	1	AY.61	0.000105
ORF7a	52	N52del	AAC	---	1	1	AY.62	0.000436
ORF7a	52	N52N	aaC	aaT	1	1	AY.64	0.000595
ORF7a	52	N52del	AAC	---	1	1	AY.65	0.000533
ORF7a	52	N52N	aaC	aaT	1	1	AY.66	0.00107
ORF7a	52	N52N	aaC	aaT	1	1	AY.68	0.000274
ORF7a	52	N52N	aaC	aaT	1	1	AY.69	0.000187
ORF7a	52	N52del	AAC	---	1	1	AY.71	0.000475
ORF7a	52	N52N	aaC	aaT	1	1	AY.72	0.001361
ORF7a	52	N52del2	aAC	a--	1	1	AY.73	0.000665
ORF7a	52	N52N	aaC	aaT	1	1	AY.74	0.000116
ORF7a	52	N52N	aaC	aaT	1	1	AY.76	0.004831
ORF7a	52	N52del	AAC	---	1	1	AY.79	0.001211
ORF7a	52	N52del1	Aac	-ac	1	1	AY.8	0.000606
ORF7a	52	N52del	AAC	---	1	1	AY.81	0.001992
ORF7a	52	N52N	aaC	aaT	1	1	AY.87	0.000833
ORF7a	52	N52N	aaC	aaT	1	1	AY.89	0.004902
ORF7a	52	N52del	AAC	---	1	1	AY.89	0.004902
ORF7a	52	N52S	aAc	aGc	1	1	AY.9.1	0.000084
ORF7a	52	N52del2	aAC	a--	1	1	AY.9.2	0.000037
ORF7a	52	N52S	aAc	aGc	1	1	AY.9.2	0.000037
ORF7a	52	N52del	AAC	---	1	1	AY.90	0.000684
ORF7a	52	N52N	aaC	aaT	1	1	AY.90	0.000684
ORF7a	52	N52N	aaC	aaT	1	1	AY.93	0.000273
ORF7a	52	N52del	AAC	---	1	1	AY.94	0.000443
ORF7a	52	N52N	aaC	aaT	1	1	AY.94	0.000443
ORF7a	52	N52del	AAC	---	1	1	AY.95	0.000761
ORF7a	52	N52K	aaC	aaA	1	1	AY.98	0.000079
ORF7a	52	N52D	Aac	Gac	1	1	AY.98	0.000079
ORF7a	52	N52del1	aaC	aa-	1	1	AY.98.1	0.000048
ORF7a	52	N52del	AAC	---	1	1	AZ.2	0.000821
ORF7a	52	N52del	AAC	---	1	1	B	0.000128
ORF7a	52	N52P	AAc	CCc	1	1	B.1	0.000009
ORF7a	52	N52G	AAc	GGc	1	1	B.1	0.000009
ORF7a	52	N52D	Aac	Gac	1	1	B.1	0.000009
ORF7a	52	N52I	aAc	aTc	1	1	B.1	0.000009
ORF7a	52	N52H	Aac	Cac	1	1	B.1	0.000009
ORF7a	52	N52del1	Aac	-ac	1	1	B.1	0.000009
ORF7a	52	N52N	aaC	aaT	1	1	B.1.1.121	0.002427
ORF7a	52	N52N	aaC	aaT	1	1	B.1.1.138	0.006061
ORF7a	52	N52N	aaC	aaT	1	1	B.1.1.153	0.001095
ORF7a	52	N52del	AAC	---	1	1	B.1.1.157	0.000913
ORF7a	52	N52del	AAC	---	1	1	B.1.1.174	0.003378
ORF7a	52	N52del	AAC	---	1	1	B.1.1.192	0.002309
ORF7a	52	N52N	aaC	aaT	1	1	B.1.1.200	0.007463
ORF7a	52	N52N	aaC	aaT	1	1	B.1.1.207	0.001182
ORF7a	52	N52R	aAC	aGA	1	1	B.1.1.214	0.000055
ORF7a	52	N52N	aaC	aaT	1	1	B.1.1.216	0.00089
ORF7a	52	N52T	aAc	aCc	1	1	B.1.1.222	0.000204
ORF7a	52	N52del2	aAC	a--	1	1	B.1.1.258	0.003257
ORF7a	52	N52N	aaC	aaT	1	1	B.1.1.263	0.001558
ORF7a	52	N52N	aaC	aaT	1	1	B.1.1.269	0.001353
ORF7a	52	N52N	aaC	aaT	1	1	B.1.1.294	0.001266
ORF7a	52	N52S	aAc	aGc	1	1	B.1.1.318	0.000302
ORF7a	52	N52del	AAC	---	1	1	B.1.1.33	0.000421
ORF7a	52	N52del	AAC	---	1	1	B.1.1.348	0.000796
ORF7a	52	N52del	AAC	---	1	1	B.1.1.366	0.015873
ORF7a	52	N52N	aaC	aaT	1	1	B.1.1.398	0.003226
ORF7a	52	N52N	aaC	aaT	1	1	B.1.1.409	0.002833
ORF7a	52	N52N	aaC	aaT	1	1	B.1.1.416	0.000905
ORF7a	52	N52K	aaC	aaA	1	1	B.1.1.448	0.002033
ORF7a	52	N52N	aaC	aaT	1	1	B.1.1.46	0.004367
ORF7a	52	N52S	aAc	aGc	1	1	B.1.1.519	0.00004
ORF7a	52	N52K	aaC	aaG	1	1	B.1.1.519	0.00004
ORF7a	52	N52del	AAC	---	1	1	B.1.1.525	0.005464
ORF7a	52	N52N	aaC	aaT	1	1	B.1.1.526	0.003546
ORF7a	52	N52N	aaC	aaT	1	1	B.1.1.528	0.004808
ORF7a	52	N52N	aaC	aaT	1	1	B.1.1.54	0.003021
ORF7a	52	N52H	Aac	Cac	1	1	B.1.1.7	0.000001
ORF7a	52	N52D	Aac	Gac	1	1	B.1.1.71	0.006061
ORF7a	52	N52del	AAC	---	1	1	B.1.115	0.021739
ORF7a	52	N52del	AAC	---	1	1	B.1.140	0.018868
ORF7a	52	N52Y	Aac	Tac	1	1	B.1.160	0.000031
ORF7a	52	N52N	aaC	aaT	1	1	B.1.160.26	0.002421
ORF7a	52	N52Y	Aac	Tac	1	1	B.1.177	0.000013
ORF7a	52	N52I	aAc	aTc	1	1	B.1.177	0.000013
ORF7a	52	N52S	aAc	aGc	1	1	B.1.177	0.000013
ORF7a	52	N52del	AAC	---	1	1	B.1.177.10	0.000878
ORF7a	52	N52N	aaC	aaT	1	1	B.1.177.11	0.001698
ORF7a	52	N52del	AAC	---	1	1	B.1.177.12	0.000152
ORF7a	52	N52I	aAC	aTT	1	1	B.1.177.21	0.000076
ORF7a	52	N52N	aaC	aaT	1	1	B.1.177.4	0.000211
ORF7a	52	N52del	AAC	---	1	1	B.1.177.5	0.001242
ORF7a	52	N52del	AAC	---	1	1	B.1.177.50	0.004695
ORF7a	52	N52N	aaC	aaT	1	1	B.1.177.59	0.016129
ORF7a	52	N52N	aaC	aaT	1	1	B.1.177.6	0.000977
ORF7a	52	N52del	AAC	---	1	1	B.1.177.62	0.001192
ORF7a	52	N52del	AAC	---	1	1	B.1.177.63	0.002703
ORF7a	52	N52N	aaC	aaT	1	1	B.1.177.65	0.000665
ORF7a	52	N52del2	AAc	--c	1	1	B.1.177.73	0.000566
ORF7a	52	N52K	aaC	aaG	1	1	B.1.177.81	0.000189
ORF7a	52	N52N	aaC	aaT	1	1	B.1.177.81	0.000189
ORF7a	52	N52del	AAC	---	1	1	B.1.177.83	0.001481
ORF7a	52	N52K	aaC	aaA	1	1	B.1.177.83	0.001481
ORF7a	52	N52N	aaC	aaT	1	1	B.1.177.87	0.000728
ORF7a	52	N52N	aaC	aaT	1	1	B.1.194	0.04
ORF7a	52	N52S	aAc	aGc	1	1	B.1.2	0.000009
ORF7a	52	N52del	AAC	---	1	1	B.1.221	0.000071
ORF7a	52	N52N	aaC	aaT	1	1	B.1.221.4	0.004167
ORF7a	52	N52N	aaC	aaT	1	1	B.1.222	0.001692
ORF7a	52	N52Y	Aac	Tac	1	1	B.1.234	0.000132
ORF7a	52	N52del	AAC	---	1	1	B.1.240	0.000216
ORF7a	52	N52N	aaC	aaT	1	1	B.1.240	0.000216
ORF7a	52	N52D	Aac	Gac	1	1	B.1.243.2	0.014493
ORF7a	52	N52del1	aaC	aa-	1	1	B.1.258	0.000067
ORF7a	52	N52N	aaC	aaT	1	1	B.1.258.11	0.000396
ORF7a	52	N52K	aaC	aaA	1	1	B.1.351	0.00003
ORF7a	52	N52N	aaC	aaT	1	1	B.1.351.2	0.000303
ORF7a	52	N52del	AAC	---	1	1	B.1.351.3	0.000876
ORF7a	52	N52N	aaC	aaT	1	1	B.1.351.5	0.0006
ORF7a	52	N52del	AAC	---	1	1	B.1.356	0.001727
ORF7a	52	N52T	aAC	aCA	1	1	B.1.36.10	0.004785
ORF7a	52	N52N	aaC	aaT	1	1	B.1.36.10	0.004785
ORF7a	52	N52N	aaC	aaT	1	1	B.1.36.16	0.001425
ORF7a	52	N52N	aaC	aaT	1	1	B.1.36.18	0.00042
ORF7a	52	N52N	aaC	aaT	1	1	B.1.36.29	0.000517
ORF7a	52	N52T	aAc	aCc	1	1	B.1.36.29	0.000517
ORF7a	52	N52G	AAc	GGc	1	1	B.1.36.8	0.001
ORF7a	52	N52N	aaC	aaT	1	1	B.1.36.8	0.001
ORF7a	52	N52N	aaC	aaT	1	1	B.1.366	0.004878
ORF7a	52	N52N	aaC	aaT	1	1	B.1.369	0.000285
ORF7a	52	N52del	AAC	---	1	1	B.1.371	0.001122
ORF7a	52	N52N	aaC	aaT	1	1	B.1.382	0.008929
ORF7a	52	N52N	aaC	aaT	1	1	B.1.399	0.001934
ORF7a	52	N52N	aaC	aaT	1	1	B.1.404	0.001302
ORF7a	52	N52del	AAC	---	1	1	B.1.406	0.006061
ORF7a	52	N52N	aaC	aaT	1	1	B.1.409	0.000781
ORF7a	52	N52N	aaC	aaT	1	1	B.1.411	0.003704
ORF7a	52	N52Q	AaC	CaG	1	1	B.1.416	0.001269
ORF7a	52	N52del	AAC	---	1	1	B.1.416.1	0.001563
ORF7a	52	N52K	aaC	aaG	1	1	B.1.427	0.00005
ORF7a	52	N52S	aAc	aGc	1	1	B.1.429	0.000024
ORF7a	52	N52del	AAC	---	1	1	B.1.438.1	0.000107
ORF7a	52	N52del	AAC	---	1	1	B.1.459	0.004082
ORF7a	52	N52N	aaC	aaT	1	1	B.1.466	0.023256
ORF7a	52	N52del	AAC	---	1	1	B.1.466.2	0.000391
ORF7a	52	N52N	aaC	aaT	1	1	B.1.468	0.005714
ORF7a	52	N52del	AAC	---	1	1	B.1.470	0.001404
ORF7a	52	N52R	aAC	aGG	1	1	B.1.497	0.000315
ORF7a	52	N52N	aaC	aaT	1	1	B.1.509	0.000866
ORF7a	52	N52I	aAc	aTc	1	1	B.1.515	0.014493
ORF7a	52	N52T	aAC	aCA	1	1	B.1.525	0.000113
ORF7a	52	N52K	aaC	aaA	1	1	B.1.525	0.000113
ORF7a	52	N52del	AAC	---	1	1	B.1.535	0.028571
ORF7a	52	N52N	aaC	aaT	1	1	B.1.564	0.000426
ORF7a	52	N52del2	aAC	a--	1	1	B.1.567	0.003333
ORF7a	52	N52del	AAC	---	1	1	B.1.568	0.001111
ORF7a	52	N52S	aAc	aGc	1	1	B.1.575	0.000303
ORF7a	52	N52N	aaC	aaT	1	1	B.1.582	0.000491
ORF7a	52	N52K	aaC	aaA	1	1	B.1.588	0.00091
ORF7a	52	N52del	AAC	---	1	1	B.1.595	0.000261
ORF7a	52	N52del	AAC	---	1	1	B.1.617.1	0.000129
ORF7a	52	N52Q	AaC	CaA	1	1	B.1.617.2	0.000004
ORF7a	52	N52del	AAC	---	1	1	B.1.617.3	0.002985
ORF7a	52	N52I	aAC	aTT	1	1	B.1.617.3	0.002985
ORF7a	52	N52N	aaC	aaT	1	1	B.1.627	0.00202
ORF7a	52	N52N	aaC	aaT	1	1	B.1.629	0.013333
ORF7a	52	N52del	AAC	---	1	1	B.1.638	0.052632
ORF7a	52	N52del	AAC	---	1	1	B.1.9.1	0.032258
ORF7a	52	N52N	aaC	aaT	1	1	B.3.1	0.001658
ORF7a	52	N52N	aaC	aaT	1	1	B.4	0.002208
ORF7a	52	N52del	AAC	---	1	1	B.55	0.00295
ORF7a	52	N52T	aAc	aCc	1	1	B.6	0.00091
ORF7a	52	N52N	aaC	aaT	1	1	B.6.6	0.000889
ORF7a	52	N52N	aaC	aaT	1	1	C.1	0.002392
ORF7a	52	N52N	aaC	aaT	1	1	C.11	0.010638
ORF7a	52	N52N	aaC	aaT	1	1	C.30	0.001727
ORF7a	52	N52del	AAC	---	1	1	C.36.3	0.000567
ORF7a	52	N52N	aaC	aaT	1	1	C.37.1	0.002618
ORF7a	52	N52N	aaC	aaT	1	1	C.8	0.004464
ORF7a	52	N52del	AAC	---	1	1	D.2	0.000075
ORF7a	52	N52K	aaC	aaA	1	1	D.2	0.000075
ORF7a	52	N52del	AAC	---	1	1	K.3	0.006173
ORF7a	52	N52N	aaC	aaT	1	1	N.5	0.001767
ORF7a	52	N52N	aaC	aaT	1	1	N.6	0.007092
ORF7a	52	N52D	Aac	Gac	1	1	P.1	0.000016
ORF7a	52	N52Y	Aac	Tac	1	1	P.1	0.000016
ORF7a	52	N52K	aaC	aaA	1	1	P.1	0.000016
ORF7a	52	N52del	AAC	---	1	1	P.1.1	0.000318
ORF7a	52	N52del	AAC	---	1	1	P.1.13	0.000898
ORF7a	52	N52del	AAC	---	1	1	P.1.16	0.000374
ORF7a	52	N52del	AAC	---	1	1	P.1.17	0.000162
ORF7a	52	N52del	AAC	---	1	1	P.1.3	0.034483
ORF7a	52	N52del	AAC	---	1	1	P.1.4	0.000977
ORF7a	52	N52N	aaC	aaT	1	1	P.1.7	0.000319
ORF7a	52	N52del	AAC	---	1	1	Q.1	0.000126
ORF7a	52	N52N	aaC	aaT	1	1	Q.1	0.000126
ORF7a	52	N52del	AAC	---	1	1	Q.4	0.000455
ORF7a	52	N52del	AAC	---	1	1	Q.7	0.001111
ORF7a	52	N52K	aaC	aaA	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.