CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 49

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a49L49deldelCTA---50485048127538-27540
ORF7a49L49PnonsyncTacCa439343810.99726827538-27540
ORF7a49L49PnonsyncTAcCT439380.0018210827538-27540
ORF7a49L49PnonsyncTAcCC439340.00091053927538-27540
ORF7a49L49LsynCtaTta331029690.89697927538-27540
ORF7a49L49LsynctActG33102500.075528727538-27540
ORF7a49L49LsynctActT3310660.019939627538-27540
ORF7a49L49LsynCtATtG3310150.0045317227538-27540
ORF7a49L49LsynctActC3310100.0030211527538-27540
ORF7a49L49InonsynCtaAta3203080.962527538-27540
ORF7a49L49InonsynCtAAtT320110.03437527538-27540
ORF7a49L49InonsynCtAAtC32010.00312527538-27540
ORF7a49L49VnonsynCtaGta1241210.97580627538-27540
ORF7a49L49VnonsynCtAGtT12430.024193527538-27540
ORF7a49L49del1delctAct-59490.83050827538-27540
ORF7a49L49del1delCta-ta5960.10169527538-27540
ORF7a49L49del1delcTAcC-5920.033898327538-27540
ORF7a49L49del1delcTAc-N5910.016949227538-27540
ORF7a49L49del1delCTA-NN5910.016949227538-27540
ORF7a49L49QnonsyncTacAa48450.937527538-27540
ORF7a49L49QnonsyncTAcAG4830.062527538-27540
ORF7a49L49XnonsynCTaTAa31190.61290327538-27540
ORF7a49L49XnonsynCTATAG3160.19354827538-27540
ORF7a49L49XnonsynCTaTGa3160.19354827538-27540
ORF7a49L49del2delcTAc--25180.7227538-27540
ORF7a49L49RnonsyncTacGa25110.4427538-27540
ORF7a49L49RnonsynCTaAGa25100.427538-27540
ORF7a49L49del2delCTA--N2550.227538-27540
ORF7a49L49RnonsyncTAcGG2520.0827538-27540
ORF7a49L49RnonsynCTAAGG2510.0427538-27540
ORF7a49L49del2delCTA--T2510.0427538-27540
ORF7a49L49RnonsyncTAcGT2510.0427538-27540
ORF7a49L49del2delCTa--a2510.0427538-27540
ORF7a49L49SnonsynCTaTCa23130.56521727538-27540
ORF7a49L49SnonsynCTATCT2360.2608727538-27540
ORF7a49L49SnonsynCTATCC2310.043478327538-27540
ORF7a49L49SnonsynCTAAGT2310.043478327538-27540
ORF7a49L49SnonsynCTATCG2310.043478327538-27540
ORF7a49L49SnonsynCTAAGC2310.043478327538-27540
ORF7a49L49FnonsynCtATtT18140.77777827538-27540
ORF7a49L49FnonsynCtATtC1840.22222227538-27540
ORF7a49L49KnonsynCTaAAa16140.87527538-27540
ORF7a49L49KnonsynCTAAAG1620.12527538-27540
ORF7a49L49HnonsyncTAcAT1280.66666727538-27540
ORF7a49L49HnonsyncTAcAC1240.33333327538-27540
ORF7a49L49YnonsynCTATAT870.87527538-27540
ORF7a49L49YnonsynCTATAC810.12527538-27540
ORF7a49L49NnonsynCTAAAT740.57142927538-27540
ORF7a49L49NnonsynCTAAAC730.42857127538-27540
ORF7a49L49CnonsynCTATGT540.827538-27540
ORF7a49L49TnonsynCTaACa530.627538-27540
ORF7a49L49TnonsynCTAACC520.427538-27540
ORF7a49L49CnonsynCTATGC510.227538-27540
ORF7a49L49EnonsynCTaGAa44127538-27540
ORF7a49L49AnonsynCTAGCT430.7527538-27540
ORF7a49L49AnonsynCTaGCa410.2527538-27540
ORF7a49L49DnonsynCTAGAT22127538-27540
ORF7a49L49GnonsynCTaGGa22127538-27540
ORF7a49L49MnonsynCtAAtG11127538-27540

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a49L49delCTA---50485048All0.000965
ORF7a49L49PcTacCa43814393All0.000838
ORF7a49L49PcTAcCT84393All0.000002
ORF7a49L49PcTAcCC44393All0.000001
ORF7a49L49LCtaTta29693310All0.000568
ORF7a49L49LctActG2503310All0.000048
ORF7a49L49LctActT663310All0.000013
ORF7a49L49LCtATtG153310All0.000003
ORF7a49L49LctActC103310All0.000002
ORF7a49L49PcTacCa24402443B.1.617.20.009188
ORF7a49L49PcTAcCC22443B.1.617.20.000008
ORF7a49L49PcTAcCT12443B.1.617.20.000004
ORF7a49L49delCTA---13371337B.1.617.20.005034
ORF7a49L49PcTacCa10901090AY.1020.0289
ORF7a49L49LCtaTta625636AY.40.000973
ORF7a49L49LctActG10636AY.40.000016
ORF7a49L49LctActT1636AY.40.000002
ORF7a49L49delCTA---558558B.1.1.70.0005
ORF7a49L49delCTA---416416AY.250.002502
ORF7a49L49LCtaTta390390B.1.1.1210.946602
ORF7a49L49LCtaTta347373B.1.617.20.001307
ORF7a49L49LctActG22373B.1.617.20.000083
ORF7a49L49LctActT2373B.1.617.20.000008
ORF7a49L49LCtATtG2373B.1.617.20.000008
ORF7a49L49ICtaAta308320All0.000059
ORF7a49L49ICtAAtT11320All0.000002
ORF7a49L49ICtAAtC1320All0
ORF7a49L49delCTA---303303AY.40.000472
ORF7a49L49LCtaTta289289AY.260.008182
ORF7a49L49ICtaAta256256AY.40.000398
ORF7a49L49delCTA---221221AY.1020.00586
ORF7a49L49LCtaTta113215B.1.1.70.000101
ORF7a49L49LctActG96215B.1.1.70.000086
ORF7a49L49LctActC4215B.1.1.70.000004
ORF7a49L49LctActT2215B.1.1.70.000002
ORF7a49L49PcTacCa199199AY.390.004918
ORF7a49L49delCTA---197197AY.430.000873
ORF7a49L49LCtaTta189192AY.1030.001174
ORF7a49L49LctActT3192AY.1030.000019
ORF7a49L49delCTA---180180B.1.177.210.013765
ORF7a49L49LCtaTta152155AY.440.000925
ORF7a49L49LctActT2155AY.440.000012
ORF7a49L49LctActG1155AY.440.000006
ORF7a49L49LCtaTta137137AY.75.10.024702
ORF7a49L49delCTA---126126AY.1030.000782
ORF7a49L49VCtaGta121124All0.000023
ORF7a49L49VCtAGtT3124All0.000001
ORF7a49L49delCTA---120120AY.390.002965
ORF7a49L49PcTacCa120120AY.430.000532
ORF7a49L49delCTA---108108AY.30.001074
ORF7a49L49delCTA---9696AY.440.000584
ORF7a49L49LCtaTta7483AY.250.000445
ORF7a49L49LctActT583AY.250.00003
ORF7a49L49LctActC283AY.250.000012
ORF7a49L49LCtATtG283AY.250.000012
ORF7a49L49delCTA---8181AY.1200.003011
ORF7a49L49delCTA---7474AY.260.002095
ORF7a49L49LCtaTta7072AY.430.00031
ORF7a49L49LctActG272AY.430.000009
ORF7a49L49delCTA---6969AY.46.40.011351
ORF7a49L49delCTA---6767AY.290.001057
ORF7a49L49delCTA---6464AY.1000.002944
ORF7a49L49del1ctAct-4959All0.000009
ORF7a49L49del1Cta-ta659All0.000001
ORF7a49L49del1cTAcC-259All0
ORF7a49L49del1CTA-NN159All0
ORF7a49L49del1cTAc-N159All0
ORF7a49L49LCtaTta5959AY.1110.010806
ORF7a49L49PcTacCa5858AY.46.40.009541
ORF7a49L49delCTA---5555AY.470.001711
ORF7a49L49PcTacCa5353AY.1200.00197
ORF7a49L49QcTacAa4548All0.000009
ORF7a49L49QcTAcAG348All0.000001
ORF7a49L49delCTA---4848AY.3.10.004092
ORF7a49L49delCTA---4848B.1.20.000423
ORF7a49L49PcTacCa4747AY.5.40.013005
ORF7a49L49LCtaTta3545B.1.20.000308
ORF7a49L49LctActG945B.1.20.000079
ORF7a49L49LctActT145B.1.20.000009
ORF7a49L49delCTA---4444B.10.000403
ORF7a49L49LCtaTta4243AY.30.000418
ORF7a49L49LctActG143AY.30.00001
ORF7a49L49PcTacCa3737AY.460.003851
ORF7a49L49delCTA---3737B.1.1.2840.003974
ORF7a49L49delCTA---3737B.1.6210.003275
ORF7a49L49VCtaGta3434P.10.000536
ORF7a49L49XCTaTAa1931All0.000004
ORF7a49L49XCTATAG631All0.000001
ORF7a49L49XCTaTGa631All0.000001
ORF7a49L49LctActG2031B.1.1.5190.000794
ORF7a49L49LCtaTta1131B.1.1.5190.000437
ORF7a49L49PcTacCa2930AY.440.000177
ORF7a49L49PcTAcCT130AY.440.000006
ORF7a49L49LCtaTta2629AY.1020.000689
ORF7a49L49LctActG129AY.1020.000027
ORF7a49L49LctActC129AY.1020.000027
ORF7a49L49LctActT129AY.1020.000027
ORF7a49L49PcTacCa2929AY.1170.002451
ORF7a49L49delCTA---2929AY.540.002765
ORF7a49L49delCTA---2828AY.420.001126
ORF7a49L49LCtaTta2727B.1.1.1760.011863
ORF7a49L49del2cTAc--1825All0.000003
ORF7a49L49RcTacGa1125All0.000002
ORF7a49L49RCTaAGa1025All0.000002
ORF7a49L49del2CTA--N525All0.000001
ORF7a49L49RcTAcGG225All0
ORF7a49L49RcTAcGT125All0
ORF7a49L49RCTAAGG125All0
ORF7a49L49del2CTA--T125All0
ORF7a49L49del2CTa--a125All0
ORF7a49L49delCTA---2525P.10.000394
ORF7a49L49delCTA---2424AY.1190.000847
ORF7a49L49delCTA---2424B.1.1.2140.001331
ORF7a49L49VCtaGta2424B.1.1.70.000021
ORF7a49L49LctActT2424B.1.177.40.005065
ORF7a49L49SCTaTCa1323All0.000002
ORF7a49L49SCTATCT623All0.000001
ORF7a49L49SCTAAGC123All0
ORF7a49L49SCTAAGT123All0
ORF7a49L49SCTATCG123All0
ORF7a49L49SCTATCC123All0
ORF7a49L49PcTacCa2122B.1.1.70.000019
ORF7a49L49PcTAcCC122B.1.1.70.000001
ORF7a49L49QcTacAa2022B.1.617.20.000075
ORF7a49L49QcTAcAG222B.1.617.20.000008
ORF7a49L49delCTA---2121AY.7.20.011745
ORF7a49L49LCtaTta2121AY.9.20.000771
ORF7a49L49delCTA---1919B.1.1770.00025
ORF7a49L49FCtATtT1418All0.000003
ORF7a49L49FCtATtC418All0.000001
ORF7a49L49delCTA---1818B.1.5260.000423
ORF7a49L49delCTA---1717AY.50.000351
ORF7a49L49KCTaAAa1416All0.000003
ORF7a49L49KCTAAAG216All0
ORF7a49L49PcTacCa1616AY.220.033473
ORF7a49L49XCTaTAa1016AY.250.00006
ORF7a49L49XCTATAG316AY.250.000018
ORF7a49L49XCTaTGa316AY.250.000018
ORF7a49L49LCtaTta1116B.10.000101
ORF7a49L49LctActG416B.10.000037
ORF7a49L49LCtATtG116B.10.000009
ORF7a49L49LCtATtG1016B.1.177.210.000765
ORF7a49L49LctActT616B.1.177.210.000459
ORF7a49L49delCTA---1616C.370.001857
ORF7a49L49delCTA---1515AY.200.000583
ORF7a49L49PcTacCa1515AY.450.001825
ORF7a49L49LCtaTta1515AY.610.001572
ORF7a49L49LCtaTta915B.1.10.000163
ORF7a49L49LctActG615B.1.10.000109
ORF7a49L49XCTaTAa915B.1.617.20.000034
ORF7a49L49RCTaAGa815B.1.617.20.00003
ORF7a49L49RcTacGa515B.1.617.20.000019
ORF7a49L49XCTaTGa315B.1.617.20.000011
ORF7a49L49XCTATAG315B.1.617.20.000011
ORF7a49L49RCTAAGG115B.1.617.20.000004
ORF7a49L49RcTAcGG115B.1.617.20.000004
ORF7a49L49LctActG1215D.20.0009
ORF7a49L49LCtaTta315D.20.000225
ORF7a49L49LCtaTta1414AY.1180.000877
ORF7a49L49PcTacCa1414AY.370.004425
ORF7a49L49LctActG1014AY.50.000206
ORF7a49L49LCtaTta414AY.50.000083
ORF7a49L49PcTacCa1414AY.730.009315
ORF7a49L49delCTA---1414B.1.3510.000416
ORF7a49L49delCTA---1414B.1.5960.00122
ORF7a49L49delCTA---1414B.1.6370.001023
ORF7a49L49PcTacCa1313AY.140.001144
ORF7a49L49LCtaTta1313AY.230.000907
ORF7a49L49QcTacAa1313AY.250.000078
ORF7a49L49delCTA---1313AY.680.003559
ORF7a49L49HcTAcAT812All0.000002
ORF7a49L49HcTAcAC412All0.000001
ORF7a49L49PcTacCa1212AY.1060.004019
ORF7a49L49delCTA---1212AY.1100.001352
ORF7a49L49LCtaTta1212AY.680.003285
ORF7a49L49delCTA---1212AY.98.10.000581
ORF7a49L49ICtaAta1212B.1.1.3690.005355
ORF7a49L49PcTacCa1212B.1.120.096
ORF7a49L49delCTA---1212B.1.3240.019262
ORF7a49L49del1ctAct-1111AY.1190.000388
ORF7a49L49LCtaTta1111AY.160.004176
ORF7a49L49delCTA---1111AY.230.000767
ORF7a49L49PcTacCa711AY.250.000042
ORF7a49L49PcTAcCT311AY.250.000018
ORF7a49L49PcTAcCC111AY.250.000006
ORF7a49L49delCTA---1111AY.350.002564
ORF7a49L49delCTA---1111AY.370.003477
ORF7a49L49LCtaTta1111AY.4.20.000239
ORF7a49L49LCtaTta1111B.1.1.370.002122
ORF7a49L49delCTA---1010AY.1060.003349
ORF7a49L49delCTA---1010AY.120.10.00321
ORF7a49L49PcTacCa1010AY.200.000389
ORF7a49L49LCtaTta810AY.470.000249
ORF7a49L49LctActG210AY.470.000062
ORF7a49L49LCtaTta1010C.160.010604
ORF7a49L49LctActG610P.10.000095
ORF7a49L49LCtaTta410P.10.000063
ORF7a49L49delCTA---1010R.10.0009
ORF7a49L49KCTaAAa89AY.250.000048
ORF7a49L49ICtaAta69AY.250.000036
ORF7a49L49ICtAAtT29AY.250.000012
ORF7a49L49KCTAAAG19AY.250.000006
ORF7a49L49ICtAAtC19AY.250.000006
ORF7a49L49delCTA---99AY.450.001095
ORF7a49L49delCTA---99AY.46.20.005718
ORF7a49L49LCtaTta99AY.570.005906
ORF7a49L49del1ctAct-99AY.750.000504
ORF7a49L49LCtaTta89B.1.1770.000105
ORF7a49L49LctActC19B.1.1770.000013
ORF7a49L49delCTA---99L.10.017143
ORF7a49L49YCTATAT78All0.000001
ORF7a49L49YCTATAC18All0
ORF7a49L49del1ctAct-68AY.1020.000159
ORF7a49L49del1cTAcC-18AY.1020.000027
ORF7a49L49del1CTA-NN18AY.1020.000027
ORF7a49L49PcTacCa88AY.1110.001465
ORF7a49L49delCTA---88AY.1160.002294
ORF7a49L49delCTA---88AY.1180.000501
ORF7a49L49del2cTAc--88AY.250.000048
ORF7a49L49HcTAcAT68AY.250.000036
ORF7a49L49SCTaTCa48AY.250.000024
ORF7a49L49SCTATCT28AY.250.000012
ORF7a49L49HcTAcAC28AY.250.000012
ORF7a49L49SCTAAGT18AY.250.000006
ORF7a49L49SCTATCG18AY.250.000006
ORF7a49L49LCtaTta88AY.290.000126
ORF7a49L49ICtAAtT88AY.3.10.000682
ORF7a49L49delCTA---88AY.300.003166
ORF7a49L49PcTacCa88AY.330.000534
ORF7a49L49delCTA---88AY.340.000776
ORF7a49L49VCtaGta88AY.430.000035
ORF7a49L49PcTacCa88AY.46.20.005083
ORF7a49L49delCTA---88B.1.5250.000905
ORF7a49L49del1ctAct-78B.1.617.20.000026
ORF7a49L49SCTaTCa48B.1.617.20.000015
ORF7a49L49SCTATCT28B.1.617.20.000008
ORF7a49L49SCTAAGC18B.1.617.20.000004
ORF7a49L49del1cTAc-N18B.1.617.20.000004
ORF7a49L49SCTATCC18B.1.617.20.000004
ORF7a49L49VCtaGta88P.1.140.000382
ORF7a49L49NCTAAAT47All0.000001
ORF7a49L49NCTAAAC37All0.000001
ORF7a49L49LCtaTta77AY.1100.000789
ORF7a49L49delCTA---77AY.1130.000997
ORF7a49L49LCtaTta77AY.1190.000247
ORF7a49L49LCtaTta67AY.330.000401
ORF7a49L49LctActG17AY.330.000067
ORF7a49L49delCTA---77AY.39.10.000277
ORF7a49L49PcTacCa77AY.540.000667
ORF7a49L49delCTA---77AY.980.000553
ORF7a49L49LctActT77B.1.1.390.003568
ORF7a49L49QcTacAa77B.1.1.70.000006
ORF7a49L49delCTA---77B.1.1600.000218
ORF7a49L49delCTA---77B.1.4290.000165
ORF7a49L49LCtaTta77B.1.617.10.000903
ORF7a49L49delCTA---77P.1.150.001626
ORF7a49L49PcTacCa66AY.1030.000037
ORF7a49L49del1ctAct-66AY.1210.000812
ORF7a49L49delCTA---66AY.1210.000812
ORF7a49L49PcTacCa66AY.160.002278
ORF7a49L49YCTATAT66AY.250.000036
ORF7a49L49LCtaTta66AY.390.000148
ORF7a49L49LCtaTta66AY.710.00285
ORF7a49L49delCTA---66AY.750.000336
ORF7a49L49delCTA---66AY.9.10.000502
ORF7a49L49PcTacCa66AY.980.000474
ORF7a49L49delCTA---66B.1.10.000109
ORF7a49L49LCtaTta66B.1.177.810.001136
ORF7a49L49LCtaTta66B.1.5260.000141
ORF7a49L49KCTaAAa56B.1.617.20.000019
ORF7a49L49KCTAAAG16B.1.617.20.000004
ORF7a49L49LctActG66Q.10.000758
ORF7a49L49CCTATGT45All0.000001
ORF7a49L49TCTaACa35All0.000001
ORF7a49L49TCTAACC25All0
ORF7a49L49CCTATGC15All0
ORF7a49L49delCTA---55AY.140.00044
ORF7a49L49NCTAAAT35AY.250.000018
ORF7a49L49VCtaGta35AY.250.000018
ORF7a49L49VCtAGtT25AY.250.000012
ORF7a49L49NCTAAAC25AY.250.000012
ORF7a49L49LCtaTta55AY.270.000324
ORF7a49L49LCtaTta45AY.360.000593
ORF7a49L49LctActG15AY.360.000148
ORF7a49L49delCTA---55AY.4.20.000108
ORF7a49L49delCTA---55AY.46.10.005133
ORF7a49L49PcTacCa55AY.46.60.000361
ORF7a49L49delCTA---55AY.610.000524
ORF7a49L49LCtaTta55AY.70.00098
ORF7a49L49delCTA---55AY.740.000578
ORF7a49L49LCtaTta25AY.750.000112
ORF7a49L49LctActG25AY.750.000112
ORF7a49L49LctActC15AY.750.000056
ORF7a49L49PcTacCa55AY.840.002187
ORF7a49L49delCTA---55AY.880.004421
ORF7a49L49delCTA---55AY.9.20.000184
ORF7a49L49delCTA---55B.1.1.560.089286
ORF7a49L49delCTA---55B.1.2340.00066
ORF7a49L49VCtaGta55B.1.3510.000149
ORF7a49L49LCtaTta55B.1.466.20.001956
ORF7a49L49VCtaGta55B.1.617.20.000019
ORF7a49L49LctActG55P.20.000933
ORF7a49L49SCTATCT240.111111
ORF7a49L49LctActT240.111111
ORF7a49L49PcTacCa240.111111
ORF7a49L49SCTaTCa240.111111
ORF7a49L49LCtaTta240.111111
ORF7a49L49PcTAcCT240.111111
ORF7a49L49ECTaGAa44All0.000001
ORF7a49L49ACTAGCT34All0.000001
ORF7a49L49ACTaGCa14All0
ORF7a49L49delCTA---44AY.1070.001864
ORF7a49L49delCTA---44AY.1110.000733
ORF7a49L49LctActT34AY.1160.00086
ORF7a49L49LCtaTta14AY.1160.000287
ORF7a49L49LCtaTta44AY.1200.000149
ORF7a49L49LCtaTta44AY.140.000352
ORF7a49L49FCtATtT44AY.250.000024
ORF7a49L49RCTaAGa24AY.250.000012
ORF7a49L49RcTacGa14AY.250.000006
ORF7a49L49RcTAcGT14AY.250.000006
ORF7a49L49PcTacCa44AY.40.000006
ORF7a49L49LCtaTta44AY.46.60.000289
ORF7a49L49ICtaAta44AY.520.003257
ORF7a49L49LCtaTta44AY.60.000165
ORF7a49L49delCTA---44AY.660.004278
ORF7a49L49LCtaTta44AY.840.00175
ORF7a49L49delCTA---44AY.850.001709
ORF7a49L49delCTA---44AY.910.002922
ORF7a49L49delCTA---44AY.990.004197
ORF7a49L49del1ctAct-34B.1.1.70.000003
ORF7a49L49del1Cta-ta14B.1.1.70.000001
ORF7a49L49LCtaTta44B.1.1600.000125
ORF7a49L49LCtaTta44B.1.2340.000528
ORF7a49L49LCtaTta24B.1.3510.000059
ORF7a49L49LctActG14B.1.3510.00003
ORF7a49L49LctActT14B.1.3510.00003
ORF7a49L49LCtaTta34B.1.4290.000071
ORF7a49L49LctActG14B.1.4290.000024
ORF7a49L49FCtATtT44B.1.617.20.000015
ORF7a49L49HcTAcAC24B.1.617.20.000008
ORF7a49L49HcTAcAT24B.1.617.20.000008
ORF7a49L49VCtaGta44P.20.000747
ORF7a49L49LctActG23AY.1000.000092
ORF7a49L49LCtaTta13AY.1000.000046
ORF7a49L49ICtaAta33AY.1030.000019
ORF7a49L49PcTacCa33AY.1050.001929
ORF7a49L49delCTA---33AY.1140.000693
ORF7a49L49delCTA---33AY.1170.000254
ORF7a49L49LctActG23AY.1170.000169
ORF7a49L49LCtaTta13AY.1170.000085
ORF7a49L49LctActG33AY.130.000483
ORF7a49L49PcTacCa33AY.230.000209
ORF7a49L49ECTaGAa33AY.250.000018
ORF7a49L49TCTaACa23AY.250.000012
ORF7a49L49TCTAACC13AY.250.000006
ORF7a49L49delCTA---33AY.29.10.000662
ORF7a49L49LCtaTta33AY.3.10.000256
ORF7a49L49PcTacCa33AY.320.001597
ORF7a49L49delCTA---33AY.330.0002
ORF7a49L49PcTacCa33AY.34.10.00153
ORF7a49L49PcTacCa33AY.360.000445
ORF7a49L49VCtaGta33AY.390.000074
ORF7a49L49LctActG33AY.39.10.000119
ORF7a49L49delCTA---33AY.4.50.000322
ORF7a49L49delCTA---33AY.400.002893
ORF7a49L49LCtaTta33AY.420.000121
ORF7a49L49LctActG13AY.450.000122
ORF7a49L49LCtaTta13AY.450.000122
ORF7a49L49LctActT13AY.450.000122
ORF7a49L49delCTA---33AY.460.000312
ORF7a49L49LCtaTta23AY.460.000208
ORF7a49L49LctActT13AY.460.000104
ORF7a49L49LCtaTta33AY.620.001307
ORF7a49L49PcTacCa33AY.770.003382
ORF7a49L49delCTA---33AY.840.001312
ORF7a49L49PcTacCa33AY.860.00249
ORF7a49L49delCTA---33AY.920.000862
ORF7a49L49delCTA---33AY.950.002283
ORF7a49L49RcTacGa33B.10.000027
ORF7a49L49delCTA---33B.1.1.1210.007282
ORF7a49L49LctActG13B.1.1.2160.00089
ORF7a49L49LctActC13B.1.1.2160.00089
ORF7a49L49LCtaTta13B.1.1.2160.00089
ORF7a49L49delCTA---33B.1.1.250.001706
ORF7a49L49FCtATtT33B.1.177.210.000229
ORF7a49L49delCTA---33B.1.214.20.001799
ORF7a49L49delCTA---33B.1.4270.000151
ORF7a49L49del2cTAc--33B.1.617.20.000011
ORF7a49L49ICtaAta33B.1.617.20.000011
ORF7a49L49LCtaTta33B.1.6200.002838
ORF7a49L49delCTA---33B.1.6260.017143
ORF7a49L49delCTA---33P.1.140.000143
ORF7a49L49LctActG23P.1.140.000096
ORF7a49L49LCtaTta13P.1.140.000048
ORF7a49L49FCtATtT220.111111
ORF7a49L49GCTaGGa220.111111
ORF7a49L49delCTA---22A0.000774
ORF7a49L49delCTA---22A.280.005291
ORF7a49L49DCTAGAT22All0
ORF7a49L49GCTaGGa22All0
ORF7a49L49delCTA---22AY.10.000791
ORF7a49L49del2cTAc--12AY.1030.000006
ORF7a49L49del2CTa--a12AY.1030.000006
ORF7a49L49LCtaTta22AY.1060.00067
ORF7a49L49LCtaTta22AY.1070.000932
ORF7a49L49delCTA---22AY.1080.002205
ORF7a49L49delCTA---22AY.1090.001479
ORF7a49L49PcTacCa22AY.1190.000071
ORF7a49L49delCTA---22AY.190.002281
ORF7a49L49LctActG22AY.190.002281
ORF7a49L49LCtaTta22AY.200.000078
ORF7a49L49delCTA---22AY.240.000862
ORF7a49L49DCTAGAT22AY.250.000012
ORF7a49L49CCTATGT22AY.250.000012
ORF7a49L49del1ctAct-22AY.250.000012
ORF7a49L49ACTAGCT12AY.250.000006
ORF7a49L49ACTaGCa12AY.250.000006
ORF7a49L49ICtaAta22AY.260.000057
ORF7a49L49LCtaTta22AY.300.000791
ORF7a49L49delCTA---22AY.34.10.00102
ORF7a49L49delCTA---22AY.360.000296
ORF7a49L49del1Cta-ta12AY.40.000002
ORF7a49L49del1ctAct-12AY.40.000002
ORF7a49L49delCTA---22AY.4.2.10.000298
ORF7a49L49LCtaTta22AY.4.50.000215
ORF7a49L49ICtaAta22AY.440.000012
ORF7a49L49PcTacCa22AY.46.10.002053
ORF7a49L49LCtaTta22AY.46.20.001271
ORF7a49L49VCtaGta22AY.46.60.000144
ORF7a49L49PcTacCa22AY.470.000062
ORF7a49L49PcTacCa22AY.50.000041
ORF7a49L49LCtaTta22AY.530.000575
ORF7a49L49PcTacCa22AY.530.000575
ORF7a49L49delCTA---22AY.530.000575
ORF7a49L49delCTA---22AY.570.001312
ORF7a49L49PcTacCa22AY.680.000547
ORF7a49L49delCTA---22AY.70.000392
ORF7a49L49LCtaTta22AY.7.10.000225
ORF7a49L49LCtaTta22AY.700.000417
ORF7a49L49VCtaGta22AY.710.00095
ORF7a49L49delCTA---22AY.710.00095
ORF7a49L49PcTacCa22AY.710.00095
ORF7a49L49delCTA---22AY.730.001331
ORF7a49L49del2cTAc--22AY.750.000112
ORF7a49L49LctActT22AY.770.002255
ORF7a49L49delCTA---22AY.90.000135
ORF7a49L49PcTacCa22AY.9.20.000073
ORF7a49L49PcTacCa22AY.920.000575
ORF7a49L49LCtaTta22AY.98.10.000097
ORF7a49L49del2CTA--N22AY.99.20.000184
ORF7a49L49LCtaTta22AY.99.20.000184
ORF7a49L49delCTA---22AY.99.20.000184
ORF7a49L49PcTacCa22B.10.000018
ORF7a49L49QcTacAa12B.10.000009
ORF7a49L49QcTAcAG12B.10.000009
ORF7a49L49VCtaGta22B.1.1.1890.003026
ORF7a49L49VCtaGta22B.1.1.280.000622
ORF7a49L49LCtaTta12B.1.1.280.000311
ORF7a49L49LctActG12B.1.1.280.000311
ORF7a49L49delCTA---22B.1.1.3180.000604
ORF7a49L49LctActG12B.1.1.330.000421
ORF7a49L49LCtaTta12B.1.1.330.000421
ORF7a49L49LCtaTta22B.1.1.4130.013793
ORF7a49L49delCTA---22B.1.1.5190.000079
ORF7a49L49ACTAGCT22B.1.1.70.000002
ORF7a49L49ICtaAta22B.1.1.70.000002
ORF7a49L49LCtaTta22B.1.1.700.000682
ORF7a49L49LctActG22B.1.160.250.022222
ORF7a49L49VCtaGta22B.1.1770.000026
ORF7a49L49PcTacCa12B.1.177.210.000076
ORF7a49L49PcTAcCT12B.1.177.210.000076
ORF7a49L49delCTA---22B.1.177.430.002954
ORF7a49L49delCTA---22B.1.177.810.000379
ORF7a49L49delCTA---22B.1.177.860.000367
ORF7a49L49ICtaAta22B.1.20.000018
ORF7a49L49delCTA---22B.1.2210.000142
ORF7a49L49delCTA---22B.1.2430.000139
ORF7a49L49delCTA---22B.1.258.110.000793
ORF7a49L49del1Cta-ta22B.1.360.000292
ORF7a49L49FCtATtC22B.1.360.000292
ORF7a49L49LctActG12B.1.360.000146
ORF7a49L49LCtaTta12B.1.360.000146
ORF7a49L49delCTA---22B.1.3750.001639
ORF7a49L49VCtaGta22B.1.4160.002538
ORF7a49L49delCTA---22B.1.5750.000607
ORF7a49L49LCtaTta22B.1.5960.000174
ORF7a49L49TCTAACC12B.1.617.20.000004
ORF7a49L49YCTATAC12B.1.617.20.000004
ORF7a49L49NCTAAAC12B.1.617.20.000004
ORF7a49L49NCTAAAT12B.1.617.20.000004
ORF7a49L49YCTATAT12B.1.617.20.000004
ORF7a49L49TCTaACa12B.1.617.20.000004
ORF7a49L49delCTA---22B.1.617.30.00597
ORF7a49L49delCTA---22B.1.621.10.001012
ORF7a49L49LCtaTta12B.1.6370.000073
ORF7a49L49LctActG12B.1.6370.000073
ORF7a49L49delCTA---22C.36.30.001134
ORF7a49L49LCtaTta22P.1.150.000465
ORF7a49L49VCtaGta22P.1.170.000324
ORF7a49L49LCtaTta22P.1.40.001953
ORF7a49L49delCTA---22P.20.000373
ORF7a49L49LctActG11A.10.000282
ORF7a49L49delCTA---11A.10.000282
ORF7a49L49delCTA---11A.23.10.000704
ORF7a49L49ICtaAta11A.290.005319
ORF7a49L49LctActT11A.30.002096
ORF7a49L49LCtaTta11AD.20.000219
ORF7a49L49MCtAAtG11All0
ORF7a49L49PcTacCa11AY.100.00053
ORF7a49L49PcTacCa11AY.1000.000046
ORF7a49L49delCTA---11AY.1010.00049
ORF7a49L49VCtaGta11AY.1020.000027
ORF7a49L49del2cTAc--11AY.1020.000027
ORF7a49L49LCtaTta11AY.1050.000643
ORF7a49L49ICtaAta11AY.1050.000643
ORF7a49L49LCtaTta11AY.1090.00074
ORF7a49L49PcTacCa11AY.1100.000113
ORF7a49L49LCtaTta11AY.1130.000142
ORF7a49L49PcTacCa11AY.1140.000231
ORF7a49L49delCTA---11AY.116.10.000311
ORF7a49L49PcTacCa11AY.1180.000063
ORF7a49L49CCTATGC11AY.1190.000035
ORF7a49L49del2cTAc--11AY.1200.000037
ORF7a49L49LCtaTta11AY.120.20.001285
ORF7a49L49LCtaTta11AY.1210.000135
ORF7a49L49delCTA---11AY.130.000161
ORF7a49L49delCTA---11AY.160.00038
ORF7a49L49PcTacCa11AY.190.00114
ORF7a49L49LCtaTta11AY.20.000356
ORF7a49L49delCTA---11AY.220.002092
ORF7a49L49VCtaGta11AY.230.00007
ORF7a49L49PcTacCa11AY.23.10.000417
ORF7a49L49MCtAAtG11AY.250.000006
ORF7a49L49FCtATtC11AY.260.000028
ORF7a49L49QcTacAa11AY.290.000016
ORF7a49L49LctActT11AY.29.10.000221
ORF7a49L49ICtaAta11AY.30.00001
ORF7a49L49VCtAGtT11AY.3.10.000085
ORF7a49L49LctActG11AY.320.000532
ORF7a49L49PcTacCa11AY.340.000097
ORF7a49L49del2CTA--N11AY.360.000148
ORF7a49L49LCtaTta11AY.370.000316
ORF7a49L49delCTA---11AY.380.000499
ORF7a49L49del1ctAct-11AY.390.000025
ORF7a49L49VCtaGta11AY.40.000002
ORF7a49L49RcTacGa11AY.4.20.000022
ORF7a49L49ICtaAta11AY.4.20.000022
ORF7a49L49LCtaTta11AY.4.2.10.000149
ORF7a49L49PcTacCa11AY.4.2.10.000149
ORF7a49L49PcTacCa11AY.420.00004
ORF7a49L49RcTAcGG11AY.430.000004
ORF7a49L49ICtaAta11AY.430.000004
ORF7a49L49FCtATtT11AY.430.000004
ORF7a49L49VCtaGta11AY.440.000006
ORF7a49L49LCtaTta11AY.46.30.000934
ORF7a49L49ICtaAta11AY.470.000031
ORF7a49L49del2CTA--T11AY.470.000031
ORF7a49L49PcTacCa11AY.480.000465
ORF7a49L49PcTacCa11AY.5.30.000337
ORF7a49L49delCTA---11AY.5.30.000337
ORF7a49L49delCTA---11AY.5.40.000277
ORF7a49L49LCtaTta11AY.540.000095
ORF7a49L49del2cTAc--11AY.540.000095
ORF7a49L49SCTaTCa11AY.540.000095
ORF7a49L49PcTacCa11AY.560.001605
ORF7a49L49ICtaAta11AY.570.000656
ORF7a49L49PcTacCa11AY.580.000907
ORF7a49L49PcTacCa11AY.590.00053
ORF7a49L49delCTA---11AY.590.00053
ORF7a49L49VCtaGta11AY.590.00053
ORF7a49L49PcTacCa11AY.60.000041
ORF7a49L49delCTA---11AY.620.000436
ORF7a49L49PcTacCa11AY.630.000387
ORF7a49L49delCTA---11AY.650.000533
ORF7a49L49LCtaTta11AY.670.000464
ORF7a49L49ICtaAta11AY.70.000196
ORF7a49L49PcTacCa11AY.70.000196
ORF7a49L49delCTA---11AY.7.10.000113
ORF7a49L49PcTacCa11AY.7.10.000113
ORF7a49L49PcTacCa11AY.700.000209
ORF7a49L49PcTacCa11AY.740.000116
ORF7a49L49LCtaTta11AY.740.000116
ORF7a49L49ICtaAta11AY.750.000056
ORF7a49L49PcTacCa11AY.750.000056
ORF7a49L49LctActG11AY.780.001541
ORF7a49L49delCTA---11AY.790.001211
ORF7a49L49delCTA---11AY.80.000606
ORF7a49L49delCTA---11AY.810.001992
ORF7a49L49delCTA---11AY.820.001357
ORF7a49L49PcTacCa11AY.820.001357
ORF7a49L49PcTacCa11AY.870.000833
ORF7a49L49PcTacCa11AY.880.000884
ORF7a49L49delCTA---11AY.890.004902
ORF7a49L49ICtaAta11AY.90.000068
ORF7a49L49PcTacCa11AY.9.10.000084
ORF7a49L49LCtaTta11AY.900.000684
ORF7a49L49delCTA---11AY.900.000684
ORF7a49L49PcTacCa11AY.910.00073
ORF7a49L49del2cTAc--11AY.910.00073
ORF7a49L49LCtaTta11AY.920.000287
ORF7a49L49del1Cta-ta11AY.920.000287
ORF7a49L49LCtaTta11AY.930.000273
ORF7a49L49delCTA---11AY.940.000443
ORF7a49L49PcTacCa11AY.960.002075
ORF7a49L49LCtaTta11AY.980.000079
ORF7a49L49PcTacCa11AY.98.10.000048
ORF7a49L49delCTA---11AZ.20.000821
ORF7a49L49delCTA---11B0.000128
ORF7a49L49LCtaTta11B.1.1.10.000327
ORF7a49L49LCtaTta11B.1.1.1170.009709
ORF7a49L49delCTA---11B.1.1.1570.000913
ORF7a49L49LCtaTta11B.1.1.1740.003378
ORF7a49L49delCTA---11B.1.1.1740.003378
ORF7a49L49delCTA---11B.1.1.1920.002309
ORF7a49L49LCtaTta11B.1.1.1920.002309
ORF7a49L49LCtaTta11B.1.1.2220.000204
ORF7a49L49VCtaGta11B.1.1.2820.011628
ORF7a49L49LCtaTta11B.1.1.3110.000358
ORF7a49L49LCtaTta11B.1.1.3180.000302
ORF7a49L49delCTA---11B.1.1.330.000421
ORF7a49L49LctActG11B.1.1.3480.000796
ORF7a49L49VCtaGta11B.1.1.4110.014706
ORF7a49L49LctActG11B.1.1.500.000679
ORF7a49L49ICtaAta11B.1.1.5190.00004
ORF7a49L49CCTATGT11B.1.1.70.000001
ORF7a49L49del1cTAcC-11B.1.1.700.000341
ORF7a49L49LCtaTta11B.1.1.890.006061
ORF7a49L49delCTA---11B.1.1150.021739
ORF7a49L49delCTA---11B.1.1400.018868
ORF7a49L49KCTaAAa11B.1.1770.000013
ORF7a49L49PcTacCa11B.1.1770.000013
ORF7a49L49CCTATGT11B.1.1770.000013
ORF7a49L49delCTA---11B.1.177.100.000878
ORF7a49L49ICtaAta11B.1.177.210.000076
ORF7a49L49QcTacAa11B.1.177.210.000076
ORF7a49L49PcTacCa11B.1.177.440.000519
ORF7a49L49delCTA---11B.1.177.50.001242
ORF7a49L49delCTA---11B.1.177.500.004695
ORF7a49L49delCTA---11B.1.177.620.001192
ORF7a49L49SCTaTCa11B.1.177.630.002703
ORF7a49L49delCTA---11B.1.177.830.001481
ORF7a49L49LCtaTta11B.1.177.860.000183
ORF7a49L49QcTacAa11B.1.20.000009
ORF7a49L49PcTacCa11B.1.20.000009
ORF7a49L49VCtaGta11B.1.20.000009
ORF7a49L49del2CTA--N11B.1.20.000009
ORF7a49L49LctActG11B.1.2220.001692
ORF7a49L49VCtaGta11B.1.2340.000132
ORF7a49L49delCTA---11B.1.2400.000216
ORF7a49L49LCtaTta11B.1.2410.000812
ORF7a49L49ICtaAta11B.1.2580.000067
ORF7a49L49ICtaAta11B.1.258.170.000104
ORF7a49L49delCTA---11B.1.258.170.000104
ORF7a49L49PcTacCa11B.1.258.170.000104
ORF7a49L49VCtaGta11B.1.258.200.015873
ORF7a49L49LCtaTta11B.1.258.90.005
ORF7a49L49LCtaTta11B.1.2980.002114
ORF7a49L49ECTaGAa11B.1.3510.00003
ORF7a49L49QcTacAa11B.1.3510.00003
ORF7a49L49delCTA---11B.1.351.20.000303
ORF7a49L49delCTA---11B.1.3560.001727
ORF7a49L49LctActG11B.1.36.290.000517
ORF7a49L49PcTacCa11B.1.3700.008
ORF7a49L49delCTA---11B.1.3710.001122
ORF7a49L49LCtaTta11B.1.3890.001002
ORF7a49L49delCTA---11B.1.4160.001269
ORF7a49L49delCTA---11B.1.416.10.001563
ORF7a49L49PcTacCa11B.1.416.10.001563
ORF7a49L49LCtaTta11B.1.416.10.001563
ORF7a49L49ICtaAta11B.1.4270.00005
ORF7a49L49delCTA---11B.1.438.10.000107
ORF7a49L49delCTA---11B.1.4590.004082
ORF7a49L49delCTA---11B.1.466.20.000391
ORF7a49L49FCtATtC11B.1.4680.005714
ORF7a49L49delCTA---11B.1.4700.001404
ORF7a49L49LCtaTta11B.1.4990.00105
ORF7a49L49del1Cta-ta11B.1.5250.000113
ORF7a49L49LctActG11B.1.5250.000113
ORF7a49L49PcTacCa11B.1.5260.000024
ORF7a49L49delCTA---11B.1.5350.028571
ORF7a49L49delCTA---11B.1.5680.001111
ORF7a49L49LCtaTta11B.1.575.10.002439
ORF7a49L49delCTA---11B.1.5760.000907
ORF7a49L49del1ctAct-11B.1.5760.000907
ORF7a49L49delCTA---11B.1.5820.000491
ORF7a49L49delCTA---11B.1.5950.000261
ORF7a49L49ICtAAtT11B.1.617.10.000129
ORF7a49L49SCTaTCa11B.1.617.10.000129
ORF7a49L49del1ctAct-11B.1.6210.000089
ORF7a49L49LCtaTta11B.1.6210.000089
ORF7a49L49RcTacGa11B.1.6370.000073
ORF7a49L49ICtaAta11B.1.6370.000073
ORF7a49L49VCtaGta11B.1.6370.000073
ORF7a49L49delCTA---11B.1.6380.052632
ORF7a49L49delCTA---11B.1.9.10.032258
ORF7a49L49delCTA---11B.550.00295
ORF7a49L49LCtaTta11C.360.000911
ORF7a49L49VCtaGta11C.36.30.000567
ORF7a49L49PcTacCa11D.20.000075
ORF7a49L49delCTA---11K.30.006173
ORF7a49L49del2CTA--N11P.10.000016
ORF7a49L49del1ctAct-11P.10.000016
ORF7a49L49delCTA---11P.1.10.000318
ORF7a49L49LCtaTta11P.1.110.010204
ORF7a49L49VCtaGta11P.1.120.000484
ORF7a49L49delCTA---11P.1.130.000898
ORF7a49L49LctActG11P.1.160.000374
ORF7a49L49delCTA---11P.1.160.000374
ORF7a49L49LCtaTta11P.1.170.000162
ORF7a49L49delCTA---11P.1.30.034483
ORF7a49L49delCTA---11P.1.40.000977
ORF7a49L49delCTA---11Q.70.001111
ORF7a49L49LCtaTta11Q.80.000165
ORF7a49L49PcTacCa11R.10.00009