CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 47

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a47H47YnonsynCatTat522352140.99827727532-27534
ORF7a47H47YnonsynCaTTaC522390.0017231527532-27534
ORF7a47H47deldelCAT---32383238127532-27534
ORF7a47H47NnonsynCatAat160315930.99376227532-27534
ORF7a47H47NnonsynCaTAaC1603100.006238327532-27534
ORF7a47H47HsyncaTcaC15531553127532-27534
ORF7a47H47RnonsyncAtcGt3753580.95466727532-27534
ORF7a47H47RnonsynCATAGA375100.026666727532-27534
ORF7a47H47RnonsyncATcGC37540.010666727532-27534
ORF7a47H47RnonsynCATAGG37510.0026666727532-27534
ORF7a47H47RnonsyncATcGG37510.0026666727532-27534
ORF7a47H47RnonsyncATcGA37510.0026666727532-27534
ORF7a47H47LnonsyncAtcTt1771520.85875727532-27534
ORF7a47H47LnonsynCATTTA17790.050847527532-27534
ORF7a47H47LnonsyncATcTC17750.028248627532-27534
ORF7a47H47LnonsynCATTTG17750.028248627532-27534
ORF7a47H47LnonsyncATcTA17740.022598927532-27534
ORF7a47H47LnonsyncATcTG17720.011299427532-27534
ORF7a47H47QnonsyncaTcaA155910.58709727532-27534
ORF7a47H47QnonsyncaTcaG155640.41290327532-27534
ORF7a47H47del1delcaTca-118570.48305127532-27534
ORF7a47H47del1delCat-at118540.45762727532-27534
ORF7a47H47del1delcAtc-t11840.033898327532-27534
ORF7a47H47del1delCAT-NN11820.016949227532-27534
ORF7a47H47del1delcATc-N11810.0084745827532-27534
ORF7a47H47DnonsynCatGat64600.937527532-27534
ORF7a47H47DnonsynCaTGaC6440.062527532-27534
ORF7a47H47PnonsyncAtcCt56500.89285727532-27534
ORF7a47H47PnonsyncATcCA5630.053571427532-27534
ORF7a47H47PnonsyncATcCC5620.035714327532-27534
ORF7a47H47PnonsyncATcCG5610.017857127532-27534
ORF7a47H47FnonsynCAtTTt32240.7527532-27534
ORF7a47H47FnonsynCATTTC3280.2527532-27534
ORF7a47H47del2delcATc--30180.627532-27534
ORF7a47H47SnonsynCATTCA30110.36666727532-27534
ORF7a47H47del2delCAt--t30110.36666727532-27534
ORF7a47H47SnonsynCAtTCt3060.227532-27534
ORF7a47H47SnonsynCAtAGt3050.16666727532-27534
ORF7a47H47SnonsynCATAGC3030.127532-27534
ORF7a47H47SnonsynCATTCG3030.127532-27534
ORF7a47H47SnonsynCATTCC3020.066666727532-27534
ORF7a47H47del2delCAT--W3010.033333327532-27534
ORF7a47H47XnonsynCaTTaA24110.45833327532-27534
ORF7a47H47XnonsynCATTGA2490.37527532-27534
ORF7a47H47XnonsynCaTTaG2440.16666727532-27534
ORF7a47H47KnonsynCaTAaA21140.66666727532-27534
ORF7a47H47TnonsynCATACA21110.5238127532-27534
ORF7a47H47KnonsynCaTAaG2170.33333327532-27534
ORF7a47H47TnonsynCAtACt2160.28571427532-27534
ORF7a47H47TnonsynCATACG2130.14285727532-27534
ORF7a47H47TnonsynCATACC2110.04761927532-27534
ORF7a47H47CnonsynCAtTGt20170.8527532-27534
ORF7a47H47CnonsynCATTGC2030.1527532-27534
ORF7a47H47InonsynCATATA1780.47058827532-27534
ORF7a47H47InonsynCAtATt1770.41176527532-27534
ORF7a47H47InonsynCATATC1720.11764727532-27534
ORF7a47H47EnonsynCaTGaG14130.92857127532-27534
ORF7a47H47EnonsynCaTGaA1410.071428627532-27534
ORF7a47H47VnonsynCATGTG1260.527532-27534
ORF7a47H47VnonsynCAtGTt1240.33333327532-27534
ORF7a47H47VnonsynCATGTC1210.083333327532-27534
ORF7a47H47VnonsynCATGTA1210.083333327532-27534
ORF7a47H47GnonsynCATGGG630.527532-27534
ORF7a47H47GnonsynCAtGGt620.33333327532-27534
ORF7a47H47GnonsynCATGGC610.16666727532-27534
ORF7a47H47MnonsynCATATG22127532-27534
ORF7a47H47WnonsynCATTGG22127532-27534
ORF7a47H47AnonsynCATGCA11127532-27534

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a47H47YCatTat52145223All0.000997
ORF7a47H47YCaTTaC95223All0.000002
ORF7a47H47delCAT---32383238All0.000619
ORF7a47H47NCatAat15931603All0.000305
ORF7a47H47NCaTAaC101603All0.000002
ORF7a47H47HcaTcaC15531553All0.000297
ORF7a47H47YCatTat15441546B.1.1.70.001382
ORF7a47H47YCaTTaC21546B.1.1.70.000002
ORF7a47H47NCatAat672672B.1.1.70.000602
ORF7a47H47delCAT---553553B.1.1.70.000495
ORF7a47H47delCAT---418418AY.250.002514
ORF7a47H47RcAtcGt358375All0.000068
ORF7a47H47RCATAGA10375All0.000002
ORF7a47H47RcATcGC4375All0.000001
ORF7a47H47RCATAGG1375All0
ORF7a47H47RcATcGA1375All0
ORF7a47H47RcATcGG1375All0
ORF7a47H47YCatTat360360AY.40.00056
ORF7a47H47NCatAat317317AY.40.000493
ORF7a47H47HcaTcaC296296B.1.5510.381935
ORF7a47H47delCAT---288288AY.40.000448
ORF7a47H47delCAT---272272B.1.617.20.001024
ORF7a47H47YCatTat243243B.1.20.00214
ORF7a47H47HcaTcaC216216B.1.1.1860.742268
ORF7a47H47HcaTcaC203203AY.40.000316
ORF7a47H47YCatTat181181B.1.1770.002383
ORF7a47H47delCAT---180180B.1.177.210.013765
ORF7a47H47LcAtcTt152177All0.000029
ORF7a47H47LCATTTA9177All0.000002
ORF7a47H47LCATTTG5177All0.000001
ORF7a47H47LcATcTC5177All0.000001
ORF7a47H47LcATcTA4177All0.000001
ORF7a47H47LcATcTG2177All0
ORF7a47H47YCatTat175175AY.1030.001087
ORF7a47H47YCatTat169169AY.260.004784
ORF7a47H47YCatTat166168B.1.617.20.000625
ORF7a47H47YCaTTaC2168B.1.617.20.000008
ORF7a47H47YCatTat167167AY.430.00074
ORF7a47H47QcaTcaA91155All0.000017
ORF7a47H47QcaTcaG64155All0.000012
ORF7a47H47YCatTat148148B.1.4290.003482
ORF7a47H47HcaTcaC147147AY.250.000884
ORF7a47H47YCatTat137141AY.250.000824
ORF7a47H47YCaTTaC4141AY.250.000024
ORF7a47H47delCAT---122122AY.1030.000758
ORF7a47H47del1caTca-57118All0.000011
ORF7a47H47del1Cat-at54118All0.00001
ORF7a47H47del1cAtc-t4118All0.000001
ORF7a47H47del1CAT-NN2118All0
ORF7a47H47del1cATc-N1118All0
ORF7a47H47YCatTat114114R.10.010261
ORF7a47H47NCatAat106106P.10.00167
ORF7a47H47delCAT---104104AY.30.001034
ORF7a47H47HcaTcaC103103B.1.1.70.000092
ORF7a47H47delCAT---9696AY.430.000425
ORF7a47H47YCatTat9595AY.440.000578
ORF7a47H47YCatTat9494AY.30.000935
ORF7a47H47delCAT---7575AY.260.002123
ORF7a47H47YCatTat7474C.370.008589
ORF7a47H47delCAT---7272AY.440.000438
ORF7a47H47YCatTat7171B.1.10.001288
ORF7a47H47RcAtcGt7070AY.40.000109
ORF7a47H47YCatTat7070AY.470.002177
ORF7a47H47HcaTcaC6767AY.440.000408
ORF7a47H47RcAtcGt6666B.1.1.70.000059
ORF7a47H47YCatTat6565B.1.1.1700.081047
ORF7a47H47DCatGat6064All0.000011
ORF7a47H47DCaTGaC464All0.000001
ORF7a47H47delCAT---6363AY.1000.002898
ORF7a47H47HcaTcaC6363B.1.617.20.000237
ORF7a47H47YCatTat6161B.10.000559
ORF7a47H47delCAT---5858AY.290.000915
ORF7a47H47YCatTat5757B.1.1600.001778
ORF7a47H47PcAtcCt5056All0.00001
ORF7a47H47PcATcCA356All0.000001
ORF7a47H47PcATcCC256All0
ORF7a47H47PcATcCG156All0
ORF7a47H47YCatTat5454P.10.000851
ORF7a47H47HcaTcaC5353AY.430.000235
ORF7a47H47delCAT---5252AY.470.001617
ORF7a47H47delCAT---5151B.1.20.000449
ORF7a47H47YCatTat5050B.1.1.2660.609756
ORF7a47H47NCatAat4949AD.20.010729
ORF7a47H47delCAT---4848AY.3.10.004092
ORF7a47H47delCAT---4646B.10.000421
ORF7a47H47delCAT---4545AY.390.001112
ORF7a47H47YCatTat4242B.1.160.180.306569
ORF7a47H47NCatAat4242B.1.5250.004753
ORF7a47H47LcAtcTt3838AY.40.000059
ORF7a47H47delCAT---3737B.1.1.2840.003974
ORF7a47H47delCAT---3737B.1.6210.003275
ORF7a47H47RcAtcGt2336AY.250.000138
ORF7a47H47RCATAGA736AY.250.000042
ORF7a47H47RcATcGC336AY.250.000018
ORF7a47H47RCATAGG136AY.250.000006
ORF7a47H47RcATcGG136AY.250.000006
ORF7a47H47RcATcGA136AY.250.000006
ORF7a47H47YCatTat3535AY.390.000865
ORF7a47H47YCatTat3434AY.50.000702
ORF7a47H47NCatAat3434B.1.20.000299
ORF7a47H47YCatTat3434B.1.3490.024303
ORF7a47H47NCatAat2734B.1.617.20.000102
ORF7a47H47NCaTAaC734B.1.617.20.000026
ORF7a47H47FCAtTTt2432All0.000005
ORF7a47H47FCATTTC832All0.000002
ORF7a47H47YCatTat3232B.1.1.2140.001775
ORF7a47H47NCatAat3232B.1.2340.004222
ORF7a47H47del2cATc--1830All0.000003
ORF7a47H47SCATTCA1130All0.000002
ORF7a47H47del2CAt--t1130All0.000002
ORF7a47H47SCAtTCt630All0.000001
ORF7a47H47SCAtAGt530All0.000001
ORF7a47H47SCATAGC330All0.000001
ORF7a47H47SCATTCG330All0.000001
ORF7a47H47SCATTCC230All0
ORF7a47H47del2CAT--W130All0
ORF7a47H47YCatTat2828AY.420.001126
ORF7a47H47YCatTat2828B.1.36.180.011765
ORF7a47H47LcAtcTt2727B.1.6370.001973
ORF7a47H47LCATTTA826AY.250.000048
ORF7a47H47LcAtcTt826AY.250.000048
ORF7a47H47LcATcTA426AY.250.000024
ORF7a47H47LCATTTG426AY.250.000024
ORF7a47H47LcATcTC226AY.250.000012
ORF7a47H47PcAtcCt2526AY.360.003705
ORF7a47H47PcATcCC126AY.360.000148
ORF7a47H47YCatTat2525B.1.4070.892857
ORF7a47H47XCaTTaA1124All0.000002
ORF7a47H47XCATTGA924All0.000002
ORF7a47H47XCaTTaG424All0.000001
ORF7a47H47del1Cat-at2424AY.4.20.000521
ORF7a47H47delCAT---2424B.1.1.2140.001331
ORF7a47H47YCatTat2424B.1.2340.003167
ORF7a47H47YCatTat2323AY.1020.00061
ORF7a47H47SCATTCA823AY.250.000048
ORF7a47H47SCAtTCt423AY.250.000024
ORF7a47H47SCATAGC323AY.250.000018
ORF7a47H47SCATTCG323AY.250.000018
ORF7a47H47SCAtAGt323AY.250.000018
ORF7a47H47SCATTCC223AY.250.000012
ORF7a47H47HcaTcaC2222AY.260.000623
ORF7a47H47YCatTat2222B.1.2320.011822
ORF7a47H47RcAtcGt2222B.1.5260.000517
ORF7a47H47delCAT---2222P.10.000347
ORF7a47H47KCaTAaA1421All0.000003
ORF7a47H47TCATACA1121All0.000002
ORF7a47H47KCaTAaG721All0.000001
ORF7a47H47TCAtACt621All0.000001
ORF7a47H47TCATACG321All0.000001
ORF7a47H47TCATACC121All0
ORF7a47H47del1caTca-2121AY.260.000595
ORF7a47H47HcaTcaC2121B.10.000192
ORF7a47H47HcaTcaC2121B.1.20.000185
ORF7a47H47YCatTat2121B.1.36.240.12963
ORF7a47H47CCAtTGt1720All0.000003
ORF7a47H47CCATTGC320All0.000001
ORF7a47H47YCatTat2020AY.1200.000744
ORF7a47H47YCatTat2020AY.240.008621
ORF7a47H47delCAT---2020AY.46.40.00329
ORF7a47H47HcaTcaC2020C.370.002321
ORF7a47H47YCatTat2020P.1.150.004647
ORF7a47H47delCAT---1919AY.420.000764
ORF7a47H47delCAT---1919AY.7.20.010626
ORF7a47H47QcaTcaA1919B.1.1770.00025
ORF7a47H47delCAT---1919B.1.1770.00025
ORF7a47H47NCatAat1919B.1.6370.001388
ORF7a47H47HcaTcaC1818AY.1030.000112
ORF7a47H47YCatTat1818AY.200.0007
ORF7a47H47delCAT---1818B.1.5260.000423
ORF7a47H47HcaTcaC1818B.1.5750.005461
ORF7a47H47ICATATA817All0.000002
ORF7a47H47ICAtATt717All0.000001
ORF7a47H47ICATATC217All0
ORF7a47H47YCatTat1717AY.1000.000782
ORF7a47H47YCatTat1717AY.4.20.000369
ORF7a47H47YCatTat1717AY.850.007262
ORF7a47H47QcaTcaA1417B.10.000128
ORF7a47H47QcaTcaG317B.10.000027
ORF7a47H47delCAT---1616AY.1190.000565
ORF7a47H47NCatAat1616AY.140.001408
ORF7a47H47XCaTTaA716AY.250.000042
ORF7a47H47XCATTGA616AY.250.000036
ORF7a47H47XCaTTaG316AY.250.000018
ORF7a47H47NCatAat1616B.10.000147
ORF7a47H47QcaTcaA1216B.1.1.70.000011
ORF7a47H47QcaTcaG416B.1.1.70.000004
ORF7a47H47delCAT---1616C.370.001857
ORF7a47H47YCatTat1616P.1.140.000765
ORF7a47H47TCATACA815AY.250.000048
ORF7a47H47TCATACG315AY.250.000018
ORF7a47H47TCAtACt315AY.250.000018
ORF7a47H47TCATACC115AY.250.000006
ORF7a47H47NCatAat1515AY.260.000425
ORF7a47H47delCAT---1515AY.50.00031
ORF7a47H47YCatTat1515B.1.3510.000446
ORF7a47H47delCAT---1515B.1.3510.000446
ORF7a47H47YCatTat1515B.1.4270.000757
ORF7a47H47QcaTcaA815B.1.617.20.00003
ORF7a47H47QcaTcaG715B.1.617.20.000026
ORF7a47H47ECaTGaG1314All0.000002
ORF7a47H47ECaTGaA114All0
ORF7a47H47RcAtcGt1414AY.30.000139
ORF7a47H47YCatTat1414B.1.1.5190.000556
ORF7a47H47delCAT---1414B.1.5960.00122
ORF7a47H47NCatAat1414B.1.5960.00122
ORF7a47H47RcAtcGt1014B.1.617.20.000038
ORF7a47H47RCATAGA314B.1.617.20.000011
ORF7a47H47RcATcGC114B.1.617.20.000004
ORF7a47H47delCAT---1414B.1.6370.001023
ORF7a47H47YCatTat1313AY.1190.000459
ORF7a47H47delCAT---1313AY.200.000505
ORF7a47H47HcaTcaC1313AY.230.000907
ORF7a47H47HcaTcaC1313B.1.1.330.005471
ORF7a47H47HcaTcaC1313B.1.1.5190.000516
ORF7a47H47LcAtcTt1313B.1.1.70.000012
ORF7a47H47YCatTat1313B.1.2430.000905
ORF7a47H47NCatAat1313P.1.140.000621
ORF7a47H47VCATGTG612All0.000001
ORF7a47H47VCAtGTt412All0.000001
ORF7a47H47VCATGTA112All0
ORF7a47H47VCATGTC112All0
ORF7a47H47delCAT---1212AY.1020.000318
ORF7a47H47ICATATA812AY.250.000048
ORF7a47H47ICAtATt312AY.250.000018
ORF7a47H47ICATATC112AY.250.000006
ORF7a47H47DCatGat1212AY.40.000019
ORF7a47H47QcaTcaG1112AY.40.000017
ORF7a47H47QcaTcaA112AY.40.000002
ORF7a47H47RcAtcGt1212AY.590.006356
ORF7a47H47RcAtcGt1212AY.99.20.001106
ORF7a47H47YCatTat1212B.1.177.350.008293
ORF7a47H47NCatAat1212B.1.2210.000852
ORF7a47H47delCAT---1212B.1.3240.019262
ORF7a47H47HcaTcaC1212B.1.4990.012605
ORF7a47H47YCatTat1212B.1.5960.001046
ORF7a47H47delCAT---1111AY.1200.000409
ORF7a47H47KCaTAaA811AY.250.000048
ORF7a47H47NCatAat811AY.250.000048
ORF7a47H47del1Cat-at711AY.250.000042
ORF7a47H47del1caTca-411AY.250.000024
ORF7a47H47KCaTAaG311AY.250.000018
ORF7a47H47NCaTAaC311AY.250.000018
ORF7a47H47delCAT---1111AY.350.002564
ORF7a47H47RcAtcGt1111AY.440.000067
ORF7a47H47HcaTcaC1111AY.460.001145
ORF7a47H47DCatGat1111B.1.1.70.00001
ORF7a47H47NCatAat1111B.1.1770.000145
ORF7a47H47FCATTTC711B.1.177.210.000535
ORF7a47H47FCAtTTt411B.1.177.210.000306
ORF7a47H47YCatTat1111B.1.2580.000732
ORF7a47H47YCatTat1111B.1.3110.00302
ORF7a47H47delCAT---1111B.1.4290.000259
ORF7a47H47RcAtcGt1111D.20.000825
ORF7a47H47HcaTcaC1111P.10.000173
ORF7a47H47DCatGat1010AY.120.003161
ORF7a47H47del2CAt--t610AY.30.00006
ORF7a47H47del2cATc--410AY.30.00004
ORF7a47H47NCatAat1010AY.390.000247
ORF7a47H47HcaTcaC1010AY.39.10.000396
ORF7a47H47YCatTat1010AY.510.009091
ORF7a47H47YCatTat1010AY.60.000411
ORF7a47H47del1caTca-610B.1.1.70.000005
ORF7a47H47del1Cat-at310B.1.1.70.000003
ORF7a47H47del1cAtc-t110B.1.1.70.000001
ORF7a47H47RcAtcGt1010B.1.177.40.002111
ORF7a47H47YCatTat1010B.1.36.290.005173
ORF7a47H47YCatTat1010B.1.5260.000235
ORF7a47H47LcAtcTt510B.1.617.20.000019
ORF7a47H47LcATcTC210B.1.617.20.000008
ORF7a47H47LcATcTG210B.1.617.20.000008
ORF7a47H47LCATTTA110B.1.617.20.000004
ORF7a47H47delCAT---1010R.10.0009
ORF7a47H47PcAtcCt49AY.250.000024
ORF7a47H47PcATcCA39AY.250.000018
ORF7a47H47PcATcCC19AY.250.000006
ORF7a47H47PcATcCG19AY.250.000006
ORF7a47H47YCatTat99AY.290.000142
ORF7a47H47delCAT---99AY.340.000873
ORF7a47H47NCatAat99AY.440.000055
ORF7a47H47delCAT---99AY.540.000858
ORF7a47H47PcAtcCt99B.1.1.70.000008
ORF7a47H47CCAtTGt89B.1.617.20.00003
ORF7a47H47CCATTGC19B.1.617.20.000004
ORF7a47H47NCatAat99B.1.6210.000797
ORF7a47H47delCAT---99L.10.017143
ORF7a47H47HcaTcaC88AY.1020.000212
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ORF7a47H47YCatTat11P.1.170.000162
ORF7a47H47NCatAat11P.1.170.000162
ORF7a47H47delCAT---11P.1.30.034483
ORF7a47H47delCAT---11P.1.40.000977
ORF7a47H47HcaTcaC11P.20.000187
ORF7a47H47YCatTat11P.40.003802
ORF7a47H47YCatTat11P.70.004367
ORF7a47H47NCatAat11Q.30.000145
ORF7a47H47LcATcTC11Q.40.000455
ORF7a47H47delCAT---11Q.70.001111
ORF7a47H47NCatAat11Q.80.000165
ORF7a47H47NCatAat11R.10.00009
ORF7a47H47YCatTat11Z.10.00289