CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 34 & Codon = cTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a34P34LnonsyncCtcTt69776977127493-27495

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a34P34LcCtcTt69776977All0.001334
ORF7a34P34LcCtcTt21372137B.1.1.70.001913
ORF7a34P34LcCtcTt17501750AY.40.002724
ORF7a34P34LcCtcTt295295B.1.617.20.001111
ORF7a34P34LcCtcTt155155AY.1030.000962
ORF7a34P34LcCtcTt138138B.1.20.001215
ORF7a34P34LcCtcTt135135AY.440.000822
ORF7a34P34LcCtcTt128128AY.30.001273
ORF7a34P34LcCtcTt123123B.1.5770.084536
ORF7a34P34LcCtcTt120120AY.430.000532
ORF7a34P34LcCtcTt8787P.10.001371
ORF7a34P34LcCtcTt7979AY.50.001631
ORF7a34P34LcCtcTt6868B.1.5260.001598
ORF7a34P34LcCtcTt6464B.1.619.10.041052
ORF7a34P34LcCtcTt6262AY.250.000373
ORF7a34P34LcCtcTt5858AY.4.20.001258
ORF7a34P34LcCtcTt5858B.10.000531
ORF7a34P34LcCtcTt5757P.1.100.01536
ORF7a34P34LcCtcTt5656AY.980.004424
ORF7a34P34LcCtcTt5050B.1.4290.001176
ORF7a34P34LcCtcTt5050B.1.6350.877193
ORF7a34P34LcCtcTt4343B.1.1770.000566
ORF7a34P34LcCtcTt4242B.1.3510.001249
ORF7a34P34LcCtcTt3636B.1.1.3110.012894
ORF7a34P34LcCtcTt3333AY.1190.001165
ORF7a34P34LcCtcTt3333AY.290.000521
ORF7a34P34LcCtcTt3131AY.260.000878
ORF7a34P34LcCtcTt3131B.1.4270.001565
ORF7a34P34LcCtcTt3030AY.1020.000795
ORF7a34P34LcCtcTt2828AY.1000.001288
ORF7a34P34LcCtcTt2828B.1.10.000508
ORF7a34P34LcCtcTt2727AY.910.019722
ORF7a34P34LcCtcTt2626AY.640.015476
ORF7a34P34LcCtcTt2222AY.200.000855
ORF7a34P34LcCtcTt2222AY.46.60.001589
ORF7a34P34LcCtcTt1919B.1.1600.000593
ORF7a34P34LcCtcTt1818AY.390.000445
ORF7a34P34LcCtcTt1818B.1.177.860.003302
ORF7a34P34LcCtcTt1818B.1.6210.001593
ORF7a34P34LcCtcTt1616AY.450.001947
ORF7a34P34LcCtcTt1515AY.1170.001268
ORF7a34P34LcCtcTt1515AY.740.001735
ORF7a34P34LcCtcTt1515B.1.438.10.001609
ORF7a34P34LcCtcTt1414AY.330.000935
ORF7a34P34LcCtcTt1414AY.870.011657
ORF7a34P34LcCtcTt1414C.370.001625
ORF7a34P34LcCtcTt1414P.1.140.000669
ORF7a34P34LcCtcTt1414Q.80.002309
ORF7a34P34LcCtcTt1313AY.9.20.000477
ORF7a34P34LcCtcTt1313AY.98.10.00063
ORF7a34P34LcCtcTt1313B.1.2210.000923
ORF7a34P34LcCtcTt1313B.1.5950.003392
ORF7a34P34LcCtcTt1212AY.1200.000446
ORF7a34P34LcCtcTt1212AY.470.000373
ORF7a34P34LcCtcTt1212AY.99.20.001106
ORF7a34P34LcCtcTt1212B.1.1.2140.000665
ORF7a34P34LcCtcTt1212B.1.1.5190.000477
ORF7a34P34LcCtcTt1212B.1.36.180.005042
ORF7a34P34LcCtcTt1212B.1.6370.000877
ORF7a34P34LcCtcTt1111R.10.00099
ORF7a34P34LcCtcTt1010AY.230.000697
ORF7a34P34LcCtcTt1010AY.340.00097
ORF7a34P34LcCtcTt99AY.1210.001218
ORF7a34P34LcCtcTt99AY.39.10.000357
ORF7a34P34LcCtcTt99B.1.2430.000626
ORF7a34P34LcCtcTt99P.1.150.002091
ORF7a34P34LcCtcTt99P.1.70.002874
ORF7a34P34LcCtcTt99Q.30.001305
ORF7a34P34LcCtcTt88AY.1180.000501
ORF7a34P34LcCtcTt88AY.5.40.002214
ORF7a34P34LcCtcTt88B.1.5250.000905
ORF7a34P34LcCtcTt88B.1.5960.000697
ORF7a34P34LcCtcTt88B.1.6280.002819
ORF7a34P34LcCtcTt77AY.4.30.005892
ORF7a34P34LcCtcTt77AY.60.000288
ORF7a34P34LcCtcTt77AY.70.001372
ORF7a34P34LcCtcTt77AY.9.10.000586
ORF7a34P34LcCtcTt77B.1.160.230.033816
ORF7a34P34LcCtcTt77B.1.2340.000924
ORF7a34P34LcCtcTt77D.20.000525
ORF7a34P34LcCtcTt66AY.360.000889
ORF7a34P34LcCtcTt66B.1.258.20.027027
ORF7a34P34LcCtcTt55AY.120.00158
ORF7a34P34LcCtcTt55AY.520.004072
ORF7a34P34LcCtcTt55AY.75.10.000902
ORF7a34P34LcCtcTt55B.1.1.2220.00102
ORF7a34P34LcCtcTt55B.1.1.280.001556
ORF7a34P34LcCtcTt55B.1.2580.000333
ORF7a34P34LcCtcTt55B.1.5880.00455
ORF7a34P34LcCtcTt55B.1.5970.023148
ORF7a34P34LcCtcTt55B.1.617.10.000645
ORF7a34P34LcCtcTt55P.1.120.00242
ORF7a34P34LcCtcTt44AD.20.000876
ORF7a34P34LcCtcTt44AY.116.10.001246
ORF7a34P34LcCtcTt44AY.3.10.000341
ORF7a34P34LcCtcTt44AY.320.00213
ORF7a34P34LcCtcTt44AY.460.000416
ORF7a34P34LcCtcTt44AY.540.000381
ORF7a34P34LcCtcTt44AY.610.000419
ORF7a34P34LcCtcTt44AY.770.00451
ORF7a34P34LcCtcTt44B0.000511
ORF7a34P34LcCtcTt44B.1.1.2840.00043
ORF7a34P34LcCtcTt44B.1.1.4160.00362
ORF7a34P34LcCtcTt44B.1.177.820.001909
ORF7a34P34LcCtcTt44B.1.258.170.000416
ORF7a34P34LcCtcTt44B.1.3110.001098
ORF7a34P34LcCtcTt44B.1.4000.001716
ORF7a34P34LcCtcTt44B.1.4970.001259
ORF7a34P34LcCtcTt44P.1.10.001271
ORF7a34P34LcCtcTt44Q.10.000505
ORF7a34P34LcCtcTt33A.23.10.002113
ORF7a34P34LcCtcTt33AY.160.001139
ORF7a34P34LcCtcTt33AY.300.001187
ORF7a34P34LcCtcTt33AY.400.002893
ORF7a34P34LcCtcTt33AY.410.000882
ORF7a34P34LcCtcTt33AY.420.000121
ORF7a34P34LcCtcTt33AY.680.000821
ORF7a34P34LcCtcTt33AY.90.000203
ORF7a34P34LcCtcTt33B.1.177.690.004451
ORF7a34P34LcCtcTt33B.1.2400.000647
ORF7a34P34LcCtcTt33B.1.4280.003061
ORF7a34P34LcCtcTt33B.1.5640.001278
ORF7a34P34LcCtcTt33B.1.5760.00272
ORF7a34P34LcCtcTt33B.1.6190.002613
ORF7a34P34LcCtcTt33B.1.621.10.001517
ORF7a34P34LcCtcTt33P.20.00056
ORF7a34P34LcCtcTt22AY.110.002677
ORF7a34P34LcCtcTt22AY.1100.000225
ORF7a34P34LcCtcTt22AY.1110.000366
ORF7a34P34LcCtcTt22AY.1130.000285
ORF7a34P34LcCtcTt22AY.1140.000462
ORF7a34P34LcCtcTt22AY.130.000322
ORF7a34P34LcCtcTt22AY.140.000176
ORF7a34P34LcCtcTt22AY.170.016393
ORF7a34P34LcCtcTt22AY.34.10.00102
ORF7a34P34LcCtcTt22AY.370.000632
ORF7a34P34LcCtcTt22AY.4.2.10.000298
ORF7a34P34LcCtcTt22AY.4.40.000818
ORF7a34P34LcCtcTt22AY.4.50.000215
ORF7a34P34LcCtcTt22AY.46.40.000329
ORF7a34P34LcCtcTt22AY.46.50.000397
ORF7a34P34LcCtcTt22AY.600.001876
ORF7a34P34LcCtcTt22AY.7.20.001119
ORF7a34P34LcCtcTt22AY.700.000417
ORF7a34P34LcCtcTt22AY.730.001331
ORF7a34P34LcCtcTt22AY.750.000112
ORF7a34P34LcCtcTt22AY.900.001369
ORF7a34P34LcCtcTt22B.1.1.10.000653
ORF7a34P34LcCtcTt22B.1.1.2410.004141
ORF7a34P34LcCtcTt22B.1.1.370.000386
ORF7a34P34LcCtcTt22B.1.1.3720.001377
ORF7a34P34LcCtcTt22B.1.1.440.004819
ORF7a34P34LcCtcTt22B.1.1.4860.003155
ORF7a34P34LcCtcTt22B.1.177.210.000153
ORF7a34P34LcCtcTt22B.1.214.30.014286
ORF7a34P34LcCtcTt22B.1.2410.001623
ORF7a34P34LcCtcTt22B.1.36.10.002281
ORF7a34P34LcCtcTt22B.1.36.220.002415
ORF7a34P34LcCtcTt22B.1.3610.002577
ORF7a34P34LcCtcTt22C.10.004785
ORF7a34P34LcCtcTt22C.140.008658
ORF7a34P34LcCtcTt22P.1.40.001953
ORF7a34P34LcCtcTt11A0.000387
ORF7a34P34LcCtcTt11A.2.20.001689
ORF7a34P34LcCtcTt11A.2.50.000499
ORF7a34P34LcCtcTt11A.2.5.20.001572
ORF7a34P34LcCtcTt11AB.10.008197
ORF7a34P34LcCtcTt11AY.10.000396
ORF7a34P34LcCtcTt11AY.1010.00049
ORF7a34P34LcCtcTt11AY.1060.000335
ORF7a34P34LcCtcTt11AY.1070.000466
ORF7a34P34LcCtcTt11AY.1160.000287
ORF7a34P34LcCtcTt11AY.120.10.000321
ORF7a34P34LcCtcTt11AY.20.000356
ORF7a34P34LcCtcTt11AY.23.10.000417
ORF7a34P34LcCtcTt11AY.29.10.000221
ORF7a34P34LcCtcTt11AY.380.000499
ORF7a34P34LcCtcTt11AY.46.30.000934
ORF7a34P34LcCtcTt11AY.480.000465
ORF7a34P34LcCtcTt11AY.5.30.000337
ORF7a34P34LcCtcTt11AY.510.000909
ORF7a34P34LcCtcTt11AY.590.00053
ORF7a34P34LcCtcTt11AY.620.000436
ORF7a34P34LcCtcTt11AY.650.000533
ORF7a34P34LcCtcTt11AY.800.001129
ORF7a34P34LcCtcTt11AY.810.001992
ORF7a34P34LcCtcTt11AY.820.001357
ORF7a34P34LcCtcTt11AY.840.000437
ORF7a34P34LcCtcTt11AY.860.00083
ORF7a34P34LcCtcTt11AY.890.004902
ORF7a34P34LcCtcTt11AY.91.10.004065
ORF7a34P34LcCtcTt11AY.930.000273
ORF7a34P34LcCtcTt11AY.950.000761
ORF7a34P34LcCtcTt11AY.990.001049
ORF7a34P34LcCtcTt11AY.99.10.001553
ORF7a34P34LcCtcTt11AZ.10.000867
ORF7a34P34LcCtcTt11B.1.1.1210.002427
ORF7a34P34LcCtcTt11B.1.1.1390.022727
ORF7a34P34LcCtcTt11B.1.1.1760.000439
ORF7a34P34LcCtcTt11B.1.1.1890.001513
ORF7a34P34LcCtcTt11B.1.1.1920.002309
ORF7a34P34LcCtcTt11B.1.1.2200.001859
ORF7a34P34LcCtcTt11B.1.1.250.000569
ORF7a34P34LcCtcTt11B.1.1.2630.001558
ORF7a34P34LcCtcTt11B.1.1.2650.003155
ORF7a34P34LcCtcTt11B.1.1.2740.005051
ORF7a34P34LcCtcTt11B.1.1.2880.001916
ORF7a34P34LcCtcTt11B.1.1.2890.002083
ORF7a34P34LcCtcTt11B.1.1.2940.001266
ORF7a34P34LcCtcTt11B.1.1.3180.000302
ORF7a34P34LcCtcTt11B.1.1.3260.001761
ORF7a34P34LcCtcTt11B.1.1.330.000421
ORF7a34P34LcCtcTt11B.1.1.3540.004386
ORF7a34P34LcCtcTt11B.1.1.3980.003226
ORF7a34P34LcCtcTt11B.1.1.450.014085
ORF7a34P34LcCtcTt11B.1.1.630.000386
ORF7a34P34LcCtcTt11B.1.1.700.000341
ORF7a34P34LcCtcTt11B.1.1.80.003584
ORF7a34P34LcCtcTt11B.1.1110.001175
ORF7a34P34LcCtcTt11B.1.1470.000756
ORF7a34P34LcCtcTt11B.1.177.150.000631
ORF7a34P34LcCtcTt11B.1.177.170.000821
ORF7a34P34LcCtcTt11B.1.177.240.001295
ORF7a34P34LcCtcTt11B.1.177.320.00135
ORF7a34P34LcCtcTt11B.1.177.430.001477
ORF7a34P34LcCtcTt11B.1.177.500.004695
ORF7a34P34LcCtcTt11B.1.177.540.000606
ORF7a34P34LcCtcTt11B.1.177.70.000165
ORF7a34P34LcCtcTt11B.1.177.730.000566
ORF7a34P34LcCtcTt11B.1.177.800.001912
ORF7a34P34LcCtcTt11B.1.177.810.000189
ORF7a34P34LcCtcTt11B.1.1890.004292
ORF7a34P34LcCtcTt11B.1.214.10.02
ORF7a34P34LcCtcTt11B.1.214.20.0006
ORF7a34P34LcCtcTt11B.1.2450.03125
ORF7a34P34LcCtcTt11B.1.2520.006623
ORF7a34P34LcCtcTt11B.1.2670.018519
ORF7a34P34LcCtcTt11B.1.3050.002151
ORF7a34P34LcCtcTt11B.1.3360.002439
ORF7a34P34LcCtcTt11B.1.3380.008621
ORF7a34P34LcCtcTt11B.1.3490.000715
ORF7a34P34LcCtcTt11B.1.360.000146
ORF7a34P34LcCtcTt11B.1.36.100.004785
ORF7a34P34LcCtcTt11B.1.36.190.009259
ORF7a34P34LcCtcTt11B.1.36.290.000517
ORF7a34P34LcCtcTt11B.1.36.310.001751
ORF7a34P34LcCtcTt11B.1.3690.000285
ORF7a34P34LcCtcTt11B.1.3750.00082
ORF7a34P34LcCtcTt11B.1.4160.001269
ORF7a34P34LcCtcTt11B.1.4210.007463
ORF7a34P34LcCtcTt11B.1.466.20.000391
ORF7a34P34LcCtcTt11B.1.4710.002732
ORF7a34P34LcCtcTt11B.1.5170.000427
ORF7a34P34LcCtcTt11B.1.5610.000397
ORF7a34P34LcCtcTt11B.1.5700.002941
ORF7a34P34LcCtcTt11B.1.5750.000303
ORF7a34P34LcCtcTt11B.1.6090.000479
ORF7a34P34LcCtcTt11B.1.6230.000536
ORF7a34P34LcCtcTt11B.1.6260.005714
ORF7a34P34LcCtcTt11B.1.940.027027
ORF7a34P34LcCtcTt11B.4.70.010101
ORF7a34P34LcCtcTt11B.580.010204
ORF7a34P34LcCtcTt11B.6.60.000889
ORF7a34P34LcCtcTt11C.160.00106
ORF7a34P34LcCtcTt11C.300.001727
ORF7a34P34LcCtcTt11C.36.30.000567
ORF7a34P34LcCtcTt11N.90.005952
ORF7a34P34LcCtcTt11P.1.170.000162
ORF7a34P34LcCtcTt11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.