CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 40 & Codon = taT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF7a	40	Y40Y		syn	taC	taT	21751	21751	1	27511-27513

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF7a	40	Y40Y	taC	taT	21751	21751	All	0.00416
ORF7a	40	Y40Y	taC	taT	10374	10374	B.1.1.7	0.009287
ORF7a	40	Y40Y	taC	taT	2792	2792	AY.4	0.004346
ORF7a	40	Y40Y	taC	taT	1274	1274	B.1.429	0.029976
ORF7a	40	Y40Y	taC	taT	562	562	C.30	0.970639
ORF7a	40	Y40Y	taC	taT	423	423	AY.103	0.002626
ORF7a	40	Y40Y	taC	taT	422	422	B.1.617.2	0.001589
ORF7a	40	Y40Y	taC	taT	387	387	B.1.177.16	0.257143
ORF7a	40	Y40Y	taC	taT	378	378	AY.25	0.002274
ORF7a	40	Y40Y	taC	taT	364	364	B.1.1.1	0.118915
ORF7a	40	Y40Y	taC	taT	332	332	AY.43	0.001471
ORF7a	40	Y40Y	taC	taT	295	295	B.1.1.434	0.102823
ORF7a	40	Y40Y	taC	taT	289	289	B.1.2	0.002545
ORF7a	40	Y40Y	taC	taT	259	259	B.1.1.39	0.132008
ORF7a	40	Y40Y	taC	taT	250	250	AY.74	0.028912
ORF7a	40	Y40Y	taC	taT	198	198	B.1	0.001814
ORF7a	40	Y40Y	taC	taT	167	167	AY.44	0.001016
ORF7a	40	Y40Y	taC	taT	147	147	C.30.1	0.986577
ORF7a	40	Y40Y	taC	taT	139	139	B.1.177.82	0.066348
ORF7a	40	Y40Y	taC	taT	124	124	AY.3	0.001233
ORF7a	40	Y40Y	taC	taT	115	115	AY.102	0.003049
ORF7a	40	Y40Y	taC	taT	114	114	Q.1	0.014401
ORF7a	40	Y40Y	taC	taT	91	91	B.1.1.519	0.003614
ORF7a	40	Y40Y	taC	taT	85	85	AY.120	0.00316
ORF7a	40	Y40Y	taC	taT	84	84	B.1.1	0.001524
ORF7a	40	Y40Y	taC	taT	81	81	P.1	0.001276
ORF7a	40	Y40Y	taC	taT	71	71	B.1.177	0.000935
ORF7a	40	Y40Y	taC	taT	67	67	AY.26	0.001897
ORF7a	40	Y40Y	taC	taT	61	61	AY.4.2	0.001323
ORF7a	40	Y40Y	taC	taT	57	57	AY.119	0.002013
ORF7a	40	Y40Y	taC	taT	56	56	P.1.13	0.050314
ORF7a	40	Y40Y	taC	taT	53	53	AY.29	0.000836
ORF7a	40	Y40Y	taC	taT	47	47	B.1.243	0.00327
ORF7a	40	Y40Y	taC	taT	46	46	B.1.160	0.001435
ORF7a	40	Y40Y	taC	taT	41	41	B.1.258.22	0.109333
ORF7a	40	Y40Y	taC	taT	40	40	B.1.1.318	0.01207
ORF7a	40	Y40Y	taC	taT	37	37	AY.100	0.001702
ORF7a	40	Y40Y	taC	taT	36	36	AY.114	0.00832
ORF7a	40	Y40Y	taC	taT	32	32	AY.117	0.002705
ORF7a	40	Y40Y	taC	taT	32	32	AY.118	0.002005
ORF7a	40	Y40Y	taC	taT	32	32	B.1.221	0.002273
ORF7a	40	Y40Y	taC	taT	32	32	B.1.351	0.000951
ORF7a	40	Y40Y	taC	taT	31	31	B.1.110.3	0.02227
ORF7a	40	Y40Y	taC	taT	29	29	AY.27	0.001877
ORF7a	40	Y40Y	taC	taT	29	29	AY.42	0.001167
ORF7a	40	Y40Y	taC	taT	29	29	B.1.177.57	0.008148
ORF7a	40	Y40Y	taC	taT	28	28	B.1.575	0.008495
ORF7a	40	Y40Y	taC	taT	27	27	AY.30	0.010685
ORF7a	40	Y40Y	taC	taT	27	27	B.1.258.17	0.002807
ORF7a	40	Y40Y	taC	taT	26	26	AF.1	0.962963
ORF7a	40	Y40Y	taC	taT	26	26	B.1.637	0.0019
ORF7a	40	Y40Y	taC	taT	26	26	D.2	0.001951
ORF7a	40	Y40Y	taC	taT	25	25	B.1.621	0.002213
ORF7a	40	Y40Y	taC	taT	24	24	AY.11	0.032129
ORF7a	40	Y40Y	taC	taT	24	24	R.1	0.00216
ORF7a	40	Y40Y	taC	taT	23	23	AY.39	0.000568
ORF7a	40	Y40Y	taC	taT	23	23	B.1.427	0.001161
ORF7a	40	Y40Y	taC	taT	22	22	AY.23	0.001534
ORF7a	40	Y40Y	taC	taT	22	22	B.1.576	0.019946
ORF7a	40	Y40Y	taC	taT	20	20	AY.5	0.000413
ORF7a	40	Y40Y	taC	taT	20	20	AY.98.1	0.000969
ORF7a	40	Y40Y	taC	taT	17	17	AY.20	0.000661
ORF7a	40	Y40Y	taC	taT	17	17	AY.75	0.000952
ORF7a	40	Y40Y	taC	taT	17	17	B.1.240	0.003665
ORF7a	40	Y40Y	taC	taT	16	16	AY.33	0.001068
ORF7a	40	Y40Y	taC	taT	16	16	AY.45	0.001947
ORF7a	40	Y40Y	taC	taT	16	16	B.1.1.372	0.011019
ORF7a	40	Y40Y	taC	taT	13	13	AY.39.1	0.000515
ORF7a	40	Y40Y	taC	taT	13	13	AY.91	0.009496
ORF7a	40	Y40Y	taC	taT	12	12	AY.9.2	0.000441
ORF7a	40	Y40Y	taC	taT	12	12	B.1.1.28	0.003735
ORF7a	40	Y40Y	taC	taT	11	11	AY.47	0.000342
ORF7a	40	Y40Y	taC	taT	11	11	AY.9	0.000744
ORF7a	40	Y40Y	taC	taT	11	11	B.1.1.258	0.035831
ORF7a	40	Y40Y	taC	taT	10	10	AE.8	0.00489
ORF7a	40	Y40Y	taC	taT	10	10	AY.46	0.001041
ORF7a	40	Y40Y	taC	taT	10	10	B.1.1.168	0.263158
ORF7a	40	Y40Y	taC	taT	10	10	B.1.400	0.00429
ORF7a	40	Y40Y	taC	taT	9	9	AY.75.1	0.001623
ORF7a	40	Y40Y	taC	taT	9	9	B.1.1.25	0.005117
ORF7a	40	Y40Y	taC	taT	9	9	B.1.258	0.000599
ORF7a	40	Y40Y	taC	taT	9	9	P.1.1	0.002859
ORF7a	40	Y40Y	taC	taT	9	9	P.2	0.00168
ORF7a	40	Y40Y	taC	taT	8	8	AY.116	0.002294
ORF7a	40	Y40Y	taC	taT	8	8	AY.35	0.001864
ORF7a	40	Y40Y	taC	taT	8	8	B.1.293	0.1
ORF7a	40	Y40Y	taC	taT	8	8	B.1.433	0.025559
ORF7a	40	Y40Y	taC	taT	7	7	AY.13	0.001127
ORF7a	40	Y40Y	taC	taT	7	7	AY.23.1	0.002922
ORF7a	40	Y40Y	taC	taT	7	7	AY.3.1	0.000597
ORF7a	40	Y40Y	taC	taT	7	7	AY.46.6	0.000505
ORF7a	40	Y40Y	taC	taT	7	7	AY.61	0.000733
ORF7a	40	Y40Y	taC	taT	7	7	B.1.177.10	0.006146
ORF7a	40	Y40Y	taC	taT	7	7	B.1.36.16	0.009972
ORF7a	40	Y40Y	taC	taT	7	7	C.37	0.000812
ORF7a	40	Y40Y	taC	taT	6	6	AY.120.2.1	0.00299
ORF7a	40	Y40Y	taC	taT	6	6	AY.85	0.002563
ORF7a	40	Y40Y	taC	taT	6	6	B.1.1.207	0.007092
ORF7a	40	Y40Y	taC	taT	6	6	B.1.452	0.082192
ORF7a	40	Y40Y	taC	taT	6	6	B.1.466.2	0.002347
ORF7a	40	Y40Y	taC	taT	6	6	B.1.517	0.002562
ORF7a	40	Y40Y	taC	taT	6	6	B.1.564.1	0.009464
ORF7a	40	Y40Y	taC	taT	6	6	B.1.582	0.002944
ORF7a	40	Y40Y	taC	taT	6	6	B.1.617.1	0.000774
ORF7a	40	Y40Y	taC	taT	5	5	A.2.5	0.002495
ORF7a	40	Y40Y	taC	taT	5	5	AY.113	0.000712
ORF7a	40	Y40Y	taC	taT	5	5	AY.14	0.00044
ORF7a	40	Y40Y	taC	taT	5	5	AY.32	0.002662
ORF7a	40	Y40Y	taC	taT	5	5	AY.34	0.000485
ORF7a	40	Y40Y	taC	taT	5	5	AY.40	0.004822
ORF7a	40	Y40Y	taC	taT	5	5	AY.54	0.000477
ORF7a	40	Y40Y	taC	taT	5	5	AY.55	0.004587
ORF7a	40	Y40Y	taC	taT	5	5	B.1.1.161	0.017668
ORF7a	40	Y40Y	taC	taT	5	5	B.1.1.189	0.007564
ORF7a	40	Y40Y	taC	taT	5	5	B.1.1.317	0.002058
ORF7a	40	Y40Y	taC	taT	5	5	B.1.232	0.002687
ORF7a	40	Y40Y	taC	taT	5	5	B.1.596	0.000436
ORF7a	40	Y40Y	taC	taT	5	5	P.1.14	0.000239
ORF7a	40	Y40Y	taC	taT	5	5	P.5	0.068493
ORF7a	40	Y40Y	taC	taT	4	4	AY.111	0.000733
ORF7a	40	Y40Y	taC	taT	4	4	AY.121	0.000541
ORF7a	40	Y40Y	taC	taT	4	4	AY.50	0.003197
ORF7a	40	Y40Y	taC	taT	4	4	AY.62	0.001743
ORF7a	40	Y40Y	taC	taT	4	4	AY.7.1	0.000451
ORF7a	40	Y40Y	taC	taT	4	4	AY.99.2	0.000369
ORF7a	40	Y40Y	taC	taT	4	4	B.1.1.214	0.000222
ORF7a	40	Y40Y	taC	taT	4	4	B.1.1.232	0.00726
ORF7a	40	Y40Y	taC	taT	4	4	B.1.1.431	0.064516
ORF7a	40	Y40Y	taC	taT	4	4	B.1.1.50	0.002716
ORF7a	40	Y40Y	taC	taT	4	4	B.1.1.70	0.001364
ORF7a	40	Y40Y	taC	taT	4	4	B.1.177.17	0.003284
ORF7a	40	Y40Y	taC	taT	4	4	B.1.258.3	0.0067
ORF7a	40	Y40Y	taC	taT	4	4	B.1.311	0.001098
ORF7a	40	Y40Y	taC	taT	4	4	B.1.369	0.001141
ORF7a	40	Y40Y	taC	taT	4	4	B.1.438.1	0.000429
ORF7a	40	Y40Y	taC	taT	4	4	B.1.600	0.023392
ORF7a	40	Y40Y	taC	taT	4	4	C.13	0.102564
ORF7a	40	Y40Y	taC	taT	4	4	Q.8	0.00066
ORF7a	40	Y40Y	taC	taT	3	3	A.2.5.2	0.004717
ORF7a	40	Y40Y	taC	taT	3	3	AY.107	0.001398
ORF7a	40	Y40Y	taC	taT	3	3	AY.108	0.003308
ORF7a	40	Y40Y	taC	taT	3	3	AY.5.3	0.001012
ORF7a	40	Y40Y	taC	taT	3	3	AY.6	0.000123
ORF7a	40	Y40Y	taC	taT	3	3	AY.66	0.003209
ORF7a	40	Y40Y	taC	taT	3	3	AY.98	0.000237
ORF7a	40	Y40Y	taC	taT	3	3	B.1.1.220	0.005576
ORF7a	40	Y40Y	taC	taT	3	3	B.1.1.222	0.000612
ORF7a	40	Y40Y	taC	taT	3	3	B.1.1.306	0.001315
ORF7a	40	Y40Y	taC	taT	3	3	B.1.177.56	0.002003
ORF7a	40	Y40Y	taC	taT	3	3	B.1.351.2	0.000908
ORF7a	40	Y40Y	taC	taT	3	3	B.1.36	0.000438
ORF7a	40	Y40Y	taC	taT	3	3	B.1.36.1	0.003421
ORF7a	40	Y40Y	taC	taT	3	3	B.1.416	0.003807
ORF7a	40	Y40Y	taC	taT	3	3	B.1.532	0.018634
ORF7a	40	Y40Y	taC	taT	3	3	B.1.619.1	0.001924
ORF7a	40	Y40Y	taC	taT	3	3	B.1.628	0.001057
ORF7a	40	Y40Y	taC	taT	3	3	P.1.12	0.001452
ORF7a	40	Y40Y	taC	taT	2	2		0.111111
ORF7a	40	Y40Y	taC	taT	2	2	AD.2	0.000438
ORF7a	40	Y40Y	taC	taT	2	2	AY.1	0.000791
ORF7a	40	Y40Y	taC	taT	2	2	AY.105	0.001286
ORF7a	40	Y40Y	taC	taT	2	2	AY.19	0.002281
ORF7a	40	Y40Y	taC	taT	2	2	AY.4.4	0.000818
ORF7a	40	Y40Y	taC	taT	2	2	AY.4.5	0.000215
ORF7a	40	Y40Y	taC	taT	2	2	AY.51	0.001818
ORF7a	40	Y40Y	taC	taT	2	2	AY.84	0.000875
ORF7a	40	Y40Y	taC	taT	2	2	B	0.000256
ORF7a	40	Y40Y	taC	taT	2	2	B.1.1.157	0.001826
ORF7a	40	Y40Y	taC	taT	2	2	B.1.1.280	0.006173
ORF7a	40	Y40Y	taC	taT	2	2	B.1.1.335	0.025974
ORF7a	40	Y40Y	taC	taT	2	2	B.1.1.467	0.038462
ORF7a	40	Y40Y	taC	taT	2	2	B.1.1.51	0.003436
ORF7a	40	Y40Y	taC	taT	2	2	B.1.1.61	0.017544
ORF7a	40	Y40Y	taC	taT	2	2	B.1.110	0.00905
ORF7a	40	Y40Y	taC	taT	2	2	B.1.147	0.001512
ORF7a	40	Y40Y	taC	taT	2	2	B.1.177.21	0.000153
ORF7a	40	Y40Y	taC	taT	2	2	B.1.177.33	0.003289
ORF7a	40	Y40Y	taC	taT	2	2	B.1.177.4	0.000422
ORF7a	40	Y40Y	taC	taT	2	2	B.1.177.58	0.002663
ORF7a	40	Y40Y	taC	taT	2	2	B.1.177.60	0.000437
ORF7a	40	Y40Y	taC	taT	2	2	B.1.177.80	0.003824
ORF7a	40	Y40Y	taC	taT	2	2	B.1.36.38	0.003284
ORF7a	40	Y40Y	taC	taT	2	2	B.1.375	0.001639
ORF7a	40	Y40Y	taC	taT	2	2	B.1.397	0.009709
ORF7a	40	Y40Y	taC	taT	2	2	B.1.474	0.003802
ORF7a	40	Y40Y	taC	taT	2	2	B.1.509	0.001732
ORF7a	40	Y40Y	taC	taT	2	2	B.1.560	0.009259
ORF7a	40	Y40Y	taC	taT	2	2	B.1.621.1	0.001012
ORF7a	40	Y40Y	taC	taT	2	2	P.1.15	0.000465
ORF7a	40	Y40Y	taC	taT	2	2	P.1.16	0.000748
ORF7a	40	Y40Y	taC	taT	1	1	A.2	0.000662
ORF7a	40	Y40Y	taC	taT	1	1	A.23	0.010526
ORF7a	40	Y40Y	taC	taT	1	1	A.29	0.005319
ORF7a	40	Y40Y	taC	taT	1	1	AD.1	0.004115
ORF7a	40	Y40Y	taC	taT	1	1	AY.106	0.000335
ORF7a	40	Y40Y	taC	taT	1	1	AY.24	0.000431
ORF7a	40	Y40Y	taC	taT	1	1	AY.36	0.000148
ORF7a	40	Y40Y	taC	taT	1	1	AY.4.2.1	0.000149
ORF7a	40	Y40Y	taC	taT	1	1	AY.46.4	0.000165
ORF7a	40	Y40Y	taC	taT	1	1	AY.5.1	0.003759
ORF7a	40	Y40Y	taC	taT	1	1	AY.58	0.000907
ORF7a	40	Y40Y	taC	taT	1	1	AY.67	0.000464
ORF7a	40	Y40Y	taC	taT	1	1	AY.68	0.000274
ORF7a	40	Y40Y	taC	taT	1	1	AY.70	0.000209
ORF7a	40	Y40Y	taC	taT	1	1	AY.76	0.004831
ORF7a	40	Y40Y	taC	taT	1	1	AY.79	0.001211
ORF7a	40	Y40Y	taC	taT	1	1	AY.9.1	0.000084
ORF7a	40	Y40Y	taC	taT	1	1	AY.95	0.000761
ORF7a	40	Y40Y	taC	taT	1	1	AY.96	0.002075
ORF7a	40	Y40Y	taC	taT	1	1	AY.99	0.001049
ORF7a	40	Y40Y	taC	taT	1	1	AZ.2	0.000821
ORF7a	40	Y40Y	taC	taT	1	1	B.1.1.152	0.04
ORF7a	40	Y40Y	taC	taT	1	1	B.1.1.190	0.05
ORF7a	40	Y40Y	taC	taT	1	1	B.1.1.194	0.00495
ORF7a	40	Y40Y	taC	taT	1	1	B.1.1.216	0.00089
ORF7a	40	Y40Y	taC	taT	1	1	B.1.1.243	0.004082
ORF7a	40	Y40Y	taC	taT	1	1	B.1.1.269	0.001353
ORF7a	40	Y40Y	taC	taT	1	1	B.1.1.272	0.005208
ORF7a	40	Y40Y	taC	taT	1	1	B.1.1.311	0.000358
ORF7a	40	Y40Y	taC	taT	1	1	B.1.1.316	0.000925
ORF7a	40	Y40Y	taC	taT	1	1	B.1.1.344	0.010753
ORF7a	40	Y40Y	taC	taT	1	1	B.1.1.371	0.010417
ORF7a	40	Y40Y	taC	taT	1	1	B.1.1.375	0.011905
ORF7a	40	Y40Y	taC	taT	1	1	B.1.1.397	0.002252
ORF7a	40	Y40Y	taC	taT	1	1	B.1.1.409	0.002833
ORF7a	40	Y40Y	taC	taT	1	1	B.1.1.412	0.007634
ORF7a	40	Y40Y	taC	taT	1	1	B.1.1.419	0.007407
ORF7a	40	Y40Y	taC	taT	1	1	B.1.1.420	0.001006
ORF7a	40	Y40Y	taC	taT	1	1	B.1.1.429	0.004608
ORF7a	40	Y40Y	taC	taT	1	1	B.1.1.462	0.008621
ORF7a	40	Y40Y	taC	taT	1	1	B.1.1.486	0.001577
ORF7a	40	Y40Y	taC	taT	1	1	B.1.1.500	0.02
ORF7a	40	Y40Y	taC	taT	1	1	B.1.1.52	0.012195
ORF7a	40	Y40Y	taC	taT	1	1	B.1.1.528	0.004808
ORF7a	40	Y40Y	taC	taT	1	1	B.1.1.63	0.000386
ORF7a	40	Y40Y	taC	taT	1	1	B.1.1.83	0.00271
ORF7a	40	Y40Y	taC	taT	1	1	B.1.1.98	0.018519
ORF7a	40	Y40Y	taC	taT	1	1	B.1.1.99	0.02381
ORF7a	40	Y40Y	taC	taT	1	1	B.1.111	0.001175
ORF7a	40	Y40Y	taC	taT	1	1	B.1.126	0.001276
ORF7a	40	Y40Y	taC	taT	1	1	B.1.139	0.000733
ORF7a	40	Y40Y	taC	taT	1	1	B.1.160.28	0.002924
ORF7a	40	Y40Y	taC	taT	1	1	B.1.160.32	0.004292
ORF7a	40	Y40Y	taC	taT	1	1	B.1.177.12	0.000152
ORF7a	40	Y40Y	taC	taT	1	1	B.1.177.20	0.001517
ORF7a	40	Y40Y	taC	taT	1	1	B.1.177.44	0.000519
ORF7a	40	Y40Y	taC	taT	1	1	B.1.177.63	0.002703
ORF7a	40	Y40Y	taC	taT	1	1	B.1.177.7	0.000165
ORF7a	40	Y40Y	taC	taT	1	1	B.1.177.73	0.000566
ORF7a	40	Y40Y	taC	taT	1	1	B.1.177.84	0.006667
ORF7a	40	Y40Y	taC	taT	1	1	B.1.222	0.001692
ORF7a	40	Y40Y	taC	taT	1	1	B.1.234	0.000132
ORF7a	40	Y40Y	taC	taT	1	1	B.1.239	0.001221
ORF7a	40	Y40Y	taC	taT	1	1	B.1.258.10	0.011364
ORF7a	40	Y40Y	taC	taT	1	1	B.1.313	0.006579
ORF7a	40	Y40Y	taC	taT	1	1	B.1.320	0.001245
ORF7a	40	Y40Y	taC	taT	1	1	B.1.346	0.001311
ORF7a	40	Y40Y	taC	taT	1	1	B.1.349	0.000715
ORF7a	40	Y40Y	taC	taT	1	1	B.1.36.22	0.001208
ORF7a	40	Y40Y	taC	taT	1	1	B.1.36.29	0.000517
ORF7a	40	Y40Y	taC	taT	1	1	B.1.389	0.001002
ORF7a	40	Y40Y	taC	taT	1	1	B.1.404	0.001302
ORF7a	40	Y40Y	taC	taT	1	1	B.1.408	0.00369
ORF7a	40	Y40Y	taC	taT	1	1	B.1.409	0.000781
ORF7a	40	Y40Y	taC	taT	1	1	B.1.411	0.003704
ORF7a	40	Y40Y	taC	taT	1	1	B.1.422	0.000812
ORF7a	40	Y40Y	taC	taT	1	1	B.1.453	0.003236
ORF7a	40	Y40Y	taC	taT	1	1	B.1.456	0.003268
ORF7a	40	Y40Y	taC	taT	1	1	B.1.508	0.025641
ORF7a	40	Y40Y	taC	taT	1	1	B.1.526	0.000024
ORF7a	40	Y40Y	taC	taT	1	1	B.1.546	0.003704
ORF7a	40	Y40Y	taC	taT	1	1	B.1.551	0.00129
ORF7a	40	Y40Y	taC	taT	1	1	B.1.561	0.000397
ORF7a	40	Y40Y	taC	taT	1	1	B.1.575.2	0.004808
ORF7a	40	Y40Y	taC	taT	1	1	B.1.577	0.000687
ORF7a	40	Y40Y	taC	taT	1	1	B.1.595	0.000261
ORF7a	40	Y40Y	taC	taT	1	1	B.1.597	0.00463
ORF7a	40	Y40Y	taC	taT	1	1	B.1.610	0.003546
ORF7a	40	Y40Y	taC	taT	1	1	B.1.627	0.00202
ORF7a	40	Y40Y	taC	taT	1	1	B.1.634	0.003425
ORF7a	40	Y40Y	taC	taT	1	1	B.12	0.00641
ORF7a	40	Y40Y	taC	taT	1	1	B.3	0.000831
ORF7a	40	Y40Y	taC	taT	1	1	B.31	0.003731
ORF7a	40	Y40Y	taC	taT	1	1	B.40	0.000364
ORF7a	40	Y40Y	taC	taT	1	1	B.55	0.00295
ORF7a	40	Y40Y	taC	taT	1	1	C.5	0.090909
ORF7a	40	Y40Y	taC	taT	1	1	N.4	0.004255
ORF7a	40	Y40Y	taC	taT	1	1	N.5	0.001767
ORF7a	40	Y40Y	taC	taT	1	1	P.1.17	0.000162
ORF7a	40	Y40Y	taC	taT	1	1	P.3	0.001595
ORF7a	40	Y40Y	taC	taT	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.