CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 5 | L5del | del | CTT | --- | 6407 | 6407 | 1 | 27406-27408 | |
ORF7a | 5 | L5P | nonsyn | cTt | cCt | 2974 | 2871 | 0.965366 | 27406-27408 | |
ORF7a | 5 | L5P | nonsyn | cTT | cCG | 2974 | 101 | 0.033961 | 27406-27408 | |
ORF7a | 5 | L5P | nonsyn | cTT | cCC | 2974 | 2 | 0.000672495 | 27406-27408 | |
ORF7a | 5 | L5F | nonsyn | Ctt | Ttt | 2227 | 2226 | 0.999551 | 27406-27408 | |
ORF7a | 5 | L5F | nonsyn | CtT | TtC | 2227 | 1 | 0.000449035 | 27406-27408 | |
ORF7a | 5 | L5L | syn | ctT | ctC | 778 | 370 | 0.475578 | 27406-27408 | |
ORF7a | 5 | L5L | syn | ctT | ctA | 778 | 271 | 0.348329 | 27406-27408 | |
ORF7a | 5 | L5L | syn | ctT | ctG | 778 | 137 | 0.176093 | 27406-27408 | |
ORF7a | 5 | L5I | nonsyn | Ctt | Att | 506 | 504 | 0.996047 | 27406-27408 | |
ORF7a | 5 | L5I | nonsyn | CtT | AtC | 506 | 2 | 0.00395257 | 27406-27408 | |
ORF7a | 5 | L5V | nonsyn | Ctt | Gtt | 145 | 142 | 0.97931 | 27406-27408 | |
ORF7a | 5 | L5V | nonsyn | CtT | GtC | 145 | 2 | 0.0137931 | 27406-27408 | |
ORF7a | 5 | L5V | nonsyn | CtT | GtA | 145 | 1 | 0.00689655 | 27406-27408 | |
ORF7a | 5 | L5R | nonsyn | cTt | cGt | 126 | 123 | 0.97619 | 27406-27408 | |
ORF7a | 5 | L5R | nonsyn | cTT | cGG | 126 | 2 | 0.015873 | 27406-27408 | |
ORF7a | 5 | L5R | nonsyn | cTT | cGA | 126 | 1 | 0.00793651 | 27406-27408 | |
ORF7a | 5 | L5del1 | del | cTt | c-t | 67 | 45 | 0.671642 | 27406-27408 | |
ORF7a | 5 | L5del1 | del | Ctt | -tt | 67 | 16 | 0.238806 | 27406-27408 | |
ORF7a | 5 | L5del1 | del | ctT | ct- | 67 | 2 | 0.0298507 | 27406-27408 | |
ORF7a | 5 | L5del1 | del | CtT | -tN | 67 | 2 | 0.0298507 | 27406-27408 | |
ORF7a | 5 | L5del1 | del | CtT | -tC | 67 | 1 | 0.0149254 | 27406-27408 | |
ORF7a | 5 | L5del1 | del | CTT | -NN | 67 | 1 | 0.0149254 | 27406-27408 | |
ORF7a | 5 | L5H | nonsyn | cTt | cAt | 40 | 39 | 0.975 | 27406-27408 | |
ORF7a | 5 | L5H | nonsyn | cTT | cAC | 40 | 1 | 0.025 | 27406-27408 | |
ORF7a | 5 | L5del2 | del | cTT | c-- | 19 | 16 | 0.842105 | 27406-27408 | |
ORF7a | 5 | L5del2 | del | CTT | --N | 19 | 3 | 0.157895 | 27406-27408 | |
ORF7a | 5 | L5S | nonsyn | CTt | TCt | 12 | 10 | 0.833333 | 27406-27408 | |
ORF7a | 5 | L5S | nonsyn | CTt | AGt | 12 | 2 | 0.166667 | 27406-27408 | |
ORF7a | 5 | L5T | nonsyn | CTT | ACG | 5 | 4 | 0.8 | 27406-27408 | |
ORF7a | 5 | L5T | nonsyn | CTT | ACC | 5 | 1 | 0.2 | 27406-27408 | |
ORF7a | 5 | L5C | nonsyn | CTt | TGt | 3 | 3 | 1 | 27406-27408 | |
ORF7a | 5 | L5G | nonsyn | CTt | GGt | 3 | 2 | 0.666667 | 27406-27408 | |
ORF7a | 5 | L5G | nonsyn | CTT | GGG | 3 | 1 | 0.333333 | 27406-27408 | |
ORF7a | 5 | L5D | nonsyn | CTt | GAt | 2 | 2 | 1 | 27406-27408 | |
ORF7a | 5 | L5N | nonsyn | CTt | AAt | 2 | 2 | 1 | 27406-27408 | |
ORF7a | 5 | L5M | nonsyn | CtT | AtG | 1 | 1 | 1 | 27406-27408 | |
ORF7a | 5 | L5K | nonsyn | CTT | AAG | 1 | 1 | 1 | 27406-27408 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 5 | L5del | CTT | --- | 6407 | 6407 | All | 0.001225 |
ORF7a | 5 | L5del | CTT | --- | 5768 | 5768 | B.1.1.7 | 0.005164 |
ORF7a | 5 | L5P | cTt | cCt | 2871 | 2974 | All | 0.000549 |
ORF7a | 5 | L5P | cTT | cCG | 101 | 2974 | All | 0.000019 |
ORF7a | 5 | L5P | cTT | cCC | 2 | 2974 | All | 0 |
ORF7a | 5 | L5P | cTt | cCt | 2536 | 2536 | AY.4 | 0.003947 |
ORF7a | 5 | L5F | Ctt | Ttt | 2226 | 2227 | All | 0.000426 |
ORF7a | 5 | L5F | CtT | TtC | 1 | 2227 | All | 0 |
ORF7a | 5 | L5L | ctT | ctC | 370 | 778 | All | 0.000071 |
ORF7a | 5 | L5L | ctT | ctA | 271 | 778 | All | 0.000052 |
ORF7a | 5 | L5L | ctT | ctG | 137 | 778 | All | 0.000026 |
ORF7a | 5 | L5F | Ctt | Ttt | 750 | 750 | B.1.1.7 | 0.000671 |
ORF7a | 5 | L5I | Ctt | Att | 504 | 506 | All | 0.000096 |
ORF7a | 5 | L5I | CtT | AtC | 2 | 506 | All | 0 |
ORF7a | 5 | L5I | Ctt | Att | 377 | 377 | AY.4 | 0.000587 |
ORF7a | 5 | L5L | ctT | ctC | 144 | 187 | B.1.1.7 | 0.000129 |
ORF7a | 5 | L5L | ctT | ctA | 30 | 187 | B.1.1.7 | 0.000027 |
ORF7a | 5 | L5L | ctT | ctG | 13 | 187 | B.1.1.7 | 0.000012 |
ORF7a | 5 | L5del | CTT | --- | 179 | 179 | B.1.177.21 | 0.013688 |
ORF7a | 5 | L5F | Ctt | Ttt | 169 | 169 | AY.4 | 0.000263 |
ORF7a | 5 | L5V | Ctt | Gtt | 142 | 145 | All | 0.000027 |
ORF7a | 5 | L5V | CtT | GtC | 2 | 145 | All | 0 |
ORF7a | 5 | L5V | CtT | GtA | 1 | 145 | All | 0 |
ORF7a | 5 | L5L | ctT | ctA | 132 | 138 | AY.5 | 0.002726 |
ORF7a | 5 | L5L | ctT | ctG | 5 | 138 | AY.5 | 0.000103 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 138 | AY.5 | 0.000021 |
ORF7a | 5 | L5del | CTT | --- | 135 | 135 | AY.4 | 0.00021 |
ORF7a | 5 | L5R | cTt | cGt | 123 | 126 | All | 0.000024 |
ORF7a | 5 | L5R | cTT | cGG | 2 | 126 | All | 0 |
ORF7a | 5 | L5R | cTT | cGA | 1 | 126 | All | 0 |
ORF7a | 5 | L5R | cTt | cGt | 99 | 101 | B.1.1.7 | 0.000089 |
ORF7a | 5 | L5R | cTT | cGG | 2 | 101 | B.1.1.7 | 0.000002 |
ORF7a | 5 | L5F | Ctt | Ttt | 83 | 83 | AY.103 | 0.000515 |
ORF7a | 5 | L5del1 | cTt | c-t | 45 | 67 | All | 0.000009 |
ORF7a | 5 | L5del1 | Ctt | -tt | 16 | 67 | All | 0.000003 |
ORF7a | 5 | L5del1 | ctT | ct- | 2 | 67 | All | 0 |
ORF7a | 5 | L5del1 | CtT | -tN | 2 | 67 | All | 0 |
ORF7a | 5 | L5del1 | CTT | -NN | 1 | 67 | All | 0 |
ORF7a | 5 | L5del1 | CtT | -tC | 1 | 67 | All | 0 |
ORF7a | 5 | L5P | cTT | cCG | 36 | 63 | AY.85 | 0.015378 |
ORF7a | 5 | L5P | cTt | cCt | 27 | 63 | AY.85 | 0.011534 |
ORF7a | 5 | L5F | Ctt | Ttt | 63 | 63 | B.1.617.2 | 0.000237 |
ORF7a | 5 | L5F | Ctt | Ttt | 61 | 61 | B.1.2 | 0.000537 |
ORF7a | 5 | L5L | ctT | ctC | 57 | 60 | AY.4 | 0.000089 |
ORF7a | 5 | L5L | ctT | ctA | 3 | 60 | AY.4 | 0.000005 |
ORF7a | 5 | L5V | Ctt | Gtt | 58 | 59 | B.1.1.7 | 0.000052 |
ORF7a | 5 | L5V | CtT | GtA | 1 | 59 | B.1.1.7 | 0.000001 |
ORF7a | 5 | L5P | cTt | cCt | 50 | 55 | B.1.617.2 | 0.000188 |
ORF7a | 5 | L5P | cTT | cCG | 5 | 55 | B.1.617.2 | 0.000019 |
ORF7a | 5 | L5F | Ctt | Ttt | 46 | 46 | AY.102 | 0.00122 |
ORF7a | 5 | L5F | Ctt | Ttt | 45 | 45 | B.1 | 0.000412 |
ORF7a | 5 | L5F | Ctt | Ttt | 44 | 44 | B.1.427 | 0.002222 |
ORF7a | 5 | L5L | ctT | ctC | 29 | 44 | B.1.617.2 | 0.000109 |
ORF7a | 5 | L5L | ctT | ctG | 13 | 44 | B.1.617.2 | 0.000049 |
ORF7a | 5 | L5L | ctT | ctA | 2 | 44 | B.1.617.2 | 0.000008 |
ORF7a | 5 | L5L | ctT | ctA | 40 | 41 | AY.103 | 0.000248 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 41 | AY.103 | 0.000006 |
ORF7a | 5 | L5H | cTt | cAt | 39 | 40 | All | 0.000007 |
ORF7a | 5 | L5H | cTT | cAC | 1 | 40 | All | 0 |
ORF7a | 5 | L5P | cTt | cCt | 35 | 40 | B.1.1.7 | 0.000031 |
ORF7a | 5 | L5P | cTT | cCG | 5 | 40 | B.1.1.7 | 0.000004 |
ORF7a | 5 | L5F | Ctt | Ttt | 40 | 40 | B.1.429 | 0.000941 |
ORF7a | 5 | L5F | Ctt | Ttt | 39 | 39 | B.1.526 | 0.000917 |
ORF7a | 5 | L5F | Ctt | Ttt | 34 | 34 | AY.3 | 0.000338 |
ORF7a | 5 | L5P | cTt | cCt | 34 | 34 | R.1 | 0.00306 |
ORF7a | 5 | L5F | Ctt | Ttt | 32 | 32 | AY.26 | 0.000906 |
ORF7a | 5 | L5F | Ctt | Ttt | 32 | 32 | B.1.396 | 0.022583 |
ORF7a | 5 | L5F | Ctt | Ttt | 30 | 30 | P.1 | 0.000473 |
ORF7a | 5 | L5F | Ctt | Ttt | 29 | 29 | AY.75 | 0.001625 |
ORF7a | 5 | L5L | ctT | ctG | 28 | 28 | AY.85 | 0.011961 |
ORF7a | 5 | L5L | ctT | ctA | 20 | 28 | B.1.429 | 0.000471 |
ORF7a | 5 | L5L | ctT | ctC | 8 | 28 | B.1.429 | 0.000188 |
ORF7a | 5 | L5F | Ctt | Ttt | 27 | 27 | AY.25 | 0.000162 |
ORF7a | 5 | L5F | Ctt | Ttt | 27 | 27 | AY.36 | 0.004002 |
ORF7a | 5 | L5P | cTt | cCt | 15 | 27 | P.1 | 0.000236 |
ORF7a | 5 | L5P | cTT | cCG | 11 | 27 | P.1 | 0.000173 |
ORF7a | 5 | L5P | cTT | cCC | 1 | 27 | P.1 | 0.000016 |
ORF7a | 5 | L5L | ctT | ctA | 25 | 25 | AY.33 | 0.001669 |
ORF7a | 5 | L5F | Ctt | Ttt | 25 | 25 | AY.44 | 0.000152 |
ORF7a | 5 | L5F | Ctt | Ttt | 25 | 25 | AZ.1 | 0.021683 |
ORF7a | 5 | L5F | Ctt | Ttt | 24 | 24 | B.1.177 | 0.000316 |
ORF7a | 5 | L5F | Ctt | Ttt | 23 | 23 | B.1.1 | 0.000417 |
ORF7a | 5 | L5F | Ctt | Ttt | 23 | 23 | B.1.351 | 0.000684 |
ORF7a | 5 | L5I | Ctt | Att | 22 | 22 | B.1.617.2 | 0.000083 |
ORF7a | 5 | L5del | CTT | --- | 21 | 21 | AY.29 | 0.000331 |
ORF7a | 5 | L5F | Ctt | Ttt | 21 | 21 | B.1.1.189 | 0.03177 |
ORF7a | 5 | L5I | Ctt | Att | 21 | 21 | B.1.1.7 | 0.000019 |
ORF7a | 5 | L5F | Ctt | Ttt | 20 | 20 | B.1.1.519 | 0.000794 |
ORF7a | 5 | L5del2 | cTT | c-- | 16 | 19 | All | 0.000003 |
ORF7a | 5 | L5del2 | CTT | --N | 3 | 19 | All | 0.000001 |
ORF7a | 5 | L5F | Ctt | Ttt | 19 | 19 | AY.100 | 0.000874 |
ORF7a | 5 | L5V | Ctt | Gtt | 19 | 19 | AY.23 | 0.001325 |
ORF7a | 5 | L5F | Ctt | Ttt | 19 | 19 | B.1.324 | 0.030498 |
ORF7a | 5 | L5L | ctT | ctG | 19 | 19 | B.1.565 | 0.015397 |
ORF7a | 5 | L5del | CTT | --- | 18 | 18 | AY.3 | 0.000179 |
ORF7a | 5 | L5F | Ctt | Ttt | 18 | 18 | AY.43 | 0.00008 |
ORF7a | 5 | L5L | ctT | ctC | 17 | 18 | B.1.596 | 0.001481 |
ORF7a | 5 | L5L | ctT | ctA | 1 | 18 | B.1.596 | 0.000087 |
ORF7a | 5 | L5L | ctT | ctG | 14 | 18 | P.1 | 0.000221 |
ORF7a | 5 | L5L | ctT | ctC | 4 | 18 | P.1 | 0.000063 |
ORF7a | 5 | L5del | CTT | --- | 16 | 16 | AY.25 | 0.000096 |
ORF7a | 5 | L5P | cTT | cCG | 12 | 16 | AY.30 | 0.004749 |
ORF7a | 5 | L5P | cTt | cCt | 4 | 16 | AY.30 | 0.001583 |
ORF7a | 5 | L5P | cTt | cCt | 16 | 16 | B.1.1.332 | 0.5 |
ORF7a | 5 | L5F | Ctt | Ttt | 16 | 16 | B.1.243 | 0.001113 |
ORF7a | 5 | L5F | Ctt | Ttt | 15 | 15 | AY.23 | 0.001046 |
ORF7a | 5 | L5I | Ctt | Att | 14 | 14 | AY.103 | 0.000087 |
ORF7a | 5 | L5del | CTT | --- | 14 | 14 | AY.103 | 0.000087 |
ORF7a | 5 | L5del | CTT | --- | 14 | 14 | AY.43 | 0.000062 |
ORF7a | 5 | L5F | Ctt | Ttt | 14 | 14 | AY.5 | 0.000289 |
ORF7a | 5 | L5del | CTT | --- | 14 | 14 | B.1 | 0.000128 |
ORF7a | 5 | L5F | Ctt | Ttt | 14 | 14 | B.1.1.230 | 0.12844 |
ORF7a | 5 | L5F | Ctt | Ttt | 14 | 14 | B.1.258 | 0.000932 |
ORF7a | 5 | L5del | CTT | --- | 14 | 14 | B.1.617.2 | 0.000053 |
ORF7a | 5 | L5F | Ctt | Ttt | 14 | 14 | C.37 | 0.001625 |
ORF7a | 5 | L5del1 | cTt | c-t | 9 | 13 | AY.103 | 0.000056 |
ORF7a | 5 | L5del1 | Ctt | -tt | 4 | 13 | AY.103 | 0.000025 |
ORF7a | 5 | L5P | cTt | cCt | 11 | 13 | AY.43 | 0.000049 |
ORF7a | 5 | L5P | cTT | cCG | 2 | 13 | AY.43 | 0.000009 |
ORF7a | 5 | L5L | ctT | ctC | 10 | 13 | AY.44 | 0.000061 |
ORF7a | 5 | L5L | ctT | ctG | 2 | 13 | AY.44 | 0.000012 |
ORF7a | 5 | L5L | ctT | ctA | 1 | 13 | AY.44 | 0.000006 |
ORF7a | 5 | L5S | CTt | TCt | 10 | 12 | All | 0.000002 |
ORF7a | 5 | L5S | CTt | AGt | 2 | 12 | All | 0 |
ORF7a | 5 | L5L | ctT | ctC | 8 | 12 | AY.25 | 0.000048 |
ORF7a | 5 | L5L | ctT | ctA | 4 | 12 | AY.25 | 0.000024 |
ORF7a | 5 | L5del | CTT | --- | 12 | 12 | AY.39 | 0.000297 |
ORF7a | 5 | L5del | CTT | --- | 12 | 12 | AY.44 | 0.000073 |
ORF7a | 5 | L5F | Ctt | Ttt | 12 | 12 | B.1.177.43 | 0.017725 |
ORF7a | 5 | L5L | ctT | ctC | 10 | 12 | B.1.2 | 0.000088 |
ORF7a | 5 | L5L | ctT | ctG | 2 | 12 | B.1.2 | 0.000018 |
ORF7a | 5 | L5F | Ctt | Ttt | 11 | 11 | AY.20 | 0.000428 |
ORF7a | 5 | L5L | ctT | ctG | 9 | 11 | AY.43 | 0.00004 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 11 | AY.43 | 0.000004 |
ORF7a | 5 | L5L | ctT | ctA | 1 | 11 | AY.43 | 0.000004 |
ORF7a | 5 | L5F | Ctt | Ttt | 11 | 11 | AY.46.4 | 0.00181 |
ORF7a | 5 | L5P | cTt | cCt | 11 | 11 | B.1 | 0.000101 |
ORF7a | 5 | L5P | cTT | cCG | 6 | 10 | AY.39 | 0.000148 |
ORF7a | 5 | L5P | cTt | cCt | 4 | 10 | AY.39 | 0.000099 |
ORF7a | 5 | L5P | cTt | cCt | 10 | 10 | B.1.177 | 0.000132 |
ORF7a | 5 | L5F | Ctt | Ttt | 10 | 10 | B.1.177.81 | 0.001893 |
ORF7a | 5 | L5del1 | cTt | c-t | 9 | 10 | B.1.617.2 | 0.000034 |
ORF7a | 5 | L5del1 | Ctt | -tt | 1 | 10 | B.1.617.2 | 0.000004 |
ORF7a | 5 | L5L | ctT | ctC | 10 | 10 | C.37 | 0.001161 |
ORF7a | 5 | L5L | ctT | ctC | 9 | 9 | AY.120 | 0.000335 |
ORF7a | 5 | L5del | CTT | --- | 9 | 9 | B.1.1.284 | 0.000967 |
ORF7a | 5 | L5F | Ctt | Ttt | 9 | 9 | B.1.1.434 | 0.003137 |
ORF7a | 5 | L5F | Ctt | Ttt | 9 | 9 | B.1.177.5 | 0.01118 |
ORF7a | 5 | L5del | CTT | --- | 9 | 9 | C.8 | 0.040179 |
ORF7a | 5 | L5del1 | cTt | c-t | 8 | 8 | AY.102 | 0.000212 |
ORF7a | 5 | L5F | Ctt | Ttt | 8 | 8 | AY.119 | 0.000282 |
ORF7a | 5 | L5P | cTt | cCt | 8 | 8 | AY.25 | 0.000048 |
ORF7a | 5 | L5F | Ctt | Ttt | 8 | 8 | AY.29 | 0.000126 |
ORF7a | 5 | L5F | Ctt | Ttt | 8 | 8 | AY.3.1 | 0.000682 |
ORF7a | 5 | L5F | Ctt | Ttt | 8 | 8 | AY.39 | 0.000198 |
ORF7a | 5 | L5I | Ctt | Att | 8 | 8 | AY.44 | 0.000049 |
ORF7a | 5 | L5F | Ctt | Ttt | 8 | 8 | AY.47 | 0.000249 |
ORF7a | 5 | L5del1 | cTt | c-t | 5 | 8 | B.1.1.7 | 0.000004 |
ORF7a | 5 | L5del1 | CtT | -tN | 2 | 8 | B.1.1.7 | 0.000002 |
ORF7a | 5 | L5del1 | CTT | -NN | 1 | 8 | B.1.1.7 | 0.000001 |
ORF7a | 5 | L5H | cTt | cAt | 8 | 8 | B.1.160 | 0.00025 |
ORF7a | 5 | L5F | Ctt | Ttt | 8 | 8 | B.1.160 | 0.00025 |
ORF7a | 5 | L5V | Ctt | Gtt | 8 | 8 | B.1.258 | 0.000532 |
ORF7a | 5 | L5F | Ctt | Ttt | 8 | 8 | B.1.369 | 0.002282 |
ORF7a | 5 | L5V | Ctt | Gtt | 8 | 8 | B.1.525 | 0.000905 |
ORF7a | 5 | L5F | Ctt | Ttt | 8 | 8 | B.40 | 0.002914 |
ORF7a | 5 | L5P | cTt | cCt | 6 | 7 | AY.102 | 0.000159 |
ORF7a | 5 | L5P | cTT | cCG | 1 | 7 | AY.102 | 0.000027 |
ORF7a | 5 | L5del | CTT | --- | 7 | 7 | AY.118 | 0.000439 |
ORF7a | 5 | L5P | cTT | cCG | 4 | 7 | AY.39.1 | 0.000158 |
ORF7a | 5 | L5P | cTt | cCt | 3 | 7 | AY.39.1 | 0.000119 |
ORF7a | 5 | L5S | CTt | TCt | 7 | 7 | AY.4 | 0.000011 |
ORF7a | 5 | L5del | CTT | --- | 7 | 7 | B.1.1.214 | 0.000388 |
ORF7a | 5 | L5del | CTT | --- | 7 | 7 | B.1.177 | 0.000092 |
ORF7a | 5 | L5P | cTt | cCt | 7 | 7 | B.1.2 | 0.000062 |
ORF7a | 5 | L5P | cTt | cCt | 7 | 7 | B.1.409 | 0.005469 |
ORF7a | 5 | L5V | Ctt | Gtt | 7 | 7 | B.1.429 | 0.000165 |
ORF7a | 5 | L5del | CTT | --- | 7 | 7 | C.37 | 0.000812 |
ORF7a | 5 | L5del | CTT | --- | 7 | 7 | P.1 | 0.00011 |
ORF7a | 5 | L5I | Ctt | Att | 6 | 6 | AY.25 | 0.000036 |
ORF7a | 5 | L5P | cTt | cCt | 6 | 6 | AY.3 | 0.00006 |
ORF7a | 5 | L5V | Ctt | Gtt | 6 | 6 | AY.39 | 0.000148 |
ORF7a | 5 | L5del | CTT | --- | 6 | 6 | AY.47 | 0.000187 |
ORF7a | 5 | L5F | Ctt | Ttt | 6 | 6 | AY.57 | 0.003937 |
ORF7a | 5 | L5F | Ctt | Ttt | 6 | 6 | B.1.1.196 | 0.034286 |
ORF7a | 5 | L5F | Ctt | Ttt | 6 | 6 | B.1.177.60 | 0.001311 |
ORF7a | 5 | L5del | CTT | --- | 6 | 6 | B.1.2 | 0.000053 |
ORF7a | 5 | L5F | Ctt | Ttt | 6 | 6 | B.1.258.17 | 0.000624 |
ORF7a | 5 | L5F | Ctt | Ttt | 6 | 6 | B.1.351.2 | 0.001815 |
ORF7a | 5 | L5del | CTT | --- | 6 | 6 | B.1.526 | 0.000141 |
ORF7a | 5 | L5F | Ctt | Ttt | 6 | 6 | B.1.596 | 0.000523 |
ORF7a | 5 | L5F | Ctt | Ttt | 6 | 6 | R.1 | 0.00054 |
ORF7a | 5 | L5T | CTT | ACG | 4 | 5 | All | 0.000001 |
ORF7a | 5 | L5T | CTT | ACC | 1 | 5 | All | 0 |
ORF7a | 5 | L5P | cTT | cCG | 3 | 5 | AY.101 | 0.001471 |
ORF7a | 5 | L5P | cTt | cCt | 2 | 5 | AY.101 | 0.000981 |
ORF7a | 5 | L5F | Ctt | Ttt | 5 | 5 | AY.106 | 0.001674 |
ORF7a | 5 | L5P | cTt | cCt | 5 | 5 | AY.116 | 0.001434 |
ORF7a | 5 | L5del | CTT | --- | 5 | 5 | AY.26 | 0.000142 |
ORF7a | 5 | L5F | Ctt | Ttt | 4 | 5 | AY.33 | 0.000267 |
ORF7a | 5 | L5F | CtT | TtC | 1 | 5 | AY.33 | 0.000067 |
ORF7a | 5 | L5F | Ctt | Ttt | 5 | 5 | AY.4.2.1 | 0.000745 |
ORF7a | 5 | L5F | Ctt | Ttt | 5 | 5 | AY.42 | 0.000201 |
ORF7a | 5 | L5F | Ctt | Ttt | 5 | 5 | AY.98 | 0.000395 |
ORF7a | 5 | L5del | CTT | --- | 5 | 5 | AY.98.1 | 0.000242 |
ORF7a | 5 | L5F | Ctt | Ttt | 5 | 5 | B.1.1.153 | 0.005476 |
ORF7a | 5 | L5F | Ctt | Ttt | 5 | 5 | B.1.177.17 | 0.004105 |
ORF7a | 5 | L5del | CTT | --- | 5 | 5 | B.1.177.44 | 0.002595 |
ORF7a | 5 | L5P | cTt | cCt | 5 | 5 | B.1.526 | 0.000118 |
ORF7a | 5 | L5P | cTT | cCG | 3 | 5 | P.2 | 0.00056 |
ORF7a | 5 | L5P | cTt | cCt | 2 | 5 | P.2 | 0.000373 |
ORF7a | 5 | L5del | CTT | --- | 5 | 5 | Q.8 | 0.000825 |
ORF7a | 5 | L5H | cTt | cAt | 4 | 4 | 0.222222 | |
ORF7a | 5 | L5del | CTT | --- | 4 | 4 | AY.106 | 0.00134 |
ORF7a | 5 | L5F | Ctt | Ttt | 4 | 4 | AY.118 | 0.000251 |
ORF7a | 5 | L5L | ctT | ctG | 4 | 4 | AY.30 | 0.001583 |
ORF7a | 5 | L5F | Ctt | Ttt | 4 | 4 | AY.35 | 0.000932 |
ORF7a | 5 | L5I | Ctt | Att | 4 | 4 | AY.39 | 0.000099 |
ORF7a | 5 | L5V | CtT | GtC | 2 | 4 | AY.4 | 0.000003 |
ORF7a | 5 | L5V | Ctt | Gtt | 2 | 4 | AY.4 | 0.000003 |
ORF7a | 5 | L5P | cTt | cCt | 4 | 4 | AY.42 | 0.000161 |
ORF7a | 5 | L5V | Ctt | Gtt | 4 | 4 | AY.43 | 0.000018 |
ORF7a | 5 | L5L | ctT | ctA | 3 | 4 | AY.6 | 0.000123 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 4 | AY.6 | 0.000041 |
ORF7a | 5 | L5P | cTT | cCG | 2 | 4 | AY.62 | 0.000871 |
ORF7a | 5 | L5P | cTt | cCt | 2 | 4 | AY.62 | 0.000871 |
ORF7a | 5 | L5P | cTT | cCG | 2 | 4 | AY.67 | 0.000929 |
ORF7a | 5 | L5P | cTt | cCt | 2 | 4 | AY.67 | 0.000929 |
ORF7a | 5 | L5L | ctT | ctC | 3 | 4 | AY.99.2 | 0.000276 |
ORF7a | 5 | L5L | ctT | ctG | 1 | 4 | AY.99.2 | 0.000092 |
ORF7a | 5 | L5P | cTt | cCt | 4 | 4 | B.1.1 | 0.000073 |
ORF7a | 5 | L5del | CTT | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF7a | 5 | L5L | ctT | ctC | 3 | 4 | B.1.177 | 0.00004 |
ORF7a | 5 | L5L | ctT | ctG | 1 | 4 | B.1.177 | 0.000013 |
ORF7a | 5 | L5V | Ctt | Gtt | 4 | 4 | B.1.2 | 0.000035 |
ORF7a | 5 | L5del | CTT | --- | 4 | 4 | B.1.429 | 0.000094 |
ORF7a | 5 | L5F | Ctt | Ttt | 4 | 4 | B.1.9.4 | 0.02454 |
ORF7a | 5 | L5F | Ctt | Ttt | 4 | 4 | D.2 | 0.0003 |
ORF7a | 5 | L5F | Ctt | Ttt | 4 | 4 | P.1.14 | 0.000191 |
ORF7a | 5 | L5del | CTT | --- | 4 | 4 | P.1.16 | 0.001496 |
ORF7a | 5 | L5C | CTt | TGt | 3 | 3 | All | 0.000001 |
ORF7a | 5 | L5G | CTt | GGt | 2 | 3 | All | 0 |
ORF7a | 5 | L5G | CTT | GGG | 1 | 3 | All | 0 |
ORF7a | 5 | L5L | ctT | ctG | 3 | 3 | AY.101 | 0.001471 |
ORF7a | 5 | L5L | ctT | ctA | 2 | 3 | AY.102 | 0.000053 |
ORF7a | 5 | L5L | ctT | ctG | 1 | 3 | AY.102 | 0.000027 |
ORF7a | 5 | L5del1 | Ctt | -tt | 3 | 3 | AY.110 | 0.000338 |
ORF7a | 5 | L5F | Ctt | Ttt | 3 | 3 | AY.16.1 | 0.00141 |
ORF7a | 5 | L5R | cTt | cGt | 3 | 3 | AY.26 | 0.000085 |
ORF7a | 5 | L5L | ctT | ctC | 3 | 3 | AY.27 | 0.000194 |
ORF7a | 5 | L5del1 | Ctt | -tt | 3 | 3 | AY.29 | 0.000047 |
ORF7a | 5 | L5F | Ctt | Ttt | 3 | 3 | AY.37 | 0.000948 |
ORF7a | 5 | L5L | ctT | ctC | 2 | 3 | AY.39 | 0.000049 |
ORF7a | 5 | L5L | ctT | ctG | 1 | 3 | AY.39 | 0.000025 |
ORF7a | 5 | L5I | Ctt | Att | 3 | 3 | AY.43 | 0.000013 |
ORF7a | 5 | L5P | cTt | cCt | 2 | 3 | AY.47 | 0.000062 |
ORF7a | 5 | L5P | cTT | cCG | 1 | 3 | AY.47 | 0.000031 |
ORF7a | 5 | L5I | Ctt | Att | 3 | 3 | AY.7.2 | 0.001678 |
ORF7a | 5 | L5L | ctT | ctG | 3 | 3 | AY.94 | 0.001328 |
ORF7a | 5 | L5P | cTt | cCt | 2 | 3 | AY.99.2 | 0.000184 |
ORF7a | 5 | L5P | cTT | cCG | 1 | 3 | AY.99.2 | 0.000092 |
ORF7a | 5 | L5H | cTt | cAt | 3 | 3 | B.1.1 | 0.000054 |
ORF7a | 5 | L5F | Ctt | Ttt | 3 | 3 | B.1.1.1 | 0.00098 |
ORF7a | 5 | L5L | ctT | ctC | 3 | 3 | B.1.1.189 | 0.004539 |
ORF7a | 5 | L5F | Ctt | Ttt | 3 | 3 | B.1.1.305 | 0.011583 |
ORF7a | 5 | L5F | Ctt | Ttt | 3 | 3 | B.1.1.412 | 0.022901 |
ORF7a | 5 | L5I | Ctt | Att | 3 | 3 | B.1.1.429 | 0.013825 |
ORF7a | 5 | L5del2 | cTT | c-- | 3 | 3 | B.1.1.7 | 0.000003 |
ORF7a | 5 | L5I | Ctt | Att | 3 | 3 | B.1.177 | 0.00004 |
ORF7a | 5 | L5F | Ctt | Ttt | 3 | 3 | B.1.177.57 | 0.000843 |
ORF7a | 5 | L5F | Ctt | Ttt | 3 | 3 | B.1.177.7 | 0.000495 |
ORF7a | 5 | L5del2 | cTT | c-- | 3 | 3 | B.1.2 | 0.000026 |
ORF7a | 5 | L5del | CTT | --- | 3 | 3 | B.1.234 | 0.000396 |
ORF7a | 5 | L5F | Ctt | Ttt | 3 | 3 | B.1.234 | 0.000396 |
ORF7a | 5 | L5H | cTt | cAt | 3 | 3 | B.1.240 | 0.000647 |
ORF7a | 5 | L5L | ctT | ctC | 3 | 3 | B.1.258.14 | 0.002941 |
ORF7a | 5 | L5F | Ctt | Ttt | 3 | 3 | B.1.36.29 | 0.001552 |
ORF7a | 5 | L5V | Ctt | Gtt | 3 | 3 | B.1.427 | 0.000151 |
ORF7a | 5 | L5I | Ctt | Att | 3 | 3 | B.1.429 | 0.000071 |
ORF7a | 5 | L5del2 | CTT | --N | 3 | 3 | B.1.438.1 | 0.000322 |
ORF7a | 5 | L5I | Ctt | Att | 3 | 3 | B.1.438.1 | 0.000322 |
ORF7a | 5 | L5F | Ctt | Ttt | 3 | 3 | B.1.617.1 | 0.000387 |
ORF7a | 5 | L5R | cTt | cGt | 3 | 3 | B.1.617.2 | 0.000011 |
ORF7a | 5 | L5L | ctT | ctC | 3 | 3 | B.1.621 | 0.000266 |
ORF7a | 5 | L5P | cTt | cCt | 3 | 3 | B.1.621 | 0.000266 |
ORF7a | 5 | L5del | CTT | --- | 3 | 3 | B.1.626 | 0.017143 |
ORF7a | 5 | L5R | cTt | cGt | 2 | 2 | 0.111111 | |
ORF7a | 5 | L5G | CTt | GGt | 2 | 2 | 0.111111 | |
ORF7a | 5 | L5I | Ctt | Att | 2 | 2 | 0.111111 | |
ORF7a | 5 | L5V | Ctt | Gtt | 2 | 2 | 0.111111 | |
ORF7a | 5 | L5S | CTt | AGt | 2 | 2 | 0.111111 | |
ORF7a | 5 | L5N | CTt | AAt | 2 | 2 | 0.111111 | |
ORF7a | 5 | L5C | CTt | TGt | 2 | 2 | 0.111111 | |
ORF7a | 5 | L5D | CTt | GAt | 2 | 2 | 0.111111 | |
ORF7a | 5 | L5del | CTT | --- | 2 | 2 | A.28 | 0.005291 |
ORF7a | 5 | L5N | CTt | AAt | 2 | 2 | All | 0 |
ORF7a | 5 | L5D | CTt | GAt | 2 | 2 | All | 0 |
ORF7a | 5 | L5del | CTT | --- | 2 | 2 | AY.100 | 0.000092 |
ORF7a | 5 | L5P | cTT | cCG | 1 | 2 | AY.103 | 0.000006 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 2 | AY.103 | 0.000006 |
ORF7a | 5 | L5H | cTt | cAt | 2 | 2 | AY.116.1 | 0.000623 |
ORF7a | 5 | L5P | cTt | cCt | 2 | 2 | AY.117 | 0.000169 |
ORF7a | 5 | L5V | Ctt | Gtt | 2 | 2 | AY.119 | 0.000071 |
ORF7a | 5 | L5del | CTT | --- | 2 | 2 | AY.119 | 0.000071 |
ORF7a | 5 | L5I | Ctt | Att | 2 | 2 | AY.12 | 0.000632 |
ORF7a | 5 | L5del | CTT | --- | 2 | 2 | AY.20 | 0.000078 |
ORF7a | 5 | L5del | CTT | --- | 2 | 2 | AY.29.1 | 0.000441 |
ORF7a | 5 | L5L | ctT | ctC | 2 | 2 | AY.3 | 0.00002 |
ORF7a | 5 | L5del | CTT | --- | 2 | 2 | AY.3.1 | 0.000171 |
ORF7a | 5 | L5del | CTT | --- | 2 | 2 | AY.33 | 0.000134 |
ORF7a | 5 | L5L | ctT | ctG | 2 | 2 | AY.39.1 | 0.000079 |
ORF7a | 5 | L5R | cTt | cGt | 2 | 2 | AY.4 | 0.000003 |
ORF7a | 5 | L5del2 | cTT | c-- | 2 | 2 | AY.4 | 0.000003 |
ORF7a | 5 | L5del | CTT | --- | 2 | 2 | AY.42 | 0.00008 |
ORF7a | 5 | L5del1 | Ctt | -tt | 2 | 2 | AY.44 | 0.000012 |
ORF7a | 5 | L5P | cTt | cCt | 2 | 2 | AY.44 | 0.000012 |
ORF7a | 5 | L5S | CTt | TCt | 2 | 2 | AY.44 | 0.000012 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 2 | AY.46 | 0.000104 |
ORF7a | 5 | L5P | cTT | cCG | 1 | 2 | AY.46 | 0.000104 |
ORF7a | 5 | L5F | Ctt | Ttt | 2 | 2 | AY.54 | 0.000191 |
ORF7a | 5 | L5F | Ctt | Ttt | 2 | 2 | AY.59 | 0.001059 |
ORF7a | 5 | L5F | Ctt | Ttt | 2 | 2 | AY.6 | 0.000082 |
ORF7a | 5 | L5L | ctT | ctG | 2 | 2 | AY.62 | 0.000871 |
ORF7a | 5 | L5F | Ctt | Ttt | 2 | 2 | AY.62 | 0.000871 |
ORF7a | 5 | L5L | ctT | ctG | 2 | 2 | AY.67 | 0.000929 |
ORF7a | 5 | L5F | Ctt | Ttt | 2 | 2 | AY.74 | 0.000231 |
ORF7a | 5 | L5del | CTT | --- | 2 | 2 | AY.75 | 0.000112 |
ORF7a | 5 | L5I | Ctt | Att | 2 | 2 | AY.75.1 | 0.000361 |
ORF7a | 5 | L5L | ctT | ctA | 2 | 2 | AY.84 | 0.000875 |
ORF7a | 5 | L5P | cTt | cCt | 2 | 2 | AY.9.2 | 0.000073 |
ORF7a | 5 | L5V | Ctt | Gtt | 2 | 2 | AY.94 | 0.000885 |
ORF7a | 5 | L5F | Ctt | Ttt | 2 | 2 | AY.99.2 | 0.000184 |
ORF7a | 5 | L5I | Ctt | Att | 2 | 2 | B.1 | 0.000018 |
ORF7a | 5 | L5L | ctT | ctC | 2 | 2 | B.1.1 | 0.000036 |
ORF7a | 5 | L5R | cTt | cGt | 2 | 2 | B.1.1 | 0.000036 |
ORF7a | 5 | L5F | Ctt | Ttt | 2 | 2 | B.1.1.141 | 0.004024 |
ORF7a | 5 | L5L | ctT | ctG | 2 | 2 | B.1.1.207 | 0.002364 |
ORF7a | 5 | L5F | Ctt | Ttt | 2 | 2 | B.1.1.214 | 0.000111 |
ORF7a | 5 | L5H | cTt | cAt | 2 | 2 | B.1.1.222 | 0.000408 |
ORF7a | 5 | L5F | Ctt | Ttt | 2 | 2 | B.1.1.284 | 0.000215 |
ORF7a | 5 | L5F | Ctt | Ttt | 2 | 2 | B.1.1.317 | 0.000823 |
ORF7a | 5 | L5F | Ctt | Ttt | 2 | 2 | B.1.1.39 | 0.001019 |
ORF7a | 5 | L5F | Ctt | Ttt | 2 | 2 | B.1.1.432 | 0.002532 |
ORF7a | 5 | L5H | cTT | cAC | 1 | 2 | B.1.1.7 | 0.000001 |
ORF7a | 5 | L5H | cTt | cAt | 1 | 2 | B.1.1.7 | 0.000001 |
ORF7a | 5 | L5F | Ctt | Ttt | 2 | 2 | B.1.110.3 | 0.001437 |
ORF7a | 5 | L5del | CTT | --- | 2 | 2 | B.1.160 | 0.000062 |
ORF7a | 5 | L5F | Ctt | Ttt | 2 | 2 | B.1.160.14 | 0.004237 |
ORF7a | 5 | L5F | Ctt | Ttt | 2 | 2 | B.1.160.23 | 0.009662 |
ORF7a | 5 | L5R | cTt | cGt | 2 | 2 | B.1.177.57 | 0.000562 |
ORF7a | 5 | L5del | CTT | --- | 2 | 2 | B.1.177.86 | 0.000367 |
ORF7a | 5 | L5F | Ctt | Ttt | 2 | 2 | B.1.177.86 | 0.000367 |
ORF7a | 5 | L5F | Ctt | Ttt | 2 | 2 | B.1.177.9 | 0.002663 |
ORF7a | 5 | L5I | Ctt | Att | 2 | 2 | B.1.2 | 0.000018 |
ORF7a | 5 | L5R | cTt | cGt | 2 | 2 | B.1.2 | 0.000018 |
ORF7a | 5 | L5del1 | cTt | c-t | 1 | 2 | B.1.2 | 0.000009 |
ORF7a | 5 | L5del1 | Ctt | -tt | 1 | 2 | B.1.2 | 0.000009 |
ORF7a | 5 | L5I | Ctt | Att | 2 | 2 | B.1.218 | 0.010309 |
ORF7a | 5 | L5P | cTt | cCt | 2 | 2 | B.1.221 | 0.000142 |
ORF7a | 5 | L5P | cTt | cCt | 2 | 2 | B.1.243 | 0.000139 |
ORF7a | 5 | L5del | CTT | --- | 2 | 2 | B.1.258.11 | 0.000793 |
ORF7a | 5 | L5L | ctT | ctG | 2 | 2 | B.1.258.3 | 0.00335 |
ORF7a | 5 | L5F | Ctt | Ttt | 2 | 2 | B.1.311 | 0.000549 |
ORF7a | 5 | L5del | CTT | --- | 2 | 2 | B.1.351 | 0.000059 |
ORF7a | 5 | L5L | ctT | ctC | 2 | 2 | B.1.351 | 0.000059 |
ORF7a | 5 | L5F | Ctt | Ttt | 2 | 2 | B.1.36 | 0.000292 |
ORF7a | 5 | L5del | CTT | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF7a | 5 | L5F | Ctt | Ttt | 2 | 2 | B.1.36.18 | 0.00084 |
ORF7a | 5 | L5R | cTt | cGt | 2 | 2 | B.1.36.38 | 0.003284 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 2 | B.1.427 | 0.00005 |
ORF7a | 5 | L5L | ctT | ctG | 1 | 2 | B.1.427 | 0.00005 |
ORF7a | 5 | L5F | Ctt | Ttt | 2 | 2 | B.1.516 | 0.003914 |
ORF7a | 5 | L5F | Ctt | Ttt | 2 | 2 | B.1.589 | 0.015152 |
ORF7a | 5 | L5del | CTT | --- | 2 | 2 | B.1.596 | 0.000174 |
ORF7a | 5 | L5V | Ctt | Gtt | 2 | 2 | B.1.596 | 0.000174 |
ORF7a | 5 | L5L | ctT | ctC | 2 | 2 | B.1.617.1 | 0.000258 |
ORF7a | 5 | L5P | cTt | cCt | 2 | 2 | B.1.617.1 | 0.000258 |
ORF7a | 5 | L5H | cTt | cAt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF7a | 5 | L5del2 | cTT | c-- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF7a | 5 | L5del | CTT | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF7a | 5 | L5F | Ctt | Ttt | 2 | 2 | B.1.621 | 0.000177 |
ORF7a | 5 | L5del | CTT | --- | 2 | 2 | B.1.637 | 0.000146 |
ORF7a | 5 | L5L | ctT | ctC | 2 | 2 | B.15 | 0.035088 |
ORF7a | 5 | L5F | Ctt | Ttt | 2 | 2 | C.36.3 | 0.001134 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 2 | P.1.12 | 0.000484 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 2 | P.1.12 | 0.000484 |
ORF7a | 5 | L5L | ctT | ctG | 1 | 2 | P.1.12 | 0.000484 |
ORF7a | 5 | L5P | cTT | cCG | 1 | 2 | P.1.12 | 0.000484 |
ORF7a | 5 | L5L | ctT | ctC | 2 | 2 | P.1.14 | 0.000096 |
ORF7a | 5 | L5V | Ctt | Gtt | 2 | 2 | P.1.17 | 0.000324 |
ORF7a | 5 | L5T | CTT | ACC | 1 | 2 | P.1.2 | 0.001156 |
ORF7a | 5 | L5L | ctT | ctG | 1 | 2 | P.1.2 | 0.001156 |
ORF7a | 5 | L5P | cTT | cCC | 1 | 2 | P.1.2 | 0.001156 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 2 | P.1.2 | 0.001156 |
ORF7a | 5 | L5T | CTT | ACG | 1 | 2 | P.1.2 | 0.001156 |
ORF7a | 5 | L5P | cTT | cCG | 1 | 2 | P.1.2 | 0.001156 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 2 | P.7 | 0.004367 |
ORF7a | 5 | L5P | cTT | cCG | 1 | 2 | P.7 | 0.004367 |
ORF7a | 5 | L5del | CTT | --- | 2 | 2 | Q.1 | 0.000253 |
ORF7a | 5 | L5F | Ctt | Ttt | 2 | 2 | Q.8 | 0.00033 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | A | 0.000387 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 1 | A.1 | 0.000282 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | A.2.5 | 0.000499 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | A.23.1 | 0.000704 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | AD.2 | 0.000219 |
ORF7a | 5 | L5M | CtT | AtG | 1 | 1 | All | 0 |
ORF7a | 5 | L5K | CTT | AAG | 1 | 1 | All | 0 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | AU.1 | 0.001266 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | AY.10 | 0.00053 |
ORF7a | 5 | L5T | CTT | ACG | 1 | 1 | AY.101 | 0.00049 |
ORF7a | 5 | L5I | CtT | AtC | 1 | 1 | AY.101 | 0.00049 |
ORF7a | 5 | L5I | Ctt | Att | 1 | 1 | AY.102 | 0.000027 |
ORF7a | 5 | L5del1 | cTt | c-t | 1 | 1 | AY.105 | 0.000643 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | AY.105 | 0.000643 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | AY.107 | 0.000466 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 1 | AY.107 | 0.000466 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | AY.109 | 0.00074 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | AY.110 | 0.000113 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | AY.111 | 0.000183 |
ORF7a | 5 | L5L | ctT | ctA | 1 | 1 | AY.111 | 0.000183 |
ORF7a | 5 | L5del1 | cTt | c-t | 1 | 1 | AY.113 | 0.000142 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | AY.113 | 0.000142 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 1 | AY.114 | 0.000231 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 1 | AY.115 | 0.005208 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | AY.116 | 0.000287 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | AY.117 | 0.000085 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 1 | AY.117 | 0.000085 |
ORF7a | 5 | L5I | Ctt | Att | 1 | 1 | AY.117 | 0.000085 |
ORF7a | 5 | L5del1 | CtT | -tC | 1 | 1 | AY.117 | 0.000085 |
ORF7a | 5 | L5I | Ctt | Att | 1 | 1 | AY.119 | 0.000035 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | AY.119 | 0.000035 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | AY.12 | 0.000316 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | AY.120 | 0.000037 |
ORF7a | 5 | L5del1 | cTt | c-t | 1 | 1 | AY.120 | 0.000037 |
ORF7a | 5 | L5H | cTt | cAt | 1 | 1 | AY.120.1 | 0.000321 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | AY.120.1 | 0.000321 |
ORF7a | 5 | L5V | Ctt | Gtt | 1 | 1 | AY.120.2 | 0.001285 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF7a | 5 | L5del1 | cTt | c-t | 1 | 1 | AY.121 | 0.000135 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | AY.121 | 0.000135 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | AY.13 | 0.000161 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | AY.22 | 0.002092 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 1 | AY.23 | 0.00007 |
ORF7a | 5 | L5del1 | cTt | c-t | 1 | 1 | AY.23 | 0.00007 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | AY.23.1 | 0.000417 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | AY.23.1 | 0.000417 |
ORF7a | 5 | L5V | Ctt | Gtt | 1 | 1 | AY.25 | 0.000006 |
ORF7a | 5 | L5L | ctT | ctG | 1 | 1 | AY.26 | 0.000028 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | AY.27 | 0.000065 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | AY.27 | 0.000065 |
ORF7a | 5 | L5G | CTT | GGG | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 5 | L5del2 | cTT | c-- | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 5 | L5I | Ctt | Att | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 5 | L5I | Ctt | Att | 1 | 1 | AY.3 | 0.00001 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | AY.32 | 0.000532 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | AY.32 | 0.000532 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 5 | L5H | cTt | cAt | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 5 | L5I | Ctt | Att | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | AY.34 | 0.000097 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 1 | AY.34 | 0.000097 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | AY.34 | 0.000097 |
ORF7a | 5 | L5V | Ctt | Gtt | 1 | 1 | AY.38 | 0.000499 |
ORF7a | 5 | L5del1 | cTt | c-t | 1 | 1 | AY.39 | 0.000025 |
ORF7a | 5 | L5del1 | ctT | ct- | 1 | 1 | AY.4 | 0.000002 |
ORF7a | 5 | L5H | cTt | cAt | 1 | 1 | AY.4 | 0.000002 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 1 | AY.4.2 | 0.000022 |
ORF7a | 5 | L5R | cTt | cGt | 1 | 1 | AY.4.2 | 0.000022 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | AY.4.2 | 0.000022 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | AY.4.5 | 0.000107 |
ORF7a | 5 | L5V | Ctt | Gtt | 1 | 1 | AY.42 | 0.00004 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | AY.45 | 0.000122 |
ORF7a | 5 | L5del1 | cTt | c-t | 1 | 1 | AY.45 | 0.000122 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | AY.46 | 0.000104 |
ORF7a | 5 | L5P | cTT | cCG | 1 | 1 | AY.46.1 | 0.001027 |
ORF7a | 5 | L5del1 | cTt | c-t | 1 | 1 | AY.46.4 | 0.000165 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 1 | AY.47 | 0.000031 |
ORF7a | 5 | L5I | Ctt | Att | 1 | 1 | AY.5.3 | 0.000337 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | AY.54 | 0.000095 |
ORF7a | 5 | L5L | ctT | ctA | 1 | 1 | AY.58 | 0.000907 |
ORF7a | 5 | L5H | cTt | cAt | 1 | 1 | AY.6 | 0.000041 |
ORF7a | 5 | L5V | Ctt | Gtt | 1 | 1 | AY.6 | 0.000041 |
ORF7a | 5 | L5I | Ctt | Att | 1 | 1 | AY.6 | 0.000041 |
ORF7a | 5 | L5I | Ctt | Att | 1 | 1 | AY.61 | 0.000105 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | AY.66 | 0.00107 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | AY.68 | 0.000274 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | AY.69 | 0.000187 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | AY.70 | 0.000209 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | AY.73 | 0.000665 |
ORF7a | 5 | L5V | Ctt | Gtt | 1 | 1 | AY.74 | 0.000116 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 1 | AY.75.1 | 0.00018 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | AY.75.1 | 0.00018 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | AY.79 | 0.001211 |
ORF7a | 5 | L5P | cTT | cCG | 1 | 1 | AY.79 | 0.001211 |
ORF7a | 5 | L5H | cTt | cAt | 1 | 1 | AY.79 | 0.001211 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | AY.84 | 0.000437 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | AY.85 | 0.000427 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | AY.9 | 0.000068 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | AY.9.1 | 0.000084 |
ORF7a | 5 | L5del1 | cTt | c-t | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | AY.94 | 0.000443 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 1 | AY.98 | 0.000079 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | AY.99 | 0.001049 |
ORF7a | 5 | L5I | Ctt | Att | 1 | 1 | B | 0.000128 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | B | 0.000128 |
ORF7a | 5 | L5del2 | cTT | c-- | 1 | 1 | B.1 | 0.000009 |
ORF7a | 5 | L5H | cTt | cAt | 1 | 1 | B.1 | 0.000009 |
ORF7a | 5 | L5del1 | Ctt | -tt | 1 | 1 | B.1 | 0.000009 |
ORF7a | 5 | L5R | cTt | cGt | 1 | 1 | B.1 | 0.000009 |
ORF7a | 5 | L5I | Ctt | Att | 1 | 1 | B.1.1 | 0.000018 |
ORF7a | 5 | L5K | CTT | AAG | 1 | 1 | B.1.1 | 0.000018 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 1 | B.1.1.1 | 0.000327 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.1.135 | 0.004695 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.1.198 | 0.001468 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 1 | B.1.1.216 | 0.00089 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | B.1.1.222 | 0.000204 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.1.25 | 0.000569 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.1.256 | 0.013699 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | B.1.1.258 | 0.003257 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.1.273 | 0.006757 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.1.294 | 0.001266 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.1.311 | 0.000358 |
ORF7a | 5 | L5L | ctT | ctA | 1 | 1 | B.1.1.33 | 0.000421 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.1.362 | 0.005618 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 1 | B.1.1.378 | 0.007299 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.1.41 | 0.006329 |
ORF7a | 5 | L5R | cTt | cGt | 1 | 1 | B.1.1.485 | 0.016667 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.1.50 | 0.000679 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF7a | 5 | L5L | ctT | ctG | 1 | 1 | B.1.1.521 | 0.005348 |
ORF7a | 5 | L5S | CTt | TCt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 5 | L5C | CTt | TGt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.103 | 0.019231 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | B.1.115 | 0.021739 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.140 | 0.018868 |
ORF7a | 5 | L5H | cTt | cAt | 1 | 1 | B.1.147 | 0.000756 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 1 | B.1.160 | 0.000031 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.160.10 | 0.008065 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.160.30 | 0.002976 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | B.1.161 | 0.017241 |
ORF7a | 5 | L5V | Ctt | Gtt | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 5 | L5H | cTt | cAt | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.177.10 | 0.000878 |
ORF7a | 5 | L5del2 | cTT | c-- | 1 | 1 | B.1.177.12 | 0.000152 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | B.1.177.42 | 0.000894 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.177.75 | 0.001041 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF7a | 5 | L5H | cTt | cAt | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.214.2 | 0.0006 |
ORF7a | 5 | L5L | ctT | ctA | 1 | 1 | B.1.214.2 | 0.0006 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | B.1.223 | 0.002778 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 1 | B.1.234 | 0.000132 |
ORF7a | 5 | L5del2 | cTT | c-- | 1 | 1 | B.1.234 | 0.000132 |
ORF7a | 5 | L5H | cTt | cAt | 1 | 1 | B.1.234 | 0.000132 |
ORF7a | 5 | L5I | Ctt | Att | 1 | 1 | B.1.240 | 0.000216 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | B.1.240 | 0.000216 |
ORF7a | 5 | L5I | Ctt | Att | 1 | 1 | B.1.243 | 0.00007 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.256 | 0.017241 |
ORF7a | 5 | L5I | Ctt | Att | 1 | 1 | B.1.258 | 0.000067 |
ORF7a | 5 | L5I | Ctt | Att | 1 | 1 | B.1.258.17 | 0.000104 |
ORF7a | 5 | L5I | Ctt | Att | 1 | 1 | B.1.258.4 | 0.003448 |
ORF7a | 5 | L5H | cTt | cAt | 1 | 1 | B.1.258.7 | 0.001912 |
ORF7a | 5 | L5I | Ctt | Att | 1 | 1 | B.1.301 | 0.005917 |
ORF7a | 5 | L5V | Ctt | Gtt | 1 | 1 | B.1.311 | 0.000275 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.346 | 0.001311 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | B.1.349 | 0.000715 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | B.1.351 | 0.00003 |
ORF7a | 5 | L5del1 | ctT | ct- | 1 | 1 | B.1.351 | 0.00003 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 1 | B.1.36.29 | 0.000517 |
ORF7a | 5 | L5del1 | cTt | c-t | 1 | 1 | B.1.362 | 0.001541 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.375 | 0.00082 |
ORF7a | 5 | L5V | Ctt | Gtt | 1 | 1 | B.1.396 | 0.000706 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.398 | 0.002976 |
ORF7a | 5 | L5I | Ctt | Att | 1 | 1 | B.1.398 | 0.002976 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 1 | B.1.404 | 0.001302 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.407 | 0.035714 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.413 | 0.004255 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | B.1.427 | 0.00005 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | B.1.429 | 0.000024 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF7a | 5 | L5L | ctT | ctG | 1 | 1 | B.1.462 | 0.007246 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | B.1.469 | 0.00361 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | B.1.470 | 0.001404 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.470 | 0.001404 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.509 | 0.000866 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.517 | 0.000427 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF7a | 5 | L5I | Ctt | Att | 1 | 1 | B.1.526 | 0.000024 |
ORF7a | 5 | L5H | cTt | cAt | 1 | 1 | B.1.526 | 0.000024 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.540 | 0.009709 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | B.1.568 | 0.001111 |
ORF7a | 5 | L5del1 | cTt | c-t | 1 | 1 | B.1.574 | 0.002151 |
ORF7a | 5 | L5R | cTT | cGA | 1 | 1 | B.1.576 | 0.000907 |
ORF7a | 5 | L5I | Ctt | Att | 1 | 1 | B.1.576 | 0.000907 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 1 | B.1.582 | 0.000491 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.582 | 0.000491 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 1 | B.1.595 | 0.000261 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | B.1.596 | 0.000087 |
ORF7a | 5 | L5I | Ctt | Att | 1 | 1 | B.1.596 | 0.000087 |
ORF7a | 5 | L5del1 | cTt | c-t | 1 | 1 | B.1.596 | 0.000087 |
ORF7a | 5 | L5del1 | cTt | c-t | 1 | 1 | B.1.606 | 0.006024 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF7a | 5 | L5V | Ctt | Gtt | 1 | 1 | B.1.621 | 0.000089 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.1.634 | 0.003425 |
ORF7a | 5 | L5V | Ctt | Gtt | 1 | 1 | B.1.636 | 0.006711 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | B.3 | 0.000831 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 1 | B.51 | 0.047619 |
ORF7a | 5 | L5V | Ctt | Gtt | 1 | 1 | C.14 | 0.004329 |
ORF7a | 5 | L5H | cTt | cAt | 1 | 1 | C.16 | 0.00106 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | C.16 | 0.00106 |
ORF7a | 5 | L5L | ctT | ctA | 1 | 1 | C.18 | 0.002591 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | C.23 | 0.005814 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | C.36.3 | 0.000567 |
ORF7a | 5 | L5del1 | Ctt | -tt | 1 | 1 | C.37 | 0.000116 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 1 | D.2 | 0.000075 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | D.2 | 0.000075 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | N.6 | 0.007092 |
ORF7a | 5 | L5I | Ctt | Att | 1 | 1 | P.1 | 0.000016 |
ORF7a | 5 | L5H | cTt | cAt | 1 | 1 | P.1 | 0.000016 |
ORF7a | 5 | L5V | Ctt | Gtt | 1 | 1 | P.1 | 0.000016 |
ORF7a | 5 | L5del2 | cTT | c-- | 1 | 1 | P.1 | 0.000016 |
ORF7a | 5 | L5T | CTT | ACG | 1 | 1 | P.1 | 0.000016 |
ORF7a | 5 | L5R | cTt | cGt | 1 | 1 | P.1 | 0.000016 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | P.1.1 | 0.000318 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | P.1.15 | 0.000232 |
ORF7a | 5 | L5T | CTT | ACG | 1 | 1 | P.1.15 | 0.000232 |
ORF7a | 5 | L5R | cTt | cGt | 1 | 1 | P.1.17 | 0.000162 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | P.1.17 | 0.000162 |
ORF7a | 5 | L5M | CtT | AtG | 1 | 1 | P.1.2 | 0.001156 |
ORF7a | 5 | L5I | CtT | AtC | 1 | 1 | P.1.2 | 0.001156 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | P.1.8 | 0.004785 |
ORF7a | 5 | L5L | ctT | ctG | 1 | 1 | P.2 | 0.000187 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | P.2 | 0.000187 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | P.5 | 0.013699 |
ORF7a | 5 | L5L | ctT | ctG | 1 | 1 | P.7 | 0.004367 |
ORF7a | 5 | L5del | CTT | --- | 1 | 1 | Q.5 | 0.016949 |
ORF7a | 5 | L5F | Ctt | Ttt | 1 | 1 | Q.5 | 0.016949 |
ORF7a | 5 | L5R | cTt | cGt | 1 | 1 | Q.8 | 0.000165 |
ORF7a | 5 | L5L | ctT | ctC | 1 | 1 | Q.8 | 0.000165 |
ORF7a | 5 | L5P | cTt | cCt | 1 | 1 | U.3 | 0.003861 |
ORF7a | 5 | L5del2 | cTT | c-- | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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