CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 47 | H47Y | nonsyn | Cat | Tat | 5223 | 5214 | 0.998277 | 27532-27534 | |
ORF7a | 47 | H47Y | nonsyn | CaT | TaC | 5223 | 9 | 0.00172315 | 27532-27534 | |
ORF7a | 47 | H47del | del | CAT | --- | 3238 | 3238 | 1 | 27532-27534 | |
ORF7a | 47 | H47N | nonsyn | Cat | Aat | 1603 | 1593 | 0.993762 | 27532-27534 | |
ORF7a | 47 | H47N | nonsyn | CaT | AaC | 1603 | 10 | 0.0062383 | 27532-27534 | |
ORF7a | 47 | H47H | syn | caT | caC | 1553 | 1553 | 1 | 27532-27534 | |
ORF7a | 47 | H47R | nonsyn | cAt | cGt | 375 | 358 | 0.954667 | 27532-27534 | |
ORF7a | 47 | H47R | nonsyn | CAT | AGA | 375 | 10 | 0.0266667 | 27532-27534 | |
ORF7a | 47 | H47R | nonsyn | cAT | cGC | 375 | 4 | 0.0106667 | 27532-27534 | |
ORF7a | 47 | H47R | nonsyn | CAT | AGG | 375 | 1 | 0.00266667 | 27532-27534 | |
ORF7a | 47 | H47R | nonsyn | cAT | cGG | 375 | 1 | 0.00266667 | 27532-27534 | |
ORF7a | 47 | H47R | nonsyn | cAT | cGA | 375 | 1 | 0.00266667 | 27532-27534 | |
ORF7a | 47 | H47L | nonsyn | cAt | cTt | 177 | 152 | 0.858757 | 27532-27534 | |
ORF7a | 47 | H47L | nonsyn | CAT | TTA | 177 | 9 | 0.0508475 | 27532-27534 | |
ORF7a | 47 | H47L | nonsyn | cAT | cTC | 177 | 5 | 0.0282486 | 27532-27534 | |
ORF7a | 47 | H47L | nonsyn | CAT | TTG | 177 | 5 | 0.0282486 | 27532-27534 | |
ORF7a | 47 | H47L | nonsyn | cAT | cTA | 177 | 4 | 0.0225989 | 27532-27534 | |
ORF7a | 47 | H47L | nonsyn | cAT | cTG | 177 | 2 | 0.0112994 | 27532-27534 | |
ORF7a | 47 | H47Q | nonsyn | caT | caA | 155 | 91 | 0.587097 | 27532-27534 | |
ORF7a | 47 | H47Q | nonsyn | caT | caG | 155 | 64 | 0.412903 | 27532-27534 | |
ORF7a | 47 | H47del1 | del | caT | ca- | 118 | 57 | 0.483051 | 27532-27534 | |
ORF7a | 47 | H47del1 | del | Cat | -at | 118 | 54 | 0.457627 | 27532-27534 | |
ORF7a | 47 | H47del1 | del | cAt | c-t | 118 | 4 | 0.0338983 | 27532-27534 | |
ORF7a | 47 | H47del1 | del | CAT | -NN | 118 | 2 | 0.0169492 | 27532-27534 | |
ORF7a | 47 | H47del1 | del | cAT | c-N | 118 | 1 | 0.00847458 | 27532-27534 | |
ORF7a | 47 | H47D | nonsyn | Cat | Gat | 64 | 60 | 0.9375 | 27532-27534 | |
ORF7a | 47 | H47D | nonsyn | CaT | GaC | 64 | 4 | 0.0625 | 27532-27534 | |
ORF7a | 47 | H47P | nonsyn | cAt | cCt | 56 | 50 | 0.892857 | 27532-27534 | |
ORF7a | 47 | H47P | nonsyn | cAT | cCA | 56 | 3 | 0.0535714 | 27532-27534 | |
ORF7a | 47 | H47P | nonsyn | cAT | cCC | 56 | 2 | 0.0357143 | 27532-27534 | |
ORF7a | 47 | H47P | nonsyn | cAT | cCG | 56 | 1 | 0.0178571 | 27532-27534 | |
ORF7a | 47 | H47F | nonsyn | CAt | TTt | 32 | 24 | 0.75 | 27532-27534 | |
ORF7a | 47 | H47F | nonsyn | CAT | TTC | 32 | 8 | 0.25 | 27532-27534 | |
ORF7a | 47 | H47del2 | del | cAT | c-- | 30 | 18 | 0.6 | 27532-27534 | |
ORF7a | 47 | H47S | nonsyn | CAT | TCA | 30 | 11 | 0.366667 | 27532-27534 | |
ORF7a | 47 | H47del2 | del | CAt | --t | 30 | 11 | 0.366667 | 27532-27534 | |
ORF7a | 47 | H47S | nonsyn | CAt | TCt | 30 | 6 | 0.2 | 27532-27534 | |
ORF7a | 47 | H47S | nonsyn | CAt | AGt | 30 | 5 | 0.166667 | 27532-27534 | |
ORF7a | 47 | H47S | nonsyn | CAT | AGC | 30 | 3 | 0.1 | 27532-27534 | |
ORF7a | 47 | H47S | nonsyn | CAT | TCG | 30 | 3 | 0.1 | 27532-27534 | |
ORF7a | 47 | H47S | nonsyn | CAT | TCC | 30 | 2 | 0.0666667 | 27532-27534 | |
ORF7a | 47 | H47del2 | del | CAT | --W | 30 | 1 | 0.0333333 | 27532-27534 | |
ORF7a | 47 | H47X | nonsyn | CaT | TaA | 24 | 11 | 0.458333 | 27532-27534 | |
ORF7a | 47 | H47X | nonsyn | CAT | TGA | 24 | 9 | 0.375 | 27532-27534 | |
ORF7a | 47 | H47X | nonsyn | CaT | TaG | 24 | 4 | 0.166667 | 27532-27534 | |
ORF7a | 47 | H47K | nonsyn | CaT | AaA | 21 | 14 | 0.666667 | 27532-27534 | |
ORF7a | 47 | H47T | nonsyn | CAT | ACA | 21 | 11 | 0.52381 | 27532-27534 | |
ORF7a | 47 | H47K | nonsyn | CaT | AaG | 21 | 7 | 0.333333 | 27532-27534 | |
ORF7a | 47 | H47T | nonsyn | CAt | ACt | 21 | 6 | 0.285714 | 27532-27534 | |
ORF7a | 47 | H47T | nonsyn | CAT | ACG | 21 | 3 | 0.142857 | 27532-27534 | |
ORF7a | 47 | H47T | nonsyn | CAT | ACC | 21 | 1 | 0.047619 | 27532-27534 | |
ORF7a | 47 | H47C | nonsyn | CAt | TGt | 20 | 17 | 0.85 | 27532-27534 | |
ORF7a | 47 | H47C | nonsyn | CAT | TGC | 20 | 3 | 0.15 | 27532-27534 | |
ORF7a | 47 | H47I | nonsyn | CAT | ATA | 17 | 8 | 0.470588 | 27532-27534 | |
ORF7a | 47 | H47I | nonsyn | CAt | ATt | 17 | 7 | 0.411765 | 27532-27534 | |
ORF7a | 47 | H47I | nonsyn | CAT | ATC | 17 | 2 | 0.117647 | 27532-27534 | |
ORF7a | 47 | H47E | nonsyn | CaT | GaG | 14 | 13 | 0.928571 | 27532-27534 | |
ORF7a | 47 | H47E | nonsyn | CaT | GaA | 14 | 1 | 0.0714286 | 27532-27534 | |
ORF7a | 47 | H47V | nonsyn | CAT | GTG | 12 | 6 | 0.5 | 27532-27534 | |
ORF7a | 47 | H47V | nonsyn | CAt | GTt | 12 | 4 | 0.333333 | 27532-27534 | |
ORF7a | 47 | H47V | nonsyn | CAT | GTC | 12 | 1 | 0.0833333 | 27532-27534 | |
ORF7a | 47 | H47V | nonsyn | CAT | GTA | 12 | 1 | 0.0833333 | 27532-27534 | |
ORF7a | 47 | H47G | nonsyn | CAT | GGG | 6 | 3 | 0.5 | 27532-27534 | |
ORF7a | 47 | H47G | nonsyn | CAt | GGt | 6 | 2 | 0.333333 | 27532-27534 | |
ORF7a | 47 | H47G | nonsyn | CAT | GGC | 6 | 1 | 0.166667 | 27532-27534 | |
ORF7a | 47 | H47M | nonsyn | CAT | ATG | 2 | 2 | 1 | 27532-27534 | |
ORF7a | 47 | H47W | nonsyn | CAT | TGG | 2 | 2 | 1 | 27532-27534 | |
ORF7a | 47 | H47A | nonsyn | CAT | GCA | 1 | 1 | 1 | 27532-27534 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 47 | H47Y | Cat | Tat | 5214 | 5223 | All | 0.000997 |
ORF7a | 47 | H47Y | CaT | TaC | 9 | 5223 | All | 0.000002 |
ORF7a | 47 | H47del | CAT | --- | 3238 | 3238 | All | 0.000619 |
ORF7a | 47 | H47N | Cat | Aat | 1593 | 1603 | All | 0.000305 |
ORF7a | 47 | H47N | CaT | AaC | 10 | 1603 | All | 0.000002 |
ORF7a | 47 | H47H | caT | caC | 1553 | 1553 | All | 0.000297 |
ORF7a | 47 | H47Y | Cat | Tat | 1544 | 1546 | B.1.1.7 | 0.001382 |
ORF7a | 47 | H47Y | CaT | TaC | 2 | 1546 | B.1.1.7 | 0.000002 |
ORF7a | 47 | H47N | Cat | Aat | 672 | 672 | B.1.1.7 | 0.000602 |
ORF7a | 47 | H47del | CAT | --- | 553 | 553 | B.1.1.7 | 0.000495 |
ORF7a | 47 | H47del | CAT | --- | 418 | 418 | AY.25 | 0.002514 |
ORF7a | 47 | H47R | cAt | cGt | 358 | 375 | All | 0.000068 |
ORF7a | 47 | H47R | CAT | AGA | 10 | 375 | All | 0.000002 |
ORF7a | 47 | H47R | cAT | cGC | 4 | 375 | All | 0.000001 |
ORF7a | 47 | H47R | CAT | AGG | 1 | 375 | All | 0 |
ORF7a | 47 | H47R | cAT | cGA | 1 | 375 | All | 0 |
ORF7a | 47 | H47R | cAT | cGG | 1 | 375 | All | 0 |
ORF7a | 47 | H47Y | Cat | Tat | 360 | 360 | AY.4 | 0.00056 |
ORF7a | 47 | H47N | Cat | Aat | 317 | 317 | AY.4 | 0.000493 |
ORF7a | 47 | H47H | caT | caC | 296 | 296 | B.1.551 | 0.381935 |
ORF7a | 47 | H47del | CAT | --- | 288 | 288 | AY.4 | 0.000448 |
ORF7a | 47 | H47del | CAT | --- | 272 | 272 | B.1.617.2 | 0.001024 |
ORF7a | 47 | H47Y | Cat | Tat | 243 | 243 | B.1.2 | 0.00214 |
ORF7a | 47 | H47H | caT | caC | 216 | 216 | B.1.1.186 | 0.742268 |
ORF7a | 47 | H47H | caT | caC | 203 | 203 | AY.4 | 0.000316 |
ORF7a | 47 | H47Y | Cat | Tat | 181 | 181 | B.1.177 | 0.002383 |
ORF7a | 47 | H47del | CAT | --- | 180 | 180 | B.1.177.21 | 0.013765 |
ORF7a | 47 | H47L | cAt | cTt | 152 | 177 | All | 0.000029 |
ORF7a | 47 | H47L | CAT | TTA | 9 | 177 | All | 0.000002 |
ORF7a | 47 | H47L | CAT | TTG | 5 | 177 | All | 0.000001 |
ORF7a | 47 | H47L | cAT | cTC | 5 | 177 | All | 0.000001 |
ORF7a | 47 | H47L | cAT | cTA | 4 | 177 | All | 0.000001 |
ORF7a | 47 | H47L | cAT | cTG | 2 | 177 | All | 0 |
ORF7a | 47 | H47Y | Cat | Tat | 175 | 175 | AY.103 | 0.001087 |
ORF7a | 47 | H47Y | Cat | Tat | 169 | 169 | AY.26 | 0.004784 |
ORF7a | 47 | H47Y | Cat | Tat | 166 | 168 | B.1.617.2 | 0.000625 |
ORF7a | 47 | H47Y | CaT | TaC | 2 | 168 | B.1.617.2 | 0.000008 |
ORF7a | 47 | H47Y | Cat | Tat | 167 | 167 | AY.43 | 0.00074 |
ORF7a | 47 | H47Q | caT | caA | 91 | 155 | All | 0.000017 |
ORF7a | 47 | H47Q | caT | caG | 64 | 155 | All | 0.000012 |
ORF7a | 47 | H47Y | Cat | Tat | 148 | 148 | B.1.429 | 0.003482 |
ORF7a | 47 | H47H | caT | caC | 147 | 147 | AY.25 | 0.000884 |
ORF7a | 47 | H47Y | Cat | Tat | 137 | 141 | AY.25 | 0.000824 |
ORF7a | 47 | H47Y | CaT | TaC | 4 | 141 | AY.25 | 0.000024 |
ORF7a | 47 | H47del | CAT | --- | 122 | 122 | AY.103 | 0.000758 |
ORF7a | 47 | H47del1 | caT | ca- | 57 | 118 | All | 0.000011 |
ORF7a | 47 | H47del1 | Cat | -at | 54 | 118 | All | 0.00001 |
ORF7a | 47 | H47del1 | cAt | c-t | 4 | 118 | All | 0.000001 |
ORF7a | 47 | H47del1 | CAT | -NN | 2 | 118 | All | 0 |
ORF7a | 47 | H47del1 | cAT | c-N | 1 | 118 | All | 0 |
ORF7a | 47 | H47Y | Cat | Tat | 114 | 114 | R.1 | 0.010261 |
ORF7a | 47 | H47N | Cat | Aat | 106 | 106 | P.1 | 0.00167 |
ORF7a | 47 | H47del | CAT | --- | 104 | 104 | AY.3 | 0.001034 |
ORF7a | 47 | H47H | caT | caC | 103 | 103 | B.1.1.7 | 0.000092 |
ORF7a | 47 | H47del | CAT | --- | 96 | 96 | AY.43 | 0.000425 |
ORF7a | 47 | H47Y | Cat | Tat | 95 | 95 | AY.44 | 0.000578 |
ORF7a | 47 | H47Y | Cat | Tat | 94 | 94 | AY.3 | 0.000935 |
ORF7a | 47 | H47del | CAT | --- | 75 | 75 | AY.26 | 0.002123 |
ORF7a | 47 | H47Y | Cat | Tat | 74 | 74 | C.37 | 0.008589 |
ORF7a | 47 | H47del | CAT | --- | 72 | 72 | AY.44 | 0.000438 |
ORF7a | 47 | H47Y | Cat | Tat | 71 | 71 | B.1.1 | 0.001288 |
ORF7a | 47 | H47R | cAt | cGt | 70 | 70 | AY.4 | 0.000109 |
ORF7a | 47 | H47Y | Cat | Tat | 70 | 70 | AY.47 | 0.002177 |
ORF7a | 47 | H47H | caT | caC | 67 | 67 | AY.44 | 0.000408 |
ORF7a | 47 | H47R | cAt | cGt | 66 | 66 | B.1.1.7 | 0.000059 |
ORF7a | 47 | H47Y | Cat | Tat | 65 | 65 | B.1.1.170 | 0.081047 |
ORF7a | 47 | H47D | Cat | Gat | 60 | 64 | All | 0.000011 |
ORF7a | 47 | H47D | CaT | GaC | 4 | 64 | All | 0.000001 |
ORF7a | 47 | H47del | CAT | --- | 63 | 63 | AY.100 | 0.002898 |
ORF7a | 47 | H47H | caT | caC | 63 | 63 | B.1.617.2 | 0.000237 |
ORF7a | 47 | H47Y | Cat | Tat | 61 | 61 | B.1 | 0.000559 |
ORF7a | 47 | H47del | CAT | --- | 58 | 58 | AY.29 | 0.000915 |
ORF7a | 47 | H47Y | Cat | Tat | 57 | 57 | B.1.160 | 0.001778 |
ORF7a | 47 | H47P | cAt | cCt | 50 | 56 | All | 0.00001 |
ORF7a | 47 | H47P | cAT | cCA | 3 | 56 | All | 0.000001 |
ORF7a | 47 | H47P | cAT | cCC | 2 | 56 | All | 0 |
ORF7a | 47 | H47P | cAT | cCG | 1 | 56 | All | 0 |
ORF7a | 47 | H47Y | Cat | Tat | 54 | 54 | P.1 | 0.000851 |
ORF7a | 47 | H47H | caT | caC | 53 | 53 | AY.43 | 0.000235 |
ORF7a | 47 | H47del | CAT | --- | 52 | 52 | AY.47 | 0.001617 |
ORF7a | 47 | H47del | CAT | --- | 51 | 51 | B.1.2 | 0.000449 |
ORF7a | 47 | H47Y | Cat | Tat | 50 | 50 | B.1.1.266 | 0.609756 |
ORF7a | 47 | H47N | Cat | Aat | 49 | 49 | AD.2 | 0.010729 |
ORF7a | 47 | H47del | CAT | --- | 48 | 48 | AY.3.1 | 0.004092 |
ORF7a | 47 | H47del | CAT | --- | 46 | 46 | B.1 | 0.000421 |
ORF7a | 47 | H47del | CAT | --- | 45 | 45 | AY.39 | 0.001112 |
ORF7a | 47 | H47Y | Cat | Tat | 42 | 42 | B.1.160.18 | 0.306569 |
ORF7a | 47 | H47N | Cat | Aat | 42 | 42 | B.1.525 | 0.004753 |
ORF7a | 47 | H47L | cAt | cTt | 38 | 38 | AY.4 | 0.000059 |
ORF7a | 47 | H47del | CAT | --- | 37 | 37 | B.1.1.284 | 0.003974 |
ORF7a | 47 | H47del | CAT | --- | 37 | 37 | B.1.621 | 0.003275 |
ORF7a | 47 | H47R | cAt | cGt | 23 | 36 | AY.25 | 0.000138 |
ORF7a | 47 | H47R | CAT | AGA | 7 | 36 | AY.25 | 0.000042 |
ORF7a | 47 | H47R | cAT | cGC | 3 | 36 | AY.25 | 0.000018 |
ORF7a | 47 | H47R | CAT | AGG | 1 | 36 | AY.25 | 0.000006 |
ORF7a | 47 | H47R | cAT | cGG | 1 | 36 | AY.25 | 0.000006 |
ORF7a | 47 | H47R | cAT | cGA | 1 | 36 | AY.25 | 0.000006 |
ORF7a | 47 | H47Y | Cat | Tat | 35 | 35 | AY.39 | 0.000865 |
ORF7a | 47 | H47Y | Cat | Tat | 34 | 34 | AY.5 | 0.000702 |
ORF7a | 47 | H47N | Cat | Aat | 34 | 34 | B.1.2 | 0.000299 |
ORF7a | 47 | H47Y | Cat | Tat | 34 | 34 | B.1.349 | 0.024303 |
ORF7a | 47 | H47N | Cat | Aat | 27 | 34 | B.1.617.2 | 0.000102 |
ORF7a | 47 | H47N | CaT | AaC | 7 | 34 | B.1.617.2 | 0.000026 |
ORF7a | 47 | H47F | CAt | TTt | 24 | 32 | All | 0.000005 |
ORF7a | 47 | H47F | CAT | TTC | 8 | 32 | All | 0.000002 |
ORF7a | 47 | H47Y | Cat | Tat | 32 | 32 | B.1.1.214 | 0.001775 |
ORF7a | 47 | H47N | Cat | Aat | 32 | 32 | B.1.234 | 0.004222 |
ORF7a | 47 | H47del2 | cAT | c-- | 18 | 30 | All | 0.000003 |
ORF7a | 47 | H47S | CAT | TCA | 11 | 30 | All | 0.000002 |
ORF7a | 47 | H47del2 | CAt | --t | 11 | 30 | All | 0.000002 |
ORF7a | 47 | H47S | CAt | TCt | 6 | 30 | All | 0.000001 |
ORF7a | 47 | H47S | CAt | AGt | 5 | 30 | All | 0.000001 |
ORF7a | 47 | H47S | CAT | AGC | 3 | 30 | All | 0.000001 |
ORF7a | 47 | H47S | CAT | TCG | 3 | 30 | All | 0.000001 |
ORF7a | 47 | H47S | CAT | TCC | 2 | 30 | All | 0 |
ORF7a | 47 | H47del2 | CAT | --W | 1 | 30 | All | 0 |
ORF7a | 47 | H47Y | Cat | Tat | 28 | 28 | AY.42 | 0.001126 |
ORF7a | 47 | H47Y | Cat | Tat | 28 | 28 | B.1.36.18 | 0.011765 |
ORF7a | 47 | H47L | cAt | cTt | 27 | 27 | B.1.637 | 0.001973 |
ORF7a | 47 | H47L | CAT | TTA | 8 | 26 | AY.25 | 0.000048 |
ORF7a | 47 | H47L | cAt | cTt | 8 | 26 | AY.25 | 0.000048 |
ORF7a | 47 | H47L | cAT | cTA | 4 | 26 | AY.25 | 0.000024 |
ORF7a | 47 | H47L | CAT | TTG | 4 | 26 | AY.25 | 0.000024 |
ORF7a | 47 | H47L | cAT | cTC | 2 | 26 | AY.25 | 0.000012 |
ORF7a | 47 | H47P | cAt | cCt | 25 | 26 | AY.36 | 0.003705 |
ORF7a | 47 | H47P | cAT | cCC | 1 | 26 | AY.36 | 0.000148 |
ORF7a | 47 | H47Y | Cat | Tat | 25 | 25 | B.1.407 | 0.892857 |
ORF7a | 47 | H47X | CaT | TaA | 11 | 24 | All | 0.000002 |
ORF7a | 47 | H47X | CAT | TGA | 9 | 24 | All | 0.000002 |
ORF7a | 47 | H47X | CaT | TaG | 4 | 24 | All | 0.000001 |
ORF7a | 47 | H47del1 | Cat | -at | 24 | 24 | AY.4.2 | 0.000521 |
ORF7a | 47 | H47del | CAT | --- | 24 | 24 | B.1.1.214 | 0.001331 |
ORF7a | 47 | H47Y | Cat | Tat | 24 | 24 | B.1.234 | 0.003167 |
ORF7a | 47 | H47Y | Cat | Tat | 23 | 23 | AY.102 | 0.00061 |
ORF7a | 47 | H47S | CAT | TCA | 8 | 23 | AY.25 | 0.000048 |
ORF7a | 47 | H47S | CAt | TCt | 4 | 23 | AY.25 | 0.000024 |
ORF7a | 47 | H47S | CAT | AGC | 3 | 23 | AY.25 | 0.000018 |
ORF7a | 47 | H47S | CAT | TCG | 3 | 23 | AY.25 | 0.000018 |
ORF7a | 47 | H47S | CAt | AGt | 3 | 23 | AY.25 | 0.000018 |
ORF7a | 47 | H47S | CAT | TCC | 2 | 23 | AY.25 | 0.000012 |
ORF7a | 47 | H47H | caT | caC | 22 | 22 | AY.26 | 0.000623 |
ORF7a | 47 | H47Y | Cat | Tat | 22 | 22 | B.1.232 | 0.011822 |
ORF7a | 47 | H47R | cAt | cGt | 22 | 22 | B.1.526 | 0.000517 |
ORF7a | 47 | H47del | CAT | --- | 22 | 22 | P.1 | 0.000347 |
ORF7a | 47 | H47K | CaT | AaA | 14 | 21 | All | 0.000003 |
ORF7a | 47 | H47T | CAT | ACA | 11 | 21 | All | 0.000002 |
ORF7a | 47 | H47K | CaT | AaG | 7 | 21 | All | 0.000001 |
ORF7a | 47 | H47T | CAt | ACt | 6 | 21 | All | 0.000001 |
ORF7a | 47 | H47T | CAT | ACG | 3 | 21 | All | 0.000001 |
ORF7a | 47 | H47T | CAT | ACC | 1 | 21 | All | 0 |
ORF7a | 47 | H47del1 | caT | ca- | 21 | 21 | AY.26 | 0.000595 |
ORF7a | 47 | H47H | caT | caC | 21 | 21 | B.1 | 0.000192 |
ORF7a | 47 | H47H | caT | caC | 21 | 21 | B.1.2 | 0.000185 |
ORF7a | 47 | H47Y | Cat | Tat | 21 | 21 | B.1.36.24 | 0.12963 |
ORF7a | 47 | H47C | CAt | TGt | 17 | 20 | All | 0.000003 |
ORF7a | 47 | H47C | CAT | TGC | 3 | 20 | All | 0.000001 |
ORF7a | 47 | H47Y | Cat | Tat | 20 | 20 | AY.120 | 0.000744 |
ORF7a | 47 | H47Y | Cat | Tat | 20 | 20 | AY.24 | 0.008621 |
ORF7a | 47 | H47del | CAT | --- | 20 | 20 | AY.46.4 | 0.00329 |
ORF7a | 47 | H47H | caT | caC | 20 | 20 | C.37 | 0.002321 |
ORF7a | 47 | H47Y | Cat | Tat | 20 | 20 | P.1.15 | 0.004647 |
ORF7a | 47 | H47del | CAT | --- | 19 | 19 | AY.42 | 0.000764 |
ORF7a | 47 | H47del | CAT | --- | 19 | 19 | AY.7.2 | 0.010626 |
ORF7a | 47 | H47Q | caT | caA | 19 | 19 | B.1.177 | 0.00025 |
ORF7a | 47 | H47del | CAT | --- | 19 | 19 | B.1.177 | 0.00025 |
ORF7a | 47 | H47N | Cat | Aat | 19 | 19 | B.1.637 | 0.001388 |
ORF7a | 47 | H47H | caT | caC | 18 | 18 | AY.103 | 0.000112 |
ORF7a | 47 | H47Y | Cat | Tat | 18 | 18 | AY.20 | 0.0007 |
ORF7a | 47 | H47del | CAT | --- | 18 | 18 | B.1.526 | 0.000423 |
ORF7a | 47 | H47H | caT | caC | 18 | 18 | B.1.575 | 0.005461 |
ORF7a | 47 | H47I | CAT | ATA | 8 | 17 | All | 0.000002 |
ORF7a | 47 | H47I | CAt | ATt | 7 | 17 | All | 0.000001 |
ORF7a | 47 | H47I | CAT | ATC | 2 | 17 | All | 0 |
ORF7a | 47 | H47Y | Cat | Tat | 17 | 17 | AY.100 | 0.000782 |
ORF7a | 47 | H47Y | Cat | Tat | 17 | 17 | AY.4.2 | 0.000369 |
ORF7a | 47 | H47Y | Cat | Tat | 17 | 17 | AY.85 | 0.007262 |
ORF7a | 47 | H47Q | caT | caA | 14 | 17 | B.1 | 0.000128 |
ORF7a | 47 | H47Q | caT | caG | 3 | 17 | B.1 | 0.000027 |
ORF7a | 47 | H47del | CAT | --- | 16 | 16 | AY.119 | 0.000565 |
ORF7a | 47 | H47N | Cat | Aat | 16 | 16 | AY.14 | 0.001408 |
ORF7a | 47 | H47X | CaT | TaA | 7 | 16 | AY.25 | 0.000042 |
ORF7a | 47 | H47X | CAT | TGA | 6 | 16 | AY.25 | 0.000036 |
ORF7a | 47 | H47X | CaT | TaG | 3 | 16 | AY.25 | 0.000018 |
ORF7a | 47 | H47N | Cat | Aat | 16 | 16 | B.1 | 0.000147 |
ORF7a | 47 | H47Q | caT | caA | 12 | 16 | B.1.1.7 | 0.000011 |
ORF7a | 47 | H47Q | caT | caG | 4 | 16 | B.1.1.7 | 0.000004 |
ORF7a | 47 | H47del | CAT | --- | 16 | 16 | C.37 | 0.001857 |
ORF7a | 47 | H47Y | Cat | Tat | 16 | 16 | P.1.14 | 0.000765 |
ORF7a | 47 | H47T | CAT | ACA | 8 | 15 | AY.25 | 0.000048 |
ORF7a | 47 | H47T | CAT | ACG | 3 | 15 | AY.25 | 0.000018 |
ORF7a | 47 | H47T | CAt | ACt | 3 | 15 | AY.25 | 0.000018 |
ORF7a | 47 | H47T | CAT | ACC | 1 | 15 | AY.25 | 0.000006 |
ORF7a | 47 | H47N | Cat | Aat | 15 | 15 | AY.26 | 0.000425 |
ORF7a | 47 | H47del | CAT | --- | 15 | 15 | AY.5 | 0.00031 |
ORF7a | 47 | H47Y | Cat | Tat | 15 | 15 | B.1.351 | 0.000446 |
ORF7a | 47 | H47del | CAT | --- | 15 | 15 | B.1.351 | 0.000446 |
ORF7a | 47 | H47Y | Cat | Tat | 15 | 15 | B.1.427 | 0.000757 |
ORF7a | 47 | H47Q | caT | caA | 8 | 15 | B.1.617.2 | 0.00003 |
ORF7a | 47 | H47Q | caT | caG | 7 | 15 | B.1.617.2 | 0.000026 |
ORF7a | 47 | H47E | CaT | GaG | 13 | 14 | All | 0.000002 |
ORF7a | 47 | H47E | CaT | GaA | 1 | 14 | All | 0 |
ORF7a | 47 | H47R | cAt | cGt | 14 | 14 | AY.3 | 0.000139 |
ORF7a | 47 | H47Y | Cat | Tat | 14 | 14 | B.1.1.519 | 0.000556 |
ORF7a | 47 | H47del | CAT | --- | 14 | 14 | B.1.596 | 0.00122 |
ORF7a | 47 | H47N | Cat | Aat | 14 | 14 | B.1.596 | 0.00122 |
ORF7a | 47 | H47R | cAt | cGt | 10 | 14 | B.1.617.2 | 0.000038 |
ORF7a | 47 | H47R | CAT | AGA | 3 | 14 | B.1.617.2 | 0.000011 |
ORF7a | 47 | H47R | cAT | cGC | 1 | 14 | B.1.617.2 | 0.000004 |
ORF7a | 47 | H47del | CAT | --- | 14 | 14 | B.1.637 | 0.001023 |
ORF7a | 47 | H47Y | Cat | Tat | 13 | 13 | AY.119 | 0.000459 |
ORF7a | 47 | H47del | CAT | --- | 13 | 13 | AY.20 | 0.000505 |
ORF7a | 47 | H47H | caT | caC | 13 | 13 | AY.23 | 0.000907 |
ORF7a | 47 | H47H | caT | caC | 13 | 13 | B.1.1.33 | 0.005471 |
ORF7a | 47 | H47H | caT | caC | 13 | 13 | B.1.1.519 | 0.000516 |
ORF7a | 47 | H47L | cAt | cTt | 13 | 13 | B.1.1.7 | 0.000012 |
ORF7a | 47 | H47Y | Cat | Tat | 13 | 13 | B.1.243 | 0.000905 |
ORF7a | 47 | H47N | Cat | Aat | 13 | 13 | P.1.14 | 0.000621 |
ORF7a | 47 | H47V | CAT | GTG | 6 | 12 | All | 0.000001 |
ORF7a | 47 | H47V | CAt | GTt | 4 | 12 | All | 0.000001 |
ORF7a | 47 | H47V | CAT | GTA | 1 | 12 | All | 0 |
ORF7a | 47 | H47V | CAT | GTC | 1 | 12 | All | 0 |
ORF7a | 47 | H47del | CAT | --- | 12 | 12 | AY.102 | 0.000318 |
ORF7a | 47 | H47I | CAT | ATA | 8 | 12 | AY.25 | 0.000048 |
ORF7a | 47 | H47I | CAt | ATt | 3 | 12 | AY.25 | 0.000018 |
ORF7a | 47 | H47I | CAT | ATC | 1 | 12 | AY.25 | 0.000006 |
ORF7a | 47 | H47D | Cat | Gat | 12 | 12 | AY.4 | 0.000019 |
ORF7a | 47 | H47Q | caT | caG | 11 | 12 | AY.4 | 0.000017 |
ORF7a | 47 | H47Q | caT | caA | 1 | 12 | AY.4 | 0.000002 |
ORF7a | 47 | H47R | cAt | cGt | 12 | 12 | AY.59 | 0.006356 |
ORF7a | 47 | H47R | cAt | cGt | 12 | 12 | AY.99.2 | 0.001106 |
ORF7a | 47 | H47Y | Cat | Tat | 12 | 12 | B.1.177.35 | 0.008293 |
ORF7a | 47 | H47N | Cat | Aat | 12 | 12 | B.1.221 | 0.000852 |
ORF7a | 47 | H47del | CAT | --- | 12 | 12 | B.1.324 | 0.019262 |
ORF7a | 47 | H47H | caT | caC | 12 | 12 | B.1.499 | 0.012605 |
ORF7a | 47 | H47Y | Cat | Tat | 12 | 12 | B.1.596 | 0.001046 |
ORF7a | 47 | H47del | CAT | --- | 11 | 11 | AY.120 | 0.000409 |
ORF7a | 47 | H47K | CaT | AaA | 8 | 11 | AY.25 | 0.000048 |
ORF7a | 47 | H47N | Cat | Aat | 8 | 11 | AY.25 | 0.000048 |
ORF7a | 47 | H47del1 | Cat | -at | 7 | 11 | AY.25 | 0.000042 |
ORF7a | 47 | H47del1 | caT | ca- | 4 | 11 | AY.25 | 0.000024 |
ORF7a | 47 | H47K | CaT | AaG | 3 | 11 | AY.25 | 0.000018 |
ORF7a | 47 | H47N | CaT | AaC | 3 | 11 | AY.25 | 0.000018 |
ORF7a | 47 | H47del | CAT | --- | 11 | 11 | AY.35 | 0.002564 |
ORF7a | 47 | H47R | cAt | cGt | 11 | 11 | AY.44 | 0.000067 |
ORF7a | 47 | H47H | caT | caC | 11 | 11 | AY.46 | 0.001145 |
ORF7a | 47 | H47D | Cat | Gat | 11 | 11 | B.1.1.7 | 0.00001 |
ORF7a | 47 | H47N | Cat | Aat | 11 | 11 | B.1.177 | 0.000145 |
ORF7a | 47 | H47F | CAT | TTC | 7 | 11 | B.1.177.21 | 0.000535 |
ORF7a | 47 | H47F | CAt | TTt | 4 | 11 | B.1.177.21 | 0.000306 |
ORF7a | 47 | H47Y | Cat | Tat | 11 | 11 | B.1.258 | 0.000732 |
ORF7a | 47 | H47Y | Cat | Tat | 11 | 11 | B.1.311 | 0.00302 |
ORF7a | 47 | H47del | CAT | --- | 11 | 11 | B.1.429 | 0.000259 |
ORF7a | 47 | H47R | cAt | cGt | 11 | 11 | D.2 | 0.000825 |
ORF7a | 47 | H47H | caT | caC | 11 | 11 | P.1 | 0.000173 |
ORF7a | 47 | H47D | Cat | Gat | 10 | 10 | AY.12 | 0.003161 |
ORF7a | 47 | H47del2 | CAt | --t | 6 | 10 | AY.3 | 0.00006 |
ORF7a | 47 | H47del2 | cAT | c-- | 4 | 10 | AY.3 | 0.00004 |
ORF7a | 47 | H47N | Cat | Aat | 10 | 10 | AY.39 | 0.000247 |
ORF7a | 47 | H47H | caT | caC | 10 | 10 | AY.39.1 | 0.000396 |
ORF7a | 47 | H47Y | Cat | Tat | 10 | 10 | AY.51 | 0.009091 |
ORF7a | 47 | H47Y | Cat | Tat | 10 | 10 | AY.6 | 0.000411 |
ORF7a | 47 | H47del1 | caT | ca- | 6 | 10 | B.1.1.7 | 0.000005 |
ORF7a | 47 | H47del1 | Cat | -at | 3 | 10 | B.1.1.7 | 0.000003 |
ORF7a | 47 | H47del1 | cAt | c-t | 1 | 10 | B.1.1.7 | 0.000001 |
ORF7a | 47 | H47R | cAt | cGt | 10 | 10 | B.1.177.4 | 0.002111 |
ORF7a | 47 | H47Y | Cat | Tat | 10 | 10 | B.1.36.29 | 0.005173 |
ORF7a | 47 | H47Y | Cat | Tat | 10 | 10 | B.1.526 | 0.000235 |
ORF7a | 47 | H47L | cAt | cTt | 5 | 10 | B.1.617.2 | 0.000019 |
ORF7a | 47 | H47L | cAT | cTC | 2 | 10 | B.1.617.2 | 0.000008 |
ORF7a | 47 | H47L | cAT | cTG | 2 | 10 | B.1.617.2 | 0.000008 |
ORF7a | 47 | H47L | CAT | TTA | 1 | 10 | B.1.617.2 | 0.000004 |
ORF7a | 47 | H47del | CAT | --- | 10 | 10 | R.1 | 0.0009 |
ORF7a | 47 | H47P | cAt | cCt | 4 | 9 | AY.25 | 0.000024 |
ORF7a | 47 | H47P | cAT | cCA | 3 | 9 | AY.25 | 0.000018 |
ORF7a | 47 | H47P | cAT | cCC | 1 | 9 | AY.25 | 0.000006 |
ORF7a | 47 | H47P | cAT | cCG | 1 | 9 | AY.25 | 0.000006 |
ORF7a | 47 | H47Y | Cat | Tat | 9 | 9 | AY.29 | 0.000142 |
ORF7a | 47 | H47del | CAT | --- | 9 | 9 | AY.34 | 0.000873 |
ORF7a | 47 | H47N | Cat | Aat | 9 | 9 | AY.44 | 0.000055 |
ORF7a | 47 | H47del | CAT | --- | 9 | 9 | AY.54 | 0.000858 |
ORF7a | 47 | H47P | cAt | cCt | 9 | 9 | B.1.1.7 | 0.000008 |
ORF7a | 47 | H47C | CAt | TGt | 8 | 9 | B.1.617.2 | 0.00003 |
ORF7a | 47 | H47C | CAT | TGC | 1 | 9 | B.1.617.2 | 0.000004 |
ORF7a | 47 | H47N | Cat | Aat | 9 | 9 | B.1.621 | 0.000797 |
ORF7a | 47 | H47del | CAT | --- | 9 | 9 | L.1 | 0.017143 |
ORF7a | 47 | H47H | caT | caC | 8 | 8 | AY.102 | 0.000212 |
ORF7a | 47 | H47Q | caT | caG | 8 | 8 | AY.119 | 0.000282 |
ORF7a | 47 | H47L | cAt | cTt | 8 | 8 | AY.120 | 0.000297 |
ORF7a | 47 | H47del | CAT | --- | 8 | 8 | AY.120.1 | 0.002568 |
ORF7a | 47 | H47C | CAt | TGt | 6 | 8 | AY.25 | 0.000036 |
ORF7a | 47 | H47C | CAT | TGC | 2 | 8 | AY.25 | 0.000012 |
ORF7a | 47 | H47Y | Cat | Tat | 8 | 8 | AY.3.1 | 0.000682 |
ORF7a | 47 | H47F | CAt | TTt | 8 | 8 | AY.3.1 | 0.000682 |
ORF7a | 47 | H47del | CAT | --- | 8 | 8 | AY.98.1 | 0.000387 |
ORF7a | 47 | H47Y | Cat | Tat | 8 | 8 | AY.99.2 | 0.000737 |
ORF7a | 47 | H47E | CaT | GaG | 8 | 8 | B.1.177.21 | 0.000612 |
ORF7a | 47 | H47N | Cat | Aat | 8 | 8 | B.1.429 | 0.000188 |
ORF7a | 47 | H47H | caT | caC | 8 | 8 | B.1.429 | 0.000188 |
ORF7a | 47 | H47N | Cat | Aat | 8 | 8 | B.1.438.1 | 0.000858 |
ORF7a | 47 | H47del | CAT | --- | 8 | 8 | B.1.525 | 0.000905 |
ORF7a | 47 | H47X | CaT | TaA | 4 | 8 | B.1.617.2 | 0.000015 |
ORF7a | 47 | H47X | CAT | TGA | 3 | 8 | B.1.617.2 | 0.000011 |
ORF7a | 47 | H47X | CaT | TaG | 1 | 8 | B.1.617.2 | 0.000004 |
ORF7a | 47 | H47Y | Cat | Tat | 8 | 8 | B.1.93 | 0.00747 |
ORF7a | 47 | H47del | CAT | --- | 7 | 7 | AY.116 | 0.002007 |
ORF7a | 47 | H47Y | Cat | Tat | 7 | 7 | AY.116.1 | 0.00218 |
ORF7a | 47 | H47R | cAt | cGt | 7 | 7 | AY.20 | 0.000272 |
ORF7a | 47 | H47Q | caT | caA | 5 | 7 | AY.25 | 0.00003 |
ORF7a | 47 | H47Q | caT | caG | 2 | 7 | AY.25 | 0.000012 |
ORF7a | 47 | H47del | CAT | --- | 7 | 7 | AY.39.1 | 0.000277 |
ORF7a | 47 | H47del2 | cAT | c-- | 7 | 7 | AY.4 | 0.000011 |
ORF7a | 47 | H47del | CAT | --- | 7 | 7 | AY.4.2 | 0.000152 |
ORF7a | 47 | H47Y | Cat | Tat | 7 | 7 | AY.61 | 0.000733 |
ORF7a | 47 | H47del | CAT | --- | 7 | 7 | B.1.1 | 0.000127 |
ORF7a | 47 | H47L | cAt | cTt | 7 | 7 | B.1.1.519 | 0.000278 |
ORF7a | 47 | H47H | caT | caC | 7 | 7 | B.1.160 | 0.000218 |
ORF7a | 47 | H47del | CAT | --- | 7 | 7 | B.1.160 | 0.000218 |
ORF7a | 47 | H47R | cAt | cGt | 7 | 7 | B.1.160.8 | 0.009021 |
ORF7a | 47 | H47Y | Cat | Tat | 7 | 7 | B.1.162 | 0.035176 |
ORF7a | 47 | H47Y | Cat | Tat | 7 | 7 | B.1.221 | 0.000497 |
ORF7a | 47 | H47Y | Cat | Tat | 7 | 7 | B.1.438.1 | 0.000751 |
ORF7a | 47 | H47S | CAT | TCA | 3 | 7 | B.1.617.2 | 0.000011 |
ORF7a | 47 | H47S | CAt | AGt | 2 | 7 | B.1.617.2 | 0.000008 |
ORF7a | 47 | H47S | CAt | TCt | 2 | 7 | B.1.617.2 | 0.000008 |
ORF7a | 47 | H47Y | Cat | Tat | 7 | 7 | B.1.634 | 0.023973 |
ORF7a | 47 | H47N | Cat | Aat | 7 | 7 | C.36.3 | 0.003971 |
ORF7a | 47 | H47del | CAT | --- | 7 | 7 | P.1.15 | 0.001626 |
ORF7a | 47 | H47G | CAT | GGG | 3 | 6 | All | 0.000001 |
ORF7a | 47 | H47G | CAt | GGt | 2 | 6 | All | 0 |
ORF7a | 47 | H47G | CAT | GGC | 1 | 6 | All | 0 |
ORF7a | 47 | H47Y | Cat | Tat | 6 | 6 | AY.117 | 0.000507 |
ORF7a | 47 | H47del | CAT | --- | 6 | 6 | AY.118 | 0.000376 |
ORF7a | 47 | H47Y | Cat | Tat | 6 | 6 | AY.118 | 0.000376 |
ORF7a | 47 | H47H | caT | caC | 6 | 6 | AY.14 | 0.000528 |
ORF7a | 47 | H47R | cAt | cGt | 6 | 6 | AY.16 | 0.002278 |
ORF7a | 47 | H47del | CAT | --- | 6 | 6 | AY.23 | 0.000418 |
ORF7a | 47 | H47F | CAt | TTt | 6 | 6 | AY.25 | 0.000036 |
ORF7a | 47 | H47G | CAT | GGG | 3 | 6 | AY.25 | 0.000018 |
ORF7a | 47 | H47G | CAt | GGt | 2 | 6 | AY.25 | 0.000012 |
ORF7a | 47 | H47G | CAT | GGC | 1 | 6 | AY.25 | 0.000006 |
ORF7a | 47 | H47Y | Cat | Tat | 6 | 6 | AY.36 | 0.000889 |
ORF7a | 47 | H47H | caT | caC | 6 | 6 | AY.39 | 0.000148 |
ORF7a | 47 | H47Y | Cat | Tat | 6 | 6 | AY.4.5 | 0.000645 |
ORF7a | 47 | H47R | cAt | cGt | 6 | 6 | AY.43 | 0.000027 |
ORF7a | 47 | H47Y | Cat | Tat | 6 | 6 | AY.46.6 | 0.000433 |
ORF7a | 47 | H47Y | Cat | Tat | 6 | 6 | AY.54 | 0.000572 |
ORF7a | 47 | H47Y | Cat | Tat | 6 | 6 | AY.98 | 0.000474 |
ORF7a | 47 | H47Y | Cat | Tat | 6 | 6 | AY.98.1 | 0.000291 |
ORF7a | 47 | H47L | cAt | cTt | 6 | 6 | B.1 | 0.000055 |
ORF7a | 47 | H47H | caT | caC | 6 | 6 | B.1.1 | 0.000109 |
ORF7a | 47 | H47Q | caT | caA | 6 | 6 | B.1.160 | 0.000187 |
ORF7a | 47 | H47Y | Cat | Tat | 6 | 6 | B.1.160.29 | 0.025316 |
ORF7a | 47 | H47H | caT | caC | 6 | 6 | B.1.177.42 | 0.005367 |
ORF7a | 47 | H47del | CAT | --- | 6 | 6 | B.1.234 | 0.000792 |
ORF7a | 47 | H47N | Cat | Aat | 6 | 6 | B.1.241 | 0.00487 |
ORF7a | 47 | H47Y | Cat | Tat | 6 | 6 | B.1.36.8 | 0.006 |
ORF7a | 47 | H47L | cAt | cTt | 6 | 6 | B.1.517 | 0.002562 |
ORF7a | 47 | H47Y | Cat | Tat | 6 | 6 | B.1.563 | 0.101695 |
ORF7a | 47 | H47K | CaT | AaA | 6 | 6 | B.1.617.2 | 0.000023 |
ORF7a | 47 | H47D | Cat | Gat | 3 | 6 | B.1.617.2 | 0.000011 |
ORF7a | 47 | H47V | CAT | GTG | 3 | 6 | B.1.617.2 | 0.000011 |
ORF7a | 47 | H47D | CaT | GaC | 3 | 6 | B.1.617.2 | 0.000011 |
ORF7a | 47 | H47V | CAT | GTC | 1 | 6 | B.1.617.2 | 0.000004 |
ORF7a | 47 | H47V | CAT | GTA | 1 | 6 | B.1.617.2 | 0.000004 |
ORF7a | 47 | H47V | CAt | GTt | 1 | 6 | B.1.617.2 | 0.000004 |
ORF7a | 47 | H47Y | Cat | Tat | 6 | 6 | B.1.621 | 0.000531 |
ORF7a | 47 | H47Y | Cat | Tat | 6 | 6 | Q.1 | 0.000758 |
ORF7a | 47 | H47H | caT | caC | 6 | 6 | R.1 | 0.00054 |
ORF7a | 47 | H47Y | Cat | Tat | 5 | 5 | AY.120.1 | 0.001605 |
ORF7a | 47 | H47Y | Cat | Tat | 5 | 5 | AY.23 | 0.000349 |
ORF7a | 47 | H47H | caT | caC | 5 | 5 | AY.29 | 0.000079 |
ORF7a | 47 | H47H | caT | caC | 5 | 5 | AY.3 | 0.00005 |
ORF7a | 47 | H47Y | Cat | Tat | 5 | 5 | AY.33 | 0.000334 |
ORF7a | 47 | H47Q | caT | caG | 5 | 5 | AY.44 | 0.00003 |
ORF7a | 47 | H47del | CAT | --- | 5 | 5 | AY.45 | 0.000608 |
ORF7a | 47 | H47del | CAT | --- | 5 | 5 | AY.61 | 0.000524 |
ORF7a | 47 | H47del | CAT | --- | 5 | 5 | AY.9.1 | 0.000419 |
ORF7a | 47 | H47del | CAT | --- | 5 | 5 | AY.9.2 | 0.000184 |
ORF7a | 47 | H47del1 | caT | ca- | 4 | 5 | B.1 | 0.000037 |
ORF7a | 47 | H47del1 | cAt | c-t | 1 | 5 | B.1 | 0.000009 |
ORF7a | 47 | H47Y | Cat | Tat | 5 | 5 | B.1.1.189 | 0.007564 |
ORF7a | 47 | H47H | caT | caC | 5 | 5 | B.1.1.47 | 0.026738 |
ORF7a | 47 | H47H | caT | caC | 5 | 5 | B.1.1.526 | 0.01773 |
ORF7a | 47 | H47del | CAT | --- | 5 | 5 | B.1.1.56 | 0.089286 |
ORF7a | 47 | H47Y | Cat | Tat | 5 | 5 | B.1.258.21 | 0.03876 |
ORF7a | 47 | H47Y | Cat | Tat | 5 | 5 | B.1.525 | 0.000566 |
ORF7a | 47 | H47Y | Cat | Tat | 5 | 5 | B.1.587 | 0.009488 |
ORF7a | 47 | H47Y | Cat | Tat | 5 | 5 | B.1.617.1 | 0.000645 |
ORF7a | 47 | H47T | CAT | ACA | 3 | 5 | B.1.617.2 | 0.000011 |
ORF7a | 47 | H47T | CAt | ACt | 2 | 5 | B.1.617.2 | 0.000008 |
ORF7a | 47 | H47Y | Cat | Tat | 5 | 5 | B.1.628 | 0.001762 |
ORF7a | 47 | H47N | Cat | Aat | 5 | 5 | D.2 | 0.000375 |
ORF7a | 47 | H47H | caT | caC | 5 | 5 | Q.3 | 0.000725 |
ORF7a | 47 | H47L | cAt | cTt | 4 | 4 | AY.11 | 0.005355 |
ORF7a | 47 | H47del | CAT | --- | 4 | 4 | AY.113 | 0.00057 |
ORF7a | 47 | H47Y | Cat | Tat | 4 | 4 | AY.114 | 0.000924 |
ORF7a | 47 | H47H | caT | caC | 4 | 4 | AY.119 | 0.000141 |
ORF7a | 47 | H47del | CAT | --- | 4 | 4 | AY.121 | 0.000541 |
ORF7a | 47 | H47V | CAT | GTG | 2 | 4 | AY.25 | 0.000012 |
ORF7a | 47 | H47V | CAt | GTt | 2 | 4 | AY.25 | 0.000012 |
ORF7a | 47 | H47R | cAt | cGt | 4 | 4 | AY.29 | 0.000063 |
ORF7a | 47 | H47N | Cat | Aat | 4 | 4 | AY.3 | 0.00004 |
ORF7a | 47 | H47del | CAT | --- | 4 | 4 | AY.33 | 0.000267 |
ORF7a | 47 | H47D | Cat | Gat | 4 | 4 | AY.33 | 0.000267 |
ORF7a | 47 | H47Y | Cat | Tat | 4 | 4 | AY.39.1 | 0.000158 |
ORF7a | 47 | H47L | cAt | cTt | 4 | 4 | AY.4.2 | 0.000087 |
ORF7a | 47 | H47N | Cat | Aat | 4 | 4 | AY.43 | 0.000018 |
ORF7a | 47 | H47D | Cat | Gat | 4 | 4 | AY.43 | 0.000018 |
ORF7a | 47 | H47Q | caT | caG | 3 | 4 | AY.43 | 0.000013 |
ORF7a | 47 | H47del1 | caT | ca- | 3 | 4 | AY.43 | 0.000013 |
ORF7a | 47 | H47Q | caT | caA | 1 | 4 | AY.43 | 0.000004 |
ORF7a | 47 | H47del1 | Cat | -at | 1 | 4 | AY.43 | 0.000004 |
ORF7a | 47 | H47Y | Cat | Tat | 4 | 4 | AY.45 | 0.000487 |
ORF7a | 47 | H47Y | Cat | Tat | 4 | 4 | AY.7 | 0.000784 |
ORF7a | 47 | H47del | CAT | --- | 4 | 4 | AY.75 | 0.000224 |
ORF7a | 47 | H47Y | Cat | Tat | 4 | 4 | AY.75 | 0.000224 |
ORF7a | 47 | H47del | CAT | --- | 4 | 4 | AY.91 | 0.002922 |
ORF7a | 47 | H47Y | Cat | Tat | 4 | 4 | B | 0.000511 |
ORF7a | 47 | H47Y | Cat | Tat | 4 | 4 | B.1.1.70 | 0.001364 |
ORF7a | 47 | H47N | Cat | Aat | 4 | 4 | B.1.160 | 0.000125 |
ORF7a | 47 | H47R | cAt | cGt | 4 | 4 | B.1.177 | 0.000053 |
ORF7a | 47 | H47Y | Cat | Tat | 4 | 4 | B.1.177.52 | 0.00703 |
ORF7a | 47 | H47Y | Cat | Tat | 4 | 4 | B.1.258.17 | 0.000416 |
ORF7a | 47 | H47Y | Cat | Tat | 4 | 4 | B.1.36 | 0.000584 |
ORF7a | 47 | H47N | Cat | Aat | 4 | 4 | B.1.36.29 | 0.002069 |
ORF7a | 47 | H47Y | Cat | Tat | 4 | 4 | B.1.362 | 0.006163 |
ORF7a | 47 | H47Y | Cat | Tat | 4 | 4 | B.1.459 | 0.016327 |
ORF7a | 47 | H47N | Cat | Aat | 4 | 4 | B.1.526 | 0.000094 |
ORF7a | 47 | H47Y | Cat | Tat | 4 | 4 | B.1.595 | 0.001044 |
ORF7a | 47 | H47H | caT | caC | 4 | 4 | B.1.596 | 0.000349 |
ORF7a | 47 | H47H | caT | caC | 4 | 4 | B.1.609 | 0.001918 |
ORF7a | 47 | H47E | CaT | GaG | 3 | 4 | B.1.617.2 | 0.000011 |
ORF7a | 47 | H47E | CaT | GaA | 1 | 4 | B.1.617.2 | 0.000004 |
ORF7a | 47 | H47R | cAt | cGt | 4 | 4 | B.1.637 | 0.000292 |
ORF7a | 47 | H47N | Cat | Aat | 4 | 4 | C.37 | 0.000464 |
ORF7a | 47 | H47Y | Cat | Tat | 4 | 4 | P.1.2 | 0.004624 |
ORF7a | 47 | H47Y | Cat | Tat | 4 | 4 | P.1.7 | 0.001277 |
ORF7a | 47 | H47Y | Cat | Tat | 4 | 4 | Q.8 | 0.00066 |
ORF7a | 47 | H47Y | Cat | Tat | 3 | 3 | AE.7 | 0.25 |
ORF7a | 47 | H47N | Cat | Aat | 3 | 3 | AY.100 | 0.000138 |
ORF7a | 47 | H47N | Cat | Aat | 3 | 3 | AY.102 | 0.00008 |
ORF7a | 47 | H47Q | caT | caG | 3 | 3 | AY.103 | 0.000019 |
ORF7a | 47 | H47del1 | Cat | -at | 2 | 3 | AY.103 | 0.000012 |
ORF7a | 47 | H47del1 | CAT | -NN | 1 | 3 | AY.103 | 0.000006 |
ORF7a | 47 | H47del | CAT | --- | 3 | 3 | AY.107 | 0.001398 |
ORF7a | 47 | H47del | CAT | --- | 3 | 3 | AY.110 | 0.000338 |
ORF7a | 47 | H47Y | Cat | Tat | 3 | 3 | AY.111 | 0.000549 |
ORF7a | 47 | H47Y | Cat | Tat | 3 | 3 | AY.113 | 0.000427 |
ORF7a | 47 | H47del1 | Cat | -at | 3 | 3 | AY.118 | 0.000188 |
ORF7a | 47 | H47R | cAt | cGt | 3 | 3 | AY.120 | 0.000112 |
ORF7a | 47 | H47Y | Cat | Tat | 3 | 3 | AY.2 | 0.001068 |
ORF7a | 47 | H47H | caT | caC | 3 | 3 | AY.20 | 0.000117 |
ORF7a | 47 | H47D | Cat | Gat | 2 | 3 | AY.25 | 0.000012 |
ORF7a | 47 | H47D | CaT | GaC | 1 | 3 | AY.25 | 0.000006 |
ORF7a | 47 | H47del | CAT | --- | 3 | 3 | AY.29.1 | 0.000662 |
ORF7a | 47 | H47H | caT | caC | 3 | 3 | AY.3.1 | 0.000256 |
ORF7a | 47 | H47Y | Cat | Tat | 3 | 3 | AY.34 | 0.000291 |
ORF7a | 47 | H47P | cAt | cCt | 3 | 3 | AY.4 | 0.000005 |
ORF7a | 47 | H47del1 | Cat | -at | 2 | 3 | AY.4 | 0.000003 |
ORF7a | 47 | H47del1 | CAT | -NN | 1 | 3 | AY.4 | 0.000002 |
ORF7a | 47 | H47del | CAT | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF7a | 47 | H47L | cAt | cTt | 3 | 3 | AY.44 | 0.000018 |
ORF7a | 47 | H47del1 | cAT | c-N | 1 | 3 | AY.44 | 0.000006 |
ORF7a | 47 | H47del1 | Cat | -at | 1 | 3 | AY.44 | 0.000006 |
ORF7a | 47 | H47del1 | caT | ca- | 1 | 3 | AY.44 | 0.000006 |
ORF7a | 47 | H47Y | Cat | Tat | 3 | 3 | AY.46 | 0.000312 |
ORF7a | 47 | H47Y | Cat | Tat | 3 | 3 | AY.46.5 | 0.000595 |
ORF7a | 47 | H47Y | Cat | Tat | 3 | 3 | AY.68 | 0.000821 |
ORF7a | 47 | H47H | caT | caC | 3 | 3 | AY.75 | 0.000168 |
ORF7a | 47 | H47R | cAt | cGt | 3 | 3 | AY.79 | 0.003632 |
ORF7a | 47 | H47del | CAT | --- | 3 | 3 | AY.88 | 0.002653 |
ORF7a | 47 | H47H | caT | caC | 3 | 3 | AY.9.1 | 0.000251 |
ORF7a | 47 | H47Y | Cat | Tat | 3 | 3 | AY.9.2 | 0.00011 |
ORF7a | 47 | H47del | CAT | --- | 3 | 3 | AY.92 | 0.000862 |
ORF7a | 47 | H47H | caT | caC | 3 | 3 | AY.98 | 0.000237 |
ORF7a | 47 | H47del | CAT | --- | 3 | 3 | AY.99 | 0.003148 |
ORF7a | 47 | H47R | cAt | cGt | 3 | 3 | B.1 | 0.000027 |
ORF7a | 47 | H47N | Cat | Aat | 3 | 3 | B.1.1 | 0.000054 |
ORF7a | 47 | H47Q | caT | caG | 2 | 3 | B.1.1 | 0.000036 |
ORF7a | 47 | H47Q | caT | caA | 1 | 3 | B.1.1 | 0.000018 |
ORF7a | 47 | H47del | CAT | --- | 3 | 3 | B.1.1.121 | 0.007282 |
ORF7a | 47 | H47Y | Cat | Tat | 3 | 3 | B.1.1.216 | 0.002671 |
ORF7a | 47 | H47Y | Cat | Tat | 3 | 3 | B.1.1.232 | 0.005445 |
ORF7a | 47 | H47del | CAT | --- | 3 | 3 | B.1.1.25 | 0.001706 |
ORF7a | 47 | H47Y | Cat | Tat | 3 | 3 | B.1.1.306 | 0.001315 |
ORF7a | 47 | H47H | caT | caC | 3 | 3 | B.1.1.397 | 0.006757 |
ORF7a | 47 | H47Y | Cat | Tat | 3 | 3 | B.1.1.464 | 0.004418 |
ORF7a | 47 | H47Y | Cat | Tat | 3 | 3 | B.1.1.487 | 0.01676 |
ORF7a | 47 | H47K | CaT | AaG | 3 | 3 | B.1.1.7 | 0.000003 |
ORF7a | 47 | H47N | Cat | Aat | 3 | 3 | B.1.177.21 | 0.000229 |
ORF7a | 47 | H47Y | Cat | Tat | 3 | 3 | B.1.177.21 | 0.000229 |
ORF7a | 47 | H47N | Cat | Aat | 3 | 3 | B.1.177.54 | 0.001819 |
ORF7a | 47 | H47Y | Cat | Tat | 3 | 3 | B.1.177.86 | 0.00055 |
ORF7a | 47 | H47R | cAt | cGt | 3 | 3 | B.1.2 | 0.000026 |
ORF7a | 47 | H47H | caT | caC | 3 | 3 | B.1.258 | 0.0002 |
ORF7a | 47 | H47N | Cat | Aat | 3 | 3 | B.1.427 | 0.000151 |
ORF7a | 47 | H47del | CAT | --- | 3 | 3 | B.1.427 | 0.000151 |
ORF7a | 47 | H47Y | Cat | Tat | 3 | 3 | B.1.466.2 | 0.001174 |
ORF7a | 47 | H47H | caT | caC | 3 | 3 | B.1.466.2 | 0.001174 |
ORF7a | 47 | H47Y | Cat | Tat | 3 | 3 | B.1.576 | 0.00272 |
ORF7a | 47 | H47Y | Cat | Tat | 3 | 3 | B.1.577 | 0.002062 |
ORF7a | 47 | H47del1 | cAt | c-t | 1 | 3 | B.1.617.2 | 0.000004 |
ORF7a | 47 | H47del1 | caT | ca- | 1 | 3 | B.1.617.2 | 0.000004 |
ORF7a | 47 | H47del1 | Cat | -at | 1 | 3 | B.1.617.2 | 0.000004 |
ORF7a | 47 | H47del | CAT | --- | 3 | 3 | B.1.626 | 0.017143 |
ORF7a | 47 | H47Y | Cat | Tat | 3 | 3 | B.1.637 | 0.000219 |
ORF7a | 47 | H47Y | Cat | Tat | 3 | 3 | D.2 | 0.000225 |
ORF7a | 47 | H47R | cAt | cGt | 3 | 3 | P.1 | 0.000047 |
ORF7a | 47 | H47Y | Cat | Tat | 3 | 3 | P.1.1 | 0.000953 |
ORF7a | 47 | H47Y | Cat | Tat | 3 | 3 | P.2 | 0.00056 |
ORF7a | 47 | H47Y | Cat | Tat | 3 | 3 | Q.3 | 0.000435 |
ORF7a | 47 | H47C | CAt | TGt | 2 | 2 | 0.111111 | |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | 0.111111 | |
ORF7a | 47 | H47R | cAt | cGt | 2 | 2 | 0.111111 | |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | A | 0.000774 |
ORF7a | 47 | H47R | cAt | cGt | 2 | 2 | A.2.5 | 0.000998 |
ORF7a | 47 | H47N | Cat | Aat | 2 | 2 | A.2.5 | 0.000998 |
ORF7a | 47 | H47N | Cat | Aat | 2 | 2 | A.23.1 | 0.001408 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | A.28 | 0.005291 |
ORF7a | 47 | H47M | CAT | ATG | 2 | 2 | All | 0 |
ORF7a | 47 | H47W | CAT | TGG | 2 | 2 | All | 0 |
ORF7a | 47 | H47H | caT | caC | 2 | 2 | AY.100 | 0.000092 |
ORF7a | 47 | H47D | Cat | Gat | 2 | 2 | AY.102 | 0.000053 |
ORF7a | 47 | H47R | cAt | cGt | 2 | 2 | AY.103 | 0.000012 |
ORF7a | 47 | H47N | Cat | Aat | 2 | 2 | AY.103 | 0.000012 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | AY.108 | 0.002205 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | AY.109 | 0.001479 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | AY.114 | 0.000462 |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | AY.121 | 0.000271 |
ORF7a | 47 | H47R | cAt | cGt | 2 | 2 | AY.121 | 0.000271 |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | AY.14 | 0.000176 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | AY.14 | 0.000176 |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | AY.16 | 0.000759 |
ORF7a | 47 | H47N | Cat | Aat | 2 | 2 | AY.20 | 0.000078 |
ORF7a | 47 | H47N | Cat | Aat | 2 | 2 | AY.23 | 0.000139 |
ORF7a | 47 | H47E | CaT | GaG | 2 | 2 | AY.25 | 0.000012 |
ORF7a | 47 | H47W | CAT | TGG | 2 | 2 | AY.25 | 0.000012 |
ORF7a | 47 | H47M | CAT | ATG | 2 | 2 | AY.25 | 0.000012 |
ORF7a | 47 | H47del2 | CAt | --t | 1 | 2 | AY.25 | 0.000006 |
ORF7a | 47 | H47del2 | cAT | c-- | 1 | 2 | AY.25 | 0.000006 |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | AY.27 | 0.000129 |
ORF7a | 47 | H47R | cAt | cGt | 2 | 2 | AY.27 | 0.000129 |
ORF7a | 47 | H47L | cAt | cTt | 2 | 2 | AY.29 | 0.000032 |
ORF7a | 47 | H47del1 | caT | ca- | 2 | 2 | AY.29 | 0.000032 |
ORF7a | 47 | H47H | caT | caC | 2 | 2 | AY.29.1 | 0.000441 |
ORF7a | 47 | H47del1 | Cat | -at | 2 | 2 | AY.3.1 | 0.000171 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | AY.30 | 0.000791 |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | AY.32 | 0.001065 |
ORF7a | 47 | H47N | Cat | Aat | 2 | 2 | AY.33 | 0.000134 |
ORF7a | 47 | H47del1 | caT | ca- | 2 | 2 | AY.36 | 0.000296 |
ORF7a | 47 | H47H | caT | caC | 2 | 2 | AY.4.2 | 0.000043 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | AY.4.3 | 0.001684 |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | AY.4.4 | 0.000818 |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | AY.41 | 0.000588 |
ORF7a | 47 | H47P | cAt | cCt | 2 | 2 | AY.43 | 0.000009 |
ORF7a | 47 | H47L | CAT | TTG | 1 | 2 | AY.43 | 0.000004 |
ORF7a | 47 | H47L | cAt | cTt | 1 | 2 | AY.43 | 0.000004 |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | AY.46.4 | 0.000329 |
ORF7a | 47 | H47H | caT | caC | 2 | 2 | AY.47 | 0.000062 |
ORF7a | 47 | H47Q | caT | caG | 2 | 2 | AY.5 | 0.000041 |
ORF7a | 47 | H47N | Cat | Aat | 2 | 2 | AY.5 | 0.000041 |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | AY.56 | 0.00321 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | AY.57 | 0.001312 |
ORF7a | 47 | H47H | caT | caC | 2 | 2 | AY.6 | 0.000082 |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | AY.63 | 0.000774 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | AY.66 | 0.002139 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | AY.71 | 0.00095 |
ORF7a | 47 | H47N | Cat | Aat | 2 | 2 | AY.75 | 0.000112 |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | AY.75.1 | 0.000361 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | AY.85 | 0.000854 |
ORF7a | 47 | H47H | caT | caC | 2 | 2 | AY.88 | 0.001768 |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | AY.88 | 0.001768 |
ORF7a | 47 | H47H | caT | caC | 2 | 2 | AY.9 | 0.000135 |
ORF7a | 47 | H47N | Cat | Aat | 2 | 2 | AY.9 | 0.000135 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | AY.9 | 0.000135 |
ORF7a | 47 | H47P | cAt | cCt | 2 | 2 | AY.9.1 | 0.000167 |
ORF7a | 47 | H47del2 | cAT | c-- | 2 | 2 | AY.95 | 0.001522 |
ORF7a | 47 | H47R | cAt | cGt | 2 | 2 | AY.98.1 | 0.000097 |
ORF7a | 47 | H47N | Cat | Aat | 2 | 2 | AY.98.1 | 0.000097 |
ORF7a | 47 | H47H | caT | caC | 2 | 2 | AY.98.1 | 0.000097 |
ORF7a | 47 | H47del2 | cAT | c-- | 2 | 2 | AY.99.2 | 0.000184 |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | B.1.1.1 | 0.000653 |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | B.1.1.133 | 0.016949 |
ORF7a | 47 | H47R | cAt | cGt | 2 | 2 | B.1.1.153 | 0.002191 |
ORF7a | 47 | H47R | cAt | cGt | 2 | 2 | B.1.1.214 | 0.000111 |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | B.1.1.236 | 0.013793 |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | B.1.1.294 | 0.002532 |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | B.1.1.318 | 0.000604 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | B.1.1.318 | 0.000604 |
ORF7a | 47 | H47N | Cat | Aat | 2 | 2 | B.1.1.359 | 0.055556 |
ORF7a | 47 | H47Q | caT | caA | 2 | 2 | B.1.1.39 | 0.001019 |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | B.1.1.402 | 0.022222 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | B.1.1.519 | 0.000079 |
ORF7a | 47 | H47H | caT | caC | 2 | 2 | B.1.1.61 | 0.017544 |
ORF7a | 47 | H47N | Cat | Aat | 2 | 2 | B.1.160.17 | 0.003401 |
ORF7a | 47 | H47L | cAt | cTt | 2 | 2 | B.1.177 | 0.000026 |
ORF7a | 47 | H47H | caT | caC | 2 | 2 | B.1.177 | 0.000026 |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | B.1.177.4 | 0.000422 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | B.1.177.43 | 0.002954 |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | B.1.177.44 | 0.001038 |
ORF7a | 47 | H47Q | caT | caA | 2 | 2 | B.1.177.44 | 0.001038 |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | B.1.177.7 | 0.00033 |
ORF7a | 47 | H47R | cAt | cGt | 2 | 2 | B.1.177.7 | 0.00033 |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | B.1.177.81 | 0.000379 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | B.1.177.81 | 0.000379 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | B.1.177.86 | 0.000367 |
ORF7a | 47 | H47Q | caT | caG | 2 | 2 | B.1.2 | 0.000018 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | B.1.214.2 | 0.001199 |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | B.1.239 | 0.002442 |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | B.1.240 | 0.000431 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | B.1.243 | 0.000139 |
ORF7a | 47 | H47R | cAt | cGt | 2 | 2 | B.1.243 | 0.000139 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | B.1.258.11 | 0.000793 |
ORF7a | 47 | H47H | caT | caC | 2 | 2 | B.1.258.17 | 0.000208 |
ORF7a | 47 | H47H | caT | caC | 2 | 2 | B.1.311 | 0.000549 |
ORF7a | 47 | H47H | caT | caC | 2 | 2 | B.1.323 | 0.041667 |
ORF7a | 47 | H47Q | caT | caA | 1 | 2 | B.1.351 | 0.00003 |
ORF7a | 47 | H47Q | caT | caG | 1 | 2 | B.1.351 | 0.00003 |
ORF7a | 47 | H47N | Cat | Aat | 2 | 2 | B.1.36.36 | 0.001204 |
ORF7a | 47 | H47H | caT | caC | 2 | 2 | B.1.369 | 0.00057 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | B.1.375 | 0.001639 |
ORF7a | 47 | H47Q | caT | caG | 1 | 2 | B.1.416.1 | 0.001563 |
ORF7a | 47 | H47Q | caT | caA | 1 | 2 | B.1.416.1 | 0.001563 |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | B.1.468 | 0.011429 |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | B.1.524 | 0.002813 |
ORF7a | 47 | H47H | caT | caC | 2 | 2 | B.1.526 | 0.000047 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | B.1.575 | 0.000607 |
ORF7a | 47 | H47N | Cat | Aat | 2 | 2 | B.1.617.1 | 0.000258 |
ORF7a | 47 | H47F | CAt | TTt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF7a | 47 | H47I | CAt | ATt | 1 | 2 | B.1.617.2 | 0.000004 |
ORF7a | 47 | H47I | CAT | ATC | 1 | 2 | B.1.617.2 | 0.000004 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | B.1.617.3 | 0.00597 |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | B.1.619 | 0.001742 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | B.1.621.1 | 0.001012 |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | B.1.621.1 | 0.001012 |
ORF7a | 47 | H47H | caT | caC | 2 | 2 | B.1.637 | 0.000146 |
ORF7a | 47 | H47N | Cat | Aat | 2 | 2 | C.16 | 0.002121 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | C.36.3 | 0.001134 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | P.1.14 | 0.000096 |
ORF7a | 47 | H47Y | Cat | Tat | 2 | 2 | P.1.4 | 0.001953 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | P.2 | 0.000373 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | Q.8 | 0.00033 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | A | 0.000387 |
ORF7a | 47 | H47Q | caT | caG | 1 | 1 | A | 0.000387 |
ORF7a | 47 | H47Q | caT | caA | 1 | 1 | A.1 | 0.000282 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | A.1 | 0.000282 |
ORF7a | 47 | H47del1 | Cat | -at | 1 | 1 | A.2 | 0.000662 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | A.2.5 | 0.000499 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | A.2.5.2 | 0.001572 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | A.2.5.3 | 0.010309 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | A.2.5.3 | 0.010309 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | A.23.1 | 0.000704 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | A.23.1 | 0.000704 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | AA.1 | 0.007246 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | AE.3 | 0.032258 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | AE.8 | 0.000489 |
ORF7a | 47 | H47A | CAT | GCA | 1 | 1 | All | 0 |
ORF7a | 47 | H47R | cAt | cGt | 1 | 1 | AY.1 | 0.000396 |
ORF7a | 47 | H47Q | caT | caA | 1 | 1 | AY.100 | 0.000046 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.101 | 0.00049 |
ORF7a | 47 | H47R | cAt | cGt | 1 | 1 | AY.102 | 0.000027 |
ORF7a | 47 | H47del1 | Cat | -at | 1 | 1 | AY.102 | 0.000027 |
ORF7a | 47 | H47del2 | cAT | c-- | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 47 | H47R | cAt | cGt | 1 | 1 | AY.104 | 0.001984 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | AY.105 | 0.000643 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | AY.106 | 0.000335 |
ORF7a | 47 | H47P | cAt | cCt | 1 | 1 | AY.107 | 0.000466 |
ORF7a | 47 | H47R | cAt | cGt | 1 | 1 | AY.109 | 0.00074 |
ORF7a | 47 | H47R | cAt | cGt | 1 | 1 | AY.110 | 0.000113 |
ORF7a | 47 | H47Q | caT | caG | 1 | 1 | AY.111 | 0.000183 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | AY.113 | 0.000142 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | AY.114 | 0.000231 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | AY.116.1 | 0.000311 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.116.1 | 0.000311 |
ORF7a | 47 | H47D | Cat | Gat | 1 | 1 | AY.117 | 0.000085 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | AY.117 | 0.000085 |
ORF7a | 47 | H47D | Cat | Gat | 1 | 1 | AY.118 | 0.000063 |
ORF7a | 47 | H47D | Cat | Gat | 1 | 1 | AY.121 | 0.000135 |
ORF7a | 47 | H47A | CAT | GCA | 1 | 1 | AY.13 | 0.000161 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.13 | 0.000161 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | AY.13 | 0.000161 |
ORF7a | 47 | H47del1 | caT | ca- | 1 | 1 | AY.14 | 0.000088 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | AY.16 | 0.00038 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.16 | 0.00038 |
ORF7a | 47 | H47L | cAt | cTt | 1 | 1 | AY.20 | 0.000039 |
ORF7a | 47 | H47Q | caT | caG | 1 | 1 | AY.20 | 0.000039 |
ORF7a | 47 | H47del1 | caT | ca- | 1 | 1 | AY.23 | 0.00007 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.24 | 0.000431 |
ORF7a | 47 | H47R | cAt | cGt | 1 | 1 | AY.26 | 0.000028 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | AY.27 | 0.000065 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 47 | H47D | Cat | Gat | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 47 | H47del1 | Cat | -at | 1 | 1 | AY.3 | 0.00001 |
ORF7a | 47 | H47D | Cat | Gat | 1 | 1 | AY.3 | 0.00001 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | AY.3.1 | 0.000085 |
ORF7a | 47 | H47L | cAt | cTt | 1 | 1 | AY.3.1 | 0.000085 |
ORF7a | 47 | H47Q | caT | caG | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | AY.35 | 0.000233 |
ORF7a | 47 | H47R | cAt | cGt | 1 | 1 | AY.36 | 0.000148 |
ORF7a | 47 | H47del2 | cAT | c-- | 1 | 1 | AY.36 | 0.000148 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | AY.36 | 0.000148 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | AY.37 | 0.000316 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.38 | 0.000499 |
ORF7a | 47 | H47Q | caT | caA | 1 | 1 | AY.39 | 0.000025 |
ORF7a | 47 | H47D | Cat | Gat | 1 | 1 | AY.39 | 0.000025 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | AY.39.1 | 0.00004 |
ORF7a | 47 | H47R | cAt | cGt | 1 | 1 | AY.4.2 | 0.000022 |
ORF7a | 47 | H47L | cAt | cTt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF7a | 47 | H47P | cAt | cCt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | AY.4.5 | 0.000107 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | AY.40 | 0.000964 |
ORF7a | 47 | H47Q | caT | caA | 1 | 1 | AY.42 | 0.00004 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | AY.42 | 0.00004 |
ORF7a | 47 | H47del2 | CAt | --t | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 47 | H47V | CAT | GTG | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 47 | H47D | Cat | Gat | 1 | 1 | AY.44 | 0.000006 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | AY.45 | 0.000122 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | AY.45 | 0.000122 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.46 | 0.000104 |
ORF7a | 47 | H47R | cAt | cGt | 1 | 1 | AY.46.4 | 0.000165 |
ORF7a | 47 | H47del1 | Cat | -at | 1 | 1 | AY.46.6 | 0.000072 |
ORF7a | 47 | H47D | Cat | Gat | 1 | 1 | AY.47 | 0.000031 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | AY.47 | 0.000031 |
ORF7a | 47 | H47R | cAt | cGt | 1 | 1 | AY.47 | 0.000031 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | AY.48 | 0.000465 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | AY.5 | 0.000021 |
ORF7a | 47 | H47del1 | Cat | -at | 1 | 1 | AY.5 | 0.000021 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.5.4 | 0.000277 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | AY.53 | 0.000288 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | AY.53 | 0.000288 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.53 | 0.000288 |
ORF7a | 47 | H47C | CAt | TGt | 1 | 1 | AY.54 | 0.000095 |
ORF7a | 47 | H47R | cAt | cGt | 1 | 1 | AY.54 | 0.000095 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | AY.54 | 0.000095 |
ORF7a | 47 | H47Q | caT | caG | 1 | 1 | AY.54 | 0.000095 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | AY.57 | 0.000656 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | AY.59 | 0.00053 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.59 | 0.00053 |
ORF7a | 47 | H47R | cAt | cGt | 1 | 1 | AY.6 | 0.000041 |
ORF7a | 47 | H47L | cAt | cTt | 1 | 1 | AY.60 | 0.000938 |
ORF7a | 47 | H47L | cAt | cTt | 1 | 1 | AY.61 | 0.000105 |
ORF7a | 47 | H47R | cAt | cGt | 1 | 1 | AY.61 | 0.000105 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | AY.61 | 0.000105 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | AY.62 | 0.000436 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | AY.64 | 0.000595 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | AY.67 | 0.000464 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | AY.67 | 0.000464 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.68 | 0.000274 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | AY.69 | 0.000187 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | AY.69 | 0.000187 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.7 | 0.000196 |
ORF7a | 47 | H47L | cAt | cTt | 1 | 1 | AY.7.1 | 0.000113 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | AY.7.1 | 0.000113 |
ORF7a | 47 | H47Y | CaT | TaC | 1 | 1 | AY.7.1 | 0.000113 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.7.1 | 0.000113 |
ORF7a | 47 | H47del1 | caT | ca- | 1 | 1 | AY.7.2 | 0.000559 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | AY.70 | 0.000209 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | AY.71 | 0.000475 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | AY.71 | 0.000475 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | AY.73 | 0.000665 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.73 | 0.000665 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | AY.74 | 0.000116 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.74 | 0.000116 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | AY.74 | 0.000116 |
ORF7a | 47 | H47Q | caT | caA | 1 | 1 | AY.75 | 0.000056 |
ORF7a | 47 | H47del1 | caT | ca- | 1 | 1 | AY.75 | 0.000056 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | AY.75.1 | 0.00018 |
ORF7a | 47 | H47Q | caT | caG | 1 | 1 | AY.75.1 | 0.00018 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.79 | 0.001211 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | AY.79 | 0.001211 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.8 | 0.000606 |
ORF7a | 47 | H47R | cAt | cGt | 1 | 1 | AY.85 | 0.000427 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 47 | H47R | cAt | cGt | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | AY.91 | 0.00073 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | AY.93 | 0.000273 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.94 | 0.000443 |
ORF7a | 47 | H47del2 | CAt | --t | 1 | 1 | AY.98 | 0.000079 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.98 | 0.000079 |
ORF7a | 47 | H47del1 | caT | ca- | 1 | 1 | AY.99 | 0.001049 |
ORF7a | 47 | H47Q | caT | caA | 1 | 1 | AY.99.2 | 0.000092 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | AY.99.2 | 0.000092 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.99.2 | 0.000092 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B | 0.000128 |
ORF7a | 47 | H47Q | caT | caA | 1 | 1 | B | 0.000128 |
ORF7a | 47 | H47F | CAT | TTC | 1 | 1 | B.1 | 0.000009 |
ORF7a | 47 | H47R | cAt | cGt | 1 | 1 | B.1.1 | 0.000018 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.1.135 | 0.004695 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.1.152 | 0.04 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | B.1.1.157 | 0.000913 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.1.157 | 0.000913 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.1.157 | 0.000913 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | B.1.1.172 | 0.018182 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.1.174 | 0.003378 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.1.176 | 0.000439 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.1.192 | 0.002309 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.1.216 | 0.00089 |
ORF7a | 47 | H47del1 | caT | ca- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.1.240 | 0.004695 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.1.25 | 0.000569 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.1.25 | 0.000569 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.1.255 | 0.00303 |
ORF7a | 47 | H47R | cAt | cGt | 1 | 1 | B.1.1.263 | 0.001558 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.1.279 | 0.001121 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.1.28 | 0.000311 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.1.284 | 0.000107 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.1.284 | 0.000107 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.1.302 | 0.002075 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.1.304 | 0.002809 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.1.304 | 0.002809 |
ORF7a | 47 | H47L | cAt | cTt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.1.309 | 0.005848 |
ORF7a | 47 | H47L | cAt | cTt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF7a | 47 | H47Q | caT | caA | 1 | 1 | B.1.1.33 | 0.000421 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.1.33 | 0.000421 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | B.1.1.334 | 0.016393 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.1.368 | 0.003086 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.1.37 | 0.000193 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.1.374 | 0.002375 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | B.1.1.387 | 0.058824 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | B.1.1.409 | 0.002833 |
ORF7a | 47 | H47Q | caT | caA | 1 | 1 | B.1.1.445 | 0.037037 |
ORF7a | 47 | H47R | cAt | cGt | 1 | 1 | B.1.1.486 | 0.001577 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.1.486 | 0.001577 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.1.487 | 0.005587 |
ORF7a | 47 | H47R | cAt | cGt | 1 | 1 | B.1.1.521 | 0.005348 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.1.522 | 0.017241 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.1.523 | 0.001563 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.1.523 | 0.001563 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.1.63 | 0.000386 |
ORF7a | 47 | H47del2 | CAt | --t | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 47 | H47I | CAt | ATt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 47 | H47F | CAt | TTt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.105 | 0.009615 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.110.3 | 0.000718 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.115 | 0.021739 |
ORF7a | 47 | H47Q | caT | caG | 1 | 1 | B.1.139 | 0.000733 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | B.1.139 | 0.000733 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF7a | 47 | H47L | cAt | cTt | 1 | 1 | B.1.160.10 | 0.008065 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.160.16 | 0.000929 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.160.22 | 0.006757 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.160.28 | 0.002924 |
ORF7a | 47 | H47Q | caT | caA | 1 | 1 | B.1.160.29 | 0.004219 |
ORF7a | 47 | H47P | cAt | cCt | 1 | 1 | B.1.160.29 | 0.004219 |
ORF7a | 47 | H47del1 | caT | ca- | 1 | 1 | B.1.160.30 | 0.002976 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.160.32 | 0.004292 |
ORF7a | 47 | H47Q | caT | caA | 1 | 1 | B.1.160.32 | 0.004292 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.160.8 | 0.001289 |
ORF7a | 47 | H47Q | caT | caG | 1 | 1 | B.1.170 | 0.00431 |
ORF7a | 47 | H47F | CAt | TTt | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 47 | H47del1 | caT | ca- | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 47 | H47I | CAt | ATt | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 47 | H47R | cAt | cGt | 1 | 1 | B.1.177.11 | 0.001698 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.177.12 | 0.000152 |
ORF7a | 47 | H47R | cAt | cGt | 1 | 1 | B.1.177.12 | 0.000152 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.177.12 | 0.000152 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.177.20 | 0.001517 |
ORF7a | 47 | H47K | CaT | AaG | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.177.40 | 0.005155 |
ORF7a | 47 | H47Q | caT | caA | 1 | 1 | B.1.177.43 | 0.001477 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.177.43 | 0.001477 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.177.51 | 0.004566 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.177.51 | 0.004566 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | B.1.177.56 | 0.000668 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.177.60 | 0.000218 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.177.62 | 0.001192 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.177.73 | 0.000566 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.177.75 | 0.001041 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.177.77 | 0.000726 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.177.8 | 0.000752 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.177.82 | 0.000477 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.177.83 | 0.001481 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.177.86 | 0.000183 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | B.1.177.87 | 0.000728 |
ORF7a | 47 | H47T | CAt | ACt | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 47 | H47del1 | cAt | c-t | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 47 | H47L | cAt | cTt | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 47 | H47D | Cat | Gat | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.214 | 0.003663 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | B.1.22 | 0.001318 |
ORF7a | 47 | H47Q | caT | caA | 1 | 1 | B.1.221 | 0.000071 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | B.1.221 | 0.000071 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.223 | 0.002778 |
ORF7a | 47 | H47L | cAt | cTt | 1 | 1 | B.1.232 | 0.000537 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.237 | 0.004975 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.240 | 0.000216 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.241 | 0.000812 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | B.1.243 | 0.00007 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.258.12 | 0.007874 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.279 | 0.000514 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | B.1.301 | 0.005917 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | B.1.304 | 0.023256 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | B.1.320 | 0.001245 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.338 | 0.008621 |
ORF7a | 47 | H47L | cAt | cTt | 1 | 1 | B.1.351 | 0.00003 |
ORF7a | 47 | H47R | cAt | cGt | 1 | 1 | B.1.351 | 0.00003 |
ORF7a | 47 | H47V | CAt | GTt | 1 | 1 | B.1.351 | 0.00003 |
ORF7a | 47 | H47D | Cat | Gat | 1 | 1 | B.1.351 | 0.00003 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | B.1.351 | 0.00003 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.351 | 0.00003 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.351.2 | 0.000303 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | B.1.351.2 | 0.000303 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.351.3 | 0.000876 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.351.3 | 0.000876 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.356 | 0.001727 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | B.1.36 | 0.000146 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.36 | 0.000146 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | B.1.36.10 | 0.004785 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.36.16 | 0.001425 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | B.1.36.22 | 0.001208 |
ORF7a | 47 | H47del1 | caT | ca- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF7a | 47 | H47del2 | CAt | --t | 1 | 1 | B.1.361 | 0.001289 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.361 | 0.001289 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.369 | 0.000285 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.371 | 0.001122 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.375 | 0.00082 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.396 | 0.000706 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | B.1.396 | 0.000706 |
ORF7a | 47 | H47Q | caT | caG | 1 | 1 | B.1.398 | 0.002976 |
ORF7a | 47 | H47Q | caT | caA | 1 | 1 | B.1.399 | 0.001934 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.400 | 0.000429 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.406 | 0.006061 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | B.1.415 | 0.014286 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.416 | 0.001269 |
ORF7a | 47 | H47del1 | caT | ca- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF7a | 47 | H47del1 | Cat | -at | 1 | 1 | B.1.427 | 0.00005 |
ORF7a | 47 | H47L | cAt | cTt | 1 | 1 | B.1.427 | 0.00005 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | B.1.427 | 0.00005 |
ORF7a | 47 | H47D | Cat | Gat | 1 | 1 | B.1.438.1 | 0.000107 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.438.1 | 0.000107 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.445 | 0.011765 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.459 | 0.004082 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7a | 47 | H47Q | caT | caA | 1 | 1 | B.1.468 | 0.005714 |
ORF7a | 47 | H47del1 | caT | ca- | 1 | 1 | B.1.468 | 0.005714 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.468 | 0.005714 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.469 | 0.00361 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.470 | 0.001404 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | B.1.470 | 0.001404 |
ORF7a | 47 | H47Q | caT | caA | 1 | 1 | B.1.473 | 0.019231 |
ORF7a | 47 | H47P | cAt | cCt | 1 | 1 | B.1.497 | 0.000315 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.497 | 0.000315 |
ORF7a | 47 | H47Q | caT | caA | 1 | 1 | B.1.497 | 0.000315 |
ORF7a | 47 | H47Q | caT | caA | 1 | 1 | B.1.520 | 0.021739 |
ORF7a | 47 | H47del1 | caT | ca- | 1 | 1 | B.1.525 | 0.000113 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | B.1.525 | 0.000113 |
ORF7a | 47 | H47L | cAt | cTt | 1 | 1 | B.1.526 | 0.000024 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.535 | 0.028571 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.545 | 0.014493 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | B.1.548 | 0.035714 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | B.1.558 | 0.004566 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.564.1 | 0.001577 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.565 | 0.00081 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.568 | 0.001111 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.575.1 | 0.002439 |
ORF7a | 47 | H47I | CAt | ATt | 1 | 1 | B.1.576 | 0.000907 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.576 | 0.000907 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.576 | 0.000907 |
ORF7a | 47 | H47F | CAt | TTt | 1 | 1 | B.1.576 | 0.000907 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.579 | 0.011236 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.582 | 0.000491 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | B.1.588 | 0.00091 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.595 | 0.000261 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.609 | 0.000479 |
ORF7a | 47 | H47del1 | caT | ca- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 47 | H47F | CAt | TTt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 47 | H47Q | caT | caG | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 47 | H47del2 | CAT | --W | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | B.1.620 | 0.000946 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.1.635 | 0.017544 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.9.1 | 0.032258 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.3 | 0.000831 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.4 | 0.002208 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | B.40 | 0.000364 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.55 | 0.00295 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | B.6 | 0.00091 |
ORF7a | 47 | H47L | cAt | cTt | 1 | 1 | B.6.6 | 0.000889 |
ORF7a | 47 | H47R | cAt | cGt | 1 | 1 | C.31 | 0.017857 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | C.35 | 0.000774 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | C.36 | 0.000911 |
ORF7a | 47 | H47del1 | Cat | -at | 1 | 1 | C.37 | 0.000116 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | C.37.1 | 0.002618 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | D.2 | 0.000075 |
ORF7a | 47 | H47L | cAt | cTt | 1 | 1 | D.2 | 0.000075 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | K.3 | 0.006173 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | N.5 | 0.001767 |
ORF7a | 47 | H47L | cAt | cTt | 1 | 1 | N.5 | 0.001767 |
ORF7a | 47 | H47R | cAt | cGt | 1 | 1 | N.5 | 0.001767 |
ORF7a | 47 | H47L | cAt | cTt | 1 | 1 | P.1 | 0.000016 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | P.1.1 | 0.000318 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | P.1.11 | 0.010204 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | P.1.12 | 0.000484 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | P.1.13 | 0.000898 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | P.1.15 | 0.000232 |
ORF7a | 47 | H47P | cAt | cCt | 1 | 1 | P.1.15 | 0.000232 |
ORF7a | 47 | H47D | Cat | Gat | 1 | 1 | P.1.15 | 0.000232 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | P.1.16 | 0.000374 |
ORF7a | 47 | H47del1 | Cat | -at | 1 | 1 | P.1.17 | 0.000162 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | P.1.17 | 0.000162 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | P.1.17 | 0.000162 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | P.1.3 | 0.034483 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | P.1.4 | 0.000977 |
ORF7a | 47 | H47H | caT | caC | 1 | 1 | P.2 | 0.000187 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | P.4 | 0.003802 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | P.7 | 0.004367 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | Q.3 | 0.000145 |
ORF7a | 47 | H47L | cAT | cTC | 1 | 1 | Q.4 | 0.000455 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | Q.7 | 0.001111 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | Q.8 | 0.000165 |
ORF7a | 47 | H47N | Cat | Aat | 1 | 1 | R.1 | 0.00009 |
ORF7a | 47 | H47Y | Cat | Tat | 1 | 1 | Z.1 | 0.00289 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|