CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 45 | P45L | nonsyn | CCa | TTa | 85277 | 14535 | 0.170445 | 27526-27528 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 45 | P45L | CCa | TTa | 14535 | 85277 | All | 0.00278 |
ORF7a | 45 | P45L | CCa | TTa | 8361 | 45921 | B.1.617.2 | 0.031483 |
ORF7a | 45 | P45L | CCa | TTa | 4328 | 22482 | AY.43 | 0.019175 |
ORF7a | 45 | P45L | CCa | TTa | 377 | 2287 | AY.44 | 0.002295 |
ORF7a | 45 | P45L | CCa | TTa | 5 | 2088 | B.1.1.7 | 0.000004 |
ORF7a | 45 | P45L | CCa | TTa | 29 | 1779 | AY.4 | 0.000045 |
ORF7a | 45 | P45L | CCa | TTa | 14 | 1275 | AY.12 | 0.004425 |
ORF7a | 45 | P45L | CCa | TTa | 516 | 1041 | AY.102 | 0.013681 |
ORF7a | 45 | P45L | CCa | TTa | 100 | 695 | AY.46 | 0.010408 |
ORF7a | 45 | P45L | CCa | TTa | 22 | 495 | AY.119 | 0.000777 |
ORF7a | 45 | P45L | CCa | TTa | 17 | 487 | AY.111 | 0.003114 |
ORF7a | 45 | P45L | CCa | TTa | 66 | 444 | AY.39 | 0.001631 |
ORF7a | 45 | P45L | CCa | TTa | 20 | 401 | AY.103 | 0.000124 |
ORF7a | 45 | P45L | CCa | TTa | 17 | 250 | AY.25 | 0.000102 |
ORF7a | 45 | P45L | CCa | TTa | 24 | 237 | AY.116 | 0.006883 |
ORF7a | 45 | P45L | CCa | TTa | 26 | 222 | AY.34.1 | 0.013259 |
ORF7a | 45 | P45L | CCa | TTa | 21 | 186 | AY.117 | 0.001775 |
ORF7a | 45 | P45L | CCa | TTa | 17 | 159 | AY.5.4 | 0.004704 |
ORF7a | 45 | P45L | CCa | TTa | 70 | 142 | AY.5.3 | 0.023617 |
ORF7a | 45 | P45L | CCa | TTa | 15 | 133 | AY.45 | 0.001825 |
ORF7a | 45 | P45L | CCa | TTa | 24 | 132 | AY.84 | 0.010499 |
ORF7a | 45 | P45L | CCa | TTa | 92 | 108 | AY.59 | 0.048729 |
ORF7a | 45 | P45L | CCa | TTa | 13 | 103 | AY.5 | 0.000268 |
ORF7a | 45 | P45L | CCa | TTa | 29 | 98 | AY.63 | 0.011219 |
ORF7a | 45 | P45L | CCa | TTa | 1 | 90 | AY.46.2 | 0.000635 |
ORF7a | 45 | P45L | CCa | TTa | 2 | 87 | B.1 | 0.000018 |
ORF7a | 45 | P45L | CCa | TTa | 17 | 83 | AY.23 | 0.001186 |
ORF7a | 45 | P45L | CCa | TTa | 1 | 74 | AY.3 | 0.00001 |
ORF7a | 45 | P45L | CCa | TTa | 23 | 72 | AY.32 | 0.012247 |
ORF7a | 45 | P45L | CCa | TTa | 1 | 70 | AY.33 | 0.000067 |
ORF7a | 45 | P45L | CCa | TTa | 8 | 62 | AY.46.6 | 0.000578 |
ORF7a | 45 | P45L | CCa | TTa | 36 | 61 | AY.118 | 0.002255 |
ORF7a | 45 | P45L | CCa | TTa | 4 | 61 | AY.58 | 0.00363 |
ORF7a | 45 | P45L | CCa | TTa | 49 | 59 | AY.10 | 0.025967 |
ORF7a | 45 | P45L | CCa | TTa | 2 | 57 | AY.98 | 0.000158 |
ORF7a | 45 | P45L | CCa | TTa | 7 | 55 | AY.105 | 0.004502 |
ORF7a | 45 | P45L | CCa | TTa | 10 | 53 | AY.89 | 0.04902 |
ORF7a | 45 | P45L | CCa | TTa | 17 | 52 | AY.42 | 0.000684 |
ORF7a | 45 | P45L | CCa | TTa | 2 | 51 | AY.88 | 0.001768 |
ORF7a | 45 | P45L | CCa | TTa | 8 | 47 | AY.92 | 0.002298 |
ORF7a | 45 | P45L | CCa | TTa | 6 | 46 | AY.99 | 0.006296 |
ORF7a | 45 | P45L | CCa | TTa | 13 | 45 | AY.47 | 0.000404 |
ORF7a | 45 | P45L | CCa | TTa | 2 | 43 | AY.20 | 0.000078 |
ORF7a | 45 | P45L | CCa | TTa | 7 | 42 | AY.106 | 0.002344 |
ORF7a | 45 | P45L | CCa | TTa | 7 | 42 | AY.95 | 0.005327 |
ORF7a | 45 | P45L | CCa | TTa | 4 | 33 | AY.19 | 0.004561 |
ORF7a | 45 | P45L | CCa | TTa | 6 | 31 | AY.113 | 0.000854 |
ORF7a | 45 | P45L | CCa | TTa | 1 | 31 | AY.120 | 0.000037 |
ORF7a | 45 | P45L | CCa | TTa | 1 | 29 | B.1.351 | 0.00003 |
ORF7a | 45 | P45L | CCa | TTa | 5 | 28 | AY.100 | 0.00023 |
ORF7a | 45 | P45L | CCa | TTa | 1 | 28 | AY.46.1 | 0.001027 |
ORF7a | 45 | P45L | CCa | TTa | 2 | 24 | AY.91 | 0.001461 |
ORF7a | 45 | P45L | CCa | TTa | 12 | 22 | AY.14 | 0.001056 |
ORF7a | 45 | P45L | CCa | TTa | 4 | 21 | AY.121 | 0.000541 |
ORF7a | 45 | P45L | CCa | TTa | 1 | 21 | AY.67 | 0.000464 |
ORF7a | 45 | P45L | CCa | TTa | 1 | 21 | AY.98.1 | 0.000048 |
ORF7a | 45 | P45L | CCa | TTa | 4 | 20 | AY.4.3 | 0.003367 |
ORF7a | 45 | P45L | CCa | TTa | 3 | 19 | AY.110 | 0.000338 |
ORF7a | 45 | P45L | CCa | TTa | 4 | 19 | AY.77 | 0.00451 |
ORF7a | 45 | P45L | CCa | TTa | 1 | 18 | AY.99.2 | 0.000092 |
ORF7a | 45 | P45L | CCa | TTa | 3 | 17 | AY.114 | 0.000693 |
ORF7a | 45 | P45L | CCa | TTa | 2 | 17 | AY.74 | 0.000231 |
ORF7a | 45 | P45L | CCa | TTa | 1 | 14 | AY.4.5 | 0.000107 |
ORF7a | 45 | P45L | CCa | TTa | 3 | 13 | AY.48 | 0.001395 |
ORF7a | 45 | P45L | CCa | TTa | 1 | 13 | AY.64 | 0.000595 |
ORF7a | 45 | P45L | CCa | TTa | 1 | 13 | AY.9.2 | 0.000037 |
ORF7a | 45 | P45L | CCa | TTa | 5 | 12 | AY.35 | 0.001165 |
ORF7a | 45 | P45L | CCa | TTa | 7 | 12 | AY.52 | 0.0057 |
ORF7a | 45 | P45L | CCa | TTa | 1 | 11 | AY.82 | 0.001357 |
ORF7a | 45 | P45L | CCa | TTa | 3 | 10 | AY.39.1 | 0.000119 |
ORF7a | 45 | P45L | CCa | TTa | 6 | 10 | AY.75 | 0.000336 |
ORF7a | 45 | P45L | CCa | TTa | 2 | 9 | AY.11 | 0.002677 |
ORF7a | 45 | P45L | CCa | TTa | 1 | 9 | AY.87 | 0.000833 |
ORF7a | 45 | P45L | CCa | TTa | 1 | 9 | AY.9.1 | 0.000084 |
ORF7a | 45 | P45L | CCa | TTa | 1 | 8 | AY.68 | 0.000274 |
ORF7a | 45 | P45L | CCa | TTa | 1 | 8 | AY.69 | 0.000187 |
ORF7a | 45 | P45L | CCa | TTa | 1 | 7 | AY.7.1 | 0.000113 |
ORF7a | 45 | P45L | CCa | TTa | 4 | 6 | AY.37 | 0.001264 |
ORF7a | 45 | P45L | CCa | TTa | 1 | 6 | AY.61 | 0.000105 |
ORF7a | 45 | P45L | CCa | TTa | 1 | 6 | AY.85 | 0.000427 |
ORF7a | 45 | P45L | CCa | TTa | 1 | 5 | AY.60 | 0.000938 |
ORF7a | 45 | P45L | CCa | TTa | 1 | 5 | AY.93 | 0.000273 |
ORF7a | 45 | P45L | CCa | TTa | 4 | 5 | B.1.177.21 | 0.000306 |
ORF7a | 45 | P45L | CCa | TTa | 2 | 4 | AY.38 | 0.000999 |
ORF7a | 45 | P45L | CCa | TTa | 1 | 4 | AY.57 | 0.000656 |
ORF7a | 45 | P45L | CCa | TTa | 1 | 4 | AY.96 | 0.002075 |
ORF7a | 45 | P45L | CCa | TTa | 1 | 3 | AY.86 | 0.00083 |
ORF7a | 45 | P45L | CCa | TTa | 1 | 2 | AY.90 | 0.000684 |
ORF7a | 45 | P45L | CCa | TTa | 1 | 1 | B.1.576 | 0.000907 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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