CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 33

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a33E33deldelGAA---11391139127490-27492
ORF7a33E33EsyngaAgaG614614127490-27492
ORF7a33E33XnonsynGaaTaa287287127490-27492
ORF7a33E33KnonsynGaaAaa223223127490-27492
ORF7a33E33VnonsyngAagTa1521510.99342127490-27492
ORF7a33E33VnonsyngAAgTG15210.0065789527490-27492
ORF7a33E33QnonsynGaaCaa110110127490-27492
ORF7a33E33GnonsyngAagGa9696127490-27492
ORF7a33E33del2delgAAg--3535127490-27492
ORF7a33E33DnonsyngaAgaC27250.92592627490-27492
ORF7a33E33DnonsyngaAgaT2720.074074127490-27492
ORF7a33E33AnonsyngAagCa2525127490-27492
ORF7a33E33del1delgaAga-25210.8427490-27492
ORF7a33E33del1delgAag-a2530.1227490-27492
ORF7a33E33del1delGaa-aa2510.0427490-27492
ORF7a33E33RnonsynGAaAGa33127490-27492
ORF7a33E33LnonsynGAaTTa320.66666727490-27492
ORF7a33E33LnonsynGAaCTa310.33333327490-27492
ORF7a33E33NnonsynGaAAaC22127490-27492
ORF7a33E33InonsynGAAATT11127490-27492

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a33E33delGAA---11391139All0.000218
ORF7a33E33EgaAgaG614614All0.000117
ORF7a33E33EgaAgaG455455B.1.1.70.000407
ORF7a33E33XGaaTaa287287All0.000055
ORF7a33E33delGAA---271271AY.40.000422
ORF7a33E33delGAA---271271B.1.1.70.000243
ORF7a33E33KGaaAaa223223All0.000043
ORF7a33E33delGAA---179179B.1.177.210.013688
ORF7a33E33VgAagTa151152All0.000029
ORF7a33E33VgAAgTG1152All0
ORF7a33E33XGaaTaa115115B.1.1.70.000103
ORF7a33E33QGaaCaa110110All0.000021
ORF7a33E33GgAagGa9696All0.000018
ORF7a33E33VgAagTa8383AB.10.680328
ORF7a33E33QGaaCaa3838AY.1200.001413
ORF7a33E33delGAA---3838AY.290.000599
ORF7a33E33delGAA---3636AY.250.000217
ORF7a33E33del2gAAg--3535All0.000007
ORF7a33E33KGaaAaa3333AY.40.000051
ORF7a33E33VgAagTa3232AY.30.000318
ORF7a33E33delGAA---3232AY.30.000318
ORF7a33E33GgAagGa2929AY.430.000128
ORF7a33E33QGaaCaa2828AY.1030.000174
ORF7a33E33KGaaAaa2828B.1.617.20.000105
ORF7a33E33DgaAgaC2527All0.000005
ORF7a33E33DgaAgaT227All0
ORF7a33E33XGaaTaa2626AY.250.000156
ORF7a33E33del2gAAg--2626AY.250.000156
ORF7a33E33GgAagGa2626AY.290.00041
ORF7a33E33AgAagCa2525All0.000005
ORF7a33E33del1gaAga-2125All0.000004
ORF7a33E33del1gAag-a325All0.000001
ORF7a33E33del1Gaa-aa125All0
ORF7a33E33delGAA---2525AY.1030.000155
ORF7a33E33KGaaAaa2424AY.260.000679
ORF7a33E33delGAA---2424AY.440.000146
ORF7a33E33KGaaAaa2323B.1.1.70.000021
ORF7a33E33EgaAgaG2323B.1.4290.000541
ORF7a33E33XGaaTaa2222AY.40.000034
ORF7a33E33delGAA---2121U.10.269231
ORF7a33E33EgaAgaG2020B.1.617.20.000075
ORF7a33E33EgaAgaG1919AY.340.001842
ORF7a33E33del1gaAga-1718AY.40.000026
ORF7a33E33del1gAag-a118AY.40.000002
ORF7a33E33delGAA---1616AY.7.20.008949
ORF7a33E33VgAagTa1616B.1.10.00029
ORF7a33E33delGAA---1414B.1.1.2140.000776
ORF7a33E33DgaAgaC1414B.1.1.70.000013
ORF7a33E33QGaaCaa1212AY.40.000019
ORF7a33E33delGAA---1212AY.430.000053
ORF7a33E33delGAA---1212B.1.617.20.000045
ORF7a33E33XGaaTaa1111AY.1030.000068
ORF7a33E33AgAagCa1111AY.440.000067
ORF7a33E33XGaaTaa1010AY.1020.000265
ORF7a33E33EgaAgaG1010AY.290.000158
ORF7a33E33EgaAgaG1010AY.30.000099
ORF7a33E33QGaaCaa1010AY.39.10.000396
ORF7a33E33EgaAgaG99AY.40.000014
ORF7a33E33delGAA---99B.10.000082
ORF7a33E33delGAA---99B.1.1.2840.000967
ORF7a33E33GgAagGa99B.1.1.70.000008
ORF7a33E33delGAA---99C.370.001045
ORF7a33E33delGAA---99P.10.000142
ORF7a33E33EgaAgaG88AY.250.000048
ORF7a33E33XGaaTaa88AY.390.000198
ORF7a33E33delGAA---88AY.390.000198
ORF7a33E33XGaaTaa88AY.4.20.000174
ORF7a33E33XGaaTaa88AY.440.000049
ORF7a33E33KGaaAaa88B.1.2580.000532
ORF7a33E33QGaaCaa77AY.440.000043
ORF7a33E33XGaaTaa77B.10.000064
ORF7a33E33delGAA---77B.1.20.000062
ORF7a33E33XGaaTaa77B.1.617.20.000026
ORF7a33E33GgAagGa66AY.40.000009
ORF7a33E33delGAA---66AY.470.000187
ORF7a33E33EgaAgaG66B.10.000055
ORF7a33E33delGAA---66B.1.177.440.003114
ORF7a33E33KGaaAaa55AY.1030.000031
ORF7a33E33KGaaAaa55AY.1190.000177
ORF7a33E33KGaaAaa55B.10.000046
ORF7a33E33KGaaAaa55B.1.1770.000066
ORF7a33E33EgaAgaG55B.1.20.000044
ORF7a33E33delGAA---55B.1.4290.000118
ORF7a33E33KGaaAaa44AP.10.006006
ORF7a33E33delGAA---44AY.1000.000184
ORF7a33E33delGAA---44AY.1180.000251
ORF7a33E33delGAA---44AY.1210.000541
ORF7a33E33delGAA---44AY.200.000155
ORF7a33E33delGAA---44AY.260.000113
ORF7a33E33XGaaTaa44AY.260.000113
ORF7a33E33EgaAgaG44AY.430.000018
ORF7a33E33DgaAgaC44AY.430.000018
ORF7a33E33KGaaAaa44AY.430.000018
ORF7a33E33XGaaTaa44AY.430.000018
ORF7a33E33KGaaAaa44AY.440.000024
ORF7a33E33delGAA---44AY.98.10.000194
ORF7a33E33EgaAgaG44B.1.177.440.002076
ORF7a33E33KGaaAaa44B.1.177.830.005926
ORF7a33E33KGaaAaa44B.1.20.000035
ORF7a33E33delGAA---44B.1.5260.000094
ORF7a33E33delGAA---44B.1.6370.000292
ORF7a33E33RGAaAGa33All0.000001
ORF7a33E33LGAaTTa23All0
ORF7a33E33LGAaCTa13All0
ORF7a33E33del2gAAg--33AY.1030.000019
ORF7a33E33KGaaAaa33AY.1060.001005
ORF7a33E33delGAA---33AY.330.0002
ORF7a33E33KGaaAaa33AY.4.20.000065
ORF7a33E33AgAagCa33AY.50.000062
ORF7a33E33VgAagTa33AY.5.30.001012
ORF7a33E33KGaaAaa33AY.5.40.00083
ORF7a33E33XGaaTaa33AY.60.000123
ORF7a33E33EgaAgaG33AY.610.000314
ORF7a33E33QGaaCaa33AY.9.20.00011
ORF7a33E33GgAagGa33B.1.10.000054
ORF7a33E33delGAA---33B.1.1.250.001706
ORF7a33E33VgAagTa33B.1.1.70.000003
ORF7a33E33GgAagGa33B.1.1770.00004
ORF7a33E33EgaAgaG33B.1.1770.00004
ORF7a33E33KGaaAaa33B.1.177.770.002179
ORF7a33E33KGaaAaa33B.1.2210.000213
ORF7a33E33delGAA---33B.1.2340.000396
ORF7a33E33delGAA---33B.1.3510.000089
ORF7a33E33EgaAgaG33B.1.3510.000089
ORF7a33E33KGaaAaa33B.1.4030.009804
ORF7a33E33EgaAgaG33B.1.429.10.036145
ORF7a33E33delGAA---33B.1.6260.017143
ORF7a33E33GgAagGa33P.10.000047
ORF7a33E33EgaAgaG33P.1.150.000697
ORF7a33E33delGAA---33Q.80.000495
ORF7a33E33delGAA---22A.280.005291
ORF7a33E33NGaAAaC22All0
ORF7a33E33XGaaTaa22AY.1010.000981
ORF7a33E33QGaaCaa22AY.1020.000053
ORF7a33E33DgaAgaC12AY.1030.000006
ORF7a33E33DgaAgaT12AY.1030.000006
ORF7a33E33XGaaTaa22AY.1170.000169
ORF7a33E33delGAA---22AY.1190.000071
ORF7a33E33KGaaAaa22AY.120.10.000642
ORF7a33E33KGaaAaa22AY.230.000139
ORF7a33E33KGaaAaa22AY.250.000012
ORF7a33E33RGAaAGa22AY.250.000012
ORF7a33E33DgaAgaC22AY.250.000012
ORF7a33E33delGAA---22AY.29.10.000441
ORF7a33E33KGaaAaa22AY.30.00002
ORF7a33E33VgAagTa22AY.39.10.000079
ORF7a33E33del2gAAg--22AY.40.000003
ORF7a33E33VgAagTa22AY.40.000003
ORF7a33E33EgaAgaG22AY.420.00008
ORF7a33E33VgAagTa22AY.430.000009
ORF7a33E33GgAagGa22AY.440.000012
ORF7a33E33KGaaAaa22AY.460.000208
ORF7a33E33AgAagCa22AY.470.000062
ORF7a33E33VgAagTa22AY.470.000062
ORF7a33E33delGAA---22AY.750.000112
ORF7a33E33EgaAgaG22AY.75.10.000361
ORF7a33E33delGAA---22AY.90.000135
ORF7a33E33XGaaTaa22AY.99.20.000184
ORF7a33E33XGaaTaa22B0.000256
ORF7a33E33delGAA---22B.1.10.000036
ORF7a33E33KGaaAaa22B.1.1.2050.007435
ORF7a33E33AgAagCa22B.1.1.70.000002
ORF7a33E33LGAaCTa12B.1.1.70.000001
ORF7a33E33LGAaTTa12B.1.1.70.000001
ORF7a33E33delGAA---22B.1.1600.000062
ORF7a33E33XGaaTaa22B.1.1770.000026
ORF7a33E33KGaaAaa22B.1.177.420.001789
ORF7a33E33delGAA---22B.1.177.860.000367
ORF7a33E33delGAA---22B.1.2580.000133
ORF7a33E33delGAA---22B.1.258.110.000793
ORF7a33E33KGaaAaa22B.1.3510.000059
ORF7a33E33delGAA---22B.1.360.000292
ORF7a33E33KGaaAaa22B.1.4290.000047
ORF7a33E33KGaaAaa22B.1.5260.000047
ORF7a33E33KGaaAaa22B.1.5950.000522
ORF7a33E33EgaAgaG22B.1.617.10.000258
ORF7a33E33QGaaCaa22B.1.617.20.000008
ORF7a33E33EgaAgaG22B.1.6370.000146
ORF7a33E33delGAA---22C.36.30.001134
ORF7a33E33EgaAgaG22P.10.000032
ORF7a33E33XGaaTaa22P.10.000032
ORF7a33E33QGaaCaa22P.10.000032
ORF7a33E33delGAA---11A0.000387
ORF7a33E33XGaaTaa11A0.000387
ORF7a33E33XGaaTaa11A.10.000282
ORF7a33E33XGaaTaa11A.2.20.001689
ORF7a33E33IGAAATT11All0
ORF7a33E33DgaAgaC11AY.1000.000046
ORF7a33E33KGaaAaa11AY.1010.00049
ORF7a33E33KGaaAaa11AY.1020.000027
ORF7a33E33EgaAgaG11AY.1030.000006
ORF7a33E33GgAagGa11AY.1030.000006
ORF7a33E33AgAagCa11AY.1030.000006
ORF7a33E33delGAA---11AY.1080.001103
ORF7a33E33XGaaTaa11AY.1090.00074
ORF7a33E33delGAA---11AY.1100.000113
ORF7a33E33delGAA---11AY.1130.000142
ORF7a33E33KGaaAaa11AY.1160.000287
ORF7a33E33XGaaTaa11AY.1160.000287
ORF7a33E33VgAagTa11AY.1170.000085
ORF7a33E33KGaaAaa11AY.1180.000063
ORF7a33E33XGaaTaa11AY.1190.000035
ORF7a33E33EgaAgaG11AY.1190.000035
ORF7a33E33EgaAgaG11AY.1200.000037
ORF7a33E33AgAagCa11AY.1200.000037
ORF7a33E33delGAA---11AY.120.10.000321
ORF7a33E33VgAagTa11AY.160.00038
ORF7a33E33EgaAgaG11AY.16.10.00047
ORF7a33E33XGaaTaa11AY.16.10.00047
ORF7a33E33EgaAgaG11AY.190.00114
ORF7a33E33delGAA---11AY.190.00114
ORF7a33E33XGaaTaa11AY.20.000356
ORF7a33E33del1gaAga-11AY.200.000039
ORF7a33E33EgaAgaG11AY.200.000039
ORF7a33E33QGaaCaa11AY.23.10.000417
ORF7a33E33KGaaAaa11AY.240.000431
ORF7a33E33AgAagCa11AY.250.000006
ORF7a33E33QGaaCaa11AY.250.000006
ORF7a33E33GgAagGa11AY.250.000006
ORF7a33E33EgaAgaG11AY.270.000065
ORF7a33E33XGaaTaa11AY.280.00189
ORF7a33E33XGaaTaa11AY.290.000016
ORF7a33E33KGaaAaa11AY.29.10.000221
ORF7a33E33GgAagGa11AY.29.10.000221
ORF7a33E33XGaaTaa11AY.30.00001
ORF7a33E33del1gaAga-11AY.30.00001
ORF7a33E33IGAAATT11AY.30.00001
ORF7a33E33NGaAAaC11AY.30.00001
ORF7a33E33del2gAAg--11AY.30.00001
ORF7a33E33QGaaCaa11AY.30.00001
ORF7a33E33XGaaTaa11AY.300.000396
ORF7a33E33XGaaTaa11AY.320.000532
ORF7a33E33delGAA---11AY.340.000097
ORF7a33E33KGaaAaa11AY.34.10.00051
ORF7a33E33delGAA---11AY.34.10.00051
ORF7a33E33XGaaTaa11AY.360.000148
ORF7a33E33KGaaAaa11AY.390.000025
ORF7a33E33QGaaCaa11AY.390.000025
ORF7a33E33delGAA---11AY.39.10.00004
ORF7a33E33DgaAgaC11AY.40.000002
ORF7a33E33delGAA---11AY.4.20.000022
ORF7a33E33XGaaTaa11AY.410.000294
ORF7a33E33DgaAgaC11AY.420.00004
ORF7a33E33KGaaAaa11AY.420.00004
ORF7a33E33delGAA---11AY.420.00004
ORF7a33E33XGaaTaa11AY.420.00004
ORF7a33E33QGaaCaa11AY.430.000004
ORF7a33E33del2gAAg--11AY.430.000004
ORF7a33E33AgAagCa11AY.430.000004
ORF7a33E33VgAagTa11AY.440.000006
ORF7a33E33del2gAAg--11AY.440.000006
ORF7a33E33EgaAgaG11AY.440.000006
ORF7a33E33GgAagGa11AY.450.000122
ORF7a33E33delGAA---11AY.450.000122
ORF7a33E33EgaAgaG11AY.450.000122
ORF7a33E33EgaAgaG11AY.46.60.000072
ORF7a33E33KGaaAaa11AY.46.60.000072
ORF7a33E33XGaaTaa11AY.470.000031
ORF7a33E33delGAA---11AY.50.000021
ORF7a33E33XGaaTaa11AY.50.000021
ORF7a33E33delGAA---11AY.5.40.000277
ORF7a33E33XGaaTaa11AY.520.000814
ORF7a33E33delGAA---11AY.540.000095
ORF7a33E33EgaAgaG11AY.550.000917
ORF7a33E33EgaAgaG11AY.560.001605
ORF7a33E33delGAA---11AY.60.000041
ORF7a33E33delGAA---11AY.660.00107
ORF7a33E33XGaaTaa11AY.70.000196
ORF7a33E33delGAA---11AY.7.10.000113
ORF7a33E33XGaaTaa11AY.7.20.000559
ORF7a33E33EgaAgaG11AY.720.001361
ORF7a33E33KGaaAaa11AY.730.000665
ORF7a33E33delGAA---11AY.760.004831
ORF7a33E33XGaaTaa11AY.770.001127
ORF7a33E33delGAA---11AY.790.001211
ORF7a33E33delGAA---11AY.9.10.000084
ORF7a33E33EgaAgaG11AY.9.20.000037
ORF7a33E33XGaaTaa11AY.9.20.000037
ORF7a33E33delGAA---11AY.99.20.000092
ORF7a33E33EgaAgaG11AY.99.20.000092
ORF7a33E33NGaAAaC11B.10.000009
ORF7a33E33DgaAgaC11B.10.000009
ORF7a33E33del1gAag-a11B.10.000009
ORF7a33E33GgAagGa11B.10.000009
ORF7a33E33QGaaCaa11B.10.000009
ORF7a33E33EgaAgaG11B.1.10.000018
ORF7a33E33VgAAgTG11B.1.1.1530.001095
ORF7a33E33delGAA---11B.1.1.2070.001182
ORF7a33E33GgAagGa11B.1.1.2140.000055
ORF7a33E33delGAA---11B.1.1.2220.000204
ORF7a33E33KGaaAaa11B.1.1.2770.000759
ORF7a33E33KGaaAaa11B.1.1.2980.000862
ORF7a33E33KGaaAaa11B.1.1.3070.002532
ORF7a33E33KGaaAaa11B.1.1.4160.000905
ORF7a33E33delGAA---11B.1.1.5190.00004
ORF7a33E33delGAA---11B.1.1.5220.017241
ORF7a33E33XGaaTaa11B.1.1.670.004566
ORF7a33E33del2gAAg--11B.1.1.70.000001
ORF7a33E33del1gaAga-11B.1.1.70.000001
ORF7a33E33XGaaTaa11B.1.1.700.000341
ORF7a33E33delGAA---11B.1.1150.021739
ORF7a33E33KGaaAaa11B.1.1280.000635
ORF7a33E33XGaaTaa11B.1.1600.000031
ORF7a33E33VgAagTa11B.1.1600.000031
ORF7a33E33KGaaAaa11B.1.160.160.000929
ORF7a33E33AgAagCa11B.1.1770.000013
ORF7a33E33delGAA---11B.1.1770.000013
ORF7a33E33GgAagGa11B.1.177.600.000218
ORF7a33E33LGAaTTa11B.1.177.630.002703
ORF7a33E33del1Gaa-aa11B.1.177.690.001484
ORF7a33E33delGAA---11B.1.177.800.001912
ORF7a33E33delGAA---11B.1.177.810.000189
ORF7a33E33delGAA---11B.1.177.830.001481
ORF7a33E33AgAagCa11B.1.1890.004292
ORF7a33E33del1gAag-a11B.1.20.000009
ORF7a33E33XGaaTaa11B.1.20.000009
ORF7a33E33GgAagGa11B.1.20.000009
ORF7a33E33XGaaTaa11B.1.2210.000071
ORF7a33E33delGAA---11B.1.2210.000071
ORF7a33E33XGaaTaa11B.1.2360.002053
ORF7a33E33delGAA---11B.1.2400.000216
ORF7a33E33KGaaAaa11B.1.2430.00007
ORF7a33E33XGaaTaa11B.1.2580.000067
ORF7a33E33GgAagGa11B.1.2580.000067
ORF7a33E33KGaaAaa11B.1.2810.021739
ORF7a33E33XGaaTaa11B.1.3510.00003
ORF7a33E33XGaaTaa11B.1.36.80.001
ORF7a33E33XGaaTaa11B.1.4130.004255
ORF7a33E33delGAA---11B.1.4270.00005
ORF7a33E33GgAagGa11B.1.4290.000024
ORF7a33E33XGaaTaa11B.1.4290.000024
ORF7a33E33delGAA---11B.1.438.10.000107
ORF7a33E33XGaaTaa11B.1.438.10.000107
ORF7a33E33delGAA---11B.1.4590.004082
ORF7a33E33delGAA---11B.1.466.20.000391
ORF7a33E33VgAagTa11B.1.466.20.000391
ORF7a33E33delGAA---11B.1.4680.005714
ORF7a33E33delGAA---11B.1.4700.001404
ORF7a33E33RGAaAGa11B.1.5260.000024
ORF7a33E33GgAagGa11B.1.5260.000024
ORF7a33E33XGaaTaa11B.1.5260.000024
ORF7a33E33XGaaTaa11B.1.5610.000397
ORF7a33E33KGaaAaa11B.1.5760.000907
ORF7a33E33XGaaTaa11B.1.5960.000087
ORF7a33E33KGaaAaa11B.1.5960.000087
ORF7a33E33delGAA---11B.1.5960.000087
ORF7a33E33KGaaAaa11B.1.6090.000479
ORF7a33E33XGaaTaa11B.1.6120.002653
ORF7a33E33del1gaAga-11B.1.617.20.000004
ORF7a33E33VgAagTa11B.1.617.20.000004
ORF7a33E33GgAagGa11B.1.617.20.000004
ORF7a33E33delGAA---11B.1.617.30.002985
ORF7a33E33delGAA---11B.1.6200.000946
ORF7a33E33XGaaTaa11B.1.6210.000089
ORF7a33E33XGaaTaa11B.1.6230.000536
ORF7a33E33delGAA---11B.1.6300.005236
ORF7a33E33delGAA---11B.1.6360.006711
ORF7a33E33KGaaAaa11B.1.6390.021739
ORF7a33E33GgAagGa11B.400.000364
ORF7a33E33GgAagGa11B.6.60.000889
ORF7a33E33KGaaAaa11C.36.30.000567
ORF7a33E33XGaaTaa11C.370.000116
ORF7a33E33DgaAgaT11C.370.000116
ORF7a33E33GgAagGa11C.370.000116
ORF7a33E33KGaaAaa11P.10.000016
ORF7a33E33AgAagCa11P.10.000016
ORF7a33E33KGaaAaa11P.1.140.000048
ORF7a33E33delGAA---11Q.20.000613
ORF7a33E33KGaaAaa11R.10.00009
ORF7a33E33delGAA---11R.10.00009