CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 37

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF7a	37	S37F		nonsyn	tCt	tTt	5302	5301	0.999811	27502-27504
ORF7a	37	S37F		nonsyn	tCT	tTC	5302	1	0.000188608	27502-27504
ORF7a	37	S37del		del	TCT	---	1690	1690	1	27502-27504
ORF7a	37	S37S		syn	tcT	tcC	784	465	0.593112	27502-27504
ORF7a	37	S37S		syn	tcT	tcA	784	275	0.350765	27502-27504
ORF7a	37	S37S		syn	tcT	tcG	784	44	0.0561224	27502-27504
ORF7a	37	S37P		nonsyn	Tct	Cct	313	313	1	27502-27504
ORF7a	37	S37C		nonsyn	tCt	tGt	175	175	1	27502-27504
ORF7a	37	S37Y		nonsyn	tCt	tAt	144	135	0.9375	27502-27504
ORF7a	37	S37Y		nonsyn	tCT	tAC	144	9	0.0625	27502-27504
ORF7a	37	S37A		nonsyn	Tct	Gct	104	104	1	27502-27504
ORF7a	37	S37T		nonsyn	Tct	Act	33	33	1	27502-27504
ORF7a	37	S37del1		del	tcT	tc-	32	14	0.4375	27502-27504
ORF7a	37	S37del1		del	TcT	Cc-	32	13	0.40625	27502-27504
ORF7a	37	S37del1		del	tCt	t-t	32	2	0.0625	27502-27504
ORF7a	37	S37del1		del	TCT	-NN	32	1	0.03125	27502-27504
ORF7a	37	S37del1		del	Tct	-ct	32	1	0.03125	27502-27504
ORF7a	37	S37del1		del	tCT	tT-	32	1	0.03125	27502-27504
ORF7a	37	S37K		nonsyn	TCT	AAA	30	30	1	27502-27504
ORF7a	37	S37del2		del	tCT	t--	25	24	0.96	27502-27504
ORF7a	37	S37del2		del	TCT	--N	25	1	0.04	27502-27504
ORF7a	37	S37L		nonsyn	tCT	tTA	3	2	0.666667	27502-27504
ORF7a	37	S37L		nonsyn	tCT	tTG	3	1	0.333333	27502-27504
ORF7a	37	S37V		nonsyn	TCt	GTt	2	2	1	27502-27504
ORF7a	37	S37X		nonsyn	tCT	tAA	2	2	1	27502-27504

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF7a	37	S37F	tCt	tTt	5301	5302	All	0.001014
ORF7a	37	S37F	tCT	tTC	1	5302	All	0
ORF7a	37	S37F	tCt	tTt	3235	3235	B.1.1.7	0.002896
ORF7a	37	S37del	TCT	---	1690	1690	All	0.000323
ORF7a	37	S37S	tcT	tcC	465	784	All	0.000089
ORF7a	37	S37S	tcT	tcA	275	784	All	0.000053
ORF7a	37	S37S	tcT	tcG	44	784	All	0.000008
ORF7a	37	S37del	TCT	---	335	335	AY.4	0.000521
ORF7a	37	S37P	Tct	Cct	313	313	All	0.00006
ORF7a	37	S37del	TCT	---	311	311	B.1.1.7	0.000278
ORF7a	37	S37F	tCt	tTt	264	264	AY.4	0.000411
ORF7a	37	S37P	Tct	Cct	218	218	B.1.1.7	0.000195
ORF7a	37	S37del	TCT	---	199	199	B.1.617.2	0.000749
ORF7a	37	S37del	TCT	---	179	179	B.1.177.21	0.013688
ORF7a	37	S37C	tCt	tGt	175	175	All	0.000033
ORF7a	37	S37F	tCt	tTt	157	157	B.1.617.2	0.000591
ORF7a	37	S37F	tCt	tTt	146	146	AY.103	0.000907
ORF7a	37	S37Y	tCt	tAt	135	144	All	0.000026
ORF7a	37	S37Y	tCT	tAC	9	144	All	0.000002
ORF7a	37	S37F	tCt	tTt	141	141	B.1.177.12	0.02139
ORF7a	37	S37S	tcT	tcA	84	139	B.1.1.7	0.000075
ORF7a	37	S37S	tcT	tcC	49	139	B.1.1.7	0.000044
ORF7a	37	S37S	tcT	tcG	6	139	B.1.1.7	0.000005
ORF7a	37	S37del	TCT	---	126	126	AY.25	0.000758
ORF7a	37	S37F	tCt	tTt	115	115	AY.43	0.00051
ORF7a	37	S37S	tcT	tcC	101	111	B.1.351	0.003002
ORF7a	37	S37S	tcT	tcA	10	111	B.1.351	0.000297
ORF7a	37	S37C	tCt	tGt	107	107	AY.91	0.078159
ORF7a	37	S37A	Tct	Gct	104	104	All	0.00002
ORF7a	37	S37F	tCt	tTt	85	85	AY.119	0.003001
ORF7a	37	S37F	tCt	tTt	82	82	AY.3.1	0.006991
ORF7a	37	S37S	tcT	tcC	59	60	AY.103	0.000366
ORF7a	37	S37S	tcT	tcA	1	60	AY.103	0.000006
ORF7a	37	S37del	TCT	---	57	57	AY.103	0.000354
ORF7a	37	S37F	tCt	tTt	56	56	B.1.2	0.000493
ORF7a	37	S37F	tCt	tTt	49	49	AY.44	0.000298
ORF7a	37	S37S	tcT	tcC	24	46	AY.4	0.000037
ORF7a	37	S37S	tcT	tcA	22	46	AY.4	0.000034
ORF7a	37	S37del	TCT	---	45	45	AY.3	0.000448
ORF7a	37	S37del	TCT	---	43	43	AY.29	0.000678
ORF7a	37	S37S	tcT	tcC	43	43	B.1.1.500	0.86
ORF7a	37	S37del	TCT	---	39	39	AY.44	0.000237
ORF7a	37	S37S	tcT	tcC	24	38	B.1.617.2	0.00009
ORF7a	37	S37S	tcT	tcA	8	38	B.1.617.2	0.00003
ORF7a	37	S37S	tcT	tcG	6	38	B.1.617.2	0.000023
ORF7a	37	S37F	tCt	tTt	36	36	B.1	0.00033
ORF7a	37	S37F	tCt	tTt	34	34	AY.100	0.001564
ORF7a	37	S37T	Tct	Act	33	33	All	0.000006
ORF7a	37	S37F	tCt	tTt	33	33	AY.33	0.002204
ORF7a	37	S37del1	tcT	tc-	14	32	All	0.000003
ORF7a	37	S37del1	TcT	Cc-	13	32	All	0.000002
ORF7a	37	S37del1	tCt	t-t	2	32	All	0
ORF7a	37	S37del1	tCT	tT-	1	32	All	0
ORF7a	37	S37del1	Tct	-ct	1	32	All	0
ORF7a	37	S37del1	TCT	-NN	1	32	All	0
ORF7a	37	S37F	tCt	tTt	32	32	P.1	0.000504
ORF7a	37	S37K	TCT	AAA	30	30	All	0.000006
ORF7a	37	S37F	tCt	tTt	30	30	AY.39	0.000741
ORF7a	37	S37F	tCt	tTt	30	30	B.1.525	0.003395
ORF7a	37	S37S	tcT	tcA	26	28	AY.3.1	0.002217
ORF7a	37	S37S	tcT	tcG	2	28	AY.3.1	0.000171
ORF7a	37	S37Y	tCt	tAt	20	28	B.1.1.7	0.000018
ORF7a	37	S37Y	tCT	tAC	8	28	B.1.1.7	0.000007
ORF7a	37	S37A	Tct	Gct	28	28	B.1.2	0.000247
ORF7a	37	S37A	Tct	Gct	27	27	B.1.1.7	0.000024
ORF7a	37	S37F	tCt	tTt	27	27	B.1.399	0.052224
ORF7a	37	S37F	tCt	tTt	27	27	D.2	0.002026
ORF7a	37	S37F	tCt	tTt	26	26	AY.101	0.012751
ORF7a	37	S37F	tCt	tTt	26	26	AY.3	0.000259
ORF7a	37	S37F	tCt	tTt	26	26	AY.70	0.005421
ORF7a	37	S37del2	tCT	t--	24	25	All	0.000005
ORF7a	37	S37del2	TCT	--N	1	25	All	0
ORF7a	37	S37S	tcT	tcA	25	25	B.1.526	0.000588
ORF7a	37	S37F	tCt	tTt	24	24	AY.29	0.000379
ORF7a	37	S37S	tcT	tcA	18	23	B.1.2	0.000158
ORF7a	37	S37S	tcT	tcC	4	23	B.1.2	0.000035
ORF7a	37	S37S	tcT	tcG	1	23	B.1.2	0.000009
ORF7a	37	S37F	tCt	tTt	23	23	B.1.351	0.000684
ORF7a	37	S37F	tCt	tTt	22	22	AY.102	0.000583
ORF7a	37	S37P	Tct	Cct	22	22	B.1.351	0.000654
ORF7a	37	S37F	tCt	tTt	22	22	C.37	0.002553
ORF7a	37	S37del	TCT	---	21	21	AY.43	0.000093
ORF7a	37	S37del	TCT	---	21	21	B.1.1.214	0.001165
ORF7a	37	S37del	TCT	---	21	21	U.1	0.269231
ORF7a	37	S37S	tcT	tcA	11	20	B.1	0.000101
ORF7a	37	S37S	tcT	tcC	9	20	B.1	0.000082
ORF7a	37	S37F	tCt	tTt	20	20	B.1.1	0.000363
ORF7a	37	S37F	tCt	tTt	18	18	AY.25	0.000108
ORF7a	37	S37S	tcT	tcC	17	18	B.1.177	0.000224
ORF7a	37	S37S	tcT	tcG	1	18	B.1.177	0.000013
ORF7a	37	S37Y	tCt	tAt	18	18	B.1.399	0.034816
ORF7a	37	S37F	tCt	tTt	18	18	B.1.526	0.000423
ORF7a	37	S37F	tCt	tTt	17	17	AY.26	0.000481
ORF7a	37	S37F	tCt	tTt	17	17	AY.4.2	0.000369
ORF7a	37	S37S	tcT	tcC	16	17	AY.44	0.000097
ORF7a	37	S37S	tcT	tcG	1	17	AY.44	0.000006
ORF7a	37	S37del	TCT	---	17	17	AY.7.2	0.009508
ORF7a	37	S37F	tCt	tTt	17	17	B.1.429	0.0004
ORF7a	37	S37S	tcT	tcG	17	17	B.1.525	0.001924
ORF7a	37	S37F	tCt	tTt	17	17	B.1.637	0.001242
ORF7a	37	S37F	tCt	tTt	16	16	AY.20	0.000622
ORF7a	37	S37del	TCT	---	16	16	AY.3.1	0.001364
ORF7a	37	S37del2	tCT	t--	15	16	AY.4	0.000023
ORF7a	37	S37del2	TCT	--N	1	16	AY.4	0.000002
ORF7a	37	S37C	tCt	tGt	16	16	B.1.1.7	0.000014
ORF7a	37	S37T	Tct	Act	16	16	B.3.1	0.026534
ORF7a	37	S37A	Tct	Gct	15	15	AY.45	0.001825
ORF7a	37	S37F	tCt	tTt	15	15	B.1.177	0.000198
ORF7a	37	S37S	tcT	tcC	15	15	P.1.12	0.00726
ORF7a	37	S37del1	TcT	Cc-	13	14	AY.103	0.000081
ORF7a	37	S37del1	tCT	tT-	1	14	AY.103	0.000006
ORF7a	37	S37F	tCt	tTt	14	14	AY.120	0.000521
ORF7a	37	S37C	tCt	tGt	14	14	AY.4	0.000022
ORF7a	37	S37K	TCT	AAA	14	14	B.1.1.7	0.000013
ORF7a	37	S37del	TCT	---	14	14	C.37	0.001625
ORF7a	37	S37S	tcT	tcC	13	13	AY.3	0.000129
ORF7a	37	S37del	TCT	---	13	13	AY.39	0.000321
ORF7a	37	S37Y	tCt	tAt	13	13	AY.4	0.00002
ORF7a	37	S37Y	tCt	tAt	13	13	B.1	0.000119
ORF7a	37	S37S	tcT	tcC	10	13	B.1.258	0.000665
ORF7a	37	S37S	tcT	tcA	3	13	B.1.258	0.0002
ORF7a	37	S37F	tCt	tTt	13	13	B.1.631	0.043771
ORF7a	37	S37F	tCt	tTt	12	12	B.1.160	0.000374
ORF7a	37	S37F	tCt	tTt	12	12	B.1.240	0.002587
ORF7a	37	S37F	tCt	tTt	12	12	B.1.243	0.000835
ORF7a	37	S37del	TCT	---	11	11	B.1	0.000101
ORF7a	37	S37F	tCt	tTt	11	11	B.1.177.81	0.002083
ORF7a	37	S37K	TCT	AAA	10	10	AY.4	0.000016
ORF7a	37	S37S	tcT	tcA	5	10	AY.43	0.000022
ORF7a	37	S37S	tcT	tcC	3	10	AY.43	0.000013
ORF7a	37	S37S	tcT	tcG	2	10	AY.43	0.000009
ORF7a	37	S37F	tCt	tTt	10	10	AY.88	0.008842
ORF7a	37	S37del	TCT	---	10	10	B.1.2	0.000088
ORF7a	37	S37S	tcT	tcA	10	10	B.1.582	0.004907
ORF7a	37	S37S	tcT	tcC	8	9	B.1.1	0.000145
ORF7a	37	S37S	tcT	tcA	1	9	B.1.1	0.000018
ORF7a	37	S37del	TCT	---	9	9	B.1.1.284	0.000967
ORF7a	37	S37F	tCt	tTt	9	9	B.1.1.519	0.000357
ORF7a	37	S37del	TCT	---	9	9	P.1	0.000142
ORF7a	37	S37S	tcT	tcA	6	9	P.1	0.000095
ORF7a	37	S37S	tcT	tcC	3	9	P.1	0.000047
ORF7a	37	S37F	tCt	tTt	9	9	Q.1	0.001137
ORF7a	37	S37Y	tCt	tAt	8	8	AY.120	0.000297
ORF7a	37	S37del	TCT	---	8	8	AY.23	0.000558
ORF7a	37	S37S	tcT	tcA	6	8	AY.25	0.000036
ORF7a	37	S37S	tcT	tcC	2	8	AY.25	0.000012
ORF7a	37	S37del	TCT	---	8	8	AY.47	0.000249
ORF7a	37	S37F	tCt	tTt	8	8	AY.61	0.000838
ORF7a	37	S37F	tCt	tTt	8	8	B.1.617.1	0.001032
ORF7a	37	S37F	tCt	tTt	8	8	Q.3	0.00116
ORF7a	37	S37del	TCT	---	7	7	AY.20	0.000272
ORF7a	37	S37del1	tcT	tc-	7	7	B.1.525	0.000792
ORF7a	37	S37del	TCT	---	6	6	AY.100	0.000276
ORF7a	37	S37F	tCt	tTt	6	6	AY.117	0.000507
ORF7a	37	S37del	TCT	---	6	6	AY.26	0.00017
ORF7a	37	S37F	tCt	tTt	6	6	AY.34	0.000582
ORF7a	37	S37Y	tCt	tAt	6	6	AY.43	0.000027
ORF7a	37	S37F	tCt	tTt	6	6	AY.57	0.003937
ORF7a	37	S37S	tcT	tcC	6	6	B.1.160.30	0.017857
ORF7a	37	S37del	TCT	---	6	6	B.1.177	0.000079
ORF7a	37	S37F	tCt	tTt	6	6	B.1.177.21	0.000459
ORF7a	37	S37del	TCT	---	6	6	B.1.177.44	0.003114
ORF7a	37	S37P	Tct	Cct	6	6	B.1.2	0.000053
ORF7a	37	S37F	tCt	tTt	6	6	B.1.561	0.002382
ORF7a	37	S37F	tCt	tTt	6	6	Q.8	0.000989
ORF7a	37	S37F	tCt	tTt	5	5	AY.23	0.000349
ORF7a	37	S37S	tcT	tcC	4	5	AY.39	0.000099
ORF7a	37	S37S	tcT	tcA	1	5	AY.39	0.000025
ORF7a	37	S37F	tCt	tTt	5	5	AY.39.1	0.000198
ORF7a	37	S37F	tCt	tTt	5	5	AY.40	0.004822
ORF7a	37	S37F	tCt	tTt	5	5	AY.5	0.000103
ORF7a	37	S37F	tCt	tTt	5	5	AY.98.1	0.000242
ORF7a	37	S37del	TCT	---	5	5	B.1.1.56	0.089286
ORF7a	37	S37del	TCT	---	5	5	B.1.429	0.000118
ORF7a	37	S37del	TCT	---	5	5	B.1.526	0.000118
ORF7a	37	S37P	Tct	Cct	5	5	B.1.617.2	0.000019
ORF7a	37	S37del	TCT	---	5	5	B.1.637	0.000365
ORF7a	37	S37F	tCt	tTt	5	5	C.38	0.040323
ORF7a	37	S37F	tCt	tTt	5	5	P.1.15	0.001162
ORF7a	37	S37S	tcT	tcC	4	4	AY.102	0.000106
ORF7a	37	S37P	Tct	Cct	4	4	AY.103	0.000025
ORF7a	37	S37A	Tct	Gct	4	4	AY.103	0.000025
ORF7a	37	S37F	tCt	tTt	4	4	AY.113	0.00057
ORF7a	37	S37F	tCt	tTt	4	4	AY.116	0.001147
ORF7a	37	S37S	tcT	tcC	4	4	AY.119	0.000141
ORF7a	37	S37del	TCT	---	4	4	AY.121	0.000541
ORF7a	37	S37Y	tCt	tAt	4	4	AY.20	0.000155
ORF7a	37	S37Y	tCt	tAt	4	4	AY.26	0.000113
ORF7a	37	S37P	Tct	Cct	4	4	AY.4	0.000006
ORF7a	37	S37del	TCT	---	4	4	AY.4.2	0.000087
ORF7a	37	S37F	tCt	tTt	4	4	AY.4.5	0.00043
ORF7a	37	S37P	Tct	Cct	4	4	AY.44	0.000024
ORF7a	37	S37C	tCt	tGt	4	4	AY.44	0.000024
ORF7a	37	S37F	tCt	tTt	4	4	AY.46	0.000416
ORF7a	37	S37P	Tct	Cct	4	4	AY.46.6	0.000289
ORF7a	37	S37S	tcT	tcC	4	4	AY.50	0.003197
ORF7a	37	S37F	tCt	tTt	4	4	AY.6	0.000165
ORF7a	37	S37S	tcT	tcA	2	4	AY.6	0.000082
ORF7a	37	S37S	tcT	tcG	2	4	AY.6	0.000082
ORF7a	37	S37F	tCt	tTt	4	4	AY.9.2	0.000147
ORF7a	37	S37del	TCT	---	4	4	AY.98.1	0.000194
ORF7a	37	S37C	tCt	tGt	4	4	B.1	0.000037
ORF7a	37	S37Y	tCt	tAt	4	4	B.1.1	0.000073
ORF7a	37	S37T	Tct	Act	4	4	B.1.1.28	0.001245
ORF7a	37	S37F	tCt	tTt	4	4	B.1.1.521	0.02139
ORF7a	37	S37F	tCt	tTt	4	4	B.1.258	0.000266
ORF7a	37	S37F	tCt	tTt	4	4	B.1.258.22	0.010667
ORF7a	37	S37F	tCt	tTt	4	4	B.1.36.8	0.004
ORF7a	37	S37S	tcT	tcA	4	4	B.1.398	0.011905
ORF7a	37	S37A	Tct	Gct	4	4	B.1.409	0.003125
ORF7a	37	S37S	tcT	tcA	4	4	B.1.429	0.000094
ORF7a	37	S37F	tCt	tTt	4	4	B.1.621	0.000354
ORF7a	37	S37P	Tct	Cct	4	4	B.1.637	0.000292
ORF7a	37	S37P	Tct	Cct	3	3	A	0.001161
ORF7a	37	S37L	tCT	tTA	2	3	All	0
ORF7a	37	S37L	tCT	tTG	1	3	All	0
ORF7a	37	S37Y	tCt	tAt	3	3	AY.102	0.00008
ORF7a	37	S37Y	tCt	tAt	3	3	AY.103	0.000019
ORF7a	37	S37del	TCT	---	3	3	AY.106	0.001005
ORF7a	37	S37S	tcT	tcC	2	3	AY.117	0.000169
ORF7a	37	S37S	tcT	tcA	1	3	AY.117	0.000085
ORF7a	37	S37del	TCT	---	3	3	AY.118	0.000188
ORF7a	37	S37F	tCt	tTt	3	3	AY.118	0.000188
ORF7a	37	S37F	tCt	tTt	3	3	AY.14	0.000264
ORF7a	37	S37F	tCt	tTt	3	3	AY.16	0.001139
ORF7a	37	S37S	tcT	tcC	3	3	AY.26	0.000085
ORF7a	37	S37F	tCt	tTt	3	3	AY.27	0.000194
ORF7a	37	S37P	Tct	Cct	3	3	AY.3	0.00003
ORF7a	37	S37C	tCt	tGt	3	3	AY.4.2.1	0.000447
ORF7a	37	S37del	TCT	---	3	3	AY.4.5	0.000322
ORF7a	37	S37del	TCT	---	3	3	AY.42	0.000121
ORF7a	37	S37A	Tct	Gct	3	3	AY.44	0.000018
ORF7a	37	S37F	tCt	tTt	3	3	AY.46.6	0.000217
ORF7a	37	S37F	tCt	tTt	3	3	AY.5.4	0.00083
ORF7a	37	S37F	tCt	tTt	3	3	AY.74	0.000347
ORF7a	37	S37F	tCt	tTt	3	3	AY.9.1	0.000251
ORF7a	37	S37C	tCt	tGt	3	3	AY.94	0.001328
ORF7a	37	S37S	tcT	tcG	3	3	AY.98.1	0.000145
ORF7a	37	S37F	tCt	tTt	3	3	AY.99.2	0.000276
ORF7a	37	S37P	Tct	Cct	3	3	B.1	0.000027
ORF7a	37	S37F	tCt	tTt	3	3	B.1.1.207	0.003546
ORF7a	37	S37del	TCT	---	3	3	B.1.1.25	0.001706
ORF7a	37	S37F	tCt	tTt	3	3	B.1.1.318	0.000905
ORF7a	37	S37del1	tcT	tc-	2	3	B.1.1.7	0.000002
ORF7a	37	S37del1	tCt	t-t	1	3	B.1.1.7	0.000001
ORF7a	37	S37S	tcT	tcC	2	3	B.1.160	0.000062
ORF7a	37	S37S	tcT	tcA	1	3	B.1.160	0.000031
ORF7a	37	S37F	tCt	tTt	3	3	B.1.160.17	0.005102
ORF7a	37	S37F	tCt	tTt	3	3	B.1.177.73	0.001699
ORF7a	37	S37C	tCt	tGt	3	3	B.1.2	0.000026
ORF7a	37	S37del	TCT	---	3	3	B.1.234	0.000396
ORF7a	37	S37del	TCT	---	3	3	B.1.351	0.000089
ORF7a	37	S37P	Tct	Cct	3	3	B.1.429	0.000071
ORF7a	37	S37Y	tCt	tAt	3	3	B.1.617.2	0.000011
ORF7a	37	S37S	tcT	tcA	2	3	B.1.621	0.000177
ORF7a	37	S37S	tcT	tcC	1	3	B.1.621	0.000089
ORF7a	37	S37del	TCT	---	3	3	B.1.626	0.017143
ORF7a	37	S37F	tCt	tTt	3	3	N.4	0.012766
ORF7a	37	S37F	tCt	tTt	3	3	P.1.14	0.000143
ORF7a	37	S37F	tCt	tTt	3	3	P.1.17	0.000485
ORF7a	37	S37del	TCT	---	3	3	Q.8	0.000495
ORF7a	37	S37F	tCt	tTt	2	2	A	0.000774
ORF7a	37	S37del	TCT	---	2	2	A.28	0.005291
ORF7a	37	S37X	tCT	tAA	2	2	All	0
ORF7a	37	S37V	TCt	GTt	2	2	All	0
ORF7a	37	S37S	tcT	tcA	2	2	AY.100	0.000092
ORF7a	37	S37F	tCt	tTt	2	2	AY.114	0.000462
ORF7a	37	S37del	TCT	---	2	2	AY.119	0.000071
ORF7a	37	S37F	tCt	tTt	2	2	AY.12	0.000632
ORF7a	37	S37S	tcT	tcC	2	2	AY.120	0.000074
ORF7a	37	S37del	TCT	---	2	2	AY.120	0.000074
ORF7a	37	S37Y	tCt	tAt	2	2	AY.120.2	0.002571
ORF7a	37	S37S	tcT	tcC	1	2	AY.23	0.00007
ORF7a	37	S37S	tcT	tcA	1	2	AY.23	0.00007
ORF7a	37	S37P	Tct	Cct	2	2	AY.26	0.000057
ORF7a	37	S37del	TCT	---	2	2	AY.29.1	0.000441
ORF7a	37	S37A	Tct	Gct	2	2	AY.3	0.00002
ORF7a	37	S37S	tcT	tcC	2	2	AY.33	0.000134
ORF7a	37	S37del	TCT	---	2	2	AY.33	0.000134
ORF7a	37	S37Y	tCt	tAt	2	2	AY.34	0.000194
ORF7a	37	S37del	TCT	---	2	2	AY.34	0.000194
ORF7a	37	S37F	tCt	tTt	2	2	AY.35	0.000466
ORF7a	37	S37Y	tCt	tAt	2	2	AY.39	0.000049
ORF7a	37	S37C	tCt	tGt	2	2	AY.39	0.000049
ORF7a	37	S37A	Tct	Gct	2	2	AY.4	0.000003
ORF7a	37	S37F	tCt	tTt	2	2	AY.42	0.00008
ORF7a	37	S37P	Tct	Cct	2	2	AY.43	0.000009
ORF7a	37	S37Y	tCt	tAt	2	2	AY.44	0.000012
ORF7a	37	S37F	tCt	tTt	2	2	AY.45	0.000243
ORF7a	37	S37Y	tCt	tAt	2	2	AY.46	0.000208
ORF7a	37	S37F	tCt	tTt	2	2	AY.47	0.000062
ORF7a	37	S37del	TCT	---	2	2	AY.5	0.000041
ORF7a	37	S37K	TCT	AAA	2	2	AY.5.3	0.000675
ORF7a	37	S37del	TCT	---	2	2	AY.5.3	0.000675
ORF7a	37	S37del2	tCT	t--	2	2	AY.7.2	0.001119
ORF7a	37	S37del	TCT	---	2	2	AY.75	0.000112
ORF7a	37	S37del	TCT	---	2	2	AY.9	0.000135
ORF7a	37	S37F	tCt	tTt	2	2	AY.9	0.000135
ORF7a	37	S37S	tcT	tcC	2	2	AY.9.2	0.000073
ORF7a	37	S37del	TCT	---	2	2	B.1.1	0.000036
ORF7a	37	S37F	tCt	tTt	2	2	B.1.1.214	0.000111
ORF7a	37	S37P	Tct	Cct	2	2	B.1.1.216	0.001781
ORF7a	37	S37S	tcT	tcC	2	2	B.1.1.228	0.006098
ORF7a	37	S37F	tCt	tTt	2	2	B.1.1.25	0.001137
ORF7a	37	S37F	tCt	tTt	2	2	B.1.1.305	0.007722
ORF7a	37	S37F	tCt	tTt	2	2	B.1.1.33	0.000842
ORF7a	37	S37S	tcT	tcA	1	2	B.1.1.519	0.00004
ORF7a	37	S37S	tcT	tcC	1	2	B.1.1.519	0.00004
ORF7a	37	S37F	tCt	tTt	2	2	B.1.1.528	0.009615
ORF7a	37	S37S	tcT	tcC	2	2	B.1.139	0.001466
ORF7a	37	S37Y	tCt	tAt	2	2	B.1.160	0.000062
ORF7a	37	S37del	TCT	---	2	2	B.1.160	0.000062
ORF7a	37	S37P	Tct	Cct	2	2	B.1.177	0.000026
ORF7a	37	S37C	tCt	tGt	2	2	B.1.177	0.000026
ORF7a	37	S37del	TCT	---	2	2	B.1.177.43	0.002954
ORF7a	37	S37P	Tct	Cct	2	2	B.1.177.60	0.000437
ORF7a	37	S37F	tCt	tTt	2	2	B.1.177.7	0.00033
ORF7a	37	S37del	TCT	---	2	2	B.1.177.86	0.000367
ORF7a	37	S37F	tCt	tTt	2	2	B.1.234	0.000264
ORF7a	37	S37del	TCT	---	2	2	B.1.258	0.000133
ORF7a	37	S37A	Tct	Gct	2	2	B.1.258	0.000133
ORF7a	37	S37del	TCT	---	2	2	B.1.258.11	0.000793
ORF7a	37	S37F	tCt	tTt	2	2	B.1.332	0.006993
ORF7a	37	S37F	tCt	tTt	2	2	B.1.349	0.00143
ORF7a	37	S37del	TCT	---	2	2	B.1.36	0.000292
ORF7a	37	S37F	tCt	tTt	2	2	B.1.375	0.001639
ORF7a	37	S37F	tCt	tTt	2	2	B.1.427	0.000101
ORF7a	37	S37F	tCt	tTt	2	2	B.1.575	0.000607
ORF7a	37	S37del	TCT	---	2	2	B.1.596	0.000174
ORF7a	37	S37T	Tct	Act	2	2	B.1.617.2	0.000008
ORF7a	37	S37A	Tct	Gct	2	2	B.1.617.2	0.000008
ORF7a	37	S37C	tCt	tGt	2	2	B.1.617.2	0.000008
ORF7a	37	S37F	tCt	tTt	2	2	B.1.619	0.001742
ORF7a	37	S37Y	tCt	tAt	2	2	B.1.621	0.000177
ORF7a	37	S37del	TCT	---	2	2	C.36.3	0.001134
ORF7a	37	S37T	Tct	Act	2	2	P.1	0.000032
ORF7a	37	S37S	tcT	tcC	1	2	P.1.14	0.000048
ORF7a	37	S37S	tcT	tcG	1	2	P.1.14	0.000048
ORF7a	37	S37F	tCt	tTt	2	2	P.1.9	0.009615
ORF7a	37	S37F	tCt	tTt	2	2	Q.4	0.00091
ORF7a	37	S37F	tCt	tTt	2	2	Q.7	0.002222
ORF7a	37	S37del	TCT	---	1	1	A	0.000387
ORF7a	37	S37del	TCT	---	1	1	A.1	0.000282
ORF7a	37	S37S	tcT	tcC	1	1	A.2	0.000662
ORF7a	37	S37F	tCt	tTt	1	1	AA.7	0.009174
ORF7a	37	S37Y	tCt	tAt	1	1	AD.2	0.000219
ORF7a	37	S37S	tcT	tcC	1	1	AD.2	0.000219
ORF7a	37	S37F	tCt	tTt	1	1	AY.1	0.000396
ORF7a	37	S37C	tCt	tGt	1	1	AY.100	0.000046
ORF7a	37	S37Y	tCt	tAt	1	1	AY.100	0.000046
ORF7a	37	S37P	Tct	Cct	1	1	AY.100	0.000046
ORF7a	37	S37del	TCT	---	1	1	AY.102	0.000027
ORF7a	37	S37P	Tct	Cct	1	1	AY.102	0.000027
ORF7a	37	S37del	TCT	---	1	1	AY.108	0.001103
ORF7a	37	S37S	tcT	tcC	1	1	AY.109	0.00074
ORF7a	37	S37del	TCT	---	1	1	AY.110	0.000113
ORF7a	37	S37del1	tcT	tc-	1	1	AY.110	0.000113
ORF7a	37	S37del	TCT	---	1	1	AY.113	0.000142
ORF7a	37	S37K	TCT	AAA	1	1	AY.116	0.000287
ORF7a	37	S37del	TCT	---	1	1	AY.116.1	0.000311
ORF7a	37	S37Y	tCt	tAt	1	1	AY.117	0.000085
ORF7a	37	S37P	Tct	Cct	1	1	AY.118	0.000063
ORF7a	37	S37T	Tct	Act	1	1	AY.119	0.000035
ORF7a	37	S37del	TCT	---	1	1	AY.12	0.000316
ORF7a	37	S37del	TCT	---	1	1	AY.120.1	0.000321
ORF7a	37	S37F	tCt	tTt	1	1	AY.120.1	0.000321
ORF7a	37	S37C	tCt	tGt	1	1	AY.121	0.000135
ORF7a	37	S37Y	tCt	tAt	1	1	AY.14	0.000088
ORF7a	37	S37C	tCt	tGt	1	1	AY.14	0.000088
ORF7a	37	S37del	TCT	---	1	1	AY.16.1	0.00047
ORF7a	37	S37C	tCt	tGt	1	1	AY.16.1	0.00047
ORF7a	37	S37F	tCt	tTt	1	1	AY.16.1	0.00047
ORF7a	37	S37P	Tct	Cct	1	1	AY.20	0.000039
ORF7a	37	S37del2	tCT	t--	1	1	AY.20	0.000039
ORF7a	37	S37S	tcT	tcA	1	1	AY.21	0.001898
ORF7a	37	S37S	tcT	tcC	1	1	AY.22	0.002092
ORF7a	37	S37S	tcT	tcA	1	1	AY.24	0.000431
ORF7a	37	S37P	Tct	Cct	1	1	AY.24	0.000431
ORF7a	37	S37P	Tct	Cct	1	1	AY.25	0.000006
ORF7a	37	S37Y	tCt	tAt	1	1	AY.25	0.000006
ORF7a	37	S37C	tCt	tGt	1	1	AY.25	0.000006
ORF7a	37	S37K	TCT	AAA	1	1	AY.26	0.000028
ORF7a	37	S37S	tcT	tcA	1	1	AY.27	0.000065
ORF7a	37	S37del1	Tct	-ct	1	1	AY.29	0.000016
ORF7a	37	S37A	Tct	Gct	1	1	AY.29	0.000016
ORF7a	37	S37P	Tct	Cct	1	1	AY.29	0.000016
ORF7a	37	S37del1	TCT	-NN	1	1	AY.3	0.00001
ORF7a	37	S37C	tCt	tGt	1	1	AY.3	0.00001
ORF7a	37	S37F	tCT	tTC	1	1	AY.30	0.000396
ORF7a	37	S37P	Tct	Cct	1	1	AY.33	0.000067
ORF7a	37	S37S	tcT	tcC	1	1	AY.34	0.000097
ORF7a	37	S37F	tCt	tTt	1	1	AY.34.1	0.00051
ORF7a	37	S37del	TCT	---	1	1	AY.34.1	0.00051
ORF7a	37	S37C	tCt	tGt	1	1	AY.35	0.000233
ORF7a	37	S37F	tCt	tTt	1	1	AY.36	0.000148
ORF7a	37	S37A	Tct	Gct	1	1	AY.36	0.000148
ORF7a	37	S37Y	tCt	tAt	1	1	AY.37	0.000316
ORF7a	37	S37P	Tct	Cct	1	1	AY.39	0.000025
ORF7a	37	S37del	TCT	---	1	1	AY.39.1	0.00004
ORF7a	37	S37X	tCT	tAA	1	1	AY.4	0.000002
ORF7a	37	S37T	Tct	Act	1	1	AY.4	0.000002
ORF7a	37	S37S	tcT	tcA	1	1	AY.4.2	0.000022
ORF7a	37	S37Y	tCt	tAt	1	1	AY.4.2	0.000022
ORF7a	37	S37S	tcT	tcC	1	1	AY.4.5	0.000107
ORF7a	37	S37P	Tct	Cct	1	1	AY.40	0.000964
ORF7a	37	S37P	Tct	Cct	1	1	AY.42	0.00004
ORF7a	37	S37del2	tCT	t--	1	1	AY.43	0.000004
ORF7a	37	S37A	Tct	Gct	1	1	AY.43	0.000004
ORF7a	37	S37T	Tct	Act	1	1	AY.44	0.000006
ORF7a	37	S37del2	tCT	t--	1	1	AY.44	0.000006
ORF7a	37	S37del	TCT	---	1	1	AY.45	0.000122
ORF7a	37	S37A	Tct	Gct	1	1	AY.46	0.000104
ORF7a	37	S37C	tCt	tGt	1	1	AY.46.4	0.000165
ORF7a	37	S37F	tCt	tTt	1	1	AY.46.4	0.000165
ORF7a	37	S37F	tCt	tTt	1	1	AY.46.5	0.000198
ORF7a	37	S37T	Tct	Act	1	1	AY.47	0.000031
ORF7a	37	S37A	Tct	Gct	1	1	AY.47	0.000031
ORF7a	37	S37Y	tCt	tAt	1	1	AY.49	0.003195
ORF7a	37	S37Y	tCt	tAt	1	1	AY.5	0.000021
ORF7a	37	S37C	tCt	tGt	1	1	AY.5	0.000021
ORF7a	37	S37del	TCT	---	1	1	AY.5.4	0.000277
ORF7a	37	S37V	TCt	GTt	1	1	AY.5.4	0.000277
ORF7a	37	S37del	TCT	---	1	1	AY.51	0.000909
ORF7a	37	S37F	tCt	tTt	1	1	AY.54	0.000095
ORF7a	37	S37del	TCT	---	1	1	AY.54	0.000095
ORF7a	37	S37Y	tCt	tAt	1	1	AY.59	0.00053
ORF7a	37	S37P	Tct	Cct	1	1	AY.59	0.00053
ORF7a	37	S37del	TCT	---	1	1	AY.6	0.000041
ORF7a	37	S37del	TCT	---	1	1	AY.61	0.000105
ORF7a	37	S37P	Tct	Cct	1	1	AY.61	0.000105
ORF7a	37	S37F	tCt	tTt	1	1	AY.65	0.000533
ORF7a	37	S37del	TCT	---	1	1	AY.66	0.00107
ORF7a	37	S37F	tCt	tTt	1	1	AY.68	0.000274
ORF7a	37	S37F	tCt	tTt	1	1	AY.7	0.000196
ORF7a	37	S37A	Tct	Gct	1	1	AY.74	0.000116
ORF7a	37	S37S	tcT	tcC	1	1	AY.75	0.000056
ORF7a	37	S37F	tCt	tTt	1	1	AY.75	0.000056
ORF7a	37	S37F	tCt	tTt	1	1	AY.75.1	0.00018
ORF7a	37	S37F	tCt	tTt	1	1	AY.76	0.004831
ORF7a	37	S37del	TCT	---	1	1	AY.76	0.004831
ORF7a	37	S37del	TCT	---	1	1	AY.79	0.001211
ORF7a	37	S37S	tcT	tcC	1	1	AY.9	0.000068
ORF7a	37	S37del	TCT	---	1	1	AY.9.1	0.000084
ORF7a	37	S37S	tcT	tcC	1	1	AY.9.1	0.000084
ORF7a	37	S37del	TCT	---	1	1	AY.9.2	0.000037
ORF7a	37	S37del	TCT	---	1	1	AY.92	0.000287
ORF7a	37	S37del	TCT	---	1	1	AY.94	0.000443
ORF7a	37	S37F	tCt	tTt	1	1	AY.95	0.000761
ORF7a	37	S37F	tCt	tTt	1	1	AY.98	0.000079
ORF7a	37	S37del	TCT	---	1	1	AY.98	0.000079
ORF7a	37	S37S	tcT	tcA	1	1	AY.98	0.000079
ORF7a	37	S37del2	tCT	t--	1	1	AY.98.1	0.000048
ORF7a	37	S37A	Tct	Gct	1	1	AY.99.2	0.000092
ORF7a	37	S37del	TCT	---	1	1	AY.99.2	0.000092
ORF7a	37	S37C	tCt	tGt	1	1	B	0.000128
ORF7a	37	S37A	Tct	Gct	1	1	B.1	0.000009
ORF7a	37	S37L	tCT	tTA	1	1	B.1	0.000009
ORF7a	37	S37T	Tct	Act	1	1	B.1	0.000009
ORF7a	37	S37T	Tct	Act	1	1	B.1.1	0.000018
ORF7a	37	S37T	Tct	Act	1	1	B.1.1.1	0.000327
ORF7a	37	S37del	TCT	---	1	1	B.1.1.207	0.001182
ORF7a	37	S37del	TCT	---	1	1	B.1.1.222	0.000204
ORF7a	37	S37S	tcT	tcC	1	1	B.1.1.222	0.000204
ORF7a	37	S37F	tCt	tTt	1	1	B.1.1.234	0.012048
ORF7a	37	S37F	tCt	tTt	1	1	B.1.1.241	0.00207
ORF7a	37	S37A	Tct	Gct	1	1	B.1.1.25	0.000569
ORF7a	37	S37Y	tCt	tAt	1	1	B.1.1.28	0.000311
ORF7a	37	S37F	tCt	tTt	1	1	B.1.1.284	0.000107
ORF7a	37	S37F	tCt	tTt	1	1	B.1.1.306	0.000438
ORF7a	37	S37S	tcT	tcA	1	1	B.1.1.312	0.001912
ORF7a	37	S37S	tcT	tcA	1	1	B.1.1.315	0.008475
ORF7a	37	S37del	TCT	---	1	1	B.1.1.318	0.000302
ORF7a	37	S37Y	tCt	tAt	1	1	B.1.1.318	0.000302
ORF7a	37	S37S	tcT	tcC	1	1	B.1.1.33	0.000421
ORF7a	37	S37S	tcT	tcA	1	1	B.1.1.348	0.000796
ORF7a	37	S37F	tCt	tTt	1	1	B.1.1.348	0.000796
ORF7a	37	S37F	tCt	tTt	1	1	B.1.1.37	0.000193
ORF7a	37	S37F	tCt	tTt	1	1	B.1.1.397	0.002252
ORF7a	37	S37S	tcT	tcC	1	1	B.1.1.47	0.005348
ORF7a	37	S37F	tCt	tTt	1	1	B.1.1.507	0.008696
ORF7a	37	S37del	TCT	---	1	1	B.1.1.519	0.00004
ORF7a	37	S37S	tcT	tcC	1	1	B.1.1.521	0.005348
ORF7a	37	S37del	TCT	---	1	1	B.1.1.522	0.017241
ORF7a	37	S37F	tCt	tTt	1	1	B.1.1.63	0.000386
ORF7a	37	S37T	Tct	Act	1	1	B.1.1.7	0.000001
ORF7a	37	S37del2	tCT	t--	1	1	B.1.1.7	0.000001
ORF7a	37	S37L	tCT	tTA	1	1	B.1.1.7	0.000001
ORF7a	37	S37F	tCt	tTt	1	1	B.1.1.8	0.003584
ORF7a	37	S37S	tcT	tcA	1	1	B.1.1.83	0.00271
ORF7a	37	S37del	TCT	---	1	1	B.1.115	0.021739
ORF7a	37	S37A	Tct	Gct	1	1	B.1.157	0.002985
ORF7a	37	S37C	tCt	tGt	1	1	B.1.160	0.000031
ORF7a	37	S37F	tCt	tTt	1	1	B.1.160.16	0.000929
ORF7a	37	S37Y	tCt	tAt	1	1	B.1.160.30	0.002976
ORF7a	37	S37F	tCt	tTt	1	1	B.1.160.8	0.001289
ORF7a	37	S37A	Tct	Gct	1	1	B.1.177	0.000013
ORF7a	37	S37K	TCT	AAA	1	1	B.1.177	0.000013
ORF7a	37	S37C	tCt	tGt	1	1	B.1.177.12	0.000152
ORF7a	37	S37F	tCt	tTt	1	1	B.1.177.32	0.00135
ORF7a	37	S37F	tCt	tTt	1	1	B.1.177.44	0.000519
ORF7a	37	S37F	tCt	tTt	1	1	B.1.177.45	0.000381
ORF7a	37	S37F	tCt	tTt	1	1	B.1.177.56	0.000668
ORF7a	37	S37S	tcT	tcA	1	1	B.1.177.60	0.000218
ORF7a	37	S37F	tCt	tTt	1	1	B.1.177.60	0.000218
ORF7a	37	S37del1	tcT	tc-	1	1	B.1.177.63	0.002703
ORF7a	37	S37F	tCt	tTt	1	1	B.1.177.67	0.007634
ORF7a	37	S37C	tCt	tGt	1	1	B.1.177.77	0.000726
ORF7a	37	S37del	TCT	---	1	1	B.1.177.80	0.001912
ORF7a	37	S37del	TCT	---	1	1	B.1.177.81	0.000189
ORF7a	37	S37del	TCT	---	1	1	B.1.177.83	0.001481
ORF7a	37	S37del1	tcT	tc-	1	1	B.1.2	0.000009
ORF7a	37	S37del1	tcT	tc-	1	1	B.1.214.2	0.0006
ORF7a	37	S37del	TCT	---	1	1	B.1.221	0.000071
ORF7a	37	S37F	tCt	tTt	1	1	B.1.221	0.000071
ORF7a	37	S37P	Tct	Cct	1	1	B.1.234	0.000132
ORF7a	37	S37F	tCt	tTt	1	1	B.1.236	0.002053
ORF7a	37	S37del	TCT	---	1	1	B.1.240	0.000216
ORF7a	37	S37P	Tct	Cct	1	1	B.1.243	0.00007
ORF7a	37	S37Y	tCt	tAt	1	1	B.1.258	0.000067
ORF7a	37	S37C	tCt	tGt	1	1	B.1.258	0.000067
ORF7a	37	S37del	TCT	---	1	1	B.1.258.17	0.000104
ORF7a	37	S37F	tCt	tTt	1	1	B.1.305	0.002151
ORF7a	37	S37F	tCt	tTt	1	1	B.1.311	0.000275
ORF7a	37	S37A	Tct	Gct	1	1	B.1.311	0.000275
ORF7a	37	S37Y	tCt	tAt	1	1	B.1.313	0.006579
ORF7a	37	S37S	tcT	tcA	1	1	B.1.351.2	0.000303
ORF7a	37	S37F	tCt	tTt	1	1	B.1.351.2	0.000303
ORF7a	37	S37S	tcT	tcC	1	1	B.1.36.1	0.00114
ORF7a	37	S37F	tCt	tTt	1	1	B.1.36.22	0.001208
ORF7a	37	S37P	Tct	Cct	1	1	B.1.36.29	0.000517
ORF7a	37	S37F	tCt	tTt	1	1	B.1.36.31	0.001751
ORF7a	37	S37A	Tct	Gct	1	1	B.1.36.36	0.000602
ORF7a	37	S37F	tCt	tTt	1	1	B.1.362	0.001541
ORF7a	37	S37F	tCt	tTt	1	1	B.1.367	0.000792
ORF7a	37	S37S	tcT	tcA	1	1	B.1.369	0.000285
ORF7a	37	S37F	tCt	tTt	1	1	B.1.369	0.000285
ORF7a	37	S37Y	tCt	tAt	1	1	B.1.378	0.006849
ORF7a	37	S37F	tCt	tTt	1	1	B.1.391	0.001127
ORF7a	37	S37F	tCt	tTt	1	1	B.1.400	0.000429
ORF7a	37	S37S	tcT	tcA	1	1	B.1.403	0.003268
ORF7a	37	S37S	tcT	tcC	1	1	B.1.409	0.000781
ORF7a	37	S37F	tCt	tTt	1	1	B.1.409	0.000781
ORF7a	37	S37F	tCt	tTt	1	1	B.1.416.1	0.001563
ORF7a	37	S37A	Tct	Gct	1	1	B.1.427	0.00005
ORF7a	37	S37del	TCT	---	1	1	B.1.427	0.00005
ORF7a	37	S37S	tcT	tcG	1	1	B.1.427	0.00005
ORF7a	37	S37del	TCT	---	1	1	B.1.438.1	0.000107
ORF7a	37	S37del1	tCt	t-t	1	1	B.1.439	0.005917
ORF7a	37	S37del	TCT	---	1	1	B.1.459	0.004082
ORF7a	37	S37del	TCT	---	1	1	B.1.466.2	0.000391
ORF7a	37	S37del	TCT	---	1	1	B.1.468	0.005714
ORF7a	37	S37del	TCT	---	1	1	B.1.470	0.001404
ORF7a	37	S37F	tCt	tTt	1	1	B.1.509	0.000866
ORF7a	37	S37P	Tct	Cct	1	1	B.1.525	0.000113
ORF7a	37	S37L	tCT	tTG	1	1	B.1.526	0.000024
ORF7a	37	S37Y	tCt	tAt	1	1	B.1.526	0.000024
ORF7a	37	S37C	tCt	tGt	1	1	B.1.532	0.006211
ORF7a	37	S37S	tcT	tcC	1	1	B.1.561	0.000397
ORF7a	37	S37S	tcT	tcC	1	1	B.1.573	0.006098
ORF7a	37	S37S	tcT	tcA	1	1	B.1.596	0.000087
ORF7a	37	S37F	tCt	tTt	1	1	B.1.596	0.000087
ORF7a	37	S37S	tcT	tcA	1	1	B.1.609	0.000479
ORF7a	37	S37S	tcT	tcA	1	1	B.1.612	0.002653
ORF7a	37	S37S	tcT	tcC	1	1	B.1.617.1	0.000129
ORF7a	37	S37V	TCt	GTt	1	1	B.1.617.2	0.000004
ORF7a	37	S37del1	tcT	tc-	1	1	B.1.617.2	0.000004
ORF7a	37	S37del	TCT	---	1	1	B.1.617.3	0.002985
ORF7a	37	S37X	tCT	tAA	1	1	B.1.617.3	0.002985
ORF7a	37	S37F	tCt	tTt	1	1	B.1.620	0.000946
ORF7a	37	S37del	TCT	---	1	1	B.1.620	0.000946
ORF7a	37	S37P	Tct	Cct	1	1	B.1.621	0.000089
ORF7a	37	S37T	Tct	Act	1	1	B.1.621	0.000089
ORF7a	37	S37del	TCT	---	1	1	B.1.630	0.005236
ORF7a	37	S37del	TCT	---	1	1	B.1.636	0.006711
ORF7a	37	S37S	tcT	tcC	1	1	B.1.67	0.043478
ORF7a	37	S37S	tcT	tcC	1	1	B.40	0.000364
ORF7a	37	S37F	tCt	tTt	1	1	B.40	0.000364
ORF7a	37	S37Y	tCt	tAt	1	1	B.6	0.00091
ORF7a	37	S37S	tcT	tcA	1	1	B.6	0.00091
ORF7a	37	S37S	tcT	tcA	1	1	C.1	0.002392
ORF7a	37	S37S	tcT	tcC	1	1	C.14	0.004329
ORF7a	37	S37F	tCt	tTt	1	1	C.36.3	0.000567
ORF7a	37	S37Y	tCT	tAC	1	1	C.36.3	0.000567
ORF7a	37	S37F	tCt	tTt	1	1	C.36.3.1	0.002717
ORF7a	37	S37S	tcT	tcA	1	1	C.37	0.000116
ORF7a	37	S37A	Tct	Gct	1	1	D.2	0.000075
ORF7a	37	S37S	tcT	tcG	1	1	D.2	0.000075
ORF7a	37	S37F	tCt	tTt	1	1	N.5	0.001767
ORF7a	37	S37K	TCT	AAA	1	1	P.1	0.000016
ORF7a	37	S37F	tCt	tTt	1	1	P.1.12	0.000484
ORF7a	37	S37Y	tCt	tAt	1	1	P.1.14	0.000048
ORF7a	37	S37del2	tCT	t--	1	1	P.1.15	0.000232
ORF7a	37	S37P	Tct	Cct	1	1	P.1.15	0.000232
ORF7a	37	S37Y	tCt	tAt	1	1	P.1.15	0.000232
ORF7a	37	S37S	tcT	tcC	1	1	P.1.17	0.000162
ORF7a	37	S37Y	tCt	tAt	1	1	P.2	0.000187
ORF7a	37	S37F	tCt	tTt	1	1	P.2	0.000187
ORF7a	37	S37F	tCt	tTt	1	1	P.3	0.001595
ORF7a	37	S37F	tCt	tTt	1	1	P.5	0.013699
ORF7a	37	S37P	Tct	Cct	1	1	Q.1	0.000126
ORF7a	37	S37Y	tCt	tAt	1	1	Q.3	0.000145
ORF7a	37	S37del2	tCT	t--	1	1	R.1	0.00009
ORF7a	37	S37S	tcT	tcA	1	1	R.1	0.00009
ORF7a	37	S37del	TCT	---	1	1	R.1	0.00009
ORF7a	37	S37F	tCt	tTt	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.