CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 40 | Y40Y | syn | taC | taT | 21751 | 21751 | 1 | 27511-27513 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 40 | Y40Y | taC | taT | 21751 | 21751 | All | 0.00416 |
ORF7a | 40 | Y40Y | taC | taT | 10374 | 10374 | B.1.1.7 | 0.009287 |
ORF7a | 40 | Y40Y | taC | taT | 2792 | 2792 | AY.4 | 0.004346 |
ORF7a | 40 | Y40Y | taC | taT | 1274 | 1274 | B.1.429 | 0.029976 |
ORF7a | 40 | Y40Y | taC | taT | 562 | 562 | C.30 | 0.970639 |
ORF7a | 40 | Y40Y | taC | taT | 423 | 423 | AY.103 | 0.002626 |
ORF7a | 40 | Y40Y | taC | taT | 422 | 422 | B.1.617.2 | 0.001589 |
ORF7a | 40 | Y40Y | taC | taT | 387 | 387 | B.1.177.16 | 0.257143 |
ORF7a | 40 | Y40Y | taC | taT | 378 | 378 | AY.25 | 0.002274 |
ORF7a | 40 | Y40Y | taC | taT | 364 | 364 | B.1.1.1 | 0.118915 |
ORF7a | 40 | Y40Y | taC | taT | 332 | 332 | AY.43 | 0.001471 |
ORF7a | 40 | Y40Y | taC | taT | 295 | 295 | B.1.1.434 | 0.102823 |
ORF7a | 40 | Y40Y | taC | taT | 289 | 289 | B.1.2 | 0.002545 |
ORF7a | 40 | Y40Y | taC | taT | 259 | 259 | B.1.1.39 | 0.132008 |
ORF7a | 40 | Y40Y | taC | taT | 250 | 250 | AY.74 | 0.028912 |
ORF7a | 40 | Y40Y | taC | taT | 198 | 198 | B.1 | 0.001814 |
ORF7a | 40 | Y40Y | taC | taT | 167 | 167 | AY.44 | 0.001016 |
ORF7a | 40 | Y40Y | taC | taT | 147 | 147 | C.30.1 | 0.986577 |
ORF7a | 40 | Y40Y | taC | taT | 139 | 139 | B.1.177.82 | 0.066348 |
ORF7a | 40 | Y40Y | taC | taT | 124 | 124 | AY.3 | 0.001233 |
ORF7a | 40 | Y40Y | taC | taT | 115 | 115 | AY.102 | 0.003049 |
ORF7a | 40 | Y40Y | taC | taT | 114 | 114 | Q.1 | 0.014401 |
ORF7a | 40 | Y40Y | taC | taT | 91 | 91 | B.1.1.519 | 0.003614 |
ORF7a | 40 | Y40Y | taC | taT | 85 | 85 | AY.120 | 0.00316 |
ORF7a | 40 | Y40Y | taC | taT | 84 | 84 | B.1.1 | 0.001524 |
ORF7a | 40 | Y40Y | taC | taT | 81 | 81 | P.1 | 0.001276 |
ORF7a | 40 | Y40Y | taC | taT | 71 | 71 | B.1.177 | 0.000935 |
ORF7a | 40 | Y40Y | taC | taT | 67 | 67 | AY.26 | 0.001897 |
ORF7a | 40 | Y40Y | taC | taT | 61 | 61 | AY.4.2 | 0.001323 |
ORF7a | 40 | Y40Y | taC | taT | 57 | 57 | AY.119 | 0.002013 |
ORF7a | 40 | Y40Y | taC | taT | 56 | 56 | P.1.13 | 0.050314 |
ORF7a | 40 | Y40Y | taC | taT | 53 | 53 | AY.29 | 0.000836 |
ORF7a | 40 | Y40Y | taC | taT | 47 | 47 | B.1.243 | 0.00327 |
ORF7a | 40 | Y40Y | taC | taT | 46 | 46 | B.1.160 | 0.001435 |
ORF7a | 40 | Y40Y | taC | taT | 41 | 41 | B.1.258.22 | 0.109333 |
ORF7a | 40 | Y40Y | taC | taT | 40 | 40 | B.1.1.318 | 0.01207 |
ORF7a | 40 | Y40Y | taC | taT | 37 | 37 | AY.100 | 0.001702 |
ORF7a | 40 | Y40Y | taC | taT | 36 | 36 | AY.114 | 0.00832 |
ORF7a | 40 | Y40Y | taC | taT | 32 | 32 | AY.117 | 0.002705 |
ORF7a | 40 | Y40Y | taC | taT | 32 | 32 | AY.118 | 0.002005 |
ORF7a | 40 | Y40Y | taC | taT | 32 | 32 | B.1.221 | 0.002273 |
ORF7a | 40 | Y40Y | taC | taT | 32 | 32 | B.1.351 | 0.000951 |
ORF7a | 40 | Y40Y | taC | taT | 31 | 31 | B.1.110.3 | 0.02227 |
ORF7a | 40 | Y40Y | taC | taT | 29 | 29 | AY.27 | 0.001877 |
ORF7a | 40 | Y40Y | taC | taT | 29 | 29 | AY.42 | 0.001167 |
ORF7a | 40 | Y40Y | taC | taT | 29 | 29 | B.1.177.57 | 0.008148 |
ORF7a | 40 | Y40Y | taC | taT | 28 | 28 | B.1.575 | 0.008495 |
ORF7a | 40 | Y40Y | taC | taT | 27 | 27 | AY.30 | 0.010685 |
ORF7a | 40 | Y40Y | taC | taT | 27 | 27 | B.1.258.17 | 0.002807 |
ORF7a | 40 | Y40Y | taC | taT | 26 | 26 | AF.1 | 0.962963 |
ORF7a | 40 | Y40Y | taC | taT | 26 | 26 | B.1.637 | 0.0019 |
ORF7a | 40 | Y40Y | taC | taT | 26 | 26 | D.2 | 0.001951 |
ORF7a | 40 | Y40Y | taC | taT | 25 | 25 | B.1.621 | 0.002213 |
ORF7a | 40 | Y40Y | taC | taT | 24 | 24 | AY.11 | 0.032129 |
ORF7a | 40 | Y40Y | taC | taT | 24 | 24 | R.1 | 0.00216 |
ORF7a | 40 | Y40Y | taC | taT | 23 | 23 | AY.39 | 0.000568 |
ORF7a | 40 | Y40Y | taC | taT | 23 | 23 | B.1.427 | 0.001161 |
ORF7a | 40 | Y40Y | taC | taT | 22 | 22 | AY.23 | 0.001534 |
ORF7a | 40 | Y40Y | taC | taT | 22 | 22 | B.1.576 | 0.019946 |
ORF7a | 40 | Y40Y | taC | taT | 20 | 20 | AY.5 | 0.000413 |
ORF7a | 40 | Y40Y | taC | taT | 20 | 20 | AY.98.1 | 0.000969 |
ORF7a | 40 | Y40Y | taC | taT | 17 | 17 | AY.20 | 0.000661 |
ORF7a | 40 | Y40Y | taC | taT | 17 | 17 | AY.75 | 0.000952 |
ORF7a | 40 | Y40Y | taC | taT | 17 | 17 | B.1.240 | 0.003665 |
ORF7a | 40 | Y40Y | taC | taT | 16 | 16 | AY.33 | 0.001068 |
ORF7a | 40 | Y40Y | taC | taT | 16 | 16 | AY.45 | 0.001947 |
ORF7a | 40 | Y40Y | taC | taT | 16 | 16 | B.1.1.372 | 0.011019 |
ORF7a | 40 | Y40Y | taC | taT | 13 | 13 | AY.39.1 | 0.000515 |
ORF7a | 40 | Y40Y | taC | taT | 13 | 13 | AY.91 | 0.009496 |
ORF7a | 40 | Y40Y | taC | taT | 12 | 12 | AY.9.2 | 0.000441 |
ORF7a | 40 | Y40Y | taC | taT | 12 | 12 | B.1.1.28 | 0.003735 |
ORF7a | 40 | Y40Y | taC | taT | 11 | 11 | AY.47 | 0.000342 |
ORF7a | 40 | Y40Y | taC | taT | 11 | 11 | AY.9 | 0.000744 |
ORF7a | 40 | Y40Y | taC | taT | 11 | 11 | B.1.1.258 | 0.035831 |
ORF7a | 40 | Y40Y | taC | taT | 10 | 10 | AE.8 | 0.00489 |
ORF7a | 40 | Y40Y | taC | taT | 10 | 10 | AY.46 | 0.001041 |
ORF7a | 40 | Y40Y | taC | taT | 10 | 10 | B.1.1.168 | 0.263158 |
ORF7a | 40 | Y40Y | taC | taT | 10 | 10 | B.1.400 | 0.00429 |
ORF7a | 40 | Y40Y | taC | taT | 9 | 9 | AY.75.1 | 0.001623 |
ORF7a | 40 | Y40Y | taC | taT | 9 | 9 | B.1.1.25 | 0.005117 |
ORF7a | 40 | Y40Y | taC | taT | 9 | 9 | B.1.258 | 0.000599 |
ORF7a | 40 | Y40Y | taC | taT | 9 | 9 | P.1.1 | 0.002859 |
ORF7a | 40 | Y40Y | taC | taT | 9 | 9 | P.2 | 0.00168 |
ORF7a | 40 | Y40Y | taC | taT | 8 | 8 | AY.116 | 0.002294 |
ORF7a | 40 | Y40Y | taC | taT | 8 | 8 | AY.35 | 0.001864 |
ORF7a | 40 | Y40Y | taC | taT | 8 | 8 | B.1.293 | 0.1 |
ORF7a | 40 | Y40Y | taC | taT | 8 | 8 | B.1.433 | 0.025559 |
ORF7a | 40 | Y40Y | taC | taT | 7 | 7 | AY.13 | 0.001127 |
ORF7a | 40 | Y40Y | taC | taT | 7 | 7 | AY.23.1 | 0.002922 |
ORF7a | 40 | Y40Y | taC | taT | 7 | 7 | AY.3.1 | 0.000597 |
ORF7a | 40 | Y40Y | taC | taT | 7 | 7 | AY.46.6 | 0.000505 |
ORF7a | 40 | Y40Y | taC | taT | 7 | 7 | AY.61 | 0.000733 |
ORF7a | 40 | Y40Y | taC | taT | 7 | 7 | B.1.177.10 | 0.006146 |
ORF7a | 40 | Y40Y | taC | taT | 7 | 7 | B.1.36.16 | 0.009972 |
ORF7a | 40 | Y40Y | taC | taT | 7 | 7 | C.37 | 0.000812 |
ORF7a | 40 | Y40Y | taC | taT | 6 | 6 | AY.120.2.1 | 0.00299 |
ORF7a | 40 | Y40Y | taC | taT | 6 | 6 | AY.85 | 0.002563 |
ORF7a | 40 | Y40Y | taC | taT | 6 | 6 | B.1.1.207 | 0.007092 |
ORF7a | 40 | Y40Y | taC | taT | 6 | 6 | B.1.452 | 0.082192 |
ORF7a | 40 | Y40Y | taC | taT | 6 | 6 | B.1.466.2 | 0.002347 |
ORF7a | 40 | Y40Y | taC | taT | 6 | 6 | B.1.517 | 0.002562 |
ORF7a | 40 | Y40Y | taC | taT | 6 | 6 | B.1.564.1 | 0.009464 |
ORF7a | 40 | Y40Y | taC | taT | 6 | 6 | B.1.582 | 0.002944 |
ORF7a | 40 | Y40Y | taC | taT | 6 | 6 | B.1.617.1 | 0.000774 |
ORF7a | 40 | Y40Y | taC | taT | 5 | 5 | A.2.5 | 0.002495 |
ORF7a | 40 | Y40Y | taC | taT | 5 | 5 | AY.113 | 0.000712 |
ORF7a | 40 | Y40Y | taC | taT | 5 | 5 | AY.14 | 0.00044 |
ORF7a | 40 | Y40Y | taC | taT | 5 | 5 | AY.32 | 0.002662 |
ORF7a | 40 | Y40Y | taC | taT | 5 | 5 | AY.34 | 0.000485 |
ORF7a | 40 | Y40Y | taC | taT | 5 | 5 | AY.40 | 0.004822 |
ORF7a | 40 | Y40Y | taC | taT | 5 | 5 | AY.54 | 0.000477 |
ORF7a | 40 | Y40Y | taC | taT | 5 | 5 | AY.55 | 0.004587 |
ORF7a | 40 | Y40Y | taC | taT | 5 | 5 | B.1.1.161 | 0.017668 |
ORF7a | 40 | Y40Y | taC | taT | 5 | 5 | B.1.1.189 | 0.007564 |
ORF7a | 40 | Y40Y | taC | taT | 5 | 5 | B.1.1.317 | 0.002058 |
ORF7a | 40 | Y40Y | taC | taT | 5 | 5 | B.1.232 | 0.002687 |
ORF7a | 40 | Y40Y | taC | taT | 5 | 5 | B.1.596 | 0.000436 |
ORF7a | 40 | Y40Y | taC | taT | 5 | 5 | P.1.14 | 0.000239 |
ORF7a | 40 | Y40Y | taC | taT | 5 | 5 | P.5 | 0.068493 |
ORF7a | 40 | Y40Y | taC | taT | 4 | 4 | AY.111 | 0.000733 |
ORF7a | 40 | Y40Y | taC | taT | 4 | 4 | AY.121 | 0.000541 |
ORF7a | 40 | Y40Y | taC | taT | 4 | 4 | AY.50 | 0.003197 |
ORF7a | 40 | Y40Y | taC | taT | 4 | 4 | AY.62 | 0.001743 |
ORF7a | 40 | Y40Y | taC | taT | 4 | 4 | AY.7.1 | 0.000451 |
ORF7a | 40 | Y40Y | taC | taT | 4 | 4 | AY.99.2 | 0.000369 |
ORF7a | 40 | Y40Y | taC | taT | 4 | 4 | B.1.1.214 | 0.000222 |
ORF7a | 40 | Y40Y | taC | taT | 4 | 4 | B.1.1.232 | 0.00726 |
ORF7a | 40 | Y40Y | taC | taT | 4 | 4 | B.1.1.431 | 0.064516 |
ORF7a | 40 | Y40Y | taC | taT | 4 | 4 | B.1.1.50 | 0.002716 |
ORF7a | 40 | Y40Y | taC | taT | 4 | 4 | B.1.1.70 | 0.001364 |
ORF7a | 40 | Y40Y | taC | taT | 4 | 4 | B.1.177.17 | 0.003284 |
ORF7a | 40 | Y40Y | taC | taT | 4 | 4 | B.1.258.3 | 0.0067 |
ORF7a | 40 | Y40Y | taC | taT | 4 | 4 | B.1.311 | 0.001098 |
ORF7a | 40 | Y40Y | taC | taT | 4 | 4 | B.1.369 | 0.001141 |
ORF7a | 40 | Y40Y | taC | taT | 4 | 4 | B.1.438.1 | 0.000429 |
ORF7a | 40 | Y40Y | taC | taT | 4 | 4 | B.1.600 | 0.023392 |
ORF7a | 40 | Y40Y | taC | taT | 4 | 4 | C.13 | 0.102564 |
ORF7a | 40 | Y40Y | taC | taT | 4 | 4 | Q.8 | 0.00066 |
ORF7a | 40 | Y40Y | taC | taT | 3 | 3 | A.2.5.2 | 0.004717 |
ORF7a | 40 | Y40Y | taC | taT | 3 | 3 | AY.107 | 0.001398 |
ORF7a | 40 | Y40Y | taC | taT | 3 | 3 | AY.108 | 0.003308 |
ORF7a | 40 | Y40Y | taC | taT | 3 | 3 | AY.5.3 | 0.001012 |
ORF7a | 40 | Y40Y | taC | taT | 3 | 3 | AY.6 | 0.000123 |
ORF7a | 40 | Y40Y | taC | taT | 3 | 3 | AY.66 | 0.003209 |
ORF7a | 40 | Y40Y | taC | taT | 3 | 3 | AY.98 | 0.000237 |
ORF7a | 40 | Y40Y | taC | taT | 3 | 3 | B.1.1.220 | 0.005576 |
ORF7a | 40 | Y40Y | taC | taT | 3 | 3 | B.1.1.222 | 0.000612 |
ORF7a | 40 | Y40Y | taC | taT | 3 | 3 | B.1.1.306 | 0.001315 |
ORF7a | 40 | Y40Y | taC | taT | 3 | 3 | B.1.177.56 | 0.002003 |
ORF7a | 40 | Y40Y | taC | taT | 3 | 3 | B.1.351.2 | 0.000908 |
ORF7a | 40 | Y40Y | taC | taT | 3 | 3 | B.1.36 | 0.000438 |
ORF7a | 40 | Y40Y | taC | taT | 3 | 3 | B.1.36.1 | 0.003421 |
ORF7a | 40 | Y40Y | taC | taT | 3 | 3 | B.1.416 | 0.003807 |
ORF7a | 40 | Y40Y | taC | taT | 3 | 3 | B.1.532 | 0.018634 |
ORF7a | 40 | Y40Y | taC | taT | 3 | 3 | B.1.619.1 | 0.001924 |
ORF7a | 40 | Y40Y | taC | taT | 3 | 3 | B.1.628 | 0.001057 |
ORF7a | 40 | Y40Y | taC | taT | 3 | 3 | P.1.12 | 0.001452 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | 0.111111 | |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | AD.2 | 0.000438 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | AY.1 | 0.000791 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | AY.105 | 0.001286 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | AY.19 | 0.002281 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | AY.4.4 | 0.000818 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | AY.4.5 | 0.000215 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | AY.51 | 0.001818 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | AY.84 | 0.000875 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | B | 0.000256 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | B.1.1.157 | 0.001826 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | B.1.1.280 | 0.006173 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | B.1.1.335 | 0.025974 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | B.1.1.467 | 0.038462 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | B.1.1.51 | 0.003436 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | B.1.1.61 | 0.017544 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | B.1.110 | 0.00905 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | B.1.147 | 0.001512 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | B.1.177.21 | 0.000153 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | B.1.177.33 | 0.003289 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | B.1.177.4 | 0.000422 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | B.1.177.58 | 0.002663 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | B.1.177.60 | 0.000437 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | B.1.177.80 | 0.003824 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | B.1.36.38 | 0.003284 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | B.1.375 | 0.001639 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | B.1.397 | 0.009709 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | B.1.474 | 0.003802 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | B.1.509 | 0.001732 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | B.1.560 | 0.009259 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | B.1.621.1 | 0.001012 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | P.1.15 | 0.000465 |
ORF7a | 40 | Y40Y | taC | taT | 2 | 2 | P.1.16 | 0.000748 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | A.2 | 0.000662 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | A.23 | 0.010526 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | A.29 | 0.005319 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | AD.1 | 0.004115 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | AY.106 | 0.000335 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | AY.24 | 0.000431 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | AY.36 | 0.000148 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | AY.46.4 | 0.000165 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | AY.5.1 | 0.003759 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | AY.58 | 0.000907 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | AY.67 | 0.000464 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | AY.68 | 0.000274 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | AY.70 | 0.000209 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | AY.76 | 0.004831 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | AY.79 | 0.001211 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | AY.9.1 | 0.000084 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | AY.95 | 0.000761 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | AY.96 | 0.002075 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | AY.99 | 0.001049 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | AZ.2 | 0.000821 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.1.152 | 0.04 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.1.190 | 0.05 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.1.194 | 0.00495 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.1.243 | 0.004082 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.1.269 | 0.001353 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.1.272 | 0.005208 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.1.344 | 0.010753 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.1.371 | 0.010417 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.1.375 | 0.011905 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.1.397 | 0.002252 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.1.412 | 0.007634 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.1.419 | 0.007407 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.1.429 | 0.004608 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.1.462 | 0.008621 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.1.486 | 0.001577 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.1.500 | 0.02 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.1.52 | 0.012195 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.1.528 | 0.004808 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.1.83 | 0.00271 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.1.98 | 0.018519 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.1.99 | 0.02381 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.111 | 0.001175 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.126 | 0.001276 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.139 | 0.000733 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.160.28 | 0.002924 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.160.32 | 0.004292 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.177.20 | 0.001517 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.177.63 | 0.002703 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.177.84 | 0.006667 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.222 | 0.001692 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.234 | 0.000132 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.239 | 0.001221 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.258.10 | 0.011364 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.313 | 0.006579 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.320 | 0.001245 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.346 | 0.001311 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.349 | 0.000715 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.389 | 0.001002 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.404 | 0.001302 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.408 | 0.00369 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.409 | 0.000781 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.411 | 0.003704 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.422 | 0.000812 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.453 | 0.003236 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.456 | 0.003268 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.508 | 0.025641 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.526 | 0.000024 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.546 | 0.003704 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.551 | 0.00129 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.561 | 0.000397 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.575.2 | 0.004808 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.577 | 0.000687 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.595 | 0.000261 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.597 | 0.00463 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.610 | 0.003546 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.627 | 0.00202 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.1.634 | 0.003425 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.12 | 0.00641 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.3 | 0.000831 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.31 | 0.003731 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.40 | 0.000364 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | B.55 | 0.00295 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | C.5 | 0.090909 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | N.4 | 0.004255 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | N.5 | 0.001767 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | P.1.17 | 0.000162 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | P.3 | 0.001595 |
ORF7a | 40 | Y40Y | taC | taT | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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