CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 37 | S37F | nonsyn | tCt | tTt | 5302 | 5301 | 0.999811 | 27502-27504 | |
ORF7a | 37 | S37F | nonsyn | tCT | tTC | 5302 | 1 | 0.000188608 | 27502-27504 | |
ORF7a | 37 | S37del | del | TCT | --- | 1690 | 1690 | 1 | 27502-27504 | |
ORF7a | 37 | S37S | syn | tcT | tcC | 784 | 465 | 0.593112 | 27502-27504 | |
ORF7a | 37 | S37S | syn | tcT | tcA | 784 | 275 | 0.350765 | 27502-27504 | |
ORF7a | 37 | S37S | syn | tcT | tcG | 784 | 44 | 0.0561224 | 27502-27504 | |
ORF7a | 37 | S37P | nonsyn | Tct | Cct | 313 | 313 | 1 | 27502-27504 | |
ORF7a | 37 | S37C | nonsyn | tCt | tGt | 175 | 175 | 1 | 27502-27504 | |
ORF7a | 37 | S37Y | nonsyn | tCt | tAt | 144 | 135 | 0.9375 | 27502-27504 | |
ORF7a | 37 | S37Y | nonsyn | tCT | tAC | 144 | 9 | 0.0625 | 27502-27504 | |
ORF7a | 37 | S37A | nonsyn | Tct | Gct | 104 | 104 | 1 | 27502-27504 | |
ORF7a | 37 | S37T | nonsyn | Tct | Act | 33 | 33 | 1 | 27502-27504 | |
ORF7a | 37 | S37del1 | del | tcT | tc- | 32 | 14 | 0.4375 | 27502-27504 | |
ORF7a | 37 | S37del1 | del | TcT | Cc- | 32 | 13 | 0.40625 | 27502-27504 | |
ORF7a | 37 | S37del1 | del | tCt | t-t | 32 | 2 | 0.0625 | 27502-27504 | |
ORF7a | 37 | S37del1 | del | TCT | -NN | 32 | 1 | 0.03125 | 27502-27504 | |
ORF7a | 37 | S37del1 | del | Tct | -ct | 32 | 1 | 0.03125 | 27502-27504 | |
ORF7a | 37 | S37del1 | del | tCT | tT- | 32 | 1 | 0.03125 | 27502-27504 | |
ORF7a | 37 | S37K | nonsyn | TCT | AAA | 30 | 30 | 1 | 27502-27504 | |
ORF7a | 37 | S37del2 | del | tCT | t-- | 25 | 24 | 0.96 | 27502-27504 | |
ORF7a | 37 | S37del2 | del | TCT | --N | 25 | 1 | 0.04 | 27502-27504 | |
ORF7a | 37 | S37L | nonsyn | tCT | tTA | 3 | 2 | 0.666667 | 27502-27504 | |
ORF7a | 37 | S37L | nonsyn | tCT | tTG | 3 | 1 | 0.333333 | 27502-27504 | |
ORF7a | 37 | S37V | nonsyn | TCt | GTt | 2 | 2 | 1 | 27502-27504 | |
ORF7a | 37 | S37X | nonsyn | tCT | tAA | 2 | 2 | 1 | 27502-27504 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 37 | S37F | tCt | tTt | 5301 | 5302 | All | 0.001014 |
ORF7a | 37 | S37F | tCT | tTC | 1 | 5302 | All | 0 |
ORF7a | 37 | S37F | tCt | tTt | 3235 | 3235 | B.1.1.7 | 0.002896 |
ORF7a | 37 | S37del | TCT | --- | 1690 | 1690 | All | 0.000323 |
ORF7a | 37 | S37S | tcT | tcC | 465 | 784 | All | 0.000089 |
ORF7a | 37 | S37S | tcT | tcA | 275 | 784 | All | 0.000053 |
ORF7a | 37 | S37S | tcT | tcG | 44 | 784 | All | 0.000008 |
ORF7a | 37 | S37del | TCT | --- | 335 | 335 | AY.4 | 0.000521 |
ORF7a | 37 | S37P | Tct | Cct | 313 | 313 | All | 0.00006 |
ORF7a | 37 | S37del | TCT | --- | 311 | 311 | B.1.1.7 | 0.000278 |
ORF7a | 37 | S37F | tCt | tTt | 264 | 264 | AY.4 | 0.000411 |
ORF7a | 37 | S37P | Tct | Cct | 218 | 218 | B.1.1.7 | 0.000195 |
ORF7a | 37 | S37del | TCT | --- | 199 | 199 | B.1.617.2 | 0.000749 |
ORF7a | 37 | S37del | TCT | --- | 179 | 179 | B.1.177.21 | 0.013688 |
ORF7a | 37 | S37C | tCt | tGt | 175 | 175 | All | 0.000033 |
ORF7a | 37 | S37F | tCt | tTt | 157 | 157 | B.1.617.2 | 0.000591 |
ORF7a | 37 | S37F | tCt | tTt | 146 | 146 | AY.103 | 0.000907 |
ORF7a | 37 | S37Y | tCt | tAt | 135 | 144 | All | 0.000026 |
ORF7a | 37 | S37Y | tCT | tAC | 9 | 144 | All | 0.000002 |
ORF7a | 37 | S37F | tCt | tTt | 141 | 141 | B.1.177.12 | 0.02139 |
ORF7a | 37 | S37S | tcT | tcA | 84 | 139 | B.1.1.7 | 0.000075 |
ORF7a | 37 | S37S | tcT | tcC | 49 | 139 | B.1.1.7 | 0.000044 |
ORF7a | 37 | S37S | tcT | tcG | 6 | 139 | B.1.1.7 | 0.000005 |
ORF7a | 37 | S37del | TCT | --- | 126 | 126 | AY.25 | 0.000758 |
ORF7a | 37 | S37F | tCt | tTt | 115 | 115 | AY.43 | 0.00051 |
ORF7a | 37 | S37S | tcT | tcC | 101 | 111 | B.1.351 | 0.003002 |
ORF7a | 37 | S37S | tcT | tcA | 10 | 111 | B.1.351 | 0.000297 |
ORF7a | 37 | S37C | tCt | tGt | 107 | 107 | AY.91 | 0.078159 |
ORF7a | 37 | S37A | Tct | Gct | 104 | 104 | All | 0.00002 |
ORF7a | 37 | S37F | tCt | tTt | 85 | 85 | AY.119 | 0.003001 |
ORF7a | 37 | S37F | tCt | tTt | 82 | 82 | AY.3.1 | 0.006991 |
ORF7a | 37 | S37S | tcT | tcC | 59 | 60 | AY.103 | 0.000366 |
ORF7a | 37 | S37S | tcT | tcA | 1 | 60 | AY.103 | 0.000006 |
ORF7a | 37 | S37del | TCT | --- | 57 | 57 | AY.103 | 0.000354 |
ORF7a | 37 | S37F | tCt | tTt | 56 | 56 | B.1.2 | 0.000493 |
ORF7a | 37 | S37F | tCt | tTt | 49 | 49 | AY.44 | 0.000298 |
ORF7a | 37 | S37S | tcT | tcC | 24 | 46 | AY.4 | 0.000037 |
ORF7a | 37 | S37S | tcT | tcA | 22 | 46 | AY.4 | 0.000034 |
ORF7a | 37 | S37del | TCT | --- | 45 | 45 | AY.3 | 0.000448 |
ORF7a | 37 | S37del | TCT | --- | 43 | 43 | AY.29 | 0.000678 |
ORF7a | 37 | S37S | tcT | tcC | 43 | 43 | B.1.1.500 | 0.86 |
ORF7a | 37 | S37del | TCT | --- | 39 | 39 | AY.44 | 0.000237 |
ORF7a | 37 | S37S | tcT | tcC | 24 | 38 | B.1.617.2 | 0.00009 |
ORF7a | 37 | S37S | tcT | tcA | 8 | 38 | B.1.617.2 | 0.00003 |
ORF7a | 37 | S37S | tcT | tcG | 6 | 38 | B.1.617.2 | 0.000023 |
ORF7a | 37 | S37F | tCt | tTt | 36 | 36 | B.1 | 0.00033 |
ORF7a | 37 | S37F | tCt | tTt | 34 | 34 | AY.100 | 0.001564 |
ORF7a | 37 | S37T | Tct | Act | 33 | 33 | All | 0.000006 |
ORF7a | 37 | S37F | tCt | tTt | 33 | 33 | AY.33 | 0.002204 |
ORF7a | 37 | S37del1 | tcT | tc- | 14 | 32 | All | 0.000003 |
ORF7a | 37 | S37del1 | TcT | Cc- | 13 | 32 | All | 0.000002 |
ORF7a | 37 | S37del1 | tCt | t-t | 2 | 32 | All | 0 |
ORF7a | 37 | S37del1 | tCT | tT- | 1 | 32 | All | 0 |
ORF7a | 37 | S37del1 | Tct | -ct | 1 | 32 | All | 0 |
ORF7a | 37 | S37del1 | TCT | -NN | 1 | 32 | All | 0 |
ORF7a | 37 | S37F | tCt | tTt | 32 | 32 | P.1 | 0.000504 |
ORF7a | 37 | S37K | TCT | AAA | 30 | 30 | All | 0.000006 |
ORF7a | 37 | S37F | tCt | tTt | 30 | 30 | AY.39 | 0.000741 |
ORF7a | 37 | S37F | tCt | tTt | 30 | 30 | B.1.525 | 0.003395 |
ORF7a | 37 | S37S | tcT | tcA | 26 | 28 | AY.3.1 | 0.002217 |
ORF7a | 37 | S37S | tcT | tcG | 2 | 28 | AY.3.1 | 0.000171 |
ORF7a | 37 | S37Y | tCt | tAt | 20 | 28 | B.1.1.7 | 0.000018 |
ORF7a | 37 | S37Y | tCT | tAC | 8 | 28 | B.1.1.7 | 0.000007 |
ORF7a | 37 | S37A | Tct | Gct | 28 | 28 | B.1.2 | 0.000247 |
ORF7a | 37 | S37A | Tct | Gct | 27 | 27 | B.1.1.7 | 0.000024 |
ORF7a | 37 | S37F | tCt | tTt | 27 | 27 | B.1.399 | 0.052224 |
ORF7a | 37 | S37F | tCt | tTt | 27 | 27 | D.2 | 0.002026 |
ORF7a | 37 | S37F | tCt | tTt | 26 | 26 | AY.101 | 0.012751 |
ORF7a | 37 | S37F | tCt | tTt | 26 | 26 | AY.3 | 0.000259 |
ORF7a | 37 | S37F | tCt | tTt | 26 | 26 | AY.70 | 0.005421 |
ORF7a | 37 | S37del2 | tCT | t-- | 24 | 25 | All | 0.000005 |
ORF7a | 37 | S37del2 | TCT | --N | 1 | 25 | All | 0 |
ORF7a | 37 | S37S | tcT | tcA | 25 | 25 | B.1.526 | 0.000588 |
ORF7a | 37 | S37F | tCt | tTt | 24 | 24 | AY.29 | 0.000379 |
ORF7a | 37 | S37S | tcT | tcA | 18 | 23 | B.1.2 | 0.000158 |
ORF7a | 37 | S37S | tcT | tcC | 4 | 23 | B.1.2 | 0.000035 |
ORF7a | 37 | S37S | tcT | tcG | 1 | 23 | B.1.2 | 0.000009 |
ORF7a | 37 | S37F | tCt | tTt | 23 | 23 | B.1.351 | 0.000684 |
ORF7a | 37 | S37F | tCt | tTt | 22 | 22 | AY.102 | 0.000583 |
ORF7a | 37 | S37P | Tct | Cct | 22 | 22 | B.1.351 | 0.000654 |
ORF7a | 37 | S37F | tCt | tTt | 22 | 22 | C.37 | 0.002553 |
ORF7a | 37 | S37del | TCT | --- | 21 | 21 | AY.43 | 0.000093 |
ORF7a | 37 | S37del | TCT | --- | 21 | 21 | B.1.1.214 | 0.001165 |
ORF7a | 37 | S37del | TCT | --- | 21 | 21 | U.1 | 0.269231 |
ORF7a | 37 | S37S | tcT | tcA | 11 | 20 | B.1 | 0.000101 |
ORF7a | 37 | S37S | tcT | tcC | 9 | 20 | B.1 | 0.000082 |
ORF7a | 37 | S37F | tCt | tTt | 20 | 20 | B.1.1 | 0.000363 |
ORF7a | 37 | S37F | tCt | tTt | 18 | 18 | AY.25 | 0.000108 |
ORF7a | 37 | S37S | tcT | tcC | 17 | 18 | B.1.177 | 0.000224 |
ORF7a | 37 | S37S | tcT | tcG | 1 | 18 | B.1.177 | 0.000013 |
ORF7a | 37 | S37Y | tCt | tAt | 18 | 18 | B.1.399 | 0.034816 |
ORF7a | 37 | S37F | tCt | tTt | 18 | 18 | B.1.526 | 0.000423 |
ORF7a | 37 | S37F | tCt | tTt | 17 | 17 | AY.26 | 0.000481 |
ORF7a | 37 | S37F | tCt | tTt | 17 | 17 | AY.4.2 | 0.000369 |
ORF7a | 37 | S37S | tcT | tcC | 16 | 17 | AY.44 | 0.000097 |
ORF7a | 37 | S37S | tcT | tcG | 1 | 17 | AY.44 | 0.000006 |
ORF7a | 37 | S37del | TCT | --- | 17 | 17 | AY.7.2 | 0.009508 |
ORF7a | 37 | S37F | tCt | tTt | 17 | 17 | B.1.429 | 0.0004 |
ORF7a | 37 | S37S | tcT | tcG | 17 | 17 | B.1.525 | 0.001924 |
ORF7a | 37 | S37F | tCt | tTt | 17 | 17 | B.1.637 | 0.001242 |
ORF7a | 37 | S37F | tCt | tTt | 16 | 16 | AY.20 | 0.000622 |
ORF7a | 37 | S37del | TCT | --- | 16 | 16 | AY.3.1 | 0.001364 |
ORF7a | 37 | S37del2 | tCT | t-- | 15 | 16 | AY.4 | 0.000023 |
ORF7a | 37 | S37del2 | TCT | --N | 1 | 16 | AY.4 | 0.000002 |
ORF7a | 37 | S37C | tCt | tGt | 16 | 16 | B.1.1.7 | 0.000014 |
ORF7a | 37 | S37T | Tct | Act | 16 | 16 | B.3.1 | 0.026534 |
ORF7a | 37 | S37A | Tct | Gct | 15 | 15 | AY.45 | 0.001825 |
ORF7a | 37 | S37F | tCt | tTt | 15 | 15 | B.1.177 | 0.000198 |
ORF7a | 37 | S37S | tcT | tcC | 15 | 15 | P.1.12 | 0.00726 |
ORF7a | 37 | S37del1 | TcT | Cc- | 13 | 14 | AY.103 | 0.000081 |
ORF7a | 37 | S37del1 | tCT | tT- | 1 | 14 | AY.103 | 0.000006 |
ORF7a | 37 | S37F | tCt | tTt | 14 | 14 | AY.120 | 0.000521 |
ORF7a | 37 | S37C | tCt | tGt | 14 | 14 | AY.4 | 0.000022 |
ORF7a | 37 | S37K | TCT | AAA | 14 | 14 | B.1.1.7 | 0.000013 |
ORF7a | 37 | S37del | TCT | --- | 14 | 14 | C.37 | 0.001625 |
ORF7a | 37 | S37S | tcT | tcC | 13 | 13 | AY.3 | 0.000129 |
ORF7a | 37 | S37del | TCT | --- | 13 | 13 | AY.39 | 0.000321 |
ORF7a | 37 | S37Y | tCt | tAt | 13 | 13 | AY.4 | 0.00002 |
ORF7a | 37 | S37Y | tCt | tAt | 13 | 13 | B.1 | 0.000119 |
ORF7a | 37 | S37S | tcT | tcC | 10 | 13 | B.1.258 | 0.000665 |
ORF7a | 37 | S37S | tcT | tcA | 3 | 13 | B.1.258 | 0.0002 |
ORF7a | 37 | S37F | tCt | tTt | 13 | 13 | B.1.631 | 0.043771 |
ORF7a | 37 | S37F | tCt | tTt | 12 | 12 | B.1.160 | 0.000374 |
ORF7a | 37 | S37F | tCt | tTt | 12 | 12 | B.1.240 | 0.002587 |
ORF7a | 37 | S37F | tCt | tTt | 12 | 12 | B.1.243 | 0.000835 |
ORF7a | 37 | S37del | TCT | --- | 11 | 11 | B.1 | 0.000101 |
ORF7a | 37 | S37F | tCt | tTt | 11 | 11 | B.1.177.81 | 0.002083 |
ORF7a | 37 | S37K | TCT | AAA | 10 | 10 | AY.4 | 0.000016 |
ORF7a | 37 | S37S | tcT | tcA | 5 | 10 | AY.43 | 0.000022 |
ORF7a | 37 | S37S | tcT | tcC | 3 | 10 | AY.43 | 0.000013 |
ORF7a | 37 | S37S | tcT | tcG | 2 | 10 | AY.43 | 0.000009 |
ORF7a | 37 | S37F | tCt | tTt | 10 | 10 | AY.88 | 0.008842 |
ORF7a | 37 | S37del | TCT | --- | 10 | 10 | B.1.2 | 0.000088 |
ORF7a | 37 | S37S | tcT | tcA | 10 | 10 | B.1.582 | 0.004907 |
ORF7a | 37 | S37S | tcT | tcC | 8 | 9 | B.1.1 | 0.000145 |
ORF7a | 37 | S37S | tcT | tcA | 1 | 9 | B.1.1 | 0.000018 |
ORF7a | 37 | S37del | TCT | --- | 9 | 9 | B.1.1.284 | 0.000967 |
ORF7a | 37 | S37F | tCt | tTt | 9 | 9 | B.1.1.519 | 0.000357 |
ORF7a | 37 | S37del | TCT | --- | 9 | 9 | P.1 | 0.000142 |
ORF7a | 37 | S37S | tcT | tcA | 6 | 9 | P.1 | 0.000095 |
ORF7a | 37 | S37S | tcT | tcC | 3 | 9 | P.1 | 0.000047 |
ORF7a | 37 | S37F | tCt | tTt | 9 | 9 | Q.1 | 0.001137 |
ORF7a | 37 | S37Y | tCt | tAt | 8 | 8 | AY.120 | 0.000297 |
ORF7a | 37 | S37del | TCT | --- | 8 | 8 | AY.23 | 0.000558 |
ORF7a | 37 | S37S | tcT | tcA | 6 | 8 | AY.25 | 0.000036 |
ORF7a | 37 | S37S | tcT | tcC | 2 | 8 | AY.25 | 0.000012 |
ORF7a | 37 | S37del | TCT | --- | 8 | 8 | AY.47 | 0.000249 |
ORF7a | 37 | S37F | tCt | tTt | 8 | 8 | AY.61 | 0.000838 |
ORF7a | 37 | S37F | tCt | tTt | 8 | 8 | B.1.617.1 | 0.001032 |
ORF7a | 37 | S37F | tCt | tTt | 8 | 8 | Q.3 | 0.00116 |
ORF7a | 37 | S37del | TCT | --- | 7 | 7 | AY.20 | 0.000272 |
ORF7a | 37 | S37del1 | tcT | tc- | 7 | 7 | B.1.525 | 0.000792 |
ORF7a | 37 | S37del | TCT | --- | 6 | 6 | AY.100 | 0.000276 |
ORF7a | 37 | S37F | tCt | tTt | 6 | 6 | AY.117 | 0.000507 |
ORF7a | 37 | S37del | TCT | --- | 6 | 6 | AY.26 | 0.00017 |
ORF7a | 37 | S37F | tCt | tTt | 6 | 6 | AY.34 | 0.000582 |
ORF7a | 37 | S37Y | tCt | tAt | 6 | 6 | AY.43 | 0.000027 |
ORF7a | 37 | S37F | tCt | tTt | 6 | 6 | AY.57 | 0.003937 |
ORF7a | 37 | S37S | tcT | tcC | 6 | 6 | B.1.160.30 | 0.017857 |
ORF7a | 37 | S37del | TCT | --- | 6 | 6 | B.1.177 | 0.000079 |
ORF7a | 37 | S37F | tCt | tTt | 6 | 6 | B.1.177.21 | 0.000459 |
ORF7a | 37 | S37del | TCT | --- | 6 | 6 | B.1.177.44 | 0.003114 |
ORF7a | 37 | S37P | Tct | Cct | 6 | 6 | B.1.2 | 0.000053 |
ORF7a | 37 | S37F | tCt | tTt | 6 | 6 | B.1.561 | 0.002382 |
ORF7a | 37 | S37F | tCt | tTt | 6 | 6 | Q.8 | 0.000989 |
ORF7a | 37 | S37F | tCt | tTt | 5 | 5 | AY.23 | 0.000349 |
ORF7a | 37 | S37S | tcT | tcC | 4 | 5 | AY.39 | 0.000099 |
ORF7a | 37 | S37S | tcT | tcA | 1 | 5 | AY.39 | 0.000025 |
ORF7a | 37 | S37F | tCt | tTt | 5 | 5 | AY.39.1 | 0.000198 |
ORF7a | 37 | S37F | tCt | tTt | 5 | 5 | AY.40 | 0.004822 |
ORF7a | 37 | S37F | tCt | tTt | 5 | 5 | AY.5 | 0.000103 |
ORF7a | 37 | S37F | tCt | tTt | 5 | 5 | AY.98.1 | 0.000242 |
ORF7a | 37 | S37del | TCT | --- | 5 | 5 | B.1.1.56 | 0.089286 |
ORF7a | 37 | S37del | TCT | --- | 5 | 5 | B.1.429 | 0.000118 |
ORF7a | 37 | S37del | TCT | --- | 5 | 5 | B.1.526 | 0.000118 |
ORF7a | 37 | S37P | Tct | Cct | 5 | 5 | B.1.617.2 | 0.000019 |
ORF7a | 37 | S37del | TCT | --- | 5 | 5 | B.1.637 | 0.000365 |
ORF7a | 37 | S37F | tCt | tTt | 5 | 5 | C.38 | 0.040323 |
ORF7a | 37 | S37F | tCt | tTt | 5 | 5 | P.1.15 | 0.001162 |
ORF7a | 37 | S37S | tcT | tcC | 4 | 4 | AY.102 | 0.000106 |
ORF7a | 37 | S37P | Tct | Cct | 4 | 4 | AY.103 | 0.000025 |
ORF7a | 37 | S37A | Tct | Gct | 4 | 4 | AY.103 | 0.000025 |
ORF7a | 37 | S37F | tCt | tTt | 4 | 4 | AY.113 | 0.00057 |
ORF7a | 37 | S37F | tCt | tTt | 4 | 4 | AY.116 | 0.001147 |
ORF7a | 37 | S37S | tcT | tcC | 4 | 4 | AY.119 | 0.000141 |
ORF7a | 37 | S37del | TCT | --- | 4 | 4 | AY.121 | 0.000541 |
ORF7a | 37 | S37Y | tCt | tAt | 4 | 4 | AY.20 | 0.000155 |
ORF7a | 37 | S37Y | tCt | tAt | 4 | 4 | AY.26 | 0.000113 |
ORF7a | 37 | S37P | Tct | Cct | 4 | 4 | AY.4 | 0.000006 |
ORF7a | 37 | S37del | TCT | --- | 4 | 4 | AY.4.2 | 0.000087 |
ORF7a | 37 | S37F | tCt | tTt | 4 | 4 | AY.4.5 | 0.00043 |
ORF7a | 37 | S37P | Tct | Cct | 4 | 4 | AY.44 | 0.000024 |
ORF7a | 37 | S37C | tCt | tGt | 4 | 4 | AY.44 | 0.000024 |
ORF7a | 37 | S37F | tCt | tTt | 4 | 4 | AY.46 | 0.000416 |
ORF7a | 37 | S37P | Tct | Cct | 4 | 4 | AY.46.6 | 0.000289 |
ORF7a | 37 | S37S | tcT | tcC | 4 | 4 | AY.50 | 0.003197 |
ORF7a | 37 | S37F | tCt | tTt | 4 | 4 | AY.6 | 0.000165 |
ORF7a | 37 | S37S | tcT | tcA | 2 | 4 | AY.6 | 0.000082 |
ORF7a | 37 | S37S | tcT | tcG | 2 | 4 | AY.6 | 0.000082 |
ORF7a | 37 | S37F | tCt | tTt | 4 | 4 | AY.9.2 | 0.000147 |
ORF7a | 37 | S37del | TCT | --- | 4 | 4 | AY.98.1 | 0.000194 |
ORF7a | 37 | S37C | tCt | tGt | 4 | 4 | B.1 | 0.000037 |
ORF7a | 37 | S37Y | tCt | tAt | 4 | 4 | B.1.1 | 0.000073 |
ORF7a | 37 | S37T | Tct | Act | 4 | 4 | B.1.1.28 | 0.001245 |
ORF7a | 37 | S37F | tCt | tTt | 4 | 4 | B.1.1.521 | 0.02139 |
ORF7a | 37 | S37F | tCt | tTt | 4 | 4 | B.1.258 | 0.000266 |
ORF7a | 37 | S37F | tCt | tTt | 4 | 4 | B.1.258.22 | 0.010667 |
ORF7a | 37 | S37F | tCt | tTt | 4 | 4 | B.1.36.8 | 0.004 |
ORF7a | 37 | S37S | tcT | tcA | 4 | 4 | B.1.398 | 0.011905 |
ORF7a | 37 | S37A | Tct | Gct | 4 | 4 | B.1.409 | 0.003125 |
ORF7a | 37 | S37S | tcT | tcA | 4 | 4 | B.1.429 | 0.000094 |
ORF7a | 37 | S37F | tCt | tTt | 4 | 4 | B.1.621 | 0.000354 |
ORF7a | 37 | S37P | Tct | Cct | 4 | 4 | B.1.637 | 0.000292 |
ORF7a | 37 | S37P | Tct | Cct | 3 | 3 | A | 0.001161 |
ORF7a | 37 | S37L | tCT | tTA | 2 | 3 | All | 0 |
ORF7a | 37 | S37L | tCT | tTG | 1 | 3 | All | 0 |
ORF7a | 37 | S37Y | tCt | tAt | 3 | 3 | AY.102 | 0.00008 |
ORF7a | 37 | S37Y | tCt | tAt | 3 | 3 | AY.103 | 0.000019 |
ORF7a | 37 | S37del | TCT | --- | 3 | 3 | AY.106 | 0.001005 |
ORF7a | 37 | S37S | tcT | tcC | 2 | 3 | AY.117 | 0.000169 |
ORF7a | 37 | S37S | tcT | tcA | 1 | 3 | AY.117 | 0.000085 |
ORF7a | 37 | S37del | TCT | --- | 3 | 3 | AY.118 | 0.000188 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | AY.118 | 0.000188 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | AY.14 | 0.000264 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | AY.16 | 0.001139 |
ORF7a | 37 | S37S | tcT | tcC | 3 | 3 | AY.26 | 0.000085 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | AY.27 | 0.000194 |
ORF7a | 37 | S37P | Tct | Cct | 3 | 3 | AY.3 | 0.00003 |
ORF7a | 37 | S37C | tCt | tGt | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF7a | 37 | S37del | TCT | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF7a | 37 | S37del | TCT | --- | 3 | 3 | AY.42 | 0.000121 |
ORF7a | 37 | S37A | Tct | Gct | 3 | 3 | AY.44 | 0.000018 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | AY.46.6 | 0.000217 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | AY.5.4 | 0.00083 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | AY.74 | 0.000347 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | AY.9.1 | 0.000251 |
ORF7a | 37 | S37C | tCt | tGt | 3 | 3 | AY.94 | 0.001328 |
ORF7a | 37 | S37S | tcT | tcG | 3 | 3 | AY.98.1 | 0.000145 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | AY.99.2 | 0.000276 |
ORF7a | 37 | S37P | Tct | Cct | 3 | 3 | B.1 | 0.000027 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | B.1.1.207 | 0.003546 |
ORF7a | 37 | S37del | TCT | --- | 3 | 3 | B.1.1.25 | 0.001706 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | B.1.1.318 | 0.000905 |
ORF7a | 37 | S37del1 | tcT | tc- | 2 | 3 | B.1.1.7 | 0.000002 |
ORF7a | 37 | S37del1 | tCt | t-t | 1 | 3 | B.1.1.7 | 0.000001 |
ORF7a | 37 | S37S | tcT | tcC | 2 | 3 | B.1.160 | 0.000062 |
ORF7a | 37 | S37S | tcT | tcA | 1 | 3 | B.1.160 | 0.000031 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | B.1.160.17 | 0.005102 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | B.1.177.73 | 0.001699 |
ORF7a | 37 | S37C | tCt | tGt | 3 | 3 | B.1.2 | 0.000026 |
ORF7a | 37 | S37del | TCT | --- | 3 | 3 | B.1.234 | 0.000396 |
ORF7a | 37 | S37del | TCT | --- | 3 | 3 | B.1.351 | 0.000089 |
ORF7a | 37 | S37P | Tct | Cct | 3 | 3 | B.1.429 | 0.000071 |
ORF7a | 37 | S37Y | tCt | tAt | 3 | 3 | B.1.617.2 | 0.000011 |
ORF7a | 37 | S37S | tcT | tcA | 2 | 3 | B.1.621 | 0.000177 |
ORF7a | 37 | S37S | tcT | tcC | 1 | 3 | B.1.621 | 0.000089 |
ORF7a | 37 | S37del | TCT | --- | 3 | 3 | B.1.626 | 0.017143 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | N.4 | 0.012766 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | P.1.14 | 0.000143 |
ORF7a | 37 | S37F | tCt | tTt | 3 | 3 | P.1.17 | 0.000485 |
ORF7a | 37 | S37del | TCT | --- | 3 | 3 | Q.8 | 0.000495 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | A | 0.000774 |
ORF7a | 37 | S37del | TCT | --- | 2 | 2 | A.28 | 0.005291 |
ORF7a | 37 | S37X | tCT | tAA | 2 | 2 | All | 0 |
ORF7a | 37 | S37V | TCt | GTt | 2 | 2 | All | 0 |
ORF7a | 37 | S37S | tcT | tcA | 2 | 2 | AY.100 | 0.000092 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | AY.114 | 0.000462 |
ORF7a | 37 | S37del | TCT | --- | 2 | 2 | AY.119 | 0.000071 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | AY.12 | 0.000632 |
ORF7a | 37 | S37S | tcT | tcC | 2 | 2 | AY.120 | 0.000074 |
ORF7a | 37 | S37del | TCT | --- | 2 | 2 | AY.120 | 0.000074 |
ORF7a | 37 | S37Y | tCt | tAt | 2 | 2 | AY.120.2 | 0.002571 |
ORF7a | 37 | S37S | tcT | tcC | 1 | 2 | AY.23 | 0.00007 |
ORF7a | 37 | S37S | tcT | tcA | 1 | 2 | AY.23 | 0.00007 |
ORF7a | 37 | S37P | Tct | Cct | 2 | 2 | AY.26 | 0.000057 |
ORF7a | 37 | S37del | TCT | --- | 2 | 2 | AY.29.1 | 0.000441 |
ORF7a | 37 | S37A | Tct | Gct | 2 | 2 | AY.3 | 0.00002 |
ORF7a | 37 | S37S | tcT | tcC | 2 | 2 | AY.33 | 0.000134 |
ORF7a | 37 | S37del | TCT | --- | 2 | 2 | AY.33 | 0.000134 |
ORF7a | 37 | S37Y | tCt | tAt | 2 | 2 | AY.34 | 0.000194 |
ORF7a | 37 | S37del | TCT | --- | 2 | 2 | AY.34 | 0.000194 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | AY.35 | 0.000466 |
ORF7a | 37 | S37Y | tCt | tAt | 2 | 2 | AY.39 | 0.000049 |
ORF7a | 37 | S37C | tCt | tGt | 2 | 2 | AY.39 | 0.000049 |
ORF7a | 37 | S37A | Tct | Gct | 2 | 2 | AY.4 | 0.000003 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | AY.42 | 0.00008 |
ORF7a | 37 | S37P | Tct | Cct | 2 | 2 | AY.43 | 0.000009 |
ORF7a | 37 | S37Y | tCt | tAt | 2 | 2 | AY.44 | 0.000012 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | AY.45 | 0.000243 |
ORF7a | 37 | S37Y | tCt | tAt | 2 | 2 | AY.46 | 0.000208 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | AY.47 | 0.000062 |
ORF7a | 37 | S37del | TCT | --- | 2 | 2 | AY.5 | 0.000041 |
ORF7a | 37 | S37K | TCT | AAA | 2 | 2 | AY.5.3 | 0.000675 |
ORF7a | 37 | S37del | TCT | --- | 2 | 2 | AY.5.3 | 0.000675 |
ORF7a | 37 | S37del2 | tCT | t-- | 2 | 2 | AY.7.2 | 0.001119 |
ORF7a | 37 | S37del | TCT | --- | 2 | 2 | AY.75 | 0.000112 |
ORF7a | 37 | S37del | TCT | --- | 2 | 2 | AY.9 | 0.000135 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | AY.9 | 0.000135 |
ORF7a | 37 | S37S | tcT | tcC | 2 | 2 | AY.9.2 | 0.000073 |
ORF7a | 37 | S37del | TCT | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | B.1.1.214 | 0.000111 |
ORF7a | 37 | S37P | Tct | Cct | 2 | 2 | B.1.1.216 | 0.001781 |
ORF7a | 37 | S37S | tcT | tcC | 2 | 2 | B.1.1.228 | 0.006098 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | B.1.1.25 | 0.001137 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | B.1.1.305 | 0.007722 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | B.1.1.33 | 0.000842 |
ORF7a | 37 | S37S | tcT | tcA | 1 | 2 | B.1.1.519 | 0.00004 |
ORF7a | 37 | S37S | tcT | tcC | 1 | 2 | B.1.1.519 | 0.00004 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | B.1.1.528 | 0.009615 |
ORF7a | 37 | S37S | tcT | tcC | 2 | 2 | B.1.139 | 0.001466 |
ORF7a | 37 | S37Y | tCt | tAt | 2 | 2 | B.1.160 | 0.000062 |
ORF7a | 37 | S37del | TCT | --- | 2 | 2 | B.1.160 | 0.000062 |
ORF7a | 37 | S37P | Tct | Cct | 2 | 2 | B.1.177 | 0.000026 |
ORF7a | 37 | S37C | tCt | tGt | 2 | 2 | B.1.177 | 0.000026 |
ORF7a | 37 | S37del | TCT | --- | 2 | 2 | B.1.177.43 | 0.002954 |
ORF7a | 37 | S37P | Tct | Cct | 2 | 2 | B.1.177.60 | 0.000437 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | B.1.177.7 | 0.00033 |
ORF7a | 37 | S37del | TCT | --- | 2 | 2 | B.1.177.86 | 0.000367 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | B.1.234 | 0.000264 |
ORF7a | 37 | S37del | TCT | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF7a | 37 | S37A | Tct | Gct | 2 | 2 | B.1.258 | 0.000133 |
ORF7a | 37 | S37del | TCT | --- | 2 | 2 | B.1.258.11 | 0.000793 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | B.1.332 | 0.006993 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | B.1.349 | 0.00143 |
ORF7a | 37 | S37del | TCT | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | B.1.375 | 0.001639 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | B.1.427 | 0.000101 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | B.1.575 | 0.000607 |
ORF7a | 37 | S37del | TCT | --- | 2 | 2 | B.1.596 | 0.000174 |
ORF7a | 37 | S37T | Tct | Act | 2 | 2 | B.1.617.2 | 0.000008 |
ORF7a | 37 | S37A | Tct | Gct | 2 | 2 | B.1.617.2 | 0.000008 |
ORF7a | 37 | S37C | tCt | tGt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | B.1.619 | 0.001742 |
ORF7a | 37 | S37Y | tCt | tAt | 2 | 2 | B.1.621 | 0.000177 |
ORF7a | 37 | S37del | TCT | --- | 2 | 2 | C.36.3 | 0.001134 |
ORF7a | 37 | S37T | Tct | Act | 2 | 2 | P.1 | 0.000032 |
ORF7a | 37 | S37S | tcT | tcC | 1 | 2 | P.1.14 | 0.000048 |
ORF7a | 37 | S37S | tcT | tcG | 1 | 2 | P.1.14 | 0.000048 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | P.1.9 | 0.009615 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | Q.4 | 0.00091 |
ORF7a | 37 | S37F | tCt | tTt | 2 | 2 | Q.7 | 0.002222 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | A | 0.000387 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | A.1 | 0.000282 |
ORF7a | 37 | S37S | tcT | tcC | 1 | 1 | A.2 | 0.000662 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AA.7 | 0.009174 |
ORF7a | 37 | S37Y | tCt | tAt | 1 | 1 | AD.2 | 0.000219 |
ORF7a | 37 | S37S | tcT | tcC | 1 | 1 | AD.2 | 0.000219 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.1 | 0.000396 |
ORF7a | 37 | S37C | tCt | tGt | 1 | 1 | AY.100 | 0.000046 |
ORF7a | 37 | S37Y | tCt | tAt | 1 | 1 | AY.100 | 0.000046 |
ORF7a | 37 | S37P | Tct | Cct | 1 | 1 | AY.100 | 0.000046 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | AY.102 | 0.000027 |
ORF7a | 37 | S37P | Tct | Cct | 1 | 1 | AY.102 | 0.000027 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF7a | 37 | S37S | tcT | tcC | 1 | 1 | AY.109 | 0.00074 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | AY.110 | 0.000113 |
ORF7a | 37 | S37del1 | tcT | tc- | 1 | 1 | AY.110 | 0.000113 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | AY.113 | 0.000142 |
ORF7a | 37 | S37K | TCT | AAA | 1 | 1 | AY.116 | 0.000287 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | AY.116.1 | 0.000311 |
ORF7a | 37 | S37Y | tCt | tAt | 1 | 1 | AY.117 | 0.000085 |
ORF7a | 37 | S37P | Tct | Cct | 1 | 1 | AY.118 | 0.000063 |
ORF7a | 37 | S37T | Tct | Act | 1 | 1 | AY.119 | 0.000035 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | AY.12 | 0.000316 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | AY.120.1 | 0.000321 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.120.1 | 0.000321 |
ORF7a | 37 | S37C | tCt | tGt | 1 | 1 | AY.121 | 0.000135 |
ORF7a | 37 | S37Y | tCt | tAt | 1 | 1 | AY.14 | 0.000088 |
ORF7a | 37 | S37C | tCt | tGt | 1 | 1 | AY.14 | 0.000088 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | AY.16.1 | 0.00047 |
ORF7a | 37 | S37C | tCt | tGt | 1 | 1 | AY.16.1 | 0.00047 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.16.1 | 0.00047 |
ORF7a | 37 | S37P | Tct | Cct | 1 | 1 | AY.20 | 0.000039 |
ORF7a | 37 | S37del2 | tCT | t-- | 1 | 1 | AY.20 | 0.000039 |
ORF7a | 37 | S37S | tcT | tcA | 1 | 1 | AY.21 | 0.001898 |
ORF7a | 37 | S37S | tcT | tcC | 1 | 1 | AY.22 | 0.002092 |
ORF7a | 37 | S37S | tcT | tcA | 1 | 1 | AY.24 | 0.000431 |
ORF7a | 37 | S37P | Tct | Cct | 1 | 1 | AY.24 | 0.000431 |
ORF7a | 37 | S37P | Tct | Cct | 1 | 1 | AY.25 | 0.000006 |
ORF7a | 37 | S37Y | tCt | tAt | 1 | 1 | AY.25 | 0.000006 |
ORF7a | 37 | S37C | tCt | tGt | 1 | 1 | AY.25 | 0.000006 |
ORF7a | 37 | S37K | TCT | AAA | 1 | 1 | AY.26 | 0.000028 |
ORF7a | 37 | S37S | tcT | tcA | 1 | 1 | AY.27 | 0.000065 |
ORF7a | 37 | S37del1 | Tct | -ct | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 37 | S37A | Tct | Gct | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 37 | S37P | Tct | Cct | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 37 | S37del1 | TCT | -NN | 1 | 1 | AY.3 | 0.00001 |
ORF7a | 37 | S37C | tCt | tGt | 1 | 1 | AY.3 | 0.00001 |
ORF7a | 37 | S37F | tCT | tTC | 1 | 1 | AY.30 | 0.000396 |
ORF7a | 37 | S37P | Tct | Cct | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 37 | S37S | tcT | tcC | 1 | 1 | AY.34 | 0.000097 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.34.1 | 0.00051 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | AY.34.1 | 0.00051 |
ORF7a | 37 | S37C | tCt | tGt | 1 | 1 | AY.35 | 0.000233 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.36 | 0.000148 |
ORF7a | 37 | S37A | Tct | Gct | 1 | 1 | AY.36 | 0.000148 |
ORF7a | 37 | S37Y | tCt | tAt | 1 | 1 | AY.37 | 0.000316 |
ORF7a | 37 | S37P | Tct | Cct | 1 | 1 | AY.39 | 0.000025 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | AY.39.1 | 0.00004 |
ORF7a | 37 | S37X | tCT | tAA | 1 | 1 | AY.4 | 0.000002 |
ORF7a | 37 | S37T | Tct | Act | 1 | 1 | AY.4 | 0.000002 |
ORF7a | 37 | S37S | tcT | tcA | 1 | 1 | AY.4.2 | 0.000022 |
ORF7a | 37 | S37Y | tCt | tAt | 1 | 1 | AY.4.2 | 0.000022 |
ORF7a | 37 | S37S | tcT | tcC | 1 | 1 | AY.4.5 | 0.000107 |
ORF7a | 37 | S37P | Tct | Cct | 1 | 1 | AY.40 | 0.000964 |
ORF7a | 37 | S37P | Tct | Cct | 1 | 1 | AY.42 | 0.00004 |
ORF7a | 37 | S37del2 | tCT | t-- | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 37 | S37A | Tct | Gct | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 37 | S37T | Tct | Act | 1 | 1 | AY.44 | 0.000006 |
ORF7a | 37 | S37del2 | tCT | t-- | 1 | 1 | AY.44 | 0.000006 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | AY.45 | 0.000122 |
ORF7a | 37 | S37A | Tct | Gct | 1 | 1 | AY.46 | 0.000104 |
ORF7a | 37 | S37C | tCt | tGt | 1 | 1 | AY.46.4 | 0.000165 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.46.4 | 0.000165 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.46.5 | 0.000198 |
ORF7a | 37 | S37T | Tct | Act | 1 | 1 | AY.47 | 0.000031 |
ORF7a | 37 | S37A | Tct | Gct | 1 | 1 | AY.47 | 0.000031 |
ORF7a | 37 | S37Y | tCt | tAt | 1 | 1 | AY.49 | 0.003195 |
ORF7a | 37 | S37Y | tCt | tAt | 1 | 1 | AY.5 | 0.000021 |
ORF7a | 37 | S37C | tCt | tGt | 1 | 1 | AY.5 | 0.000021 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | AY.5.4 | 0.000277 |
ORF7a | 37 | S37V | TCt | GTt | 1 | 1 | AY.5.4 | 0.000277 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | AY.51 | 0.000909 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.54 | 0.000095 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | AY.54 | 0.000095 |
ORF7a | 37 | S37Y | tCt | tAt | 1 | 1 | AY.59 | 0.00053 |
ORF7a | 37 | S37P | Tct | Cct | 1 | 1 | AY.59 | 0.00053 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | AY.61 | 0.000105 |
ORF7a | 37 | S37P | Tct | Cct | 1 | 1 | AY.61 | 0.000105 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.65 | 0.000533 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | AY.66 | 0.00107 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.68 | 0.000274 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.7 | 0.000196 |
ORF7a | 37 | S37A | Tct | Gct | 1 | 1 | AY.74 | 0.000116 |
ORF7a | 37 | S37S | tcT | tcC | 1 | 1 | AY.75 | 0.000056 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.75 | 0.000056 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.75.1 | 0.00018 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.76 | 0.004831 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | AY.76 | 0.004831 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | AY.79 | 0.001211 |
ORF7a | 37 | S37S | tcT | tcC | 1 | 1 | AY.9 | 0.000068 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | AY.9.1 | 0.000084 |
ORF7a | 37 | S37S | tcT | tcC | 1 | 1 | AY.9.1 | 0.000084 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | AY.92 | 0.000287 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | AY.94 | 0.000443 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.95 | 0.000761 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | AY.98 | 0.000079 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | AY.98 | 0.000079 |
ORF7a | 37 | S37S | tcT | tcA | 1 | 1 | AY.98 | 0.000079 |
ORF7a | 37 | S37del2 | tCT | t-- | 1 | 1 | AY.98.1 | 0.000048 |
ORF7a | 37 | S37A | Tct | Gct | 1 | 1 | AY.99.2 | 0.000092 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | AY.99.2 | 0.000092 |
ORF7a | 37 | S37C | tCt | tGt | 1 | 1 | B | 0.000128 |
ORF7a | 37 | S37A | Tct | Gct | 1 | 1 | B.1 | 0.000009 |
ORF7a | 37 | S37L | tCT | tTA | 1 | 1 | B.1 | 0.000009 |
ORF7a | 37 | S37T | Tct | Act | 1 | 1 | B.1 | 0.000009 |
ORF7a | 37 | S37T | Tct | Act | 1 | 1 | B.1.1 | 0.000018 |
ORF7a | 37 | S37T | Tct | Act | 1 | 1 | B.1.1.1 | 0.000327 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | B.1.1.222 | 0.000204 |
ORF7a | 37 | S37S | tcT | tcC | 1 | 1 | B.1.1.222 | 0.000204 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.1.234 | 0.012048 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.1.241 | 0.00207 |
ORF7a | 37 | S37A | Tct | Gct | 1 | 1 | B.1.1.25 | 0.000569 |
ORF7a | 37 | S37Y | tCt | tAt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF7a | 37 | S37S | tcT | tcA | 1 | 1 | B.1.1.312 | 0.001912 |
ORF7a | 37 | S37S | tcT | tcA | 1 | 1 | B.1.1.315 | 0.008475 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | B.1.1.318 | 0.000302 |
ORF7a | 37 | S37Y | tCt | tAt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF7a | 37 | S37S | tcT | tcC | 1 | 1 | B.1.1.33 | 0.000421 |
ORF7a | 37 | S37S | tcT | tcA | 1 | 1 | B.1.1.348 | 0.000796 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.1.348 | 0.000796 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.1.397 | 0.002252 |
ORF7a | 37 | S37S | tcT | tcC | 1 | 1 | B.1.1.47 | 0.005348 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.1.507 | 0.008696 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF7a | 37 | S37S | tcT | tcC | 1 | 1 | B.1.1.521 | 0.005348 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | B.1.1.522 | 0.017241 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF7a | 37 | S37T | Tct | Act | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 37 | S37del2 | tCT | t-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 37 | S37L | tCT | tTA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.1.8 | 0.003584 |
ORF7a | 37 | S37S | tcT | tcA | 1 | 1 | B.1.1.83 | 0.00271 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | B.1.115 | 0.021739 |
ORF7a | 37 | S37A | Tct | Gct | 1 | 1 | B.1.157 | 0.002985 |
ORF7a | 37 | S37C | tCt | tGt | 1 | 1 | B.1.160 | 0.000031 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.160.16 | 0.000929 |
ORF7a | 37 | S37Y | tCt | tAt | 1 | 1 | B.1.160.30 | 0.002976 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.160.8 | 0.001289 |
ORF7a | 37 | S37A | Tct | Gct | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 37 | S37K | TCT | AAA | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 37 | S37C | tCt | tGt | 1 | 1 | B.1.177.12 | 0.000152 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.177.32 | 0.00135 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.177.44 | 0.000519 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.177.45 | 0.000381 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.177.56 | 0.000668 |
ORF7a | 37 | S37S | tcT | tcA | 1 | 1 | B.1.177.60 | 0.000218 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF7a | 37 | S37del1 | tcT | tc- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.177.67 | 0.007634 |
ORF7a | 37 | S37C | tCt | tGt | 1 | 1 | B.1.177.77 | 0.000726 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | B.1.177.80 | 0.001912 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF7a | 37 | S37del1 | tcT | tc- | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 37 | S37del1 | tcT | tc- | 1 | 1 | B.1.214.2 | 0.0006 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.221 | 0.000071 |
ORF7a | 37 | S37P | Tct | Cct | 1 | 1 | B.1.234 | 0.000132 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.236 | 0.002053 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | B.1.240 | 0.000216 |
ORF7a | 37 | S37P | Tct | Cct | 1 | 1 | B.1.243 | 0.00007 |
ORF7a | 37 | S37Y | tCt | tAt | 1 | 1 | B.1.258 | 0.000067 |
ORF7a | 37 | S37C | tCt | tGt | 1 | 1 | B.1.258 | 0.000067 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.305 | 0.002151 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.311 | 0.000275 |
ORF7a | 37 | S37A | Tct | Gct | 1 | 1 | B.1.311 | 0.000275 |
ORF7a | 37 | S37Y | tCt | tAt | 1 | 1 | B.1.313 | 0.006579 |
ORF7a | 37 | S37S | tcT | tcA | 1 | 1 | B.1.351.2 | 0.000303 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF7a | 37 | S37S | tcT | tcC | 1 | 1 | B.1.36.1 | 0.00114 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.36.22 | 0.001208 |
ORF7a | 37 | S37P | Tct | Cct | 1 | 1 | B.1.36.29 | 0.000517 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.36.31 | 0.001751 |
ORF7a | 37 | S37A | Tct | Gct | 1 | 1 | B.1.36.36 | 0.000602 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.362 | 0.001541 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.367 | 0.000792 |
ORF7a | 37 | S37S | tcT | tcA | 1 | 1 | B.1.369 | 0.000285 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.369 | 0.000285 |
ORF7a | 37 | S37Y | tCt | tAt | 1 | 1 | B.1.378 | 0.006849 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.391 | 0.001127 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.400 | 0.000429 |
ORF7a | 37 | S37S | tcT | tcA | 1 | 1 | B.1.403 | 0.003268 |
ORF7a | 37 | S37S | tcT | tcC | 1 | 1 | B.1.409 | 0.000781 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.409 | 0.000781 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.416.1 | 0.001563 |
ORF7a | 37 | S37A | Tct | Gct | 1 | 1 | B.1.427 | 0.00005 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF7a | 37 | S37S | tcT | tcG | 1 | 1 | B.1.427 | 0.00005 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | B.1.438.1 | 0.000107 |
ORF7a | 37 | S37del1 | tCt | t-t | 1 | 1 | B.1.439 | 0.005917 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | B.1.459 | 0.004082 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | B.1.470 | 0.001404 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.509 | 0.000866 |
ORF7a | 37 | S37P | Tct | Cct | 1 | 1 | B.1.525 | 0.000113 |
ORF7a | 37 | S37L | tCT | tTG | 1 | 1 | B.1.526 | 0.000024 |
ORF7a | 37 | S37Y | tCt | tAt | 1 | 1 | B.1.526 | 0.000024 |
ORF7a | 37 | S37C | tCt | tGt | 1 | 1 | B.1.532 | 0.006211 |
ORF7a | 37 | S37S | tcT | tcC | 1 | 1 | B.1.561 | 0.000397 |
ORF7a | 37 | S37S | tcT | tcC | 1 | 1 | B.1.573 | 0.006098 |
ORF7a | 37 | S37S | tcT | tcA | 1 | 1 | B.1.596 | 0.000087 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.596 | 0.000087 |
ORF7a | 37 | S37S | tcT | tcA | 1 | 1 | B.1.609 | 0.000479 |
ORF7a | 37 | S37S | tcT | tcA | 1 | 1 | B.1.612 | 0.002653 |
ORF7a | 37 | S37S | tcT | tcC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 37 | S37V | TCt | GTt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 37 | S37del1 | tcT | tc- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF7a | 37 | S37X | tCT | tAA | 1 | 1 | B.1.617.3 | 0.002985 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.1.620 | 0.000946 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF7a | 37 | S37P | Tct | Cct | 1 | 1 | B.1.621 | 0.000089 |
ORF7a | 37 | S37T | Tct | Act | 1 | 1 | B.1.621 | 0.000089 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | B.1.636 | 0.006711 |
ORF7a | 37 | S37S | tcT | tcC | 1 | 1 | B.1.67 | 0.043478 |
ORF7a | 37 | S37S | tcT | tcC | 1 | 1 | B.40 | 0.000364 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | B.40 | 0.000364 |
ORF7a | 37 | S37Y | tCt | tAt | 1 | 1 | B.6 | 0.00091 |
ORF7a | 37 | S37S | tcT | tcA | 1 | 1 | B.6 | 0.00091 |
ORF7a | 37 | S37S | tcT | tcA | 1 | 1 | C.1 | 0.002392 |
ORF7a | 37 | S37S | tcT | tcC | 1 | 1 | C.14 | 0.004329 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | C.36.3 | 0.000567 |
ORF7a | 37 | S37Y | tCT | tAC | 1 | 1 | C.36.3 | 0.000567 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | C.36.3.1 | 0.002717 |
ORF7a | 37 | S37S | tcT | tcA | 1 | 1 | C.37 | 0.000116 |
ORF7a | 37 | S37A | Tct | Gct | 1 | 1 | D.2 | 0.000075 |
ORF7a | 37 | S37S | tcT | tcG | 1 | 1 | D.2 | 0.000075 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | N.5 | 0.001767 |
ORF7a | 37 | S37K | TCT | AAA | 1 | 1 | P.1 | 0.000016 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | P.1.12 | 0.000484 |
ORF7a | 37 | S37Y | tCt | tAt | 1 | 1 | P.1.14 | 0.000048 |
ORF7a | 37 | S37del2 | tCT | t-- | 1 | 1 | P.1.15 | 0.000232 |
ORF7a | 37 | S37P | Tct | Cct | 1 | 1 | P.1.15 | 0.000232 |
ORF7a | 37 | S37Y | tCt | tAt | 1 | 1 | P.1.15 | 0.000232 |
ORF7a | 37 | S37S | tcT | tcC | 1 | 1 | P.1.17 | 0.000162 |
ORF7a | 37 | S37Y | tCt | tAt | 1 | 1 | P.2 | 0.000187 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | P.2 | 0.000187 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | P.3 | 0.001595 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | P.5 | 0.013699 |
ORF7a | 37 | S37P | Tct | Cct | 1 | 1 | Q.1 | 0.000126 |
ORF7a | 37 | S37Y | tCt | tAt | 1 | 1 | Q.3 | 0.000145 |
ORF7a | 37 | S37del2 | tCT | t-- | 1 | 1 | R.1 | 0.00009 |
ORF7a | 37 | S37S | tcT | tcA | 1 | 1 | R.1 | 0.00009 |
ORF7a | 37 | S37del | TCT | --- | 1 | 1 | R.1 | 0.00009 |
ORF7a | 37 | S37F | tCt | tTt | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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