CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 41 | E41E | syn | gaG | gaA | 15894 | 15894 | 1 | 27514-27516 | |
ORF7a | 41 | E41D | nonsyn | gaG | gaT | 4546 | 4520 | 0.994281 | 27514-27516 | |
ORF7a | 41 | E41D | nonsyn | gaG | gaC | 4546 | 26 | 0.00571931 | 27514-27516 | |
ORF7a | 41 | E41del | del | GAG | --- | 2125 | 2125 | 1 | 27514-27516 | |
ORF7a | 41 | E41X | nonsyn | Gag | Tag | 1685 | 1673 | 0.992878 | 27514-27516 | |
ORF7a | 41 | E41X | nonsyn | GaG | TaA | 1685 | 12 | 0.00712166 | 27514-27516 | |
ORF7a | 41 | E41K | nonsyn | Gag | Aag | 267 | 237 | 0.88764 | 27514-27516 | |
ORF7a | 41 | E41K | nonsyn | GaG | AaA | 267 | 30 | 0.11236 | 27514-27516 | |
ORF7a | 41 | E41G | nonsyn | gAg | gGg | 148 | 148 | 1 | 27514-27516 | |
ORF7a | 41 | E41A | nonsyn | gAg | gCg | 105 | 94 | 0.895238 | 27514-27516 | |
ORF7a | 41 | E41A | nonsyn | gAG | gCA | 105 | 5 | 0.047619 | 27514-27516 | |
ORF7a | 41 | E41A | nonsyn | gAG | gCT | 105 | 5 | 0.047619 | 27514-27516 | |
ORF7a | 41 | E41A | nonsyn | gAG | gCC | 105 | 1 | 0.00952381 | 27514-27516 | |
ORF7a | 41 | E41V | nonsyn | gAg | gTg | 92 | 78 | 0.847826 | 27514-27516 | |
ORF7a | 41 | E41V | nonsyn | gAG | gTT | 92 | 7 | 0.076087 | 27514-27516 | |
ORF7a | 41 | E41V | nonsyn | gAG | gTA | 92 | 5 | 0.0543478 | 27514-27516 | |
ORF7a | 41 | E41V | nonsyn | gAG | gTC | 92 | 2 | 0.0217391 | 27514-27516 | |
ORF7a | 41 | E41Q | nonsyn | Gag | Cag | 90 | 88 | 0.977778 | 27514-27516 | |
ORF7a | 41 | E41Q | nonsyn | GaG | CaA | 90 | 2 | 0.0222222 | 27514-27516 | |
ORF7a | 41 | E41L | nonsyn | GAg | TTg | 61 | 31 | 0.508197 | 27514-27516 | |
ORF7a | 41 | E41L | nonsyn | GAG | CTT | 61 | 13 | 0.213115 | 27514-27516 | |
ORF7a | 41 | E41L | nonsyn | GAg | CTg | 61 | 6 | 0.0983607 | 27514-27516 | |
ORF7a | 41 | E41L | nonsyn | GAG | TTA | 61 | 6 | 0.0983607 | 27514-27516 | |
ORF7a | 41 | E41L | nonsyn | GAG | CTA | 61 | 4 | 0.0655738 | 27514-27516 | |
ORF7a | 41 | E41L | nonsyn | GAG | CTC | 61 | 1 | 0.0163934 | 27514-27516 | |
ORF7a | 41 | E41del2 | del | gAG | g-- | 32 | 25 | 0.78125 | 27514-27516 | |
ORF7a | 41 | E41del2 | del | GAG | --A | 32 | 2 | 0.0625 | 27514-27516 | |
ORF7a | 41 | E41del2 | del | GAg | --g | 32 | 2 | 0.0625 | 27514-27516 | |
ORF7a | 41 | E41del2 | del | GAG | A-- | 32 | 2 | 0.0625 | 27514-27516 | |
ORF7a | 41 | E41del2 | del | GAG | --N | 32 | 1 | 0.03125 | 27514-27516 | |
ORF7a | 41 | E41Y | nonsyn | GaG | TaT | 24 | 19 | 0.791667 | 27514-27516 | |
ORF7a | 41 | E41Y | nonsyn | GaG | TaC | 24 | 5 | 0.208333 | 27514-27516 | |
ORF7a | 41 | E41S | nonsyn | GAG | TCT | 23 | 13 | 0.565217 | 27514-27516 | |
ORF7a | 41 | E41S | nonsyn | GAG | TCA | 23 | 6 | 0.26087 | 27514-27516 | |
ORF7a | 41 | E41S | nonsyn | GAg | TCg | 23 | 2 | 0.0869565 | 27514-27516 | |
ORF7a | 41 | E41S | nonsyn | GAG | TCC | 23 | 2 | 0.0869565 | 27514-27516 | |
ORF7a | 41 | E41I | nonsyn | GAG | ATT | 20 | 9 | 0.45 | 27514-27516 | |
ORF7a | 41 | E41I | nonsyn | GAG | ATA | 20 | 9 | 0.45 | 27514-27516 | |
ORF7a | 41 | E41I | nonsyn | GAG | ATC | 20 | 2 | 0.1 | 27514-27516 | |
ORF7a | 41 | E41T | nonsyn | GAG | ACT | 19 | 8 | 0.421053 | 27514-27516 | |
ORF7a | 41 | E41T | nonsyn | GAG | ACA | 19 | 7 | 0.368421 | 27514-27516 | |
ORF7a | 41 | E41T | nonsyn | GAg | ACg | 19 | 3 | 0.157895 | 27514-27516 | |
ORF7a | 41 | E41T | nonsyn | GAG | ACC | 19 | 1 | 0.0526316 | 27514-27516 | |
ORF7a | 41 | E41del1 | del | Gag | -ag | 18 | 11 | 0.611111 | 27514-27516 | |
ORF7a | 41 | E41del1 | del | gaG | ga- | 18 | 6 | 0.333333 | 27514-27516 | |
ORF7a | 41 | E41del1 | del | GAG | -GA | 18 | 1 | 0.0555556 | 27514-27516 | |
ORF7a | 41 | E41N | nonsyn | GaG | AaT | 17 | 12 | 0.705882 | 27514-27516 | |
ORF7a | 41 | E41N | nonsyn | GaG | AaC | 17 | 5 | 0.294118 | 27514-27516 | |
ORF7a | 41 | E41F | nonsyn | GAG | TTT | 14 | 12 | 0.857143 | 27514-27516 | |
ORF7a | 41 | E41F | nonsyn | GAG | TTC | 14 | 2 | 0.142857 | 27514-27516 | |
ORF7a | 41 | E41P | nonsyn | GAG | CCT | 9 | 4 | 0.444444 | 27514-27516 | |
ORF7a | 41 | E41P | nonsyn | GAG | CCA | 9 | 3 | 0.333333 | 27514-27516 | |
ORF7a | 41 | E41P | nonsyn | GAg | CCg | 9 | 2 | 0.222222 | 27514-27516 | |
ORF7a | 41 | E41H | nonsyn | GaG | CaT | 8 | 6 | 0.75 | 27514-27516 | |
ORF7a | 41 | E41H | nonsyn | GaG | CaC | 8 | 2 | 0.25 | 27514-27516 | |
ORF7a | 41 | E41R | nonsyn | GAg | AGg | 5 | 4 | 0.8 | 27514-27516 | |
ORF7a | 41 | E41R | nonsyn | GAG | AGA | 5 | 1 | 0.2 | 27514-27516 | |
ORF7a | 41 | E41M | nonsyn | GAg | ATg | 4 | 4 | 1 | 27514-27516 | |
ORF7a | 41 | E41W | nonsyn | GAg | TGg | 2 | 2 | 1 | 27514-27516 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 41 | E41E | gaG | gaA | 15894 | 15894 | All | 0.00304 |
ORF7a | 41 | E41E | gaG | gaA | 14527 | 14527 | AY.75 | 0.813838 |
ORF7a | 41 | E41D | gaG | gaT | 4520 | 4546 | All | 0.000865 |
ORF7a | 41 | E41D | gaG | gaC | 26 | 4546 | All | 0.000005 |
ORF7a | 41 | E41del | GAG | --- | 2125 | 2125 | All | 0.000406 |
ORF7a | 41 | E41X | Gag | Tag | 1673 | 1685 | All | 0.00032 |
ORF7a | 41 | E41X | GaG | TaA | 12 | 1685 | All | 0.000002 |
ORF7a | 41 | E41D | gaG | gaT | 1093 | 1094 | B.1.617.2 | 0.004116 |
ORF7a | 41 | E41D | gaG | gaC | 1 | 1094 | B.1.617.2 | 0.000004 |
ORF7a | 41 | E41D | gaG | gaT | 836 | 836 | AY.1 | 0.330827 |
ORF7a | 41 | E41E | gaG | gaA | 819 | 819 | B.1.617.2 | 0.003084 |
ORF7a | 41 | E41D | gaG | gaT | 657 | 657 | AY.43 | 0.002911 |
ORF7a | 41 | E41X | Gag | Tag | 437 | 437 | AY.113 | 0.062224 |
ORF7a | 41 | E41D | gaG | gaT | 390 | 390 | AY.47 | 0.012131 |
ORF7a | 41 | E41del | GAG | --- | 355 | 355 | B.1.1.7 | 0.000318 |
ORF7a | 41 | E41X | Gag | Tag | 325 | 332 | B.1.1.7 | 0.000291 |
ORF7a | 41 | E41X | GaG | TaA | 7 | 332 | B.1.1.7 | 0.000006 |
ORF7a | 41 | E41K | Gag | Aag | 237 | 267 | All | 0.000045 |
ORF7a | 41 | E41K | GaG | AaA | 30 | 267 | All | 0.000006 |
ORF7a | 41 | E41del | GAG | --- | 261 | 261 | AY.4 | 0.000406 |
ORF7a | 41 | E41del | GAG | --- | 250 | 250 | B.1.617.2 | 0.000941 |
ORF7a | 41 | E41D | gaG | gaT | 239 | 248 | B.1.1.7 | 0.000214 |
ORF7a | 41 | E41D | gaG | gaC | 9 | 248 | B.1.1.7 | 0.000008 |
ORF7a | 41 | E41X | Gag | Tag | 220 | 221 | AY.25 | 0.001323 |
ORF7a | 41 | E41X | GaG | TaA | 1 | 221 | AY.25 | 0.000006 |
ORF7a | 41 | E41D | gaG | gaT | 199 | 199 | AY.98.1 | 0.009638 |
ORF7a | 41 | E41D | gaG | gaT | 190 | 190 | AY.4 | 0.000296 |
ORF7a | 41 | E41del | GAG | --- | 179 | 179 | B.1.177.21 | 0.013688 |
ORF7a | 41 | E41del | GAG | --- | 168 | 168 | AY.25 | 0.00101 |
ORF7a | 41 | E41G | gAg | gGg | 148 | 148 | All | 0.000028 |
ORF7a | 41 | E41A | gAg | gCg | 94 | 105 | All | 0.000018 |
ORF7a | 41 | E41A | gAG | gCT | 5 | 105 | All | 0.000001 |
ORF7a | 41 | E41A | gAG | gCA | 5 | 105 | All | 0.000001 |
ORF7a | 41 | E41A | gAG | gCC | 1 | 105 | All | 0 |
ORF7a | 41 | E41X | Gag | Tag | 102 | 102 | AY.4 | 0.000159 |
ORF7a | 41 | E41V | gAg | gTg | 78 | 92 | All | 0.000015 |
ORF7a | 41 | E41V | gAG | gTT | 7 | 92 | All | 0.000001 |
ORF7a | 41 | E41V | gAG | gTA | 5 | 92 | All | 0.000001 |
ORF7a | 41 | E41V | gAG | gTC | 2 | 92 | All | 0 |
ORF7a | 41 | E41Q | Gag | Cag | 88 | 90 | All | 0.000017 |
ORF7a | 41 | E41Q | GaG | CaA | 2 | 90 | All | 0 |
ORF7a | 41 | E41D | gaG | gaT | 87 | 88 | AY.39 | 0.00215 |
ORF7a | 41 | E41D | gaG | gaC | 1 | 88 | AY.39 | 0.000025 |
ORF7a | 41 | E41del | GAG | --- | 85 | 85 | AY.103 | 0.000528 |
ORF7a | 41 | E41E | gaG | gaA | 83 | 83 | B.1.1.192 | 0.191686 |
ORF7a | 41 | E41X | Gag | Tag | 77 | 77 | AY.21 | 0.14611 |
ORF7a | 41 | E41D | gaG | gaT | 65 | 65 | AY.117 | 0.005494 |
ORF7a | 41 | E41K | Gag | Aag | 42 | 63 | B.1.1.7 | 0.000038 |
ORF7a | 41 | E41K | GaG | AaA | 21 | 63 | B.1.1.7 | 0.000019 |
ORF7a | 41 | E41L | GAg | TTg | 31 | 61 | All | 0.000006 |
ORF7a | 41 | E41L | GAG | CTT | 13 | 61 | All | 0.000002 |
ORF7a | 41 | E41L | GAG | TTA | 6 | 61 | All | 0.000001 |
ORF7a | 41 | E41L | GAg | CTg | 6 | 61 | All | 0.000001 |
ORF7a | 41 | E41L | GAG | CTA | 4 | 61 | All | 0.000001 |
ORF7a | 41 | E41L | GAG | CTC | 1 | 61 | All | 0 |
ORF7a | 41 | E41del | GAG | --- | 59 | 59 | AY.44 | 0.000359 |
ORF7a | 41 | E41A | gAg | gCg | 59 | 59 | AY.47 | 0.001835 |
ORF7a | 41 | E41del | GAG | --- | 56 | 56 | AY.39.1 | 0.002218 |
ORF7a | 41 | E41X | Gag | Tag | 55 | 55 | B.1.617.2 | 0.000207 |
ORF7a | 41 | E41D | gaG | gaT | 53 | 54 | AY.44 | 0.000323 |
ORF7a | 41 | E41D | gaG | gaC | 1 | 54 | AY.44 | 0.000006 |
ORF7a | 41 | E41E | gaG | gaA | 50 | 50 | B.1.1.7 | 0.000045 |
ORF7a | 41 | E41del | GAG | --- | 49 | 49 | AY.29 | 0.000773 |
ORF7a | 41 | E41del | GAG | --- | 49 | 49 | AY.3.1 | 0.004178 |
ORF7a | 41 | E41E | gaG | gaA | 46 | 46 | B.1.1 | 0.000834 |
ORF7a | 41 | E41K | Gag | Aag | 46 | 46 | B.1.619 | 0.04007 |
ORF7a | 41 | E41D | gaG | gaT | 43 | 43 | AY.46 | 0.004475 |
ORF7a | 41 | E41del | GAG | --- | 42 | 42 | AY.3 | 0.000418 |
ORF7a | 41 | E41X | Gag | Tag | 38 | 38 | AY.29.1 | 0.008379 |
ORF7a | 41 | E41D | gaG | gaT | 37 | 37 | AY.103 | 0.00023 |
ORF7a | 41 | E41X | Gag | Tag | 37 | 37 | AY.43 | 0.000164 |
ORF7a | 41 | E41X | Gag | Tag | 36 | 36 | AY.103 | 0.000224 |
ORF7a | 41 | E41E | gaG | gaA | 36 | 36 | AY.118 | 0.002255 |
ORF7a | 41 | E41del | GAG | --- | 36 | 36 | AY.39 | 0.00089 |
ORF7a | 41 | E41del | GAG | --- | 36 | 36 | B.1.1.284 | 0.003866 |
ORF7a | 41 | E41D | gaG | gaT | 35 | 35 | AY.36 | 0.005187 |
ORF7a | 41 | E41D | gaG | gaT | 35 | 35 | B.1 | 0.000321 |
ORF7a | 41 | E41X | Gag | Tag | 34 | 34 | AY.44 | 0.000207 |
ORF7a | 41 | E41D | gaG | gaT | 34 | 34 | AY.69 | 0.006347 |
ORF7a | 41 | E41del | GAG | --- | 33 | 33 | B.1.621 | 0.002921 |
ORF7a | 41 | E41del2 | gAG | g-- | 25 | 32 | All | 0.000005 |
ORF7a | 41 | E41del2 | GAG | --A | 2 | 32 | All | 0 |
ORF7a | 41 | E41del2 | GAG | A-- | 2 | 32 | All | 0 |
ORF7a | 41 | E41del2 | GAg | --g | 2 | 32 | All | 0 |
ORF7a | 41 | E41del2 | GAG | --N | 1 | 32 | All | 0 |
ORF7a | 41 | E41D | gaG | gaT | 26 | 32 | AY.3 | 0.000259 |
ORF7a | 41 | E41D | gaG | gaC | 6 | 32 | AY.3 | 0.00006 |
ORF7a | 41 | E41D | gaG | gaT | 32 | 32 | AY.32 | 0.017039 |
ORF7a | 41 | E41D | gaG | gaT | 31 | 31 | AY.102 | 0.000822 |
ORF7a | 41 | E41del | GAG | --- | 30 | 30 | AY.102 | 0.000795 |
ORF7a | 41 | E41del | GAG | --- | 30 | 30 | AY.43 | 0.000133 |
ORF7a | 41 | E41del | GAG | --- | 30 | 30 | B.1 | 0.000275 |
ORF7a | 41 | E41D | gaG | gaT | 27 | 29 | AY.25 | 0.000162 |
ORF7a | 41 | E41D | gaG | gaC | 2 | 29 | AY.25 | 0.000012 |
ORF7a | 41 | E41V | gAg | gTg | 29 | 29 | B.1.1.7 | 0.000026 |
ORF7a | 41 | E41D | gaG | gaT | 29 | 29 | B.1.351.2 | 0.008775 |
ORF7a | 41 | E41Y | GaG | TaT | 19 | 24 | All | 0.000004 |
ORF7a | 41 | E41Y | GaG | TaC | 5 | 24 | All | 0.000001 |
ORF7a | 41 | E41G | gAg | gGg | 24 | 24 | B.1.1.7 | 0.000021 |
ORF7a | 41 | E41D | gaG | gaT | 24 | 24 | B.1.160 | 0.000749 |
ORF7a | 41 | E41Q | Gag | Cag | 24 | 24 | B.1.617.2 | 0.00009 |
ORF7a | 41 | E41S | GAG | TCT | 13 | 23 | All | 0.000002 |
ORF7a | 41 | E41S | GAG | TCA | 6 | 23 | All | 0.000001 |
ORF7a | 41 | E41S | GAg | TCg | 2 | 23 | All | 0 |
ORF7a | 41 | E41S | GAG | TCC | 2 | 23 | All | 0 |
ORF7a | 41 | E41E | gaG | gaA | 23 | 23 | AY.44 | 0.00014 |
ORF7a | 41 | E41del | GAG | --- | 23 | 23 | B.1.1.214 | 0.001276 |
ORF7a | 41 | E41E | gaG | gaA | 23 | 23 | P.1 | 0.000362 |
ORF7a | 41 | E41L | GAg | TTg | 22 | 22 | AY.113 | 0.003133 |
ORF7a | 41 | E41K | Gag | Aag | 22 | 22 | AY.4 | 0.000034 |
ORF7a | 41 | E41G | gAg | gGg | 21 | 21 | AY.4 | 0.000033 |
ORF7a | 41 | E41I | GAG | ATT | 9 | 20 | All | 0.000002 |
ORF7a | 41 | E41I | GAG | ATA | 9 | 20 | All | 0.000002 |
ORF7a | 41 | E41I | GAG | ATC | 2 | 20 | All | 0 |
ORF7a | 41 | E41E | gaG | gaA | 20 | 20 | AY.25 | 0.00012 |
ORF7a | 41 | E41T | GAG | ACT | 8 | 19 | All | 0.000002 |
ORF7a | 41 | E41T | GAG | ACA | 7 | 19 | All | 0.000001 |
ORF7a | 41 | E41T | GAg | ACg | 3 | 19 | All | 0.000001 |
ORF7a | 41 | E41T | GAG | ACC | 1 | 19 | All | 0 |
ORF7a | 41 | E41del | GAG | --- | 19 | 19 | AY.7.2 | 0.010626 |
ORF7a | 41 | E41G | gAg | gGg | 19 | 19 | B.1.1 | 0.000345 |
ORF7a | 41 | E41del1 | Gag | -ag | 11 | 18 | All | 0.000002 |
ORF7a | 41 | E41del1 | gaG | ga- | 6 | 18 | All | 0.000001 |
ORF7a | 41 | E41del1 | GAG | -GA | 1 | 18 | All | 0 |
ORF7a | 41 | E41X | Gag | Tag | 18 | 18 | AY.3 | 0.000179 |
ORF7a | 41 | E41D | gaG | gaT | 18 | 18 | P.1.14 | 0.00086 |
ORF7a | 41 | E41N | GaG | AaT | 12 | 17 | All | 0.000002 |
ORF7a | 41 | E41N | GaG | AaC | 5 | 17 | All | 0.000001 |
ORF7a | 41 | E41del | GAG | --- | 17 | 17 | B.1.177 | 0.000224 |
ORF7a | 41 | E41E | gaG | gaA | 16 | 16 | AY.103 | 0.000099 |
ORF7a | 41 | E41E | gaG | gaA | 16 | 16 | B.1 | 0.000147 |
ORF7a | 41 | E41G | gAg | gGg | 16 | 16 | B.1.617.2 | 0.00006 |
ORF7a | 41 | E41X | Gag | Tag | 16 | 16 | P.1 | 0.000252 |
ORF7a | 41 | E41X | Gag | Tag | 15 | 15 | AY.102 | 0.000398 |
ORF7a | 41 | E41D | gaG | gaT | 15 | 15 | AY.120 | 0.000558 |
ORF7a | 41 | E41G | gAg | gGg | 15 | 15 | AY.3 | 0.000149 |
ORF7a | 41 | E41X | Gag | Tag | 15 | 15 | AY.4.2 | 0.000325 |
ORF7a | 41 | E41del | GAG | --- | 15 | 15 | AY.46.4 | 0.002468 |
ORF7a | 41 | E41V | gAg | gTg | 15 | 15 | B.1.177.86 | 0.002752 |
ORF7a | 41 | E41D | gaG | gaT | 15 | 15 | B.1.429 | 0.000353 |
ORF7a | 41 | E41F | GAG | TTT | 12 | 14 | All | 0.000002 |
ORF7a | 41 | E41F | GAG | TTC | 2 | 14 | All | 0 |
ORF7a | 41 | E41D | gaG | gaT | 14 | 14 | AY.33 | 0.000935 |
ORF7a | 41 | E41X | Gag | Tag | 14 | 14 | AY.6 | 0.000576 |
ORF7a | 41 | E41E | gaG | gaA | 14 | 14 | AY.62 | 0.0061 |
ORF7a | 41 | E41del | GAG | --- | 13 | 13 | AY.100 | 0.000598 |
ORF7a | 41 | E41D | gaG | gaT | 13 | 13 | AY.118 | 0.000814 |
ORF7a | 41 | E41D | gaG | gaT | 13 | 13 | AY.20 | 0.000505 |
ORF7a | 41 | E41E | gaG | gaA | 13 | 13 | AY.43 | 0.000058 |
ORF7a | 41 | E41D | gaG | gaT | 13 | 13 | B.1.427 | 0.000656 |
ORF7a | 41 | E41X | Gag | Tag | 12 | 12 | AY.60 | 0.011257 |
ORF7a | 41 | E41X | Gag | Tag | 11 | 12 | B.1 | 0.000101 |
ORF7a | 41 | E41L | GAG | CTT | 4 | 12 | B.1 | 0.000037 |
ORF7a | 41 | E41L | GAg | TTg | 3 | 12 | B.1 | 0.000027 |
ORF7a | 41 | E41L | GAg | CTg | 3 | 12 | B.1 | 0.000027 |
ORF7a | 41 | E41L | GAG | TTA | 1 | 12 | B.1 | 0.000009 |
ORF7a | 41 | E41L | GAG | CTA | 1 | 12 | B.1 | 0.000009 |
ORF7a | 41 | E41X | GaG | TaA | 1 | 12 | B.1 | 0.000009 |
ORF7a | 41 | E41D | gaG | gaT | 11 | 12 | B.1.1 | 0.0002 |
ORF7a | 41 | E41D | gaG | gaC | 1 | 12 | B.1.1 | 0.000018 |
ORF7a | 41 | E41del | GAG | --- | 12 | 12 | B.1.324 | 0.019262 |
ORF7a | 41 | E41G | gAg | gGg | 11 | 11 | AY.103 | 0.000068 |
ORF7a | 41 | E41D | gaG | gaT | 11 | 11 | AY.12 | 0.003477 |
ORF7a | 41 | E41L | GAG | CTT | 3 | 11 | AY.25 | 0.000018 |
ORF7a | 41 | E41L | GAG | CTA | 3 | 11 | AY.25 | 0.000018 |
ORF7a | 41 | E41L | GAg | CTg | 2 | 11 | AY.25 | 0.000012 |
ORF7a | 41 | E41L | GAG | TTA | 2 | 11 | AY.25 | 0.000012 |
ORF7a | 41 | E41L | GAG | CTC | 1 | 11 | AY.25 | 0.000006 |
ORF7a | 41 | E41D | gaG | gaT | 11 | 11 | AY.26 | 0.000311 |
ORF7a | 41 | E41del | GAG | --- | 11 | 11 | AY.47 | 0.000342 |
ORF7a | 41 | E41E | gaG | gaA | 11 | 11 | AY.93 | 0.003004 |
ORF7a | 41 | E41K | Gag | Aag | 10 | 11 | B.1.617.2 | 0.000038 |
ORF7a | 41 | E41K | GaG | AaA | 1 | 11 | B.1.617.2 | 0.000004 |
ORF7a | 41 | E41del | GAG | --- | 11 | 11 | C.37 | 0.001277 |
ORF7a | 41 | E41K | Gag | Aag | 10 | 10 | AY.103 | 0.000062 |
ORF7a | 41 | E41X | Gag | Tag | 10 | 10 | AY.121 | 0.001353 |
ORF7a | 41 | E41V | gAG | gTT | 4 | 10 | B.1 | 0.000037 |
ORF7a | 41 | E41V | gAg | gTg | 4 | 10 | B.1 | 0.000037 |
ORF7a | 41 | E41V | gAG | gTC | 1 | 10 | B.1 | 0.000009 |
ORF7a | 41 | E41V | gAG | gTA | 1 | 10 | B.1 | 0.000009 |
ORF7a | 41 | E41E | gaG | gaA | 10 | 10 | B.1.177 | 0.000132 |
ORF7a | 41 | E41K | Gag | Aag | 10 | 10 | B.1.258.17 | 0.00104 |
ORF7a | 41 | E41del | GAG | --- | 10 | 10 | P.1 | 0.000158 |
ORF7a | 41 | E41P | GAG | CCT | 4 | 9 | All | 0.000001 |
ORF7a | 41 | E41P | GAG | CCA | 3 | 9 | All | 0.000001 |
ORF7a | 41 | E41P | GAg | CCg | 2 | 9 | All | 0 |
ORF7a | 41 | E41D | gaG | gaT | 9 | 9 | AY.13 | 0.001449 |
ORF7a | 41 | E41del | GAG | --- | 9 | 9 | AY.20 | 0.00035 |
ORF7a | 41 | E41del | GAG | --- | 9 | 9 | AY.23 | 0.000628 |
ORF7a | 41 | E41del | GAG | --- | 9 | 9 | AY.26 | 0.000255 |
ORF7a | 41 | E41Q | Gag | Cag | 9 | 9 | AY.4 | 0.000014 |
ORF7a | 41 | E41del | GAG | --- | 9 | 9 | AY.4.2 | 0.000195 |
ORF7a | 41 | E41E | gaG | gaA | 9 | 9 | B.1.1.189 | 0.013616 |
ORF7a | 41 | E41T | GAG | ACT | 4 | 9 | B.1.1.7 | 0.000004 |
ORF7a | 41 | E41S | GAG | TCA | 4 | 9 | B.1.1.7 | 0.000004 |
ORF7a | 41 | E41S | GAG | TCT | 4 | 9 | B.1.1.7 | 0.000004 |
ORF7a | 41 | E41T | GAG | ACA | 4 | 9 | B.1.1.7 | 0.000004 |
ORF7a | 41 | E41T | GAg | ACg | 1 | 9 | B.1.1.7 | 0.000001 |
ORF7a | 41 | E41S | GAg | TCg | 1 | 9 | B.1.1.7 | 0.000001 |
ORF7a | 41 | E41X | Gag | Tag | 9 | 9 | B.1.2 | 0.000079 |
ORF7a | 41 | E41D | gaG | gaT | 9 | 9 | B.1.2 | 0.000079 |
ORF7a | 41 | E41D | gaG | gaT | 9 | 9 | P.1 | 0.000142 |
ORF7a | 41 | E41X | Gag | Tag | 9 | 9 | P.1.7 | 0.002874 |
ORF7a | 41 | E41H | GaG | CaT | 6 | 8 | All | 0.000001 |
ORF7a | 41 | E41H | GaG | CaC | 2 | 8 | All | 0 |
ORF7a | 41 | E41E | gaG | gaA | 8 | 8 | AY.102 | 0.000212 |
ORF7a | 41 | E41D | gaG | gaT | 8 | 8 | AY.121 | 0.001083 |
ORF7a | 41 | E41I | GAG | ATT | 4 | 8 | AY.25 | 0.000024 |
ORF7a | 41 | E41I | GAG | ATA | 3 | 8 | AY.25 | 0.000018 |
ORF7a | 41 | E41I | GAG | ATC | 1 | 8 | AY.25 | 0.000006 |
ORF7a | 41 | E41del1 | Gag | -ag | 8 | 8 | AY.3 | 0.00008 |
ORF7a | 41 | E41X | Gag | Tag | 8 | 8 | AY.33 | 0.000534 |
ORF7a | 41 | E41X | Gag | Tag | 8 | 8 | AY.34 | 0.000776 |
ORF7a | 41 | E41E | gaG | gaA | 8 | 8 | AY.4 | 0.000012 |
ORF7a | 41 | E41G | gAg | gGg | 8 | 8 | B.1 | 0.000073 |
ORF7a | 41 | E41del | GAG | --- | 8 | 8 | B.1.2 | 0.00007 |
ORF7a | 41 | E41K | Gag | Aag | 8 | 8 | B.1.351 | 0.000238 |
ORF7a | 41 | E41E | gaG | gaA | 8 | 8 | B.1.429 | 0.000188 |
ORF7a | 41 | E41D | gaG | gaT | 7 | 8 | B.1.617.1 | 0.000903 |
ORF7a | 41 | E41D | gaG | gaC | 1 | 8 | B.1.617.1 | 0.000129 |
ORF7a | 41 | E41K | Gag | Aag | 7 | 7 | AY.113 | 0.000997 |
ORF7a | 41 | E41X | Gag | Tag | 7 | 7 | AY.117 | 0.000592 |
ORF7a | 41 | E41D | gaG | gaT | 7 | 7 | AY.119 | 0.000247 |
ORF7a | 41 | E41V | gAg | gTg | 3 | 7 | AY.25 | 0.000018 |
ORF7a | 41 | E41T | GAG | ACT | 3 | 7 | AY.25 | 0.000018 |
ORF7a | 41 | E41T | GAG | ACA | 2 | 7 | AY.25 | 0.000012 |
ORF7a | 41 | E41V | gAG | gTT | 2 | 7 | AY.25 | 0.000012 |
ORF7a | 41 | E41T | GAG | ACC | 1 | 7 | AY.25 | 0.000006 |
ORF7a | 41 | E41V | gAG | gTC | 1 | 7 | AY.25 | 0.000006 |
ORF7a | 41 | E41V | gAG | gTA | 1 | 7 | AY.25 | 0.000006 |
ORF7a | 41 | E41T | GAg | ACg | 1 | 7 | AY.25 | 0.000006 |
ORF7a | 41 | E41X | Gag | Tag | 7 | 7 | AY.26 | 0.000198 |
ORF7a | 41 | E41Q | Gag | Cag | 7 | 7 | AY.26 | 0.000198 |
ORF7a | 41 | E41E | gaG | gaA | 7 | 7 | AY.3 | 0.00007 |
ORF7a | 41 | E41D | gaG | gaT | 7 | 7 | AY.42 | 0.000282 |
ORF7a | 41 | E41D | gaG | gaT | 7 | 7 | AY.5 | 0.000145 |
ORF7a | 41 | E41Q | Gag | Cag | 6 | 7 | B.1 | 0.000055 |
ORF7a | 41 | E41Q | GaG | CaA | 1 | 7 | B.1 | 0.000009 |
ORF7a | 41 | E41Q | Gag | Cag | 7 | 7 | B.1.1.7 | 0.000006 |
ORF7a | 41 | E41E | gaG | gaA | 7 | 7 | B.1.258 | 0.000466 |
ORF7a | 41 | E41E | gaG | gaA | 7 | 7 | B.1.351 | 0.000208 |
ORF7a | 41 | E41del | GAG | --- | 7 | 7 | B.1.525 | 0.000792 |
ORF7a | 41 | E41A | gAg | gCg | 4 | 7 | B.1.617.2 | 0.000015 |
ORF7a | 41 | E41A | gAG | gCT | 2 | 7 | B.1.617.2 | 0.000008 |
ORF7a | 41 | E41A | gAG | gCC | 1 | 7 | B.1.617.2 | 0.000004 |
ORF7a | 41 | E41K | Gag | Aag | 7 | 7 | B.1.619.1 | 0.00449 |
ORF7a | 41 | E41D | gaG | gaT | 6 | 6 | AY.14 | 0.000528 |
ORF7a | 41 | E41E | gaG | gaA | 6 | 6 | AY.14 | 0.000528 |
ORF7a | 41 | E41Y | GaG | TaT | 4 | 6 | AY.25 | 0.000024 |
ORF7a | 41 | E41Y | GaG | TaC | 2 | 6 | AY.25 | 0.000012 |
ORF7a | 41 | E41del2 | gAG | g-- | 6 | 6 | AY.34 | 0.000582 |
ORF7a | 41 | E41E | gaG | gaA | 6 | 6 | AY.47 | 0.000187 |
ORF7a | 41 | E41X | Gag | Tag | 6 | 6 | AY.47 | 0.000187 |
ORF7a | 41 | E41E | gaG | gaA | 6 | 6 | AY.61 | 0.000629 |
ORF7a | 41 | E41E | gaG | gaA | 6 | 6 | AY.75.1 | 0.001082 |
ORF7a | 41 | E41X | Gag | Tag | 6 | 6 | AY.79 | 0.007264 |
ORF7a | 41 | E41del | GAG | --- | 6 | 6 | B.1.1 | 0.000109 |
ORF7a | 41 | E41X | Gag | Tag | 6 | 6 | B.1.1.519 | 0.000238 |
ORF7a | 41 | E41Y | GaG | TaT | 5 | 6 | B.1.1.7 | 0.000004 |
ORF7a | 41 | E41Y | GaG | TaC | 1 | 6 | B.1.1.7 | 0.000001 |
ORF7a | 41 | E41X | Gag | Tag | 6 | 6 | B.1.163 | 0.146341 |
ORF7a | 41 | E41K | Gag | Aag | 6 | 6 | B.1.177 | 0.000079 |
ORF7a | 41 | E41D | gaG | gaT | 6 | 6 | B.1.177 | 0.000079 |
ORF7a | 41 | E41E | gaG | gaA | 6 | 6 | B.1.2 | 0.000053 |
ORF7a | 41 | E41X | Gag | Tag | 6 | 6 | B.1.351 | 0.000178 |
ORF7a | 41 | E41del | GAG | --- | 6 | 6 | B.1.429 | 0.000141 |
ORF7a | 41 | E41del | GAG | --- | 6 | 6 | B.1.526 | 0.000141 |
ORF7a | 41 | E41L | GAG | CTT | 6 | 6 | B.1.617.2 | 0.000023 |
ORF7a | 41 | E41del | GAG | --- | 6 | 6 | B.1.637 | 0.000438 |
ORF7a | 41 | E41R | GAg | AGg | 4 | 5 | All | 0.000001 |
ORF7a | 41 | E41R | GAG | AGA | 1 | 5 | All | 0 |
ORF7a | 41 | E41E | gaG | gaA | 5 | 5 | AY.100 | 0.00023 |
ORF7a | 41 | E41D | gaG | gaT | 5 | 5 | AY.113 | 0.000712 |
ORF7a | 41 | E41D | gaG | gaT | 5 | 5 | AY.116 | 0.001434 |
ORF7a | 41 | E41K | Gag | Aag | 5 | 5 | AY.119 | 0.000177 |
ORF7a | 41 | E41E | gaG | gaA | 5 | 5 | AY.13 | 0.000805 |
ORF7a | 41 | E41del2 | gAG | g-- | 5 | 5 | AY.25 | 0.00003 |
ORF7a | 41 | E41F | GAG | TTT | 4 | 5 | AY.25 | 0.000024 |
ORF7a | 41 | E41N | GaG | AaT | 3 | 5 | AY.25 | 0.000018 |
ORF7a | 41 | E41S | GAG | TCT | 3 | 5 | AY.25 | 0.000018 |
ORF7a | 41 | E41A | gAG | gCT | 2 | 5 | AY.25 | 0.000012 |
ORF7a | 41 | E41P | GAG | CCT | 2 | 5 | AY.25 | 0.000012 |
ORF7a | 41 | E41P | GAG | CCA | 2 | 5 | AY.25 | 0.000012 |
ORF7a | 41 | E41N | GaG | AaC | 2 | 5 | AY.25 | 0.000012 |
ORF7a | 41 | E41A | gAg | gCg | 2 | 5 | AY.25 | 0.000012 |
ORF7a | 41 | E41S | GAG | TCC | 1 | 5 | AY.25 | 0.000006 |
ORF7a | 41 | E41F | GAG | TTC | 1 | 5 | AY.25 | 0.000006 |
ORF7a | 41 | E41A | gAG | gCA | 1 | 5 | AY.25 | 0.000006 |
ORF7a | 41 | E41S | GAG | TCA | 1 | 5 | AY.25 | 0.000006 |
ORF7a | 41 | E41P | GAg | CCg | 1 | 5 | AY.25 | 0.000006 |
ORF7a | 41 | E41E | gaG | gaA | 5 | 5 | AY.26 | 0.000142 |
ORF7a | 41 | E41D | gaG | gaT | 5 | 5 | AY.34 | 0.000485 |
ORF7a | 41 | E41X | Gag | Tag | 5 | 5 | AY.39 | 0.000124 |
ORF7a | 41 | E41K | Gag | Aag | 5 | 5 | AY.43 | 0.000022 |
ORF7a | 41 | E41Q | Gag | Cag | 5 | 5 | AY.44 | 0.00003 |
ORF7a | 41 | E41D | gaG | gaT | 5 | 5 | AY.5.4 | 0.001384 |
ORF7a | 41 | E41D | gaG | gaT | 5 | 5 | AY.62 | 0.002179 |
ORF7a | 41 | E41del | GAG | --- | 5 | 5 | AY.98.1 | 0.000242 |
ORF7a | 41 | E41S | GAG | TCT | 3 | 5 | B.1 | 0.000027 |
ORF7a | 41 | E41A | gAG | gCA | 2 | 5 | B.1 | 0.000018 |
ORF7a | 41 | E41A | gAg | gCg | 2 | 5 | B.1 | 0.000018 |
ORF7a | 41 | E41S | GAg | TCg | 1 | 5 | B.1 | 0.000009 |
ORF7a | 41 | E41A | gAG | gCT | 1 | 5 | B.1 | 0.000009 |
ORF7a | 41 | E41S | GAG | TCA | 1 | 5 | B.1 | 0.000009 |
ORF7a | 41 | E41K | Gag | Aag | 3 | 5 | B.1.1 | 0.000054 |
ORF7a | 41 | E41K | GaG | AaA | 2 | 5 | B.1.1 | 0.000036 |
ORF7a | 41 | E41K | Gag | Aag | 5 | 5 | B.1.1.269 | 0.006766 |
ORF7a | 41 | E41del | GAG | --- | 5 | 5 | B.1.1.56 | 0.089286 |
ORF7a | 41 | E41A | gAg | gCg | 5 | 5 | B.1.1.7 | 0.000004 |
ORF7a | 41 | E41N | GaG | AaT | 4 | 5 | B.1.1.7 | 0.000004 |
ORF7a | 41 | E41N | GaG | AaC | 1 | 5 | B.1.1.7 | 0.000001 |
ORF7a | 41 | E41K | Gag | Aag | 4 | 5 | B.1.160 | 0.000125 |
ORF7a | 41 | E41X | Gag | Tag | 4 | 5 | B.1.160 | 0.000125 |
ORF7a | 41 | E41K | GaG | AaA | 1 | 5 | B.1.160 | 0.000031 |
ORF7a | 41 | E41X | GaG | TaA | 1 | 5 | B.1.160 | 0.000031 |
ORF7a | 41 | E41del | GAG | --- | 5 | 5 | B.1.177.44 | 0.002595 |
ORF7a | 41 | E41E | gaG | gaA | 5 | 5 | B.1.400 | 0.002145 |
ORF7a | 41 | E41X | Gag | Tag | 5 | 5 | B.1.429 | 0.000118 |
ORF7a | 41 | E41E | gaG | gaA | 5 | 5 | B.1.525 | 0.000566 |
ORF7a | 41 | E41D | gaG | gaT | 4 | 5 | B.1.526 | 0.000094 |
ORF7a | 41 | E41D | gaG | gaC | 1 | 5 | B.1.526 | 0.000024 |
ORF7a | 41 | E41A | gAg | gCg | 4 | 4 | A.2.5 | 0.001996 |
ORF7a | 41 | E41M | GAg | ATg | 4 | 4 | All | 0.000001 |
ORF7a | 41 | E41X | Gag | Tag | 4 | 4 | AY.100 | 0.000184 |
ORF7a | 41 | E41Q | Gag | Cag | 4 | 4 | AY.102 | 0.000106 |
ORF7a | 41 | E41E | gaG | gaA | 4 | 4 | AY.117 | 0.000338 |
ORF7a | 41 | E41del | GAG | --- | 4 | 4 | AY.121 | 0.000541 |
ORF7a | 41 | E41D | gaG | gaT | 4 | 4 | AY.23 | 0.000279 |
ORF7a | 41 | E41G | gAg | gGg | 4 | 4 | AY.25 | 0.000024 |
ORF7a | 41 | E41del2 | gAG | g-- | 4 | 4 | AY.29 | 0.000063 |
ORF7a | 41 | E41del | GAG | --- | 4 | 4 | AY.40 | 0.003857 |
ORF7a | 41 | E41K | Gag | Aag | 4 | 4 | AY.44 | 0.000024 |
ORF7a | 41 | E41D | gaG | gaT | 4 | 4 | AY.45 | 0.000487 |
ORF7a | 41 | E41K | Gag | Aag | 4 | 4 | AY.46.5 | 0.000794 |
ORF7a | 41 | E41del | GAG | --- | 4 | 4 | AY.5 | 0.000083 |
ORF7a | 41 | E41V | gAg | gTg | 4 | 4 | AY.6 | 0.000165 |
ORF7a | 41 | E41D | gaG | gaT | 4 | 4 | AY.61 | 0.000419 |
ORF7a | 41 | E41D | gaG | gaT | 4 | 4 | AY.84 | 0.00175 |
ORF7a | 41 | E41D | gaG | gaT | 4 | 4 | AY.9.2 | 0.000147 |
ORF7a | 41 | E41D | gaG | gaT | 4 | 4 | AY.91 | 0.002922 |
ORF7a | 41 | E41D | gaG | gaT | 4 | 4 | AY.92 | 0.001149 |
ORF7a | 41 | E41D | gaG | gaT | 4 | 4 | AY.98 | 0.000316 |
ORF7a | 41 | E41K | Gag | Aag | 4 | 4 | B.1 | 0.000037 |
ORF7a | 41 | E41X | Gag | Tag | 3 | 4 | B.1.1 | 0.000054 |
ORF7a | 41 | E41X | GaG | TaA | 1 | 4 | B.1.1 | 0.000018 |
ORF7a | 41 | E41G | gAg | gGg | 4 | 4 | B.1.1.274 | 0.020202 |
ORF7a | 41 | E41del | GAG | --- | 4 | 4 | B.1.160 | 0.000125 |
ORF7a | 41 | E41V | gAg | gTg | 2 | 4 | B.1.160 | 0.000062 |
ORF7a | 41 | E41V | gAG | gTA | 1 | 4 | B.1.160 | 0.000031 |
ORF7a | 41 | E41V | gAG | gTT | 1 | 4 | B.1.160 | 0.000031 |
ORF7a | 41 | E41K | Gag | Aag | 4 | 4 | B.1.2 | 0.000035 |
ORF7a | 41 | E41D | gaG | gaT | 4 | 4 | B.1.351 | 0.000119 |
ORF7a | 41 | E41I | GAG | ATT | 3 | 4 | B.1.617.2 | 0.000011 |
ORF7a | 41 | E41S | GAG | TCT | 3 | 4 | B.1.617.2 | 0.000011 |
ORF7a | 41 | E41S | GAG | TCC | 1 | 4 | B.1.617.2 | 0.000004 |
ORF7a | 41 | E41I | GAG | ATA | 1 | 4 | B.1.617.2 | 0.000004 |
ORF7a | 41 | E41D | gaG | gaT | 4 | 4 | L.1 | 0.007619 |
ORF7a | 41 | E41K | Gag | Aag | 3 | 4 | P.1 | 0.000047 |
ORF7a | 41 | E41K | GaG | AaA | 1 | 4 | P.1 | 0.000016 |
ORF7a | 41 | E41del | GAG | --- | 4 | 4 | R.1 | 0.00036 |
ORF7a | 41 | E41L | GAg | TTg | 3 | 3 | AY.111 | 0.000549 |
ORF7a | 41 | E41del | GAG | --- | 3 | 3 | AY.118 | 0.000188 |
ORF7a | 41 | E41X | Gag | Tag | 3 | 3 | AY.119 | 0.000106 |
ORF7a | 41 | E41del | GAG | --- | 3 | 3 | AY.119 | 0.000106 |
ORF7a | 41 | E41E | gaG | gaA | 3 | 3 | AY.119 | 0.000106 |
ORF7a | 41 | E41del | GAG | --- | 3 | 3 | AY.120 | 0.000112 |
ORF7a | 41 | E41E | gaG | gaA | 3 | 3 | AY.23 | 0.000209 |
ORF7a | 41 | E41E | gaG | gaA | 3 | 3 | AY.24 | 0.001293 |
ORF7a | 41 | E41Q | Gag | Cag | 2 | 3 | AY.25 | 0.000012 |
ORF7a | 41 | E41H | GaG | CaC | 2 | 3 | AY.25 | 0.000012 |
ORF7a | 41 | E41H | GaG | CaT | 1 | 3 | AY.25 | 0.000006 |
ORF7a | 41 | E41Q | GaG | CaA | 1 | 3 | AY.25 | 0.000006 |
ORF7a | 41 | E41K | Gag | Aag | 3 | 3 | AY.26 | 0.000085 |
ORF7a | 41 | E41del | GAG | --- | 3 | 3 | AY.35 | 0.000699 |
ORF7a | 41 | E41A | gAg | gCg | 3 | 3 | AY.39 | 0.000074 |
ORF7a | 41 | E41V | gAg | gTg | 3 | 3 | AY.4 | 0.000005 |
ORF7a | 41 | E41D | gaG | gaT | 3 | 3 | AY.4.3 | 0.002525 |
ORF7a | 41 | E41del | GAG | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF7a | 41 | E41del | GAG | --- | 3 | 3 | AY.42 | 0.000121 |
ORF7a | 41 | E41A | gAg | gCg | 3 | 3 | AY.44 | 0.000018 |
ORF7a | 41 | E41G | gAg | gGg | 3 | 3 | AY.5 | 0.000062 |
ORF7a | 41 | E41del | GAG | --- | 3 | 3 | AY.54 | 0.000286 |
ORF7a | 41 | E41X | Gag | Tag | 3 | 3 | AY.61 | 0.000314 |
ORF7a | 41 | E41D | gaG | gaT | 3 | 3 | AY.68 | 0.000821 |
ORF7a | 41 | E41del | GAG | --- | 3 | 3 | AY.75 | 0.000168 |
ORF7a | 41 | E41del | GAG | --- | 3 | 3 | AY.88 | 0.002653 |
ORF7a | 41 | E41E | gaG | gaA | 3 | 3 | AY.98 | 0.000237 |
ORF7a | 41 | E41H | GaG | CaT | 3 | 3 | B.1 | 0.000027 |
ORF7a | 41 | E41F | GAG | TTT | 3 | 3 | B.1 | 0.000027 |
ORF7a | 41 | E41Y | GaG | TaT | 3 | 3 | B.1 | 0.000027 |
ORF7a | 41 | E41P | GAg | CCg | 1 | 3 | B.1 | 0.000009 |
ORF7a | 41 | E41P | GAG | CCA | 1 | 3 | B.1 | 0.000009 |
ORF7a | 41 | E41P | GAG | CCT | 1 | 3 | B.1 | 0.000009 |
ORF7a | 41 | E41D | gaG | gaT | 3 | 3 | B.1.1.1 | 0.00098 |
ORF7a | 41 | E41Q | Gag | Cag | 3 | 3 | B.1.1.214 | 0.000166 |
ORF7a | 41 | E41del | GAG | --- | 3 | 3 | B.1.1.25 | 0.001706 |
ORF7a | 41 | E41E | gaG | gaA | 3 | 3 | B.1.1.519 | 0.000119 |
ORF7a | 41 | E41D | gaG | gaT | 3 | 3 | B.1.1.89 | 0.018182 |
ORF7a | 41 | E41X | Gag | Tag | 3 | 3 | B.1.177 | 0.00004 |
ORF7a | 41 | E41del | GAG | --- | 3 | 3 | B.1.234 | 0.000396 |
ORF7a | 41 | E41del | GAG | --- | 3 | 3 | B.1.351 | 0.000089 |
ORF7a | 41 | E41E | gaG | gaA | 3 | 3 | B.1.427 | 0.000151 |
ORF7a | 41 | E41X | Gag | Tag | 3 | 3 | B.1.526 | 0.000071 |
ORF7a | 41 | E41F | GAG | TTT | 3 | 3 | B.1.617.2 | 0.000011 |
ORF7a | 41 | E41Y | GaG | TaT | 2 | 3 | B.1.617.2 | 0.000008 |
ORF7a | 41 | E41Y | GaG | TaC | 1 | 3 | B.1.617.2 | 0.000004 |
ORF7a | 41 | E41del | GAG | --- | 3 | 3 | B.1.626 | 0.017143 |
ORF7a | 41 | E41R | GAg | AGg | 3 | 3 | C.36 | 0.002732 |
ORF7a | 41 | E41X | Gag | Tag | 3 | 3 | D.2 | 0.000225 |
ORF7a | 41 | E41Q | Gag | Cag | 3 | 3 | P.1 | 0.000047 |
ORF7a | 41 | E41del | GAG | --- | 3 | 3 | Q.8 | 0.000495 |
ORF7a | 41 | E41del2 | GAG | --A | 2 | 2 | 0.111111 | |
ORF7a | 41 | E41del | GAG | --- | 2 | 2 | A | 0.000774 |
ORF7a | 41 | E41E | gaG | gaA | 2 | 2 | A.2.5 | 0.000998 |
ORF7a | 41 | E41del | GAG | --- | 2 | 2 | A.28 | 0.005291 |
ORF7a | 41 | E41W | GAg | TGg | 2 | 2 | All | 0 |
ORF7a | 41 | E41K | Gag | Aag | 2 | 2 | AY.100 | 0.000092 |
ORF7a | 41 | E41D | gaG | gaT | 2 | 2 | AY.100 | 0.000092 |
ORF7a | 41 | E41del | GAG | --- | 2 | 2 | AY.110 | 0.000225 |
ORF7a | 41 | E41D | gaG | gaT | 2 | 2 | AY.110 | 0.000225 |
ORF7a | 41 | E41del | GAG | --- | 2 | 2 | AY.114 | 0.000462 |
ORF7a | 41 | E41X | Gag | Tag | 2 | 2 | AY.116 | 0.000574 |
ORF7a | 41 | E41Q | Gag | Cag | 2 | 2 | AY.119 | 0.000071 |
ORF7a | 41 | E41X | Gag | Tag | 2 | 2 | AY.12 | 0.000632 |
ORF7a | 41 | E41del | GAG | --- | 2 | 2 | AY.120.1 | 0.000642 |
ORF7a | 41 | E41X | Gag | Tag | 2 | 2 | AY.16 | 0.000759 |
ORF7a | 41 | E41X | Gag | Tag | 2 | 2 | AY.20 | 0.000078 |
ORF7a | 41 | E41D | gaG | gaC | 2 | 2 | AY.29 | 0.000032 |
ORF7a | 41 | E41X | Gag | Tag | 2 | 2 | AY.29 | 0.000032 |
ORF7a | 41 | E41del | GAG | --- | 2 | 2 | AY.29.1 | 0.000441 |
ORF7a | 41 | E41V | gAg | gTg | 2 | 2 | AY.3 | 0.00002 |
ORF7a | 41 | E41K | Gag | Aag | 2 | 2 | AY.3 | 0.00002 |
ORF7a | 41 | E41del2 | gAG | g-- | 2 | 2 | AY.3 | 0.00002 |
ORF7a | 41 | E41K | GaG | AaA | 1 | 2 | AY.3.1 | 0.000085 |
ORF7a | 41 | E41K | Gag | Aag | 1 | 2 | AY.3.1 | 0.000085 |
ORF7a | 41 | E41D | gaG | gaT | 2 | 2 | AY.30 | 0.000791 |
ORF7a | 41 | E41D | gaG | gaT | 2 | 2 | AY.31 | 0.037037 |
ORF7a | 41 | E41del | GAG | --- | 2 | 2 | AY.33 | 0.000134 |
ORF7a | 41 | E41del | GAG | --- | 2 | 2 | AY.34 | 0.000194 |
ORF7a | 41 | E41del2 | gAG | g-- | 2 | 2 | AY.4 | 0.000003 |
ORF7a | 41 | E41A | gAg | gCg | 1 | 2 | AY.4 | 0.000002 |
ORF7a | 41 | E41A | gAG | gCA | 1 | 2 | AY.4 | 0.000002 |
ORF7a | 41 | E41E | gaG | gaA | 2 | 2 | AY.4.2 | 0.000043 |
ORF7a | 41 | E41D | gaG | gaT | 2 | 2 | AY.4.4 | 0.000818 |
ORF7a | 41 | E41E | gaG | gaA | 2 | 2 | AY.42 | 0.00008 |
ORF7a | 41 | E41G | gAg | gGg | 2 | 2 | AY.44 | 0.000012 |
ORF7a | 41 | E41del1 | Gag | -ag | 1 | 2 | AY.44 | 0.000006 |
ORF7a | 41 | E41del1 | gaG | ga- | 1 | 2 | AY.44 | 0.000006 |
ORF7a | 41 | E41del | GAG | --- | 2 | 2 | AY.45 | 0.000243 |
ORF7a | 41 | E41X | Gag | Tag | 2 | 2 | AY.46 | 0.000208 |
ORF7a | 41 | E41V | gAg | gTg | 2 | 2 | AY.46 | 0.000208 |
ORF7a | 41 | E41X | Gag | Tag | 2 | 2 | AY.46.2 | 0.001271 |
ORF7a | 41 | E41Q | Gag | Cag | 2 | 2 | AY.46.4 | 0.000329 |
ORF7a | 41 | E41E | gaG | gaA | 2 | 2 | AY.48 | 0.00093 |
ORF7a | 41 | E41D | gaG | gaT | 2 | 2 | AY.49 | 0.00639 |
ORF7a | 41 | E41X | Gag | Tag | 2 | 2 | AY.5 | 0.000041 |
ORF7a | 41 | E41D | gaG | gaT | 2 | 2 | AY.52 | 0.001629 |
ORF7a | 41 | E41D | gaG | gaT | 2 | 2 | AY.54 | 0.000191 |
ORF7a | 41 | E41E | gaG | gaA | 2 | 2 | AY.54 | 0.000191 |
ORF7a | 41 | E41X | Gag | Tag | 2 | 2 | AY.54 | 0.000191 |
ORF7a | 41 | E41D | gaG | gaT | 2 | 2 | AY.56 | 0.00321 |
ORF7a | 41 | E41V | gAg | gTg | 2 | 2 | AY.74 | 0.000231 |
ORF7a | 41 | E41del2 | gAG | g-- | 2 | 2 | AY.75 | 0.000112 |
ORF7a | 41 | E41D | gaG | gaT | 2 | 2 | AY.85 | 0.000854 |
ORF7a | 41 | E41del | GAG | --- | 2 | 2 | AY.9 | 0.000135 |
ORF7a | 41 | E41Q | Gag | Cag | 2 | 2 | AY.9 | 0.000135 |
ORF7a | 41 | E41D | gaG | gaC | 1 | 2 | AY.9.1 | 0.000084 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 2 | AY.9.1 | 0.000084 |
ORF7a | 41 | E41X | Gag | Tag | 2 | 2 | AY.9.2 | 0.000073 |
ORF7a | 41 | E41E | gaG | gaA | 2 | 2 | AY.9.2 | 0.000073 |
ORF7a | 41 | E41E | gaG | gaA | 2 | 2 | AY.91 | 0.001461 |
ORF7a | 41 | E41Q | Gag | Cag | 2 | 2 | AY.95 | 0.001522 |
ORF7a | 41 | E41del | GAG | --- | 2 | 2 | AY.98 | 0.000158 |
ORF7a | 41 | E41D | gaG | gaT | 2 | 2 | B | 0.000256 |
ORF7a | 41 | E41W | GAg | TGg | 2 | 2 | B.1 | 0.000018 |
ORF7a | 41 | E41Y | GaG | TaC | 1 | 2 | B.1.1 | 0.000018 |
ORF7a | 41 | E41T | GAG | ACA | 1 | 2 | B.1.1 | 0.000018 |
ORF7a | 41 | E41T | GAg | ACg | 1 | 2 | B.1.1 | 0.000018 |
ORF7a | 41 | E41N | GaG | AaT | 1 | 2 | B.1.1 | 0.000018 |
ORF7a | 41 | E41Y | GaG | TaT | 1 | 2 | B.1.1 | 0.000018 |
ORF7a | 41 | E41N | GaG | AaC | 1 | 2 | B.1.1 | 0.000018 |
ORF7a | 41 | E41A | gAg | gCg | 1 | 2 | B.1.1 | 0.000018 |
ORF7a | 41 | E41V | gAG | gTA | 1 | 2 | B.1.1 | 0.000018 |
ORF7a | 41 | E41A | gAG | gCA | 1 | 2 | B.1.1 | 0.000018 |
ORF7a | 41 | E41V | gAg | gTg | 1 | 2 | B.1.1 | 0.000018 |
ORF7a | 41 | E41X | Gag | Tag | 2 | 2 | B.1.1.220 | 0.003717 |
ORF7a | 41 | E41D | gaG | gaT | 2 | 2 | B.1.1.263 | 0.003115 |
ORF7a | 41 | E41V | gAg | gTg | 2 | 2 | B.1.1.289 | 0.004167 |
ORF7a | 41 | E41E | gaG | gaA | 2 | 2 | B.1.1.322 | 0.017544 |
ORF7a | 41 | E41D | gaG | gaT | 2 | 2 | B.1.1.519 | 0.000079 |
ORF7a | 41 | E41I | GAG | ATA | 1 | 2 | B.1.1.7 | 0.000001 |
ORF7a | 41 | E41I | GAG | ATC | 1 | 2 | B.1.1.7 | 0.000001 |
ORF7a | 41 | E41E | gaG | gaA | 2 | 2 | B.1.160 | 0.000062 |
ORF7a | 41 | E41I | GAG | ATA | 1 | 2 | B.1.160 | 0.000031 |
ORF7a | 41 | E41I | GAG | ATT | 1 | 2 | B.1.160 | 0.000031 |
ORF7a | 41 | E41L | GAG | TTA | 1 | 2 | B.1.160 | 0.000031 |
ORF7a | 41 | E41L | GAg | TTg | 1 | 2 | B.1.160 | 0.000031 |
ORF7a | 41 | E41G | gAg | gGg | 2 | 2 | B.1.177 | 0.000026 |
ORF7a | 41 | E41V | gAg | gTg | 2 | 2 | B.1.177 | 0.000026 |
ORF7a | 41 | E41del | GAG | --- | 2 | 2 | B.1.177.43 | 0.002954 |
ORF7a | 41 | E41G | gAg | gGg | 2 | 2 | B.1.177.7 | 0.00033 |
ORF7a | 41 | E41del | GAG | --- | 2 | 2 | B.1.177.86 | 0.000367 |
ORF7a | 41 | E41V | gAg | gTg | 2 | 2 | B.1.2 | 0.000018 |
ORF7a | 41 | E41A | gAg | gCg | 2 | 2 | B.1.2 | 0.000018 |
ORF7a | 41 | E41X | Gag | Tag | 2 | 2 | B.1.234 | 0.000264 |
ORF7a | 41 | E41del | GAG | --- | 2 | 2 | B.1.258.11 | 0.000793 |
ORF7a | 41 | E41del | GAG | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF7a | 41 | E41X | Gag | Tag | 2 | 2 | B.1.36.17 | 0.000988 |
ORF7a | 41 | E41E | gaG | gaA | 2 | 2 | B.1.526 | 0.000047 |
ORF7a | 41 | E41I | GAG | ATA | 1 | 2 | B.1.576 | 0.000907 |
ORF7a | 41 | E41I | GAG | ATT | 1 | 2 | B.1.576 | 0.000907 |
ORF7a | 41 | E41G | gAg | gGg | 2 | 2 | B.1.580 | 0.00813 |
ORF7a | 41 | E41del | GAG | --- | 2 | 2 | B.1.596 | 0.000174 |
ORF7a | 41 | E41E | gaG | gaA | 2 | 2 | B.1.609 | 0.000959 |
ORF7a | 41 | E41X | Gag | Tag | 2 | 2 | B.1.617.1 | 0.000258 |
ORF7a | 41 | E41del1 | gaG | ga- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF7a | 41 | E41V | gAg | gTg | 1 | 2 | B.1.617.2 | 0.000004 |
ORF7a | 41 | E41V | gAG | gTA | 1 | 2 | B.1.617.2 | 0.000004 |
ORF7a | 41 | E41X | Gag | Tag | 2 | 2 | B.1.619.1 | 0.001283 |
ORF7a | 41 | E41del | GAG | --- | 2 | 2 | C.36.3 | 0.001134 |
ORF7a | 41 | E41X | Gag | Tag | 2 | 2 | P.1.14 | 0.000096 |
ORF7a | 41 | E41X | Gag | Tag | 2 | 2 | P.1.17 | 0.000324 |
ORF7a | 41 | E41X | Gag | Tag | 2 | 2 | Q.1 | 0.000253 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | A | 0.000387 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | A.1 | 0.000282 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | A.2.2 | 0.001689 |
ORF7a | 41 | E41V | gAg | gTg | 1 | 1 | A.2.5 | 0.000499 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | AL.1 | 0.012987 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | AY.10 | 0.00053 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | AY.10 | 0.00053 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | AY.101 | 0.00049 |
ORF7a | 41 | E41V | gAg | gTg | 1 | 1 | AY.102 | 0.000027 |
ORF7a | 41 | E41A | gAg | gCg | 1 | 1 | AY.102 | 0.000027 |
ORF7a | 41 | E41Q | Gag | Cag | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 41 | E41A | gAg | gCg | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | AY.107 | 0.000466 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | AY.108 | 0.001103 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | AY.108 | 0.001103 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | AY.109 | 0.00074 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | AY.109 | 0.00074 |
ORF7a | 41 | E41K | GaG | AaA | 1 | 1 | AY.110 | 0.000113 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | AY.110 | 0.000113 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | AY.111 | 0.000183 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | AY.113 | 0.000142 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | AY.116 | 0.000287 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | AY.116.1 | 0.000311 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | AY.118 | 0.000063 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | AY.12 | 0.000316 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | AY.120 | 0.000037 |
ORF7a | 41 | E41G | gAg | gGg | 1 | 1 | AY.120 | 0.000037 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | AY.120 | 0.000037 |
ORF7a | 41 | E41Q | Gag | Cag | 1 | 1 | AY.120 | 0.000037 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | AY.13 | 0.000161 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | AY.14 | 0.000088 |
ORF7a | 41 | E41A | gAg | gCg | 1 | 1 | AY.14 | 0.000088 |
ORF7a | 41 | E41G | gAg | gGg | 1 | 1 | AY.14 | 0.000088 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | AY.16 | 0.00038 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | AY.16.1 | 0.00047 |
ORF7a | 41 | E41K | Gag | Aag | 1 | 1 | AY.16.1 | 0.00047 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | AY.18 | 0.010101 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | AY.20 | 0.000039 |
ORF7a | 41 | E41A | gAg | gCg | 1 | 1 | AY.20 | 0.000039 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | AY.22 | 0.002092 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | AY.23.1 | 0.000417 |
ORF7a | 41 | E41M | GAg | ATg | 1 | 1 | AY.25 | 0.000006 |
ORF7a | 41 | E41K | GaG | AaA | 1 | 1 | AY.25 | 0.000006 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | AY.27 | 0.000065 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | AY.28 | 0.00189 |
ORF7a | 41 | E41K | Gag | Aag | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 41 | E41L | GAg | TTg | 1 | 1 | AY.3 | 0.00001 |
ORF7a | 41 | E41Y | GaG | TaT | 1 | 1 | AY.3 | 0.00001 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | AY.3.1 | 0.000085 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | AY.30 | 0.000396 |
ORF7a | 41 | E41del2 | GAG | A-- | 1 | 1 | AY.30 | 0.000396 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | AY.32 | 0.000532 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | AY.32 | 0.000532 |
ORF7a | 41 | E41del2 | gAG | g-- | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | AY.34.1 | 0.00051 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | AY.35 | 0.000233 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | AY.37 | 0.000316 |
ORF7a | 41 | E41G | gAg | gGg | 1 | 1 | AY.38 | 0.000499 |
ORF7a | 41 | E41K | Gag | Aag | 1 | 1 | AY.39 | 0.000025 |
ORF7a | 41 | E41G | gAg | gGg | 1 | 1 | AY.39.1 | 0.00004 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | AY.39.1 | 0.00004 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | AY.4.2 | 0.000022 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | AY.4.5 | 0.000107 |
ORF7a | 41 | E41G | gAg | gGg | 1 | 1 | AY.40 | 0.000964 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | AY.41 | 0.000294 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | AY.42 | 0.00004 |
ORF7a | 41 | E41A | gAg | gCg | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 41 | E41G | gAg | gGg | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 41 | E41del2 | GAG | --N | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 41 | E41K | Gag | Aag | 1 | 1 | AY.46 | 0.000104 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | AY.46 | 0.000104 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | AY.46.1 | 0.001027 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | AY.46.1 | 0.001027 |
ORF7a | 41 | E41Q | Gag | Cag | 1 | 1 | AY.46.2 | 0.000635 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | AY.46.4 | 0.000165 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | AY.46.4 | 0.000165 |
ORF7a | 41 | E41del1 | gaG | ga- | 1 | 1 | AY.46.6 | 0.000072 |
ORF7a | 41 | E41K | Gag | Aag | 1 | 1 | AY.46.6 | 0.000072 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | AY.46.6 | 0.000072 |
ORF7a | 41 | E41Q | Gag | Cag | 1 | 1 | AY.5 | 0.000021 |
ORF7a | 41 | E41K | Gag | Aag | 1 | 1 | AY.5 | 0.000021 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | AY.5.3 | 0.000337 |
ORF7a | 41 | E41Q | Gag | Cag | 1 | 1 | AY.5.4 | 0.000277 |
ORF7a | 41 | E41del1 | Gag | -ag | 1 | 1 | AY.5.4 | 0.000277 |
ORF7a | 41 | E41Y | GaG | TaT | 1 | 1 | AY.52 | 0.000814 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | AY.52 | 0.000814 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | AY.53 | 0.000288 |
ORF7a | 41 | E41del1 | gaG | ga- | 1 | 1 | AY.54 | 0.000095 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | AY.55 | 0.000917 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | AY.55 | 0.000917 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | AY.6 | 0.000041 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | AY.6 | 0.000041 |
ORF7a | 41 | E41G | gAg | gGg | 1 | 1 | AY.60 | 0.000938 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | AY.60 | 0.000938 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | AY.61 | 0.000105 |
ORF7a | 41 | E41Q | Gag | Cag | 1 | 1 | AY.61 | 0.000105 |
ORF7a | 41 | E41del2 | gAG | g-- | 1 | 1 | AY.61 | 0.000105 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | AY.63 | 0.000387 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | AY.65 | 0.000533 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | AY.65 | 0.000533 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | AY.66 | 0.00107 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | AY.69 | 0.000187 |
ORF7a | 41 | E41K | Gag | Aag | 1 | 1 | AY.7 | 0.000196 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | AY.7.1 | 0.000113 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | AY.70 | 0.000209 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | AY.70 | 0.000209 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | AY.73 | 0.000665 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | AY.73 | 0.000665 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | AY.74 | 0.000116 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | AY.74 | 0.000116 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | AY.75.1 | 0.00018 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | AY.76 | 0.004831 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | AY.79 | 0.001211 |
ORF7a | 41 | E41R | GAG | AGA | 1 | 1 | AY.79 | 0.001211 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | AY.80 | 0.001129 |
ORF7a | 41 | E41Q | Gag | Cag | 1 | 1 | AY.81 | 0.001992 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | AY.82 | 0.001357 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | AY.85 | 0.000427 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | AY.86 | 0.00083 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | AY.87 | 0.000833 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | AY.88 | 0.000884 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | AY.89 | 0.004902 |
ORF7a | 41 | E41K | Gag | Aag | 1 | 1 | AY.9 | 0.000068 |
ORF7a | 41 | E41del2 | GAg | --g | 1 | 1 | AY.9 | 0.000068 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | AY.9.1 | 0.000084 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 41 | E41del1 | gaG | ga- | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | AY.91 | 0.00073 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | AY.92 | 0.000287 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | AY.92 | 0.000287 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | AY.94 | 0.000443 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | AY.95 | 0.000761 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | AY.98.1 | 0.000048 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | AY.99.1 | 0.001553 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | AY.99.2 | 0.000092 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | AY.99.2 | 0.000092 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B | 0.000128 |
ORF7a | 41 | E41N | GaG | AaC | 1 | 1 | B.1 | 0.000009 |
ORF7a | 41 | E41R | GAg | AGg | 1 | 1 | B.1 | 0.000009 |
ORF7a | 41 | E41del1 | Gag | -ag | 1 | 1 | B.1 | 0.000009 |
ORF7a | 41 | E41M | GAg | ATg | 1 | 1 | B.1.1 | 0.000018 |
ORF7a | 41 | E41I | GAG | ATA | 1 | 1 | B.1.1 | 0.000018 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | B.1.1.121 | 0.002427 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | B.1.1.163 | 0.007634 |
ORF7a | 41 | E41K | Gag | Aag | 1 | 1 | B.1.1.176 | 0.000439 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | B.1.1.181 | 0.004545 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | B.1.1.216 | 0.00089 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.1.222 | 0.000204 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | B.1.1.222 | 0.000204 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.1.277 | 0.000759 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | B.1.1.282 | 0.011628 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | B.1.1.284 | 0.000107 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | B.1.1.284 | 0.000107 |
ORF7a | 41 | E41K | Gag | Aag | 1 | 1 | B.1.1.297 | 0.002237 |
ORF7a | 41 | E41K | Gag | Aag | 1 | 1 | B.1.1.298 | 0.000862 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | B.1.1.301 | 0.001179 |
ORF7a | 41 | E41del2 | GAg | --g | 1 | 1 | B.1.1.317 | 0.000412 |
ORF7a | 41 | E41A | gAg | gCg | 1 | 1 | B.1.1.318 | 0.000302 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.1.318 | 0.000302 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | B.1.1.354 | 0.004386 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | B.1.1.365 | 0.005587 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | B.1.1.369 | 0.000446 |
ORF7a | 41 | E41G | gAg | gGg | 1 | 1 | B.1.1.372 | 0.000689 |
ORF7a | 41 | E41K | Gag | Aag | 1 | 1 | B.1.1.385 | 0.004464 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.1.522 | 0.017241 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | B.1.1.523 | 0.001563 |
ORF7a | 41 | E41F | GAG | TTC | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 41 | E41L | GAG | TTA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.115 | 0.021739 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | B.1.147 | 0.000756 |
ORF7a | 41 | E41N | GaG | AaT | 1 | 1 | B.1.160 | 0.000031 |
ORF7a | 41 | E41M | GAg | ATg | 1 | 1 | B.1.160 | 0.000031 |
ORF7a | 41 | E41F | GAG | TTT | 1 | 1 | B.1.160 | 0.000031 |
ORF7a | 41 | E41Y | GaG | TaT | 1 | 1 | B.1.160 | 0.000031 |
ORF7a | 41 | E41L | GAg | TTg | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 41 | E41Q | Gag | Cag | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | B.1.177.15 | 0.000631 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | B.1.177.4 | 0.000211 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | B.1.177.4 | 0.000211 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF7a | 41 | E41K | Gag | Aag | 1 | 1 | B.1.177.44 | 0.000519 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF7a | 41 | E41I | GAG | ATA | 1 | 1 | B.1.177.63 | 0.002703 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | B.1.177.73 | 0.000566 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.177.80 | 0.001912 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF7a | 41 | E41N | GaG | AaT | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 41 | E41Q | Gag | Cag | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 41 | E41K | Gag | Aag | 1 | 1 | B.1.206 | 0.000816 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.214.2 | 0.0006 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF7a | 41 | E41K | Gag | Aag | 1 | 1 | B.1.221 | 0.000071 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.240 | 0.000216 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | B.1.240 | 0.000216 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | B.1.243 | 0.00007 |
ORF7a | 41 | E41del1 | GAG | -GA | 1 | 1 | B.1.243 | 0.00007 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | B.1.260 | 0.003344 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | B.1.301 | 0.005917 |
ORF7a | 41 | E41V | gAg | gTg | 1 | 1 | B.1.311 | 0.000275 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | B.1.320 | 0.001245 |
ORF7a | 41 | E41G | gAg | gGg | 1 | 1 | B.1.336 | 0.002439 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.351.2 | 0.000303 |
ORF7a | 41 | E41K | Gag | Aag | 1 | 1 | B.1.351.5 | 0.0006 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | B.1.356 | 0.001727 |
ORF7a | 41 | E41H | GaG | CaT | 1 | 1 | B.1.36 | 0.000146 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | B.1.36.16 | 0.001425 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | B.1.36.18 | 0.00042 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | B.1.367 | 0.000792 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.390 | 0.010638 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | B.1.396 | 0.000706 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | B.1.398 | 0.002976 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | B.1.416.1 | 0.001563 |
ORF7a | 41 | E41V | gAg | gTg | 1 | 1 | B.1.417 | 0.028571 |
ORF7a | 41 | E41Q | Gag | Cag | 1 | 1 | B.1.417 | 0.028571 |
ORF7a | 41 | E41L | GAg | CTg | 1 | 1 | B.1.417 | 0.028571 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | B.1.428 | 0.00102 |
ORF7a | 41 | E41G | gAg | gGg | 1 | 1 | B.1.429 | 0.000024 |
ORF7a | 41 | E41K | Gag | Aag | 1 | 1 | B.1.429 | 0.000024 |
ORF7a | 41 | E41del2 | GAG | A-- | 1 | 1 | B.1.429 | 0.000024 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.438.1 | 0.000107 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.459 | 0.004082 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | B.1.462 | 0.007246 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.470 | 0.001404 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | B.1.497 | 0.000315 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | B.1.525 | 0.000113 |
ORF7a | 41 | E41K | Gag | Aag | 1 | 1 | B.1.525 | 0.000113 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.535 | 0.028571 |
ORF7a | 41 | E41A | gAg | gCg | 1 | 1 | B.1.538 | 0.008065 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | B.1.564 | 0.000426 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | B.1.565 | 0.00081 |
ORF7a | 41 | E41G | gAg | gGg | 1 | 1 | B.1.575 | 0.000303 |
ORF7a | 41 | E41L | GAG | TTA | 1 | 1 | B.1.576 | 0.000907 |
ORF7a | 41 | E41X | GaG | TaA | 1 | 1 | B.1.576 | 0.000907 |
ORF7a | 41 | E41F | GAG | TTT | 1 | 1 | B.1.576 | 0.000907 |
ORF7a | 41 | E41K | GaG | AaA | 1 | 1 | B.1.576 | 0.000907 |
ORF7a | 41 | E41N | GaG | AaT | 1 | 1 | B.1.576 | 0.000907 |
ORF7a | 41 | E41Y | GaG | TaT | 1 | 1 | B.1.576 | 0.000907 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.582 | 0.000491 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | B.1.586 | 0.010989 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | B.1.595 | 0.000261 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | B.1.596 | 0.000087 |
ORF7a | 41 | E41M | GAg | ATg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 41 | E41T | GAG | ACT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 41 | E41N | GaG | AaT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 41 | E41H | GaG | CaT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 41 | E41P | GAG | CCT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 41 | E41del2 | gAG | g-- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF7a | 41 | E41G | gAg | gGg | 1 | 1 | B.1.620 | 0.000946 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | B.1.621 | 0.000089 |
ORF7a | 41 | E41del2 | gAG | g-- | 1 | 1 | B.1.621 | 0.000089 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | B.1.623 | 0.000536 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | B.1.628 | 0.000352 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.636 | 0.006711 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | B.1.637 | 0.000073 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | B.1.637 | 0.000073 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | B.1.93 | 0.000934 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | B.4.5 | 0.011905 |
ORF7a | 41 | E41K | Gag | Aag | 1 | 1 | C.36.3 | 0.000567 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | C.37 | 0.000116 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | C.37 | 0.000116 |
ORF7a | 41 | E41K | Gag | Aag | 1 | 1 | C.37 | 0.000116 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | K.3 | 0.006173 |
ORF7a | 41 | E41A | gAg | gCg | 1 | 1 | P.1 | 0.000016 |
ORF7a | 41 | E41G | gAg | gGg | 1 | 1 | P.1 | 0.000016 |
ORF7a | 41 | E41X | Gag | Tag | 1 | 1 | P.1.1 | 0.000318 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF7a | 41 | E41E | gaG | gaA | 1 | 1 | P.1.15 | 0.000232 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | P.1.16 | 0.000374 |
ORF7a | 41 | E41del | GAG | --- | 1 | 1 | P.2 | 0.000187 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | Q.1 | 0.000126 |
ORF7a | 41 | E41G | gAg | gGg | 1 | 1 | Q.1 | 0.000126 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | Q.4 | 0.000455 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | Q.8 | 0.000165 |
ORF7a | 41 | E41D | gaG | gaT | 1 | 1 | R.1 | 0.00009 |
ORF7a | 41 | E41G | gAg | gGg | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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