CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 38

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF7a	38	G38G		syn	ggA	ggC	165729	165109	0.996259	27505-27507
ORF7a	38	G38G		syn	ggA	ggG	165729	492	0.0029687	27505-27507
ORF7a	38	G38G		syn	ggA	ggT	165729	128	0.000772345	27505-27507
ORF7a	38	G38V		nonsyn	gGa	gTa	9003	8990	0.998556	27505-27507
ORF7a	38	G38V		nonsyn	gGA	gTC	9003	12	0.00133289	27505-27507
ORF7a	38	G38V		nonsyn	gGA	gTT	9003	1	0.000111074	27505-27507
ORF7a	38	G38R		nonsyn	Gga	Cga	5030	4668	0.928032	27505-27507
ORF7a	38	G38R		nonsyn	Gga	Aga	5030	362	0.0719682	27505-27507
ORF7a	38	G38X		nonsyn	Gga	Tga	4130	4130	1	27505-27507
ORF7a	38	G38del		del	GGA	---	1723	1723	1	27505-27507
ORF7a	38	G38A		nonsyn	gGa	gCa	835	835	1	27505-27507
ORF7a	38	G38E		nonsyn	gGa	gAa	742	742	1	27505-27507
ORF7a	38	G38del2		del	gGA	g--	186	141	0.758065	27505-27507
ORF7a	38	G38del2		del	GGa	--a	186	45	0.241935	27505-27507
ORF7a	38	G38del1		del	ggA	gg-	139	121	0.870504	27505-27507
ORF7a	38	G38del1		del	Gga	-ga	139	9	0.0647482	27505-27507
ORF7a	38	G38del1		del	GGa	-Aa	139	4	0.028777	27505-27507
ORF7a	38	G38del1		del	GGa	-Na	139	2	0.0143885	27505-27507
ORF7a	38	G38del1		del	GgA	-gN	139	1	0.00719424	27505-27507
ORF7a	38	G38del1		del	GGA	-NN	139	1	0.00719424	27505-27507
ORF7a	38	G38del1		del	GgA	-gC	139	1	0.00719424	27505-27507
ORF7a	38	G38P		nonsyn	GGa	CCa	27	27	1	27505-27507
ORF7a	38	G38C		nonsyn	GgA	TgC	11	11	1	27505-27507
ORF7a	38	G38L		nonsyn	GGa	TTa	10	8	0.8	27505-27507
ORF7a	38	G38L		nonsyn	GGa	CTa	10	2	0.2	27505-27507
ORF7a	38	G38D		nonsyn	gGA	gAC	4	3	0.75	27505-27507
ORF7a	38	G38S		nonsyn	GgA	AgC	4	3	0.75	27505-27507
ORF7a	38	G38S		nonsyn	GGa	TCa	4	1	0.25	27505-27507
ORF7a	38	G38D		nonsyn	gGA	gAT	4	1	0.25	27505-27507
ORF7a	38	G38K		nonsyn	GGa	AAa	2	2	1	27505-27507
ORF7a	38	G38I		nonsyn	GGa	ATa	1	1	1	27505-27507

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF7a	38	G38G	ggA	ggC	165109	165729	All	0.031579
ORF7a	38	G38G	ggA	ggG	492	165729	All	0.000094
ORF7a	38	G38G	ggA	ggT	128	165729	All	0.000024
ORF7a	38	G38G	ggA	ggC	161937	162000	AY.25	0.974022
ORF7a	38	G38G	ggA	ggT	59	162000	AY.25	0.000355
ORF7a	38	G38G	ggA	ggG	4	162000	AY.25	0.000024
ORF7a	38	G38V	gGa	gTa	8990	9003	All	0.001719
ORF7a	38	G38V	gGA	gTC	12	9003	All	0.000002
ORF7a	38	G38V	gGA	gTT	1	9003	All	0
ORF7a	38	G38R	Gga	Cga	4668	5030	All	0.000893
ORF7a	38	G38R	Gga	Aga	362	5030	All	0.000069
ORF7a	38	G38X	Gga	Tga	4130	4130	All	0.00079
ORF7a	38	G38R	Gga	Cga	3095	3208	B.1.1.7	0.002771
ORF7a	38	G38R	Gga	Aga	113	3208	B.1.1.7	0.000101
ORF7a	38	G38V	gGa	gTa	2868	2868	B.1.1.7	0.002567
ORF7a	38	G38X	Gga	Tga	2270	2270	AY.4	0.003533
ORF7a	38	G38del	GGA	---	1723	1723	All	0.00033
ORF7a	38	G38V	gGa	gTa	1230	1230	AY.4	0.001914
ORF7a	38	G38V	gGa	gTa	1066	1066	AY.26	0.030179
ORF7a	38	G38A	gGa	gCa	835	835	All	0.00016
ORF7a	38	G38G	ggA	ggC	769	776	B.1.617.2	0.002896
ORF7a	38	G38G	ggA	ggT	4	776	B.1.617.2	0.000015
ORF7a	38	G38G	ggA	ggG	3	776	B.1.617.2	0.000011
ORF7a	38	G38R	Gga	Cga	745	746	AY.26	0.021091
ORF7a	38	G38R	Gga	Aga	1	746	AY.26	0.000028
ORF7a	38	G38E	gGa	gAa	742	742	All	0.000142
ORF7a	38	G38V	gGa	gTa	558	558	B.1.617.2	0.002101
ORF7a	38	G38V	gGa	gTa	538	538	AY.43	0.002384
ORF7a	38	G38del	GGA	---	350	350	AY.4	0.000545
ORF7a	38	G38G	ggA	ggC	326	329	AY.39	0.008056
ORF7a	38	G38G	ggA	ggT	2	329	AY.39	0.000049
ORF7a	38	G38G	ggA	ggG	1	329	AY.39	0.000025
ORF7a	38	G38R	Gga	Cga	312	312	AY.29.1	0.068798
ORF7a	38	G38del	GGA	---	308	308	B.1.1.7	0.000276
ORF7a	38	G38V	gGa	gTa	277	277	AY.103	0.00172
ORF7a	38	G38X	Gga	Tga	270	270	AY.43	0.001196
ORF7a	38	G38X	Gga	Tga	269	269	B.1.617.2	0.001013
ORF7a	38	G38E	gGa	gAa	244	244	B.1.1.7	0.000218
ORF7a	38	G38X	Gga	Tga	237	237	B.1.1.7	0.000212
ORF7a	38	G38G	ggA	ggC	236	236	AY.113	0.033604
ORF7a	38	G38G	ggA	ggG	234	234	B.1.525	0.02648
ORF7a	38	G38R	Gga	Cga	187	230	AY.4	0.000291
ORF7a	38	G38R	Gga	Aga	43	230	AY.4	0.000067
ORF7a	38	G38G	ggA	ggC	222	228	AY.44	0.001351
ORF7a	38	G38G	ggA	ggT	3	228	AY.44	0.000018
ORF7a	38	G38G	ggA	ggG	3	228	AY.44	0.000018
ORF7a	38	G38V	gGa	gTa	203	203	AY.46	0.021128
ORF7a	38	G38del	GGA	---	198	198	B.1.617.2	0.000746
ORF7a	38	G38del2	gGA	g--	141	186	All	0.000027
ORF7a	38	G38del2	GGa	--a	45	186	All	0.000009
ORF7a	38	G38G	ggA	ggC	147	183	AY.4	0.000229
ORF7a	38	G38G	ggA	ggT	19	183	AY.4	0.00003
ORF7a	38	G38G	ggA	ggG	17	183	AY.4	0.000026
ORF7a	38	G38del	GGA	---	179	179	B.1.177.21	0.013688
ORF7a	38	G38G	ggA	ggC	143	145	AY.43	0.000634
ORF7a	38	G38G	ggA	ggT	1	145	AY.43	0.000004
ORF7a	38	G38G	ggA	ggG	1	145	AY.43	0.000004
ORF7a	38	G38E	gGa	gAa	142	142	AY.4	0.000221
ORF7a	38	G38del1	ggA	gg-	121	139	All	0.000023
ORF7a	38	G38del1	Gga	-ga	9	139	All	0.000002
ORF7a	38	G38del1	GGa	-Aa	4	139	All	0.000001
ORF7a	38	G38del1	GGa	-Na	2	139	All	0
ORF7a	38	G38del1	GgA	-gN	1	139	All	0
ORF7a	38	G38del1	GGA	-NN	1	139	All	0
ORF7a	38	G38del1	GgA	-gC	1	139	All	0
ORF7a	38	G38G	ggA	ggG	65	138	B.1.1.7	0.000058
ORF7a	38	G38G	ggA	ggC	55	138	B.1.1.7	0.000049
ORF7a	38	G38G	ggA	ggT	18	138	B.1.1.7	0.000016
ORF7a	38	G38E	gGa	gAa	134	134	AY.44	0.000816
ORF7a	38	G38A	gGa	gCa	129	129	AY.39.1	0.00511
ORF7a	38	G38del	GGA	---	125	125	AY.25	0.000752
ORF7a	38	G38V	gGa	gTa	116	116	AY.3	0.001154
ORF7a	38	G38A	gGa	gCa	113	113	B.1.1.7	0.000101
ORF7a	38	G38R	Gga	Cga	93	103	B.1.617.2	0.00035
ORF7a	38	G38R	Gga	Aga	10	103	B.1.617.2	0.000038
ORF7a	38	G38V	gGa	gTa	102	102	B.1.2	0.000898
ORF7a	38	G38G	ggA	ggC	100	100	AY.92	0.028727
ORF7a	38	G38X	Gga	Tga	98	98	AY.92	0.028153
ORF7a	38	G38G	ggA	ggC	93	95	AY.75	0.00521
ORF7a	38	G38G	ggA	ggT	2	95	AY.75	0.000112
ORF7a	38	G38G	ggA	ggC	79	92	AY.103	0.000491
ORF7a	38	G38G	ggA	ggG	12	92	AY.103	0.000075
ORF7a	38	G38G	ggA	ggT	1	92	AY.103	0.000006
ORF7a	38	G38A	gGa	gCa	89	89	B.1.438.1	0.009546
ORF7a	38	G38V	gGa	gTa	84	84	B.1	0.000769
ORF7a	38	G38V	gGa	gTa	82	82	AY.44	0.000499
ORF7a	38	G38G	ggA	ggC	80	80	AY.120	0.002974
ORF7a	38	G38V	gGa	gTa	80	80	P.1	0.00126
ORF7a	38	G38A	gGa	gCa	77	77	AY.5	0.00159
ORF7a	38	G38V	gGa	gTa	76	76	D.2	0.005703
ORF7a	38	G38G	ggA	ggC	75	75	AY.23	0.005231
ORF7a	38	G38X	Gga	Tga	75	75	AY.47	0.002333
ORF7a	38	G38V	gGa	gTa	75	75	AY.6	0.003085
ORF7a	38	G38X	Gga	Tga	73	73	AY.103	0.000453
ORF7a	38	G38del2	gGA	g--	58	72	AY.4	0.00009
ORF7a	38	G38del2	GGa	--a	14	72	AY.4	0.000022
ORF7a	38	G38G	ggA	ggC	71	72	AY.46.6	0.005127
ORF7a	38	G38G	ggA	ggG	1	72	AY.46.6	0.000072
ORF7a	38	G38del	GGA	---	70	70	AY.103	0.000435
ORF7a	38	G38G	ggA	ggC	69	69	AY.117	0.005832
ORF7a	38	G38X	Gga	Tga	66	66	AY.9	0.004461
ORF7a	38	G38G	ggA	ggC	36	61	B.1	0.00033
ORF7a	38	G38G	ggA	ggG	24	61	B.1	0.00022
ORF7a	38	G38G	ggA	ggT	1	61	B.1	0.000009
ORF7a	38	G38V	gGa	gTa	59	59	AY.102	0.001564
ORF7a	38	G38G	ggA	ggC	58	59	B	0.007413
ORF7a	38	G38G	ggA	ggG	1	59	B	0.000128
ORF7a	38	G38A	gGa	gCa	55	55	AY.4	0.000086
ORF7a	38	G38V	gGa	gTa	54	54	C.37	0.006267
ORF7a	38	G38X	Gga	Tga	53	53	AY.42	0.002132
ORF7a	38	G38X	Gga	Tga	52	52	AY.44	0.000317
ORF7a	38	G38X	Gga	Tga	46	46	AY.98.1	0.002228
ORF7a	38	G38X	Gga	Tga	45	45	B.1.526	0.001058
ORF7a	38	G38G	ggA	ggC	44	44	AY.114	0.010169
ORF7a	38	G38del	GGA	---	44	44	AY.29	0.000694
ORF7a	38	G38del	GGA	---	44	44	AY.3	0.000438
ORF7a	38	G38V	gGa	gTa	44	44	AY.39	0.001087
ORF7a	38	G38G	ggA	ggC	42	43	AY.47	0.001306
ORF7a	38	G38G	ggA	ggT	1	43	AY.47	0.000031
ORF7a	38	G38V	gGa	gTa	43	43	B.1.177	0.000566
ORF7a	38	G38V	gGa	gTa	42	42	B.1.429	0.000988
ORF7a	38	G38G	ggA	ggC	40	41	AY.98	0.00316
ORF7a	38	G38G	ggA	ggG	1	41	AY.98	0.000079
ORF7a	38	G38del	GGA	---	40	40	AY.44	0.000243
ORF7a	38	G38E	gGa	gAa	39	39	B.1.617.2	0.000147
ORF7a	38	G38V	gGa	gTa	38	38	AY.3.1	0.00324
ORF7a	38	G38V	gGa	gTa	37	37	B.1.1	0.000671
ORF7a	38	G38R	Gga	Aga	33	35	AY.119	0.001165
ORF7a	38	G38R	Gga	Cga	2	35	AY.119	0.000071
ORF7a	38	G38V	gGa	gTa	35	35	AY.20	0.00136
ORF7a	38	G38V	gGa	gTa	35	35	AY.42	0.001408
ORF7a	38	G38V	gGa	gTa	35	35	B.1.221	0.002486
ORF7a	38	G38del1	ggA	gg-	34	35	B.1.617.2	0.000128
ORF7a	38	G38del1	Gga	-ga	1	35	B.1.617.2	0.000004
ORF7a	38	G38V	gGa	gTa	34	34	AY.75	0.001905
ORF7a	38	G38E	gGa	gAa	34	34	D.2	0.002551
ORF7a	38	G38A	gGa	gCa	33	33	B.1.617.2	0.000124
ORF7a	38	G38V	gGa	gTa	32	32	AY.100	0.001472
ORF7a	38	G38V	gGa	gTa	32	32	AY.29	0.000505
ORF7a	38	G38G	ggA	ggC	32	32	AY.45	0.003894
ORF7a	38	G38V	gGa	gTa	32	32	B.1.351	0.000951
ORF7a	38	G38X	Gga	Tga	31	31	AY.33	0.00207
ORF7a	38	G38R	Gga	Aga	30	30	AY.1	0.011872
ORF7a	38	G38E	gGa	gAa	30	30	AY.119	0.001059
ORF7a	38	G38V	gGa	gTa	30	30	AY.47	0.000933
ORF7a	38	G38V	gGa	gTa	30	30	B.1.1.519	0.001191
ORF7a	38	G38V	gGa	gTa	29	29	AY.41	0.008524
ORF7a	38	G38P	GGa	CCa	27	27	All	0.000005
ORF7a	38	G38G	ggA	ggC	25	27	AY.3	0.000249
ORF7a	38	G38R	Gga	Cga	24	27	AY.3	0.000239
ORF7a	38	G38R	Gga	Aga	3	27	AY.3	0.00003
ORF7a	38	G38G	ggA	ggT	1	27	AY.3	0.00001
ORF7a	38	G38G	ggA	ggG	1	27	AY.3	0.00001
ORF7a	38	G38X	Gga	Tga	27	27	AY.3.1	0.002302
ORF7a	38	G38G	ggA	ggC	26	27	AY.46.4	0.004277
ORF7a	38	G38G	ggA	ggT	1	27	AY.46.4	0.000165
ORF7a	38	G38del1	ggA	gg-	27	27	B.1.1.284	0.0029
ORF7a	38	G38del1	ggA	gg-	24	27	B.1.1.7	0.000021
ORF7a	38	G38del1	Gga	-ga	2	27	B.1.1.7	0.000002
ORF7a	38	G38del1	GGa	-Aa	1	27	B.1.1.7	0.000001
ORF7a	38	G38V	gGa	gTa	27	27	B.1.160	0.000842
ORF7a	38	G38V	gGa	gTa	27	27	B.1.243	0.001879
ORF7a	38	G38V	gGa	gTa	27	27	B.1.621	0.00239
ORF7a	38	G38G	ggA	ggC	26	26	AY.119	0.000918
ORF7a	38	G38P	GGa	CCa	26	26	AY.3.1	0.002217
ORF7a	38	G38del	GGA	---	26	26	AY.3.1	0.002217
ORF7a	38	G38A	gGa	gCa	26	26	B.1.526	0.000611
ORF7a	38	G38X	Gga	Tga	24	24	AY.3	0.000239
ORF7a	38	G38G	ggA	ggC	24	24	AY.46	0.002498
ORF7a	38	G38A	gGa	gCa	24	24	AY.46.6	0.001733
ORF7a	38	G38G	ggA	ggG	23	24	B.1.1	0.000417
ORF7a	38	G38G	ggA	ggT	1	24	B.1.1	0.000018
ORF7a	38	G38R	Gga	Cga	21	24	B.1.429	0.000494
ORF7a	38	G38R	Gga	Aga	3	24	B.1.429	0.000071
ORF7a	38	G38V	gGa	gTa	24	24	B.1.525	0.002716
ORF7a	38	G38V	gGa	gTa	24	24	P.1.14	0.001147
ORF7a	38	G38V	gGa	gTa	23	23	AY.4.2	0.000499
ORF7a	38	G38G	ggA	ggG	14	23	C.37	0.001625
ORF7a	38	G38G	ggA	ggC	9	23	C.37	0.001045
ORF7a	38	G38X	Gga	Tga	21	21	AY.102	0.000557
ORF7a	38	G38G	ggA	ggC	21	21	AY.5	0.000434
ORF7a	38	G38del	GGA	---	21	21	B.1.1.214	0.001165
ORF7a	38	G38V	gGa	gTa	21	21	B.1.177.12	0.003186
ORF7a	38	G38V	gGa	gTa	21	21	B.1.526	0.000494
ORF7a	38	G38V	gGa	gTa	20	20	AK.2	0.909091
ORF7a	38	G38del	GGA	---	20	20	AY.43	0.000089
ORF7a	38	G38V	gGa	gTa	20	20	AY.5	0.000413
ORF7a	38	G38A	gGa	gCa	20	20	B.1	0.000183
ORF7a	38	G38A	gGa	gCa	20	20	B.1.2	0.000176
ORF7a	38	G38V	gGa	gTa	20	20	B.1.258	0.001331
ORF7a	38	G38G	ggA	ggG	19	20	B.1.621	0.001682
ORF7a	38	G38G	ggA	ggC	1	20	B.1.621	0.000089
ORF7a	38	G38G	ggA	ggG	19	20	P.1	0.000299
ORF7a	38	G38G	ggA	ggT	1	20	P.1	0.000016
ORF7a	38	G38V	gGa	gTa	19	19	AY.117	0.001606
ORF7a	38	G38del	GGA	---	19	19	AY.7.2	0.010626
ORF7a	38	G38V	gGa	gTa	19	19	AY.99.2	0.001751
ORF7a	38	G38R	Gga	Aga	10	18	AY.103	0.000062
ORF7a	38	G38R	Gga	Cga	8	18	AY.103	0.00005
ORF7a	38	G38X	Gga	Tga	18	18	AY.13	0.002898
ORF7a	38	G38A	gGa	gCa	18	18	AY.43	0.00008
ORF7a	38	G38R	Gga	Cga	14	18	AY.44	0.000085
ORF7a	38	G38R	Gga	Aga	4	18	AY.44	0.000024
ORF7a	38	G38X	Gga	Tga	18	18	AY.5	0.000372
ORF7a	38	G38V	gGa	gTa	18	18	B.1.596	0.001568
ORF7a	38	G38V	gGa	gTa	18	18	Q.8	0.002968
ORF7a	38	G38V	gGa	gTa	17	17	AY.7	0.003332
ORF7a	38	G38X	Gga	Tga	17	17	B.1.2	0.00015
ORF7a	38	G38X	Gga	Tga	17	17	B.1.218	0.087629
ORF7a	38	G38V	gGa	gTa	17	17	B.1.617.1	0.002192
ORF7a	38	G38R	Gga	Cga	16	16	AY.113	0.002278
ORF7a	38	G38V	gGA	gTC	12	16	AY.25	0.000072
ORF7a	38	G38V	gGa	gTa	4	16	AY.25	0.000024
ORF7a	38	G38X	Gga	Tga	16	16	AY.39.1	0.000634
ORF7a	38	G38R	Gga	Aga	15	16	AY.4.2	0.000325
ORF7a	38	G38R	Gga	Cga	1	16	AY.4.2	0.000022
ORF7a	38	G38R	Gga	Cga	13	16	AY.43	0.000058
ORF7a	38	G38R	Gga	Aga	3	16	AY.43	0.000013
ORF7a	38	G38V	gGa	gTa	16	16	AY.61	0.001676
ORF7a	38	G38V	gGa	gTa	16	16	B.1.177.33	0.026316
ORF7a	38	G38del2	GGa	--a	16	16	U.1	0.205128
ORF7a	38	G38G	ggA	ggC	15	15	AY.102	0.000398
ORF7a	38	G38R	Gga	Cga	15	15	B.1.1.214	0.000832
ORF7a	38	G38del2	gGA	g--	13	15	B.1.617.2	0.000049
ORF7a	38	G38del2	GGa	--a	2	15	B.1.617.2	0.000008
ORF7a	38	G38X	Gga	Tga	14	14	AY.20	0.000544
ORF7a	38	G38A	gGa	gCa	14	14	AY.26	0.000396
ORF7a	38	G38A	gGa	gCa	14	14	AY.3	0.000139
ORF7a	38	G38del2	gGA	g--	13	14	AY.39	0.000321
ORF7a	38	G38del2	GGa	--a	1	14	AY.39	0.000025
ORF7a	38	G38V	gGa	gTa	14	14	AY.45	0.001704
ORF7a	38	G38X	Gga	Tga	14	14	B.1	0.000128
ORF7a	38	G38A	gGa	gCa	13	13	AY.102	0.000345
ORF7a	38	G38R	Gga	Aga	12	13	AY.45	0.00146
ORF7a	38	G38R	Gga	Cga	1	13	AY.45	0.000122
ORF7a	38	G38G	ggA	ggC	13	13	AY.9.2	0.000477
ORF7a	38	G38V	gGa	gTa	13	13	AY.9.2	0.000477
ORF7a	38	G38V	gGa	gTa	13	13	AY.98.1	0.00063
ORF7a	38	G38del	GGA	---	13	13	B.1	0.000119
ORF7a	38	G38X	Gga	Tga	13	13	B.1.160	0.000405
ORF7a	38	G38G	ggA	ggC	10	12	AY.20	0.000389
ORF7a	38	G38G	ggA	ggG	2	12	AY.20	0.000078
ORF7a	38	G38V	gGa	gTa	12	12	AY.33	0.000801
ORF7a	38	G38del	GGA	---	12	12	AY.39	0.000297
ORF7a	38	G38X	Gga	Tga	12	12	B.1.177	0.000158
ORF7a	38	G38del	GGA	---	12	12	B.1.324	0.019262
ORF7a	38	G38C	GgA	TgC	11	11	All	0.000002
ORF7a	38	G38A	gGa	gCa	11	11	AY.120	0.000409
ORF7a	38	G38G	ggA	ggC	10	11	AY.26	0.000283
ORF7a	38	G38G	ggA	ggG	1	11	AY.26	0.000028
ORF7a	38	G38R	Gga	Aga	7	11	AY.29	0.00011
ORF7a	38	G38R	Gga	Cga	4	11	AY.29	0.000063
ORF7a	38	G38V	gGa	gTa	11	11	AY.39.1	0.000436
ORF7a	38	G38V	gGa	gTa	11	11	B.1.1.304	0.030899
ORF7a	38	G38G	ggA	ggG	10	11	B.1.160	0.000312
ORF7a	38	G38G	ggA	ggC	1	11	B.1.160	0.000031
ORF7a	38	G38V	gGa	gTa	11	11	B.1.214.3	0.078571
ORF7a	38	G38R	Gga	Cga	8	11	B.1.526	0.000188
ORF7a	38	G38R	Gga	Aga	3	11	B.1.526	0.000071
ORF7a	38	G38X	Gga	Tga	11	11	B.1.637	0.000804
ORF7a	38	G38V	gGa	gTa	11	11	P.1.7	0.003512
ORF7a	38	G38L	GGa	TTa	8	10	All	0.000002
ORF7a	38	G38L	GGa	CTa	2	10	All	0
ORF7a	38	G38G	ggA	ggC	10	10	AY.100	0.00046
ORF7a	38	G38del2	gGA	g--	10	10	AY.103	0.000062
ORF7a	38	G38V	gGa	gTa	10	10	AY.113	0.001424
ORF7a	38	G38X	Gga	Tga	10	10	AY.119	0.000353
ORF7a	38	G38V	gGa	gTa	10	10	AY.120	0.000372
ORF7a	38	G38A	gGa	gCa	10	10	AY.20	0.000389
ORF7a	38	G38G	ggA	ggC	10	10	AY.22	0.020921
ORF7a	38	G38V	gGa	gTa	10	10	AY.23	0.000697
ORF7a	38	G38C	GgA	TgC	10	10	AY.25	0.00006
ORF7a	38	G38X	Gga	Tga	10	10	AY.39	0.000247
ORF7a	38	G38V	gGa	gTa	10	10	AY.54	0.000953
ORF7a	38	G38G	ggA	ggC	10	10	AY.82	0.013569
ORF7a	38	G38G	ggA	ggT	6	10	B.1.177	0.000079
ORF7a	38	G38G	ggA	ggG	2	10	B.1.177	0.000026
ORF7a	38	G38G	ggA	ggC	2	10	B.1.177	0.000026
ORF7a	38	G38del	GGA	---	10	10	B.1.2	0.000088
ORF7a	38	G38A	gGa	gCa	10	10	D.2	0.00075
ORF7a	38	G38V	gGa	gTa	9	9	AY.119	0.000318
ORF7a	38	G38G	ggA	ggC	9	9	AY.33	0.000601
ORF7a	38	G38X	Gga	Tga	9	9	AY.4.2	0.000195
ORF7a	38	G38X	Gga	Tga	9	9	AY.6	0.00037
ORF7a	38	G38G	ggA	ggC	9	9	AY.96	0.018672
ORF7a	38	G38del	GGA	---	9	9	B.1.1.284	0.000967
ORF7a	38	G38V	gGa	gTa	9	9	B.1.1.434	0.003137
ORF7a	38	G38V	gGa	gTa	9	9	B.1.427	0.000454
ORF7a	38	G38del	GGA	---	9	9	C.37	0.001045
ORF7a	38	G38del	GGA	---	9	9	P.1	0.000142
ORF7a	38	G38X	Gga	Tga	9	9	P.1	0.000142
ORF7a	38	G38R	Gga	Cga	8	8	AY.100	0.000368
ORF7a	38	G38G	ggA	ggC	8	8	AY.109	0.005917
ORF7a	38	G38G	ggA	ggC	8	8	AY.116	0.002294
ORF7a	38	G38V	gGa	gTa	8	8	AY.13	0.001288
ORF7a	38	G38V	gGa	gTa	8	8	AY.14	0.000704
ORF7a	38	G38V	gGa	gTa	8	8	AY.16.1	0.003759
ORF7a	38	G38E	gGa	gAa	8	8	AY.20	0.000311
ORF7a	38	G38del	GGA	---	8	8	AY.20	0.000311
ORF7a	38	G38del	GGA	---	8	8	AY.23	0.000558
ORF7a	38	G38X	Gga	Tga	8	8	AY.29	0.000126
ORF7a	38	G38X	Gga	Tga	8	8	AY.32	0.00426
ORF7a	38	G38A	gGa	gCa	8	8	AY.44	0.000049
ORF7a	38	G38V	gGa	gTa	8	8	AY.46.2	0.005083
ORF7a	38	G38del	GGA	---	8	8	AY.47	0.000249
ORF7a	38	G38V	gGa	gTa	8	8	AY.5.4	0.002214
ORF7a	38	G38G	ggA	ggC	7	8	AY.54	0.000667
ORF7a	38	G38G	ggA	ggG	1	8	AY.54	0.000095
ORF7a	38	G38X	Gga	Tga	8	8	AY.84	0.0035
ORF7a	38	G38E	gGa	gAa	8	8	AY.9	0.000541
ORF7a	38	G38G	ggA	ggC	8	8	AY.93	0.002185
ORF7a	38	G38A	gGa	gCa	8	8	B.1.1.128	0.056738
ORF7a	38	G38X	Gga	Tga	8	8	B.1.110.3	0.005747
ORF7a	38	G38G	ggA	ggG	5	8	B.1.2	0.000044
ORF7a	38	G38G	ggA	ggC	2	8	B.1.2	0.000018
ORF7a	38	G38G	ggA	ggT	1	8	B.1.2	0.000009
ORF7a	38	G38V	gGa	gTa	8	8	B.1.234	0.001056
ORF7a	38	G38R	Gga	Cga	4	8	B.1.351	0.000119
ORF7a	38	G38R	Gga	Aga	4	8	B.1.351	0.000119
ORF7a	38	G38X	Gga	Tga	8	8	B.1.525	0.000905
ORF7a	38	G38E	gGa	gAa	8	8	C.37	0.000929
ORF7a	38	G38X	Gga	Tga	8	8	P.1.14	0.000382
ORF7a	38	G38A	gGa	gCa	7	7	AY.103	0.000043
ORF7a	38	G38V	gGa	gTa	7	7	AY.116	0.002007
ORF7a	38	G38V	gGa	gTa	7	7	AY.118	0.000439
ORF7a	38	G38A	gGa	gCa	7	7	AY.120.1	0.002247
ORF7a	38	G38del	GGA	---	7	7	AY.26	0.000198
ORF7a	38	G38G	ggA	ggC	7	7	AY.3.1	0.000597
ORF7a	38	G38V	gGa	gTa	7	7	AY.34	0.000679
ORF7a	38	G38del2	gGA	g--	6	7	AY.44	0.000037
ORF7a	38	G38del2	GGa	--a	1	7	AY.44	0.000006
ORF7a	38	G38X	Gga	Tga	7	7	AY.9.1	0.000586
ORF7a	38	G38G	ggA	ggC	7	7	AY.98.1	0.000339
ORF7a	38	G38R	Gga	Cga	4	7	B.1	0.000037
ORF7a	38	G38R	Gga	Aga	3	7	B.1	0.000027
ORF7a	38	G38V	gGa	gTa	7	7	B.1.1.318	0.002112
ORF7a	38	G38R	Gga	Cga	5	7	B.1.1.519	0.000199
ORF7a	38	G38R	Gga	Aga	2	7	B.1.1.519	0.000079
ORF7a	38	G38del2	gGA	g--	4	7	B.1.1.7	0.000004
ORF7a	38	G38del2	GGa	--a	3	7	B.1.1.7	0.000003
ORF7a	38	G38V	gGa	gTa	7	7	B.1.177.78	0.067961
ORF7a	38	G38A	gGa	gCa	7	7	P.1.15	0.001626
ORF7a	38	G38V	gGa	gTa	7	7	R.1	0.00063
ORF7a	38	G38del	GGA	---	6	6	AY.100	0.000276
ORF7a	38	G38R	Gga	Cga	5	6	AY.102	0.000133
ORF7a	38	G38R	Gga	Aga	1	6	AY.102	0.000027
ORF7a	38	G38G	ggA	ggC	6	6	AY.106	0.002009
ORF7a	38	G38R	Gga	Aga	6	6	AY.109	0.004438
ORF7a	38	G38X	Gga	Tga	6	6	AY.113	0.000854
ORF7a	38	G38G	ggA	ggC	6	6	AY.118	0.000376
ORF7a	38	G38del2	gGA	g--	6	6	AY.25	0.000036
ORF7a	38	G38X	Gga	Tga	6	6	AY.26	0.00017
ORF7a	38	G38del1	ggA	gg-	6	6	AY.3	0.00006
ORF7a	38	G38R	Gga	Cga	6	6	AY.3.1	0.000512
ORF7a	38	G38G	ggA	ggC	6	6	AY.5.3	0.002024
ORF7a	38	G38G	ggA	ggC	6	6	AY.5.4	0.00166
ORF7a	38	G38del2	gGA	g--	6	6	AY.5.4	0.00166
ORF7a	38	G38X	Gga	Tga	6	6	AY.61	0.000629
ORF7a	38	G38R	Gga	Aga	6	6	B.1.160	0.000187
ORF7a	38	G38del	GGA	---	6	6	B.1.177	0.000079
ORF7a	38	G38del	GGA	---	6	6	B.1.177.44	0.003114
ORF7a	38	G38E	gGa	gAa	6	6	B.1.2	0.000053
ORF7a	38	G38R	Gga	Aga	4	6	B.1.2	0.000035
ORF7a	38	G38R	Gga	Cga	2	6	B.1.2	0.000018
ORF7a	38	G38X	Gga	Tga	6	6	B.1.351	0.000178
ORF7a	38	G38X	Gga	Tga	6	6	C.37.1	0.015707
ORF7a	38	G38R	Gga	Cga	5	6	P.1	0.000079
ORF7a	38	G38R	Gga	Aga	1	6	P.1	0.000016
ORF7a	38	G38R	Gga	Cga	6	6	P.1.16	0.002245
ORF7a	38	G38X	Gga	Tga	6	6	Q.8	0.000989
ORF7a	38	G38V	gGa	gTa	5	5	A.2.5	0.002495
ORF7a	38	G38X	Gga	Tga	5	5	AY.120	0.000186
ORF7a	38	G38V	gGa	gTa	5	5	AY.121	0.000677
ORF7a	38	G38V	gGa	gTa	5	5	AY.29.1	0.001103
ORF7a	38	G38del2	gGA	g--	4	5	AY.3	0.00004
ORF7a	38	G38del2	GGa	--a	1	5	AY.3	0.00001
ORF7a	38	G38del1	ggA	gg-	4	5	AY.3.1	0.000341
ORF7a	38	G38del1	GGA	-NN	1	5	AY.3.1	0.000085
ORF7a	38	G38V	gGa	gTa	5	5	AY.38	0.002496
ORF7a	38	G38A	gGa	gCa	5	5	AY.39	0.000124
ORF7a	38	G38R	Gga	Aga	3	5	AY.39	0.000074
ORF7a	38	G38R	Gga	Cga	2	5	AY.39	0.000049
ORF7a	38	G38G	ggA	ggC	5	5	AY.46.1	0.005133
ORF7a	38	G38A	gGa	gCa	5	5	AY.61	0.000524
ORF7a	38	G38V	gGa	gTa	5	5	AY.65	0.002665
ORF7a	38	G38R	Gga	Aga	5	5	AY.72	0.006803
ORF7a	38	G38V	gGa	gTa	5	5	AY.73	0.003327
ORF7a	38	G38V	gGa	gTa	5	5	AY.74	0.000578
ORF7a	38	G38V	gGa	gTa	5	5	AY.9	0.000338
ORF7a	38	G38V	gGa	gTa	5	5	AY.9.1	0.000419
ORF7a	38	G38X	Gga	Tga	5	5	AY.9.2	0.000184
ORF7a	38	G38V	gGa	gTa	5	5	AY.93	0.001365
ORF7a	38	G38del	GGA	---	5	5	AY.98.1	0.000242
ORF7a	38	G38X	Gga	Tga	5	5	AY.99.2	0.000461
ORF7a	38	G38R	Gga	Cga	5	5	B.1.1	0.000091
ORF7a	38	G38V	gGa	gTa	5	5	B.1.1.214	0.000277
ORF7a	38	G38V	gGa	gTa	5	5	B.1.1.372	0.003444
ORF7a	38	G38del	GGA	---	5	5	B.1.1.56	0.089286
ORF7a	38	G38V	gGa	gTa	5	5	B.1.1.63	0.001929
ORF7a	38	G38A	gGa	gCa	5	5	B.1.160	0.000156
ORF7a	38	G38X	Gga	Tga	5	5	B.1.221	0.000355
ORF7a	38	G38del	GGA	---	5	5	B.1.429	0.000118
ORF7a	38	G38X	Gga	Tga	5	5	B.1.564	0.002129
ORF7a	38	G38X	Gga	Tga	5	5	B.1.575	0.001517
ORF7a	38	G38V	gGa	gTa	5	5	B.1.637	0.000365
ORF7a	38	G38del	GGA	---	5	5	B.1.637	0.000365
ORF7a	38	G38del1	GGa	-Aa	3	5	U.1	0.038462
ORF7a	38	G38del1	GGa	-Na	2	5	U.1	0.025641
ORF7a	38	G38V	gGa	gTa	4	4	AE.8	0.001956
ORF7a	38	G38S	GgA	AgC	3	4	All	0.000001
ORF7a	38	G38D	gGA	gAC	3	4	All	0.000001
ORF7a	38	G38S	GGa	TCa	1	4	All	0
ORF7a	38	G38D	gGA	gAT	1	4	All	0
ORF7a	38	G38A	gGa	gCa	4	4	AY.100	0.000184
ORF7a	38	G38G	ggA	ggC	4	4	AY.105	0.002572
ORF7a	38	G38X	Gga	Tga	4	4	AY.106	0.00134
ORF7a	38	G38G	ggA	ggC	4	4	AY.108	0.00441
ORF7a	38	G38A	gGa	gCa	4	4	AY.121	0.000541
ORF7a	38	G38G	ggA	ggC	4	4	AY.19	0.004561
ORF7a	38	G38del2	gGA	g--	4	4	AY.20	0.000155
ORF7a	38	G38del1	ggA	gg-	3	4	AY.25	0.000018
ORF7a	38	G38del1	GgA	-gC	1	4	AY.25	0.000006
ORF7a	38	G38X	Gga	Tga	4	4	AY.27	0.000259
ORF7a	38	G38V	gGa	gTa	4	4	AY.30	0.001583
ORF7a	38	G38G	ggA	ggT	3	4	AY.34	0.000291
ORF7a	38	G38G	ggA	ggC	1	4	AY.34	0.000097
ORF7a	38	G38G	ggA	ggC	4	4	AY.34.1	0.00204
ORF7a	38	G38del	GGA	---	4	4	AY.4.2	0.000087
ORF7a	38	G38V	gGa	gTa	4	4	AY.40	0.003857
ORF7a	38	G38A	gGa	gCa	4	4	AY.42	0.000161
ORF7a	38	G38G	ggA	ggC	4	4	AY.42	0.000161
ORF7a	38	G38R	Gga	Cga	3	4	AY.42	0.000121
ORF7a	38	G38R	Gga	Aga	1	4	AY.42	0.00004
ORF7a	38	G38E	gGa	gAa	4	4	AY.43	0.000018
ORF7a	38	G38E	gGa	gAa	4	4	AY.46.5	0.000794
ORF7a	38	G38V	gGa	gTa	4	4	AY.46.6	0.000289
ORF7a	38	G38G	ggA	ggC	4	4	AY.58	0.00363
ORF7a	38	G38X	Gga	Tga	4	4	AY.59	0.002119
ORF7a	38	G38R	Gga	Cga	4	4	AY.61	0.000419
ORF7a	38	G38G	ggA	ggC	4	4	AY.67	0.001857
ORF7a	38	G38G	ggA	ggC	4	4	AY.68	0.001095
ORF7a	38	G38A	gGa	gCa	4	4	AY.68	0.001095
ORF7a	38	G38G	ggA	ggC	4	4	AY.70	0.000834
ORF7a	38	G38V	gGa	gTa	4	4	AY.71	0.0019
ORF7a	38	G38V	gGa	gTa	4	4	AY.75.1	0.000721
ORF7a	38	G38G	ggA	ggC	4	4	AY.75.1	0.000721
ORF7a	38	G38G	ggA	ggC	4	4	AY.85	0.001709
ORF7a	38	G38del2	gGA	g--	4	4	AY.9.2	0.000147
ORF7a	38	G38G	ggA	ggC	4	4	AY.91	0.002922
ORF7a	38	G38G	ggA	ggC	4	4	AY.99	0.004197
ORF7a	38	G38E	gGa	gAa	4	4	B.1	0.000037
ORF7a	38	G38V	gGa	gTa	4	4	B.1.1.369	0.001785
ORF7a	38	G38E	gGa	gAa	4	4	B.1.177.86	0.000734
ORF7a	38	G38V	gGa	gTa	4	4	B.1.416.1	0.00625
ORF7a	38	G38A	gGa	gCa	4	4	B.1.427	0.000202
ORF7a	38	G38R	Gga	Cga	4	4	B.1.427	0.000202
ORF7a	38	G38X	Gga	Tga	4	4	B.1.429	0.000094
ORF7a	38	G38del	GGA	---	4	4	B.1.525	0.000453
ORF7a	38	G38del	GGA	---	4	4	B.1.526	0.000094
ORF7a	38	G38V	gGa	gTa	4	4	B.1.575	0.001214
ORF7a	38	G38G	ggA	ggC	4	4	B.1.582	0.001963
ORF7a	38	G38G	ggA	ggC	4	4	B.1.596	0.000349
ORF7a	38	G38X	Gga	Tga	4	4	C.37	0.000464
ORF7a	38	G38X	Gga	Tga	4	4	D.2	0.0003
ORF7a	38	G38X	Gga	Tga	4	4	P.4	0.015209
ORF7a	38	G38X	Gga	Tga	3	3	AY.104	0.005952
ORF7a	38	G38V	gGa	gTa	3	3	AY.105	0.001929
ORF7a	38	G38del2	GGa	--a	3	3	AY.106	0.001005
ORF7a	38	G38E	gGa	gAa	3	3	AY.114	0.000693
ORF7a	38	G38del	GGA	---	3	3	AY.118	0.000188
ORF7a	38	G38R	Gga	Cga	3	3	AY.121	0.000406
ORF7a	38	G38del	GGA	---	3	3	AY.121	0.000406
ORF7a	38	G38R	Gga	Cga	3	3	AY.20	0.000117
ORF7a	38	G38X	Gga	Tga	3	3	AY.21	0.005693
ORF7a	38	G38X	Gga	Tga	3	3	AY.23	0.000209
ORF7a	38	G38D	gGA	gAC	3	3	AY.25	0.000018
ORF7a	38	G38S	GgA	AgC	3	3	AY.25	0.000018
ORF7a	38	G38V	gGa	gTa	3	3	AY.27	0.000194
ORF7a	38	G38G	ggA	ggC	3	3	AY.27	0.000194
ORF7a	38	G38G	ggA	ggC	3	3	AY.29	0.000047
ORF7a	38	G38E	gGa	gAa	3	3	AY.3	0.00003
ORF7a	38	G38del2	gGA	g--	3	3	AY.3.1	0.000256
ORF7a	38	G38R	Gga	Cga	3	3	AY.36	0.000445
ORF7a	38	G38V	gGa	gTa	3	3	AY.4.2.1	0.000447
ORF7a	38	G38del	GGA	---	3	3	AY.4.5	0.000322
ORF7a	38	G38G	ggA	ggC	2	3	AY.4.5	0.000215
ORF7a	38	G38G	ggA	ggG	1	3	AY.4.5	0.000107
ORF7a	38	G38del	GGA	---	3	3	AY.42	0.000121
ORF7a	38	G38G	ggA	ggC	3	3	AY.46.2	0.001906
ORF7a	38	G38X	Gga	Tga	3	3	AY.46.6	0.000217
ORF7a	38	G38del	GGA	---	3	3	AY.5	0.000062
ORF7a	38	G38E	gGa	gAa	3	3	AY.5	0.000062
ORF7a	38	G38V	gGa	gTa	3	3	AY.5.3	0.001012
ORF7a	38	G38V	gGa	gTa	3	3	AY.53	0.000863
ORF7a	38	G38A	gGa	gCa	3	3	AY.53	0.000863
ORF7a	38	G38E	gGa	gAa	3	3	AY.54	0.000286
ORF7a	38	G38G	ggA	ggC	2	3	AY.6	0.000082
ORF7a	38	G38G	ggA	ggG	1	3	AY.6	0.000041
ORF7a	38	G38X	Gga	Tga	3	3	AY.74	0.000347
ORF7a	38	G38G	ggA	ggG	2	3	AY.74	0.000231
ORF7a	38	G38G	ggA	ggC	1	3	AY.74	0.000116
ORF7a	38	G38G	ggA	ggC	3	3	AY.77	0.003382
ORF7a	38	G38V	gGa	gTa	3	3	AY.8	0.001818
ORF7a	38	G38G	ggA	ggC	3	3	AY.84	0.001312
ORF7a	38	G38del	GGA	---	3	3	AY.9	0.000203
ORF7a	38	G38V	gGa	gTa	3	3	AY.92	0.000862
ORF7a	38	G38G	ggA	ggC	3	3	AY.95	0.002283
ORF7a	38	G38E	gGa	gAa	3	3	AY.98	0.000237
ORF7a	38	G38G	ggA	ggC	3	3	AY.99.2	0.000276
ORF7a	38	G38E	gGa	gAa	3	3	B.1.1	0.000054
ORF7a	38	G38del	GGA	---	3	3	B.1.1	0.000054
ORF7a	38	G38X	Gga	Tga	3	3	B.1.1.214	0.000166
ORF7a	38	G38del	GGA	---	3	3	B.1.1.25	0.001706
ORF7a	38	G38V	gGa	gTa	3	3	B.1.1.420	0.003018
ORF7a	38	G38V	gGa	gTa	3	3	B.1.1.464	0.004418
ORF7a	38	G38L	GGa	TTa	2	3	B.1.1.7	0.000002
ORF7a	38	G38L	GGa	CTa	1	3	B.1.1.7	0.000001
ORF7a	38	G38del	GGA	---	3	3	B.1.160	0.000094
ORF7a	38	G38E	gGa	gAa	3	3	B.1.177	0.00004
ORF7a	38	G38V	gGa	gTa	3	3	B.1.177.81	0.000568
ORF7a	38	G38V	gGa	gTa	3	3	B.1.214.2	0.001799
ORF7a	38	G38del	GGA	---	3	3	B.1.234	0.000396
ORF7a	38	G38V	gGa	gTa	3	3	B.1.311	0.000824
ORF7a	38	G38G	ggA	ggG	3	3	B.1.351	0.000089
ORF7a	38	G38del	GGA	---	3	3	B.1.351	0.000089
ORF7a	38	G38V	gGa	gTa	3	3	B.1.36	0.000438
ORF7a	38	G38R	Gga	Aga	2	3	B.1.36	0.000292
ORF7a	38	G38R	Gga	Cga	1	3	B.1.36	0.000146
ORF7a	38	G38V	gGa	gTa	3	3	B.1.36.29	0.001552
ORF7a	38	G38V	gGa	gTa	3	3	B.1.409	0.002344
ORF7a	38	G38R	Gga	Cga	3	3	B.1.416.1	0.004687
ORF7a	38	G38A	gGa	gCa	3	3	B.1.429	0.000071
ORF7a	38	G38A	gGa	gCa	3	3	B.1.466.2	0.001174
ORF7a	38	G38G	ggA	ggG	2	3	B.1.526	0.000047
ORF7a	38	G38G	ggA	ggT	1	3	B.1.526	0.000024
ORF7a	38	G38X	Gga	Tga	3	3	B.1.621	0.000266
ORF7a	38	G38del	GGA	---	3	3	B.1.626	0.017143
ORF7a	38	G38G	ggA	ggC	3	3	B.1.637	0.000219
ORF7a	38	G38R	Gga	Aga	3	3	B.1.8	0.005917
ORF7a	38	G38A	gGa	gCa	3	3	P.1	0.000047
ORF7a	38	G38V	gGa	gTa	3	3	P.1.17	0.000485
ORF7a	38	G38A	gGa	gCa	3	3	Q.3	0.000435
ORF7a	38	G38del	GGA	---	3	3	Q.8	0.000495
ORF7a	38	G38V	gGa	gTa	2	2	A	0.000774
ORF7a	38	G38X	Gga	Tga	2	2	A.2.5	0.000998
ORF7a	38	G38del	GGA	---	2	2	A.28	0.005291
ORF7a	38	G38K	GGa	AAa	2	2	All	0
ORF7a	38	G38G	ggA	ggC	2	2	AU.3	0.004219
ORF7a	38	G38G	ggA	ggC	2	2	AY.1	0.000791
ORF7a	38	G38E	gGa	gAa	2	2	AY.100	0.000092
ORF7a	38	G38G	ggA	ggC	1	2	AY.101	0.00049
ORF7a	38	G38G	ggA	ggG	1	2	AY.101	0.00049
ORF7a	38	G38del1	Gga	-ga	1	2	AY.103	0.000006
ORF7a	38	G38del1	ggA	gg-	1	2	AY.103	0.000006
ORF7a	38	G38V	gGa	gTa	2	2	AY.104	0.003968
ORF7a	38	G38X	Gga	Tga	2	2	AY.105	0.001286
ORF7a	38	G38V	gGa	gTa	2	2	AY.106	0.00067
ORF7a	38	G38V	gGa	gTa	2	2	AY.107	0.000932
ORF7a	38	G38V	gGa	gTa	2	2	AY.109	0.001479
ORF7a	38	G38G	ggA	ggC	2	2	AY.110	0.000225
ORF7a	38	G38del	GGA	---	2	2	AY.110	0.000225
ORF7a	38	G38G	ggA	ggC	2	2	AY.111	0.000366
ORF7a	38	G38E	gGa	gAa	2	2	AY.113	0.000285
ORF7a	38	G38del1	ggA	gg-	2	2	AY.114	0.000462
ORF7a	38	G38X	Gga	Tga	2	2	AY.116	0.000574
ORF7a	38	G38X	Gga	Tga	2	2	AY.117	0.000169
ORF7a	38	G38del	GGA	---	2	2	AY.119	0.000071
ORF7a	38	G38V	gGa	gTa	2	2	AY.12	0.000632
ORF7a	38	G38del	GGA	---	2	2	AY.120	0.000074
ORF7a	38	G38R	Gga	Aga	2	2	AY.13	0.000322
ORF7a	38	G38G	ggA	ggG	2	2	AY.13	0.000322
ORF7a	38	G38A	gGa	gCa	2	2	AY.13	0.000322
ORF7a	38	G38R	Gga	Cga	1	2	AY.16	0.00038
ORF7a	38	G38R	Gga	Aga	1	2	AY.16	0.00038
ORF7a	38	G38G	ggA	ggC	2	2	AY.17	0.016393
ORF7a	38	G38R	Gga	Cga	2	2	AY.23	0.000139
ORF7a	38	G38X	Gga	Tga	2	2	AY.24	0.000862
ORF7a	38	G38A	gGa	gCa	2	2	AY.29	0.000032
ORF7a	38	G38del	GGA	---	2	2	AY.29.1	0.000441
ORF7a	38	G38A	gGa	gCa	2	2	AY.33	0.000134
ORF7a	38	G38del	GGA	---	2	2	AY.33	0.000134
ORF7a	38	G38del	GGA	---	2	2	AY.34	0.000194
ORF7a	38	G38X	Gga	Tga	2	2	AY.34	0.000194
ORF7a	38	G38R	Gga	Cga	1	2	AY.34	0.000097
ORF7a	38	G38R	Gga	Aga	1	2	AY.34	0.000097
ORF7a	38	G38V	gGa	gTa	2	2	AY.37	0.000632
ORF7a	38	G38R	Gga	Aga	2	2	AY.39.1	0.000079
ORF7a	38	G38G	ggA	ggG	1	2	AY.39.1	0.00004
ORF7a	38	G38G	ggA	ggC	1	2	AY.39.1	0.00004
ORF7a	38	G38V	gGa	gTa	2	2	AY.39.1.1	0.001449
ORF7a	38	G38R	Gga	Cga	2	2	AY.4.4	0.000818
ORF7a	38	G38X	Gga	Tga	2	2	AY.4.5	0.000215
ORF7a	38	G38del2	GGa	--a	2	2	AY.43	0.000009
ORF7a	38	G38del1	Gga	-ga	1	2	AY.44	0.000006
ORF7a	38	G38del1	ggA	gg-	1	2	AY.44	0.000006
ORF7a	38	G38X	Gga	Tga	2	2	AY.46	0.000208
ORF7a	38	G38X	Gga	Tga	2	2	AY.46.2	0.001271
ORF7a	38	G38V	gGa	gTa	2	2	AY.46.5	0.000397
ORF7a	38	G38E	gGa	gAa	2	2	AY.47	0.000062
ORF7a	38	G38del1	ggA	gg-	2	2	AY.47	0.000062
ORF7a	38	G38del2	GGa	--a	2	2	AY.5.3	0.000675
ORF7a	38	G38R	Gga	Cga	2	2	AY.5.3	0.000675
ORF7a	38	G38X	Gga	Tga	2	2	AY.5.4	0.000553
ORF7a	38	G38del	GGA	---	2	2	AY.5.4	0.000553
ORF7a	38	G38V	gGa	gTa	2	2	AY.51	0.001818
ORF7a	38	G38V	gGa	gTa	2	2	AY.52	0.001629
ORF7a	38	G38G	ggA	ggC	2	2	AY.52	0.001629
ORF7a	38	G38V	gGa	gTa	2	2	AY.58	0.001815
ORF7a	38	G38R	Gga	Aga	2	2	AY.58	0.001815
ORF7a	38	G38A	gGa	gCa	2	2	AY.6	0.000082
ORF7a	38	G38V	gGa	gTa	2	2	AY.60	0.001876
ORF7a	38	G38X	Gga	Tga	2	2	AY.62	0.000871
ORF7a	38	G38V	gGa	gTa	2	2	AY.63	0.000774
ORF7a	38	G38G	ggA	ggC	2	2	AY.65	0.001066
ORF7a	38	G38V	gGa	gTa	2	2	AY.68	0.000547
ORF7a	38	G38V	gGa	gTa	2	2	AY.7.2	0.001119
ORF7a	38	G38X	Gga	Tga	2	2	AY.70	0.000417
ORF7a	38	G38del	GGA	---	2	2	AY.75	0.000112
ORF7a	38	G38X	Gga	Tga	2	2	AY.75	0.000112
ORF7a	38	G38X	Gga	Tga	2	2	AY.75.1	0.000361
ORF7a	38	G38G	ggA	ggC	2	2	AY.79	0.002421
ORF7a	38	G38X	Gga	Tga	2	2	AY.85	0.000854
ORF7a	38	G38V	gGa	gTa	2	2	AY.87	0.001665
ORF7a	38	G38X	Gga	Tga	2	2	AY.87	0.001665
ORF7a	38	G38V	gGa	gTa	2	2	AY.88	0.001768
ORF7a	38	G38del	GGA	---	2	2	AY.9.2	0.000073
ORF7a	38	G38V	gGa	gTa	2	2	AY.91	0.001461
ORF7a	38	G38del	GGA	---	2	2	AY.98	0.000158
ORF7a	38	G38A	gGa	gCa	2	2	AY.98	0.000158
ORF7a	38	G38A	gGa	gCa	2	2	AY.98.1	0.000097
ORF7a	38	G38V	gGa	gTa	2	2	B	0.000256
ORF7a	38	G38del1	ggA	gg-	2	2	B.1	0.000018
ORF7a	38	G38A	gGa	gCa	2	2	B.1.1	0.000036
ORF7a	38	G38del1	ggA	gg-	2	2	B.1.1.214	0.000111
ORF7a	38	G38R	Gga	Cga	1	2	B.1.1.222	0.000204
ORF7a	38	G38R	Gga	Aga	1	2	B.1.1.222	0.000204
ORF7a	38	G38V	gGa	gTa	2	2	B.1.1.291	0.001485
ORF7a	38	G38V	gGa	gTa	2	2	B.1.1.294	0.002532
ORF7a	38	G38V	gGa	gTa	2	2	B.1.1.311	0.000716
ORF7a	38	G38A	gGa	gCa	2	2	B.1.1.336	0.033333
ORF7a	38	G38V	gGa	gTa	2	2	B.1.1.50	0.001358
ORF7a	38	G38A	gGa	gCa	2	2	B.1.1.519	0.000079
ORF7a	38	G38del	GGA	---	2	2	B.1.1.519	0.000079
ORF7a	38	G38X	Gga	Tga	2	2	B.1.1.519	0.000079
ORF7a	38	G38V	gGa	gTa	2	2	B.1.1.525	0.010929
ORF7a	38	G38V	gGa	gTa	2	2	B.1.1.526	0.007092
ORF7a	38	G38G	ggA	ggC	2	2	B.1.1.526	0.007092
ORF7a	38	G38X	Gga	Tga	2	2	B.1.111	0.00235
ORF7a	38	G38V	gGa	gTa	2	2	B.1.147	0.001512
ORF7a	38	G38E	gGa	gAa	2	2	B.1.160	0.000062
ORF7a	38	G38V	gGa	gTa	2	2	B.1.160.16	0.001859
ORF7a	38	G38G	ggA	ggC	2	2	B.1.160.22	0.013514
ORF7a	38	G38V	gGa	gTa	2	2	B.1.177.10	0.001756
ORF7a	38	G38del	GGA	---	2	2	B.1.177.43	0.002954
ORF7a	38	G38V	gGa	gTa	2	2	B.1.177.56	0.001335
ORF7a	38	G38E	gGa	gAa	2	2	B.1.177.84	0.013333
ORF7a	38	G38del	GGA	---	2	2	B.1.177.86	0.000367
ORF7a	38	G38R	Gga	Aga	2	2	B.1.177.86	0.000367
ORF7a	38	G38A	gGa	gCa	2	2	B.1.195	0.01005
ORF7a	38	G38del1	ggA	gg-	1	2	B.1.2	0.000009
ORF7a	38	G38del1	Gga	-ga	1	2	B.1.2	0.000009
ORF7a	38	G38V	gGa	gTa	2	2	B.1.214	0.007326
ORF7a	38	G38X	Gga	Tga	2	2	B.1.240	0.000431
ORF7a	38	G38V	gGa	gTa	2	2	B.1.241	0.001623
ORF7a	38	G38X	Gga	Tga	2	2	B.1.243	0.000139
ORF7a	38	G38A	gGa	gCa	2	2	B.1.258	0.000133
ORF7a	38	G38R	Gga	Cga	2	2	B.1.258	0.000133
ORF7a	38	G38del	GGA	---	2	2	B.1.258.11	0.000793
ORF7a	38	G38A	gGa	gCa	2	2	B.1.319	0.006098
ORF7a	38	G38V	gGa	gTa	2	2	B.1.351.2	0.000605
ORF7a	38	G38A	gGa	gCa	2	2	B.1.351.3	0.001753
ORF7a	38	G38del	GGA	---	2	2	B.1.36	0.000292
ORF7a	38	G38V	gGa	gTa	2	2	B.1.36.10	0.009569
ORF7a	38	G38R	Gga	Aga	2	2	B.1.36.8	0.002
ORF7a	38	G38E	gGa	gAa	2	2	B.1.36.8	0.002
ORF7a	38	G38E	gGa	gAa	2	2	B.1.362	0.003082
ORF7a	38	G38A	gGa	gCa	2	2	B.1.362.2	0.009434
ORF7a	38	G38V	gGa	gTa	2	2	B.1.367	0.001585
ORF7a	38	G38X	Gga	Tga	2	2	B.1.399	0.003868
ORF7a	38	G38E	gGa	gAa	2	2	B.1.429	0.000047
ORF7a	38	G38V	gGa	gTa	2	2	B.1.438.1	0.000215
ORF7a	38	G38G	ggA	ggC	2	2	B.1.466.2	0.000782
ORF7a	38	G38X	Gga	Tga	2	2	B.1.466.2	0.000782
ORF7a	38	G38V	gGa	gTa	2	2	B.1.466.2	0.000782
ORF7a	38	G38del1	ggA	gg-	2	2	B.1.526	0.000047
ORF7a	38	G38G	ggA	ggC	2	2	B.1.565	0.001621
ORF7a	38	G38A	gGa	gCa	2	2	B.1.596	0.000174
ORF7a	38	G38R	Gga	Cga	2	2	B.1.596	0.000174
ORF7a	38	G38G	ggA	ggG	2	2	B.1.610	0.007092
ORF7a	38	G38R	Gga	Cga	2	2	B.1.617.1	0.000258
ORF7a	38	G38V	gGa	gTa	2	2	B.1.619.1	0.001283
ORF7a	38	G38E	gGa	gAa	2	2	B.1.621	0.000177
ORF7a	38	G38V	gGa	gTa	2	2	B.1.621.1	0.001012
ORF7a	38	G38X	Gga	Tga	2	2	B.1.628	0.000705
ORF7a	38	G38V	gGa	gTa	2	2	B.3	0.001661
ORF7a	38	G38del	GGA	---	2	2	C.36.3	0.001134
ORF7a	38	G38del1	Gga	-ga	2	2	C.37	0.000232
ORF7a	38	G38V	gGa	gTa	2	2	C.37.1	0.005236
ORF7a	38	G38G	ggA	ggC	1	2	C.37.1	0.002618
ORF7a	38	G38G	ggA	ggG	1	2	C.37.1	0.002618
ORF7a	38	G38E	gGa	gAa	2	2	P.1	0.000032
ORF7a	38	G38V	gGa	gTa	2	2	P.1.15	0.000465
ORF7a	38	G38V	gGa	gTa	2	2	P.1.6	0.003891
ORF7a	38	G38A	gGa	gCa	2	2	P.1.7	0.000639
ORF7a	38	G38X	Gga	Tga	2	2	P.1.7	0.000639
ORF7a	38	G38V	gGa	gTa	2	2	Q.1	0.000253
ORF7a	38	G38del	GGA	---	2	2	R.1	0.00018
ORF7a	38	G38V	gGa	gTa	2	2	Y.1	0.025641
ORF7a	38	G38A	gGa	gCa	1	1	A	0.000387
ORF7a	38	G38del	GGA	---	1	1	A	0.000387
ORF7a	38	G38del	GGA	---	1	1	A.1	0.000282
ORF7a	38	G38G	ggA	ggC	1	1	A.2.5	0.000499
ORF7a	38	G38V	gGa	gTa	1	1	A.23.1	0.000704
ORF7a	38	G38V	gGa	gTa	1	1	A.29	0.005319
ORF7a	38	G38V	gGa	gTa	1	1	AD.2	0.000219
ORF7a	38	G38G	ggA	ggG	1	1	AE.8	0.000489
ORF7a	38	G38I	GGa	ATa	1	1	All	0
ORF7a	38	G38X	Gga	Tga	1	1	AY.1	0.000396
ORF7a	38	G38S	GGa	TCa	1	1	AY.100	0.000046
ORF7a	38	G38X	Gga	Tga	1	1	AY.100	0.000046
ORF7a	38	G38R	Gga	Cga	1	1	AY.101	0.00049
ORF7a	38	G38del	GGA	---	1	1	AY.102	0.000027
ORF7a	38	G38E	gGa	gAa	1	1	AY.103	0.000006
ORF7a	38	G38G	ggA	ggC	1	1	AY.104	0.001984
ORF7a	38	G38del	GGA	---	1	1	AY.108	0.001103
ORF7a	38	G38R	Gga	Aga	1	1	AY.108	0.001103
ORF7a	38	G38A	gGa	gCa	1	1	AY.108	0.001103
ORF7a	38	G38X	Gga	Tga	1	1	AY.109	0.00074
ORF7a	38	G38G	ggA	ggC	1	1	AY.11	0.001339
ORF7a	38	G38X	Gga	Tga	1	1	AY.110	0.000113
ORF7a	38	G38A	gGa	gCa	1	1	AY.111	0.000183
ORF7a	38	G38del	GGA	---	1	1	AY.113	0.000142
ORF7a	38	G38R	Gga	Cga	1	1	AY.116	0.000287
ORF7a	38	G38del	GGA	---	1	1	AY.116.1	0.000311
ORF7a	38	G38E	gGa	gAa	1	1	AY.117	0.000085
ORF7a	38	G38X	Gga	Tga	1	1	AY.118	0.000063
ORF7a	38	G38R	Gga	Cga	1	1	AY.118	0.000063
ORF7a	38	G38del2	gGA	g--	1	1	AY.119	0.000035
ORF7a	38	G38X	Gga	Tga	1	1	AY.12	0.000316
ORF7a	38	G38del	GGA	---	1	1	AY.12	0.000316
ORF7a	38	G38X	Gga	Tga	1	1	AY.120.1	0.000321
ORF7a	38	G38del	GGA	---	1	1	AY.120.1	0.000321
ORF7a	38	G38E	gGa	gAa	1	1	AY.120.1	0.000321
ORF7a	38	G38del1	ggA	gg-	1	1	AY.120.1	0.000321
ORF7a	38	G38G	ggA	ggC	1	1	AY.120.1	0.000321
ORF7a	38	G38V	gGa	gTa	1	1	AY.120.2.1	0.000498
ORF7a	38	G38E	gGa	gAa	1	1	AY.121	0.000135
ORF7a	38	G38del1	ggA	gg-	1	1	AY.13	0.000161
ORF7a	38	G38X	Gga	Tga	1	1	AY.14	0.000088
ORF7a	38	G38G	ggA	ggC	1	1	AY.14	0.000088
ORF7a	38	G38del1	ggA	gg-	1	1	AY.16	0.00038
ORF7a	38	G38E	gGa	gAa	1	1	AY.16	0.00038
ORF7a	38	G38V	gGa	gTa	1	1	AY.16	0.00038
ORF7a	38	G38del	GGA	---	1	1	AY.16.1	0.00047
ORF7a	38	G38G	ggA	ggG	1	1	AY.16.1	0.00047
ORF7a	38	G38V	gGa	gTa	1	1	AY.19	0.00114
ORF7a	38	G38R	Gga	Cga	1	1	AY.2	0.000356
ORF7a	38	G38V	gGa	gTa	1	1	AY.21	0.001898
ORF7a	38	G38E	gGa	gAa	1	1	AY.23	0.00007
ORF7a	38	G38A	gGa	gCa	1	1	AY.24	0.000431
ORF7a	38	G38V	gGa	gTa	1	1	AY.24	0.000431
ORF7a	38	G38A	gGa	gCa	1	1	AY.25	0.000006
ORF7a	38	G38del1	ggA	gg-	1	1	AY.26	0.000028
ORF7a	38	G38E	gGa	gAa	1	1	AY.27	0.000065
ORF7a	38	G38V	gGa	gTa	1	1	AY.28	0.00189
ORF7a	38	G38X	Gga	Tga	1	1	AY.29.1	0.000221
ORF7a	38	G38del2	gGA	g--	1	1	AY.29.1	0.000221
ORF7a	38	G38L	GGa	CTa	1	1	AY.3.1	0.000085
ORF7a	38	G38E	gGa	gAa	1	1	AY.3.1	0.000085
ORF7a	38	G38R	Gga	Cga	1	1	AY.30	0.000396
ORF7a	38	G38K	GGa	AAa	1	1	AY.30	0.000396
ORF7a	38	G38V	gGa	gTa	1	1	AY.32	0.000532
ORF7a	38	G38G	ggA	ggC	1	1	AY.32	0.000532
ORF7a	38	G38R	Gga	Aga	1	1	AY.32	0.000532
ORF7a	38	G38R	Gga	Cga	1	1	AY.33	0.000067
ORF7a	38	G38del1	ggA	gg-	1	1	AY.33	0.000067
ORF7a	38	G38del	GGA	---	1	1	AY.34.1	0.00051
ORF7a	38	G38V	gGa	gTa	1	1	AY.35	0.000233
ORF7a	38	G38del2	gGA	g--	1	1	AY.35	0.000233
ORF7a	38	G38V	gGa	gTa	1	1	AY.36	0.000148
ORF7a	38	G38E	gGa	gAa	1	1	AY.36	0.000148
ORF7a	38	G38X	Gga	Tga	1	1	AY.36	0.000148
ORF7a	38	G38X	Gga	Tga	1	1	AY.37	0.000316
ORF7a	38	G38K	GGa	AAa	1	1	AY.37	0.000316
ORF7a	38	G38del1	ggA	gg-	1	1	AY.39	0.000025
ORF7a	38	G38E	gGa	gAa	1	1	AY.39	0.000025
ORF7a	38	G38del	GGA	---	1	1	AY.39.1	0.00004
ORF7a	38	G38X	Gga	Tga	1	1	AY.39.2	0.001541
ORF7a	38	G38L	GGa	TTa	1	1	AY.4	0.000002
ORF7a	38	G38C	GgA	TgC	1	1	AY.4	0.000002
ORF7a	38	G38I	GGa	ATa	1	1	AY.4	0.000002
ORF7a	38	G38G	ggA	ggG	1	1	AY.4.2	0.000022
ORF7a	38	G38A	gGa	gCa	1	1	AY.4.2	0.000022
ORF7a	38	G38V	gGa	gTa	1	1	AY.4.4	0.000409
ORF7a	38	G38V	gGa	gTa	1	1	AY.4.5	0.000107
ORF7a	38	G38G	ggA	ggC	1	1	AY.40	0.000964
ORF7a	38	G38X	Gga	Tga	1	1	AY.40	0.000964
ORF7a	38	G38G	ggA	ggC	1	1	AY.41	0.000294
ORF7a	38	G38A	gGa	gCa	1	1	AY.41	0.000294
ORF7a	38	G38L	GGa	TTa	1	1	AY.42	0.00004
ORF7a	38	G38L	GGa	TTa	1	1	AY.43	0.000004
ORF7a	38	G38del1	GgA	-gN	1	1	AY.45	0.000122
ORF7a	38	G38A	gGa	gCa	1	1	AY.45	0.000122
ORF7a	38	G38X	Gga	Tga	1	1	AY.45	0.000122
ORF7a	38	G38del	GGA	---	1	1	AY.45	0.000122
ORF7a	38	G38del1	ggA	gg-	1	1	AY.46	0.000104
ORF7a	38	G38R	Gga	Aga	1	1	AY.46	0.000104
ORF7a	38	G38R	Gga	Cga	1	1	AY.46.2	0.000635
ORF7a	38	G38X	Gga	Tga	1	1	AY.46.3	0.000934
ORF7a	38	G38X	Gga	Tga	1	1	AY.46.5	0.000198
ORF7a	38	G38R	Gga	Aga	1	1	AY.47	0.000031
ORF7a	38	G38del2	gGA	g--	1	1	AY.47	0.000031
ORF7a	38	G38X	Gga	Tga	1	1	AY.49	0.003195
ORF7a	38	G38V	gGa	gTa	1	1	AY.49	0.003195
ORF7a	38	G38L	GGa	TTa	1	1	AY.5	0.000021
ORF7a	38	G38del2	gGA	g--	1	1	AY.5	0.000021
ORF7a	38	G38A	gGa	gCa	1	1	AY.5.4	0.000277
ORF7a	38	G38X	Gga	Tga	1	1	AY.51	0.000909
ORF7a	38	G38G	ggA	ggC	1	1	AY.51	0.000909
ORF7a	38	G38G	ggA	ggC	1	1	AY.53	0.000288
ORF7a	38	G38L	GGa	TTa	1	1	AY.53	0.000288
ORF7a	38	G38X	Gga	Tga	1	1	AY.53	0.000288
ORF7a	38	G38del2	gGA	g--	1	1	AY.54	0.000095
ORF7a	38	G38X	Gga	Tga	1	1	AY.54	0.000095
ORF7a	38	G38del	GGA	---	1	1	AY.54	0.000095
ORF7a	38	G38A	gGa	gCa	1	1	AY.55	0.000917
ORF7a	38	G38G	ggA	ggC	1	1	AY.55	0.000917
ORF7a	38	G38V	gGa	gTa	1	1	AY.56	0.001605
ORF7a	38	G38G	ggA	ggC	1	1	AY.57	0.000656
ORF7a	38	G38del	GGA	---	1	1	AY.58	0.000907
ORF7a	38	G38X	Gga	Tga	1	1	AY.58	0.000907
ORF7a	38	G38G	ggA	ggC	1	1	AY.59	0.00053
ORF7a	38	G38A	gGa	gCa	1	1	AY.59	0.00053
ORF7a	38	G38del	GGA	---	1	1	AY.6	0.000041
ORF7a	38	G38L	GGa	TTa	1	1	AY.60	0.000938
ORF7a	38	G38del	GGA	---	1	1	AY.61	0.000105
ORF7a	38	G38E	gGa	gAa	1	1	AY.61	0.000105
ORF7a	38	G38G	ggA	ggC	1	1	AY.64	0.000595
ORF7a	38	G38X	Gga	Tga	1	1	AY.64	0.000595
ORF7a	38	G38del	GGA	---	1	1	AY.66	0.00107
ORF7a	38	G38V	gGa	gTa	1	1	AY.66	0.00107
ORF7a	38	G38del	GGA	---	1	1	AY.68	0.000274
ORF7a	38	G38X	Gga	Tga	1	1	AY.69	0.000187
ORF7a	38	G38R	Gga	Cga	1	1	AY.7	0.000196
ORF7a	38	G38A	gGa	gCa	1	1	AY.7	0.000196
ORF7a	38	G38X	Gga	Tga	1	1	AY.7.1	0.000113
ORF7a	38	G38G	ggA	ggC	1	1	AY.7.2	0.000559
ORF7a	38	G38R	Gga	Aga	1	1	AY.70	0.000209
ORF7a	38	G38X	Gga	Tga	1	1	AY.71	0.000475
ORF7a	38	G38R	Gga	Aga	1	1	AY.71	0.000475
ORF7a	38	G38V	gGa	gTa	1	1	AY.72	0.001361
ORF7a	38	G38R	Gga	Aga	1	1	AY.73	0.000665
ORF7a	38	G38G	ggA	ggC	1	1	AY.73	0.000665
ORF7a	38	G38E	gGa	gAa	1	1	AY.75	0.000056
ORF7a	38	G38R	Gga	Cga	1	1	AY.75.1	0.00018
ORF7a	38	G38X	Gga	Tga	1	1	AY.76	0.004831
ORF7a	38	G38del	GGA	---	1	1	AY.76	0.004831
ORF7a	38	G38V	gGa	gTa	1	1	AY.77	0.001127
ORF7a	38	G38X	Gga	Tga	1	1	AY.77	0.001127
ORF7a	38	G38del	GGA	---	1	1	AY.79	0.001211
ORF7a	38	G38G	ggA	ggG	1	1	AY.81	0.001992
ORF7a	38	G38R	Gga	Aga	1	1	AY.82	0.001357
ORF7a	38	G38V	gGa	gTa	1	1	AY.82	0.001357
ORF7a	38	G38V	gGa	gTa	1	1	AY.84	0.000437
ORF7a	38	G38G	ggA	ggC	1	1	AY.88	0.000884
ORF7a	38	G38X	Gga	Tga	1	1	AY.88	0.000884
ORF7a	38	G38G	ggA	ggG	1	1	AY.9	0.000068
ORF7a	38	G38E	gGa	gAa	1	1	AY.9.1	0.000084
ORF7a	38	G38G	ggA	ggC	1	1	AY.9.1	0.000084
ORF7a	38	G38del	GGA	---	1	1	AY.9.1	0.000084
ORF7a	38	G38A	gGa	gCa	1	1	AY.9.1	0.000084
ORF7a	38	G38A	gGa	gCa	1	1	AY.9.2	0.000037
ORF7a	38	G38del	GGA	---	1	1	AY.92	0.000287
ORF7a	38	G38del	GGA	---	1	1	AY.94	0.000443
ORF7a	38	G38V	gGa	gTa	1	1	AY.94	0.000443
ORF7a	38	G38del2	gGA	g--	1	1	AY.98	0.000079
ORF7a	38	G38V	gGa	gTa	1	1	AY.98	0.000079
ORF7a	38	G38R	Gga	Aga	1	1	AY.98.1	0.000048
ORF7a	38	G38V	gGa	gTa	1	1	AY.99.1	0.001553
ORF7a	38	G38R	Gga	Cga	1	1	AY.99.2	0.000092
ORF7a	38	G38del	GGA	---	1	1	AY.99.2	0.000092
ORF7a	38	G38V	gGa	gTa	1	1	AZ.2	0.000821
ORF7a	38	G38A	gGa	gCa	1	1	AZ.4	0.003356
ORF7a	38	G38G	ggA	ggG	1	1	AZ.4	0.003356
ORF7a	38	G38R	Gga	Cga	1	1	B	0.000128
ORF7a	38	G38X	Gga	Tga	1	1	B.1.1	0.000018
ORF7a	38	G38V	gGa	gTa	1	1	B.1.1.112	0.058824
ORF7a	38	G38V	gGa	gTa	1	1	B.1.1.121	0.002427
ORF7a	38	G38R	Gga	Aga	1	1	B.1.1.135	0.004695
ORF7a	38	G38G	ggA	ggC	1	1	B.1.1.153	0.001095
ORF7a	38	G38X	Gga	Tga	1	1	B.1.1.157	0.000913
ORF7a	38	G38V	gGa	gTa	1	1	B.1.1.164	0.005155
ORF7a	38	G38R	Gga	Cga	1	1	B.1.1.176	0.000439
ORF7a	38	G38del	GGA	---	1	1	B.1.1.207	0.001182
ORF7a	38	G38V	gGa	gTa	1	1	B.1.1.216	0.00089
ORF7a	38	G38V	gGa	gTa	1	1	B.1.1.222	0.000204
ORF7a	38	G38E	gGa	gAa	1	1	B.1.1.222	0.000204
ORF7a	38	G38del	GGA	---	1	1	B.1.1.222	0.000204
ORF7a	38	G38R	Gga	Cga	1	1	B.1.1.25	0.000569
ORF7a	38	G38E	gGa	gAa	1	1	B.1.1.258	0.003257
ORF7a	38	G38X	Gga	Tga	1	1	B.1.1.273	0.006757
ORF7a	38	G38V	gGa	gTa	1	1	B.1.1.277	0.000759
ORF7a	38	G38V	gGa	gTa	1	1	B.1.1.28	0.000311
ORF7a	38	G38A	gGa	gCa	1	1	B.1.1.28	0.000311
ORF7a	38	G38X	Gga	Tga	1	1	B.1.1.284	0.000107
ORF7a	38	G38G	ggA	ggT	1	1	B.1.1.284	0.000107
ORF7a	38	G38V	gGa	gTa	1	1	B.1.1.303	0.002762
ORF7a	38	G38A	gGa	gCa	1	1	B.1.1.306	0.000438
ORF7a	38	G38E	gGa	gAa	1	1	B.1.1.306	0.000438
ORF7a	38	G38V	gGa	gTa	1	1	B.1.1.312	0.001912
ORF7a	38	G38G	ggA	ggG	1	1	B.1.1.312	0.001912
ORF7a	38	G38V	gGa	gTa	1	1	B.1.1.317	0.000412
ORF7a	38	G38G	ggA	ggT	1	1	B.1.1.317	0.000412
ORF7a	38	G38X	Gga	Tga	1	1	B.1.1.318	0.000302
ORF7a	38	G38del	GGA	---	1	1	B.1.1.318	0.000302
ORF7a	38	G38V	gGa	gTa	1	1	B.1.1.326	0.001761
ORF7a	38	G38del2	gGA	g--	1	1	B.1.1.33	0.000421
ORF7a	38	G38E	gGa	gAa	1	1	B.1.1.347	0.018182
ORF7a	38	G38A	gGa	gCa	1	1	B.1.1.348	0.000796
ORF7a	38	G38E	gGa	gAa	1	1	B.1.1.372	0.000689
ORF7a	38	G38V	gGa	gTa	1	1	B.1.1.389	0.006061
ORF7a	38	G38V	gGa	gTa	1	1	B.1.1.39	0.00051
ORF7a	38	G38A	gGa	gCa	1	1	B.1.1.398	0.003226
ORF7a	38	G38V	gGa	gTa	1	1	B.1.1.416	0.000905
ORF7a	38	G38A	gGa	gCa	1	1	B.1.1.429	0.004608
ORF7a	38	G38V	gGa	gTa	1	1	B.1.1.432	0.001266
ORF7a	38	G38A	gGa	gCa	1	1	B.1.1.434	0.000349
ORF7a	38	G38G	ggA	ggC	1	1	B.1.1.519	0.00004
ORF7a	38	G38del	GGA	---	1	1	B.1.1.522	0.017241
ORF7a	38	G38E	gGa	gAa	1	1	B.1.1.525	0.005464
ORF7a	38	G38V	gGa	gTa	1	1	B.1.1.54	0.003021
ORF7a	38	G38X	Gga	Tga	1	1	B.1.1.54	0.003021
ORF7a	38	G38V	gGa	gTa	1	1	B.1.1.67	0.004566
ORF7a	38	G38P	GGa	CCa	1	1	B.1.1.7	0.000001
ORF7a	38	G38del1	ggA	gg-	1	1	B.1.1.70	0.000341
ORF7a	38	G38A	gGa	gCa	1	1	B.1.1.70	0.000341
ORF7a	38	G38R	Gga	Aga	1	1	B.1.1.70	0.000341
ORF7a	38	G38A	gGa	gCa	1	1	B.1.104	0.00369
ORF7a	38	G38V	gGa	gTa	1	1	B.1.110.3	0.000718
ORF7a	38	G38G	ggA	ggG	1	1	B.1.111	0.001175
ORF7a	38	G38del	GGA	---	1	1	B.1.115	0.021739
ORF7a	38	G38A	gGa	gCa	1	1	B.1.147	0.000756
ORF7a	38	G38V	gGa	gTa	1	1	B.1.157	0.002985
ORF7a	38	G38V	gGa	gTa	1	1	B.1.160.7	0.002079
ORF7a	38	G38G	ggA	ggG	1	1	B.1.170	0.00431
ORF7a	38	G38R	Gga	Cga	1	1	B.1.177	0.000013
ORF7a	38	G38G	ggA	ggG	1	1	B.1.177.20	0.001517
ORF7a	38	G38R	Gga	Aga	1	1	B.1.177.21	0.000076
ORF7a	38	G38X	Gga	Tga	1	1	B.1.177.44	0.000519
ORF7a	38	G38X	Gga	Tga	1	1	B.1.177.5	0.001242
ORF7a	38	G38V	gGa	gTa	1	1	B.1.177.53	0.002392
ORF7a	38	G38X	Gga	Tga	1	1	B.1.177.57	0.000281
ORF7a	38	G38E	gGa	gAa	1	1	B.1.177.6	0.000977
ORF7a	38	G38del	GGA	---	1	1	B.1.177.63	0.002703
ORF7a	38	G38X	Gga	Tga	1	1	B.1.177.65	0.000665
ORF7a	38	G38R	Gga	Aga	1	1	B.1.177.69	0.001484
ORF7a	38	G38V	gGa	gTa	1	1	B.1.177.8	0.000752
ORF7a	38	G38del	GGA	---	1	1	B.1.177.80	0.001912
ORF7a	38	G38del	GGA	---	1	1	B.1.177.81	0.000189
ORF7a	38	G38X	Gga	Tga	1	1	B.1.177.82	0.000477
ORF7a	38	G38del	GGA	---	1	1	B.1.177.83	0.001481
ORF7a	38	G38V	gGa	gTa	1	1	B.1.177.83	0.001481
ORF7a	38	G38del2	gGA	g--	1	1	B.1.2	0.000009
ORF7a	38	G38A	gGa	gCa	1	1	B.1.213	0.014925
ORF7a	38	G38del	GGA	---	1	1	B.1.214.2	0.0006
ORF7a	38	G38G	ggA	ggC	1	1	B.1.218	0.005155
ORF7a	38	G38del	GGA	---	1	1	B.1.221	0.000071
ORF7a	38	G38V	gGa	gTa	1	1	B.1.221.1	0.002907
ORF7a	38	G38V	gGa	gTa	1	1	B.1.221.3	0.000833
ORF7a	38	G38V	gGa	gTa	1	1	B.1.222	0.001692
ORF7a	38	G38X	Gga	Tga	1	1	B.1.234	0.000132
ORF7a	38	G38E	gGa	gAa	1	1	B.1.235	0.002519
ORF7a	38	G38V	gGa	gTa	1	1	B.1.236	0.002053
ORF7a	38	G38A	gGa	gCa	1	1	B.1.237	0.004975
ORF7a	38	G38R	Gga	Aga	1	1	B.1.240	0.000216
ORF7a	38	G38V	gGa	gTa	1	1	B.1.240	0.000216
ORF7a	38	G38del	GGA	---	1	1	B.1.240	0.000216
ORF7a	38	G38E	gGa	gAa	1	1	B.1.243	0.00007
ORF7a	38	G38R	Gga	Cga	1	1	B.1.243	0.00007
ORF7a	38	G38A	gGa	gCa	1	1	B.1.243	0.00007
ORF7a	38	G38X	Gga	Tga	1	1	B.1.258	0.000067
ORF7a	38	G38A	gGa	gCa	1	1	B.1.258.11	0.000396
ORF7a	38	G38V	gGa	gTa	1	1	B.1.258.17	0.000104
ORF7a	38	G38del	GGA	---	1	1	B.1.258.17	0.000104
ORF7a	38	G38del1	Gga	-ga	1	1	B.1.258.17	0.000104
ORF7a	38	G38V	gGa	gTa	1	1	B.1.258.3	0.001675
ORF7a	38	G38V	gGa	gTa	1	1	B.1.305	0.002151
ORF7a	38	G38X	Gga	Tga	1	1	B.1.311	0.000275
ORF7a	38	G38V	gGa	gTa	1	1	B.1.319	0.003049
ORF7a	38	G38V	gGa	gTa	1	1	B.1.346	0.001311
ORF7a	38	G38X	Gga	Tga	1	1	B.1.351.2	0.000303
ORF7a	38	G38X	Gga	Tga	1	1	B.1.36	0.000146
ORF7a	38	G38X	Gga	Tga	1	1	B.1.36.1	0.00114
ORF7a	38	G38V	gGa	gTa	1	1	B.1.36.22	0.001208
ORF7a	38	G38R	Gga	Aga	1	1	B.1.36.29	0.000517
ORF7a	38	G38V	gGa	gTa	1	1	B.1.36.37	0.002778
ORF7a	38	G38G	ggA	ggC	1	1	B.1.36.38	0.001642
ORF7a	38	G38V	gGa	gTa	1	1	B.1.36.8	0.001
ORF7a	38	G38E	gGa	gAa	1	1	B.1.361	0.001289
ORF7a	38	G38V	gGa	gTa	1	1	B.1.366	0.004878
ORF7a	38	G38A	gGa	gCa	1	1	B.1.367	0.000792
ORF7a	38	G38V	gGa	gTa	1	1	B.1.369	0.000285
ORF7a	38	G38V	gGa	gTa	1	1	B.1.370	0.008
ORF7a	38	G38A	gGa	gCa	1	1	B.1.391	0.001127
ORF7a	38	G38V	gGa	gTa	1	1	B.1.391	0.001127
ORF7a	38	G38V	gGa	gTa	1	1	B.1.396	0.000706
ORF7a	38	G38V	gGa	gTa	1	1	B.1.398	0.002976
ORF7a	38	G38X	Gga	Tga	1	1	B.1.400	0.000429
ORF7a	38	G38V	gGa	gTa	1	1	B.1.400	0.000429
ORF7a	38	G38V	gGa	gTa	1	1	B.1.400.1	0.015152
ORF7a	38	G38V	gGa	gTa	1	1	B.1.402	0.009804
ORF7a	38	G38V	gGa	gTa	1	1	B.1.404	0.001302
ORF7a	38	G38X	Gga	Tga	1	1	B.1.411	0.003704
ORF7a	38	G38A	gGa	gCa	1	1	B.1.422	0.000812
ORF7a	38	G38G	ggA	ggC	1	1	B.1.427	0.00005
ORF7a	38	G38del	GGA	---	1	1	B.1.427	0.00005
ORF7a	38	G38G	ggA	ggC	1	1	B.1.429	0.000024
ORF7a	38	G38V	gGa	gTa	1	1	B.1.438	0.006536
ORF7a	38	G38del	GGA	---	1	1	B.1.438.1	0.000107
ORF7a	38	G38del	GGA	---	1	1	B.1.459	0.004082
ORF7a	38	G38A	gGa	gCa	1	1	B.1.462	0.007246
ORF7a	38	G38E	gGa	gAa	1	1	B.1.465	0.003802
ORF7a	38	G38del	GGA	---	1	1	B.1.466.2	0.000391
ORF7a	38	G38V	gGa	gTa	1	1	B.1.467	0.04
ORF7a	38	G38del	GGA	---	1	1	B.1.468	0.005714
ORF7a	38	G38V	gGa	gTa	1	1	B.1.468	0.005714
ORF7a	38	G38del	GGA	---	1	1	B.1.470	0.001404
ORF7a	38	G38V	gGa	gTa	1	1	B.1.495	0.009091
ORF7a	38	G38G	ggA	ggC	1	1	B.1.497	0.000315
ORF7a	38	G38V	gGa	gTa	1	1	B.1.497	0.000315
ORF7a	38	G38V	gGa	gTa	1	1	B.1.499	0.00105
ORF7a	38	G38A	gGa	gCa	1	1	B.1.509	0.000866
ORF7a	38	G38V	gGa	gTa	1	1	B.1.509	0.000866
ORF7a	38	G38X	Gga	Tga	1	1	B.1.515	0.014493
ORF7a	38	G38V	gGa	gTa	1	1	B.1.515	0.014493
ORF7a	38	G38X	Gga	Tga	1	1	B.1.517	0.000427
ORF7a	38	G38E	gGa	gAa	1	1	B.1.525	0.000113
ORF7a	38	G38A	gGa	gCa	1	1	B.1.525	0.000113
ORF7a	38	G38D	gGA	gAT	1	1	B.1.526	0.000024
ORF7a	38	G38E	gGa	gAa	1	1	B.1.526	0.000024
ORF7a	38	G38X	Gga	Tga	1	1	B.1.532	0.006211
ORF7a	38	G38del1	ggA	gg-	1	1	B.1.535	0.028571
ORF7a	38	G38V	gGa	gTa	1	1	B.1.538	0.008065
ORF7a	38	G38V	gGa	gTa	1	1	B.1.551	0.00129
ORF7a	38	G38G	ggA	ggC	1	1	B.1.551	0.00129
ORF7a	38	G38A	gGa	gCa	1	1	B.1.564	0.000426
ORF7a	38	G38G	ggA	ggG	1	1	B.1.568	0.001111
ORF7a	38	G38del1	ggA	gg-	1	1	B.1.582	0.000491
ORF7a	38	G38G	ggA	ggC	1	1	B.1.595	0.000261
ORF7a	38	G38X	Gga	Tga	1	1	B.1.595	0.000261
ORF7a	38	G38V	gGa	gTa	1	1	B.1.595	0.000261
ORF7a	38	G38V	gGa	gTa	1	1	B.1.595.1	0.005848
ORF7a	38	G38del	GGA	---	1	1	B.1.596	0.000087
ORF7a	38	G38E	gGa	gAa	1	1	B.1.596	0.000087
ORF7a	38	G38V	gGA	gTT	1	1	B.1.609	0.000479
ORF7a	38	G38E	gGa	gAa	1	1	B.1.609	0.000479
ORF7a	38	G38R	Gga	Cga	1	1	B.1.609	0.000479
ORF7a	38	G38X	Gga	Tga	1	1	B.1.617.1	0.000129
ORF7a	38	G38del	GGA	---	1	1	B.1.617.3	0.002985
ORF7a	38	G38R	Gga	Aga	1	1	B.1.617.3	0.002985
ORF7a	38	G38del	GGA	---	1	1	B.1.620	0.000946
ORF7a	38	G38V	gGa	gTa	1	1	B.1.620	0.000946
ORF7a	38	G38R	Gga	Aga	1	1	B.1.621	0.000089
ORF7a	38	G38V	gGa	gTa	1	1	B.1.623	0.000536
ORF7a	38	G38V	gGa	gTa	1	1	B.1.625	0.002353
ORF7a	38	G38V	gGa	gTa	1	1	B.1.628	0.000352
ORF7a	38	G38G	ggA	ggC	1	1	B.1.629	0.013333
ORF7a	38	G38del	GGA	---	1	1	B.1.630	0.005236
ORF7a	38	G38del	GGA	---	1	1	B.1.636	0.006711
ORF7a	38	G38A	gGa	gCa	1	1	B.1.637	0.000073
ORF7a	38	G38del2	gGA	g--	1	1	B.1.637	0.000073
ORF7a	38	G38R	Gga	Cga	1	1	B.1.637	0.000073
ORF7a	38	G38V	gGa	gTa	1	1	B.40	0.000364
ORF7a	38	G38V	gGa	gTa	1	1	C.1	0.002392
ORF7a	38	G38V	gGa	gTa	1	1	C.36.3	0.000567
ORF7a	38	G38X	Gga	Tga	1	1	C.36.3	0.000567
ORF7a	38	G38V	gGa	gTa	1	1	C.4	0.01
ORF7a	38	G38R	Gga	Cga	1	1	D.2	0.000075
ORF7a	38	G38V	gGa	gTa	1	1	D.3	0.005917
ORF7a	38	G38V	gGa	gTa	1	1	N.3	0.005814
ORF7a	38	G38A	gGa	gCa	1	1	N.9	0.005952
ORF7a	38	G38G	ggA	ggC	1	1	P.1.1	0.000318
ORF7a	38	G38V	gGa	gTa	1	1	P.1.10	0.000269
ORF7a	38	G38X	Gga	Tga	1	1	P.1.12	0.000484
ORF7a	38	G38V	gGa	gTa	1	1	P.1.12	0.000484
ORF7a	38	G38del	GGA	---	1	1	P.1.15	0.000232
ORF7a	38	G38X	Gga	Tga	1	1	P.1.15	0.000232
ORF7a	38	G38V	gGa	gTa	1	1	P.1.5	0.076923
ORF7a	38	G38E	gGa	gAa	1	1	P.1.7	0.000319
ORF7a	38	G38G	ggA	ggC	1	1	P.1.7	0.000319
ORF7a	38	G38G	ggA	ggC	1	1	P.2	0.000187
ORF7a	38	G38V	gGa	gTa	1	1	P.2	0.000187
ORF7a	38	G38R	Gga	Aga	1	1	Q.1	0.000126
ORF7a	38	G38X	Gga	Tga	1	1	Q.1	0.000126
ORF7a	38	G38E	gGa	gAa	1	1	Q.1	0.000126
ORF7a	38	G38V	gGa	gTa	1	1	Q.3	0.000145
ORF7a	38	G38X	Gga	Tga	1	1	Q.3	0.000145
ORF7a	38	G38E	gGa	gAa	1	1	Q.8	0.000165
ORF7a	38	G38G	ggA	ggG	1	1	Q.8	0.000165
ORF7a	38	G38A	gGa	gCa	1	1	Q.8	0.000165
ORF7a	38	G38A	gGa	gCa	1	1	R.1	0.00009
ORF7a	38	G38E	gGa	gAa	1	1	R.1	0.00009
ORF7a	38	G38X	Gga	Tga	1	1	R.1	0.00009
ORF7a	38	G38V	gGa	gTa	1	1	S.1	0.00495
ORF7a	38	G38A	gGa	gCa	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.