CoV-GLUE | Mutations | Mutation
CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 34 & Codon = ---
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
| ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
| ORF7a | 34 | P34del | del | CCT | --- | 1241 | 1241 | 1 | 27493-27495 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
| ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
| ORF7a | 34 | P34del | CCT | --- | 1241 | 1241 | All | 0.000237 |
| ORF7a | 34 | P34del | CCT | --- | 303 | 303 | AY.4 | 0.000472 |
| ORF7a | 34 | P34del | CCT | --- | 276 | 276 | B.1.1.7 | 0.000247 |
| ORF7a | 34 | P34del | CCT | --- | 179 | 179 | B.1.177.21 | 0.013688 |
| ORF7a | 34 | P34del | CCT | --- | 64 | 64 | AY.25 | 0.000385 |
| ORF7a | 34 | P34del | CCT | --- | 43 | 43 | AY.3 | 0.000428 |
| ORF7a | 34 | P34del | CCT | --- | 38 | 38 | AY.29 | 0.000599 |
| ORF7a | 34 | P34del | CCT | --- | 34 | 34 | AY.44 | 0.000207 |
| ORF7a | 34 | P34del | CCT | --- | 29 | 29 | AY.103 | 0.00018 |
| ORF7a | 34 | P34del | CCT | --- | 21 | 21 | U.1 | 0.269231 |
| ORF7a | 34 | P34del | CCT | --- | 16 | 16 | AY.7.2 | 0.008949 |
| ORF7a | 34 | P34del | CCT | --- | 15 | 15 | B.1.1.214 | 0.000832 |
| ORF7a | 34 | P34del | CCT | --- | 14 | 14 | AY.43 | 0.000062 |
| ORF7a | 34 | P34del | CCT | --- | 13 | 13 | B.1.617.2 | 0.000049 |
| ORF7a | 34 | P34del | CCT | --- | 9 | 9 | AY.39 | 0.000222 |
| ORF7a | 34 | P34del | CCT | --- | 9 | 9 | B.1 | 0.000082 |
| ORF7a | 34 | P34del | CCT | --- | 9 | 9 | B.1.1.284 | 0.000967 |
| ORF7a | 34 | P34del | CCT | --- | 9 | 9 | C.37 | 0.001045 |
| ORF7a | 34 | P34del | CCT | --- | 9 | 9 | P.1 | 0.000142 |
| ORF7a | 34 | P34del | CCT | --- | 7 | 7 | AY.47 | 0.000218 |
| ORF7a | 34 | P34del | CCT | --- | 7 | 7 | B.1.2 | 0.000062 |
| ORF7a | 34 | P34del | CCT | --- | 6 | 6 | B.1.177.44 | 0.003114 |
| ORF7a | 34 | P34del | CCT | --- | 5 | 5 | AY.20 | 0.000194 |
| ORF7a | 34 | P34del | CCT | --- | 5 | 5 | B.1.429 | 0.000118 |
| ORF7a | 34 | P34del | CCT | --- | 5 | 5 | B.1.526 | 0.000118 |
| ORF7a | 34 | P34del | CCT | --- | 4 | 4 | AY.100 | 0.000184 |
| ORF7a | 34 | P34del | CCT | --- | 4 | 4 | AY.121 | 0.000541 |
| ORF7a | 34 | P34del | CCT | --- | 4 | 4 | AY.26 | 0.000113 |
| ORF7a | 34 | P34del | CCT | --- | 4 | 4 | AY.98.1 | 0.000194 |
| ORF7a | 34 | P34del | CCT | --- | 4 | 4 | B.1.637 | 0.000292 |
| ORF7a | 34 | P34del | CCT | --- | 3 | 3 | AY.106 | 0.001005 |
| ORF7a | 34 | P34del | CCT | --- | 3 | 3 | AY.118 | 0.000188 |
| ORF7a | 34 | P34del | CCT | --- | 3 | 3 | B.1.1.25 | 0.001706 |
| ORF7a | 34 | P34del | CCT | --- | 3 | 3 | B.1.234 | 0.000396 |
| ORF7a | 34 | P34del | CCT | --- | 3 | 3 | B.1.351 | 0.000089 |
| ORF7a | 34 | P34del | CCT | --- | 3 | 3 | B.1.626 | 0.017143 |
| ORF7a | 34 | P34del | CCT | --- | 3 | 3 | Q.8 | 0.000495 |
| ORF7a | 34 | P34del | CCT | --- | 2 | 2 | A.28 | 0.005291 |
| ORF7a | 34 | P34del | CCT | --- | 2 | 2 | AY.119 | 0.000071 |
| ORF7a | 34 | P34del | CCT | --- | 2 | 2 | AY.29.1 | 0.000441 |
| ORF7a | 34 | P34del | CCT | --- | 2 | 2 | AY.33 | 0.000134 |
| ORF7a | 34 | P34del | CCT | --- | 2 | 2 | AY.42 | 0.00008 |
| ORF7a | 34 | P34del | CCT | --- | 2 | 2 | AY.75 | 0.000112 |
| ORF7a | 34 | P34del | CCT | --- | 2 | 2 | AY.9 | 0.000135 |
| ORF7a | 34 | P34del | CCT | --- | 2 | 2 | B.1.1 | 0.000036 |
| ORF7a | 34 | P34del | CCT | --- | 2 | 2 | B.1.177 | 0.000026 |
| ORF7a | 34 | P34del | CCT | --- | 2 | 2 | B.1.177.86 | 0.000367 |
| ORF7a | 34 | P34del | CCT | --- | 2 | 2 | B.1.258 | 0.000133 |
| ORF7a | 34 | P34del | CCT | --- | 2 | 2 | B.1.258.11 | 0.000793 |
| ORF7a | 34 | P34del | CCT | --- | 2 | 2 | B.1.36 | 0.000292 |
| ORF7a | 34 | P34del | CCT | --- | 2 | 2 | C.36.3 | 0.001134 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | A | 0.000387 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | AY.108 | 0.001103 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | AY.110 | 0.000113 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | AY.113 | 0.000142 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | AY.120 | 0.000037 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | AY.120.1 | 0.000321 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | AY.19 | 0.00114 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | AY.34 | 0.000097 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | AY.34.1 | 0.00051 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | AY.39.1 | 0.00004 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | AY.4.2 | 0.000022 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | AY.45 | 0.000122 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | AY.5 | 0.000021 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | AY.5.4 | 0.000277 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | AY.54 | 0.000095 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | AY.6 | 0.000041 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | AY.66 | 0.00107 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | AY.7.1 | 0.000113 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | AY.76 | 0.004831 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | AY.79 | 0.001211 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | AY.9.1 | 0.000084 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | AY.99.2 | 0.000092 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | B.1.1.207 | 0.001182 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | B.1.1.222 | 0.000204 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | B.1.1.519 | 0.00004 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | B.1.1.522 | 0.017241 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | B.1.115 | 0.021739 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | B.1.160 | 0.000031 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | B.1.177.80 | 0.001912 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | B.1.177.81 | 0.000189 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | B.1.221 | 0.000071 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | B.1.240 | 0.000216 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | B.1.258.17 | 0.000104 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | B.1.427 | 0.00005 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | B.1.438.1 | 0.000107 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | B.1.459 | 0.004082 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | B.1.466.2 | 0.000391 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | B.1.468 | 0.005714 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | B.1.470 | 0.001404 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | B.1.596 | 0.000087 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | B.1.617.3 | 0.002985 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | B.1.620 | 0.000946 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | B.1.630 | 0.005236 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | B.1.636 | 0.006711 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | Q.2 | 0.000613 |
| ORF7a | 34 | P34del | CCT | --- | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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