CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 32

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF7a	32	K32K		syn	aaA	aaG	1832	1832	1	27487-27489
ORF7a	32	K32N		nonsyn	aaA	aaC	1246	1005	0.806581	27487-27489
ORF7a	32	K32N		nonsyn	aaA	aaT	1246	241	0.193419	27487-27489
ORF7a	32	K32del		del	AAA	---	1111	1111	1	27487-27489
ORF7a	32	K32R		nonsyn	aAa	aGa	293	292	0.996587	27487-27489
ORF7a	32	K32R		nonsyn	AAA	CGG	293	1	0.00341297	27487-27489
ORF7a	32	K32E		nonsyn	Aaa	Gaa	266	255	0.958647	27487-27489
ORF7a	32	K32E		nonsyn	AaA	GaG	266	11	0.0413534	27487-27489
ORF7a	32	K32Q		nonsyn	Aaa	Caa	83	83	1	27487-27489
ORF7a	32	K32I		nonsyn	aAa	aTa	28	25	0.892857	27487-27489
ORF7a	32	K32I		nonsyn	aAA	aTC	28	2	0.0714286	27487-27489
ORF7a	32	K32I		nonsyn	aAA	aTT	28	1	0.0357143	27487-27489
ORF7a	32	K32T		nonsyn	aAa	aCa	19	19	1	27487-27489
ORF7a	32	K32X		nonsyn	Aaa	Taa	12	12	1	27487-27489
ORF7a	32	K32G		nonsyn	AAa	GGa	10	10	1	27487-27489
ORF7a	32	K32del1		del	Aaa	-aa	2	1	0.5	27487-27489
ORF7a	32	K32del1		del	AAA	-NN	2	1	0.5	27487-27489
ORF7a	32	K32L		nonsyn	AAa	TTa	1	1	1	27487-27489
ORF7a	32	K32H		nonsyn	AaA	CaC	1	1	1	27487-27489

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF7a	32	K32K	aaA	aaG	1832	1832	All	0.00035
ORF7a	32	K32N	aaA	aaC	1005	1246	All	0.000192
ORF7a	32	K32N	aaA	aaT	241	1246	All	0.000046
ORF7a	32	K32del	AAA	---	1111	1111	All	0.000212
ORF7a	32	K32K	aaA	aaG	1106	1106	AY.4	0.001721
ORF7a	32	K32N	aaA	aaC	893	899	AY.4	0.00139
ORF7a	32	K32N	aaA	aaT	6	899	AY.4	0.000009
ORF7a	32	K32K	aaA	aaG	360	360	A.28	0.952381
ORF7a	32	K32R	aAa	aGa	292	293	All	0.000056
ORF7a	32	K32R	AAA	CGG	1	293	All	0
ORF7a	32	K32del	AAA	---	271	271	AY.4	0.000422
ORF7a	32	K32del	AAA	---	268	268	B.1.1.7	0.00024
ORF7a	32	K32E	Aaa	Gaa	255	266	All	0.000049
ORF7a	32	K32E	AaA	GaG	11	266	All	0.000002
ORF7a	32	K32del	AAA	---	179	179	B.1.177.21	0.013688
ORF7a	32	K32E	Aaa	Gaa	124	124	AY.25	0.000746
ORF7a	32	K32N	aaA	aaT	86	99	B.1.617.2	0.000324
ORF7a	32	K32N	aaA	aaC	13	99	B.1.617.2	0.000049
ORF7a	32	K32R	aAa	aGa	95	95	B.1.1.7	0.000085
ORF7a	32	K32Q	Aaa	Caa	83	83	All	0.000016
ORF7a	32	K32R	aAa	aGa	80	80	AY.102	0.002121
ORF7a	32	K32K	aaA	aaG	75	75	AY.43	0.000332
ORF7a	32	K32K	aaA	aaG	72	72	AY.103	0.000447
ORF7a	32	K32Q	Aaa	Caa	64	64	AY.44	0.00039
ORF7a	32	K32N	aaA	aaT	53	53	B.1.177.58	0.070573
ORF7a	32	K32K	aaA	aaG	51	51	B.1.617.2	0.000192
ORF7a	32	K32E	Aaa	Gaa	50	50	B.1.1.7	0.000045
ORF7a	32	K32N	aaA	aaC	38	38	AY.43	0.000168
ORF7a	32	K32del	AAA	---	36	36	AY.29	0.000568
ORF7a	32	K32del	AAA	---	34	34	AY.25	0.000205
ORF7a	32	K32del	AAA	---	32	32	AY.3	0.000318
ORF7a	32	K32K	aaA	aaG	32	32	B.1.1.7	0.000029
ORF7a	32	K32I	aAa	aTa	25	28	All	0.000005
ORF7a	32	K32I	aAA	aTC	2	28	All	0
ORF7a	32	K32I	aAA	aTT	1	28	All	0
ORF7a	32	K32del	AAA	---	24	24	AY.103	0.000149
ORF7a	32	K32del	AAA	---	24	24	AY.44	0.000146
ORF7a	32	K32N	aaA	aaT	24	24	B.1.177.16	0.015947
ORF7a	32	K32N	aaA	aaT	23	23	AY.121	0.003112
ORF7a	32	K32R	aAa	aGa	21	21	B.1.617.2	0.000079
ORF7a	32	K32T	aAa	aCa	19	19	All	0.000004
ORF7a	32	K32R	aAa	aGa	17	17	B.1.580	0.069106
ORF7a	32	K32del	AAA	---	16	16	AY.7.2	0.008949
ORF7a	32	K32E	Aaa	Gaa	16	16	P.1	0.000252
ORF7a	32	K32del	AAA	---	15	15	AY.43	0.000066
ORF7a	32	K32I	aAa	aTa	15	15	B.23	0.04386
ORF7a	32	K32E	Aaa	Gaa	14	14	B.1.1.214	0.000776
ORF7a	32	K32del	AAA	---	14	14	B.1.1.214	0.000776
ORF7a	32	K32N	aaA	aaT	12	14	B.1.1.291	0.008909
ORF7a	32	K32N	aaA	aaC	2	14	B.1.1.291	0.001485
ORF7a	32	K32K	aaA	aaG	13	13	B.1	0.000119
ORF7a	32	K32K	aaA	aaG	13	13	B.1.3	0.034031
ORF7a	32	K32X	Aaa	Taa	12	12	All	0.000002
ORF7a	32	K32del	AAA	---	11	11	B.1.617.2	0.000041
ORF7a	32	K32E	AaA	GaG	11	11	D.2	0.000825
ORF7a	32	K32G	AAa	GGa	10	10	All	0.000002
ORF7a	32	K32R	aAa	aGa	10	10	AY.44	0.000061
ORF7a	32	K32E	Aaa	Gaa	10	10	B.1.617.2	0.000038
ORF7a	32	K32del	AAA	---	9	9	B.1	0.000082
ORF7a	32	K32del	AAA	---	9	9	B.1.1.284	0.000967
ORF7a	32	K32del	AAA	---	9	9	C.37	0.001045
ORF7a	32	K32del	AAA	---	9	9	P.1	0.000142
ORF7a	32	K32K	aaA	aaG	8	8	AY.107	0.003728
ORF7a	32	K32G	AAa	GGa	8	8	AY.3	0.00008
ORF7a	32	K32del	AAA	---	8	8	AY.39	0.000198
ORF7a	32	K32T	aAa	aCa	8	8	B.1.1.7	0.000007
ORF7a	32	K32N	aaA	aaC	7	8	B.1.1.7	0.000006
ORF7a	32	K32N	aaA	aaT	1	8	B.1.1.7	0.000001
ORF7a	32	K32del	AAA	---	8	8	B.1.2	0.00007
ORF7a	32	K32N	aaA	aaT	7	7	AY.3.1	0.000597
ORF7a	32	K32K	aaA	aaG	7	7	AY.39	0.000173
ORF7a	32	K32N	aaA	aaC	6	7	AY.39	0.000148
ORF7a	32	K32N	aaA	aaT	1	7	AY.39	0.000025
ORF7a	32	K32N	aaA	aaC	7	7	AY.5	0.000145
ORF7a	32	K32K	aaA	aaG	7	7	B.1.1.63	0.002701
ORF7a	32	K32R	aAa	aGa	7	7	B.1.243	0.000487
ORF7a	32	K32K	aaA	aaG	6	6	A	0.002322
ORF7a	32	K32N	aaA	aaC	5	6	AY.25	0.00003
ORF7a	32	K32N	aaA	aaT	1	6	AY.25	0.000006
ORF7a	32	K32T	aAa	aCa	6	6	AY.4	0.000009
ORF7a	32	K32R	aAa	aGa	6	6	AY.46.4	0.000987
ORF7a	32	K32R	aAa	aGa	6	6	AY.79	0.007264
ORF7a	32	K32del	AAA	---	6	6	B.1.177.44	0.003114
ORF7a	32	K32K	aaA	aaG	6	6	B.1.2	0.000053
ORF7a	32	K32Q	Aaa	Caa	6	6	B.1.351	0.000178
ORF7a	32	K32R	aAa	aGa	5	5	AY.3.1	0.000426
ORF7a	32	K32del	AAA	---	5	5	B.1.429	0.000118
ORF7a	32	K32N	aaA	aaT	4	4	AY.103	0.000025
ORF7a	32	K32del	AAA	---	4	4	AY.118	0.000251
ORF7a	32	K32del	AAA	---	4	4	AY.121	0.000541
ORF7a	32	K32del	AAA	---	4	4	AY.20	0.000155
ORF7a	32	K32del	AAA	---	4	4	AY.26	0.000113
ORF7a	32	K32K	aaA	aaG	4	4	AY.26	0.000113
ORF7a	32	K32K	aaA	aaG	4	4	AY.3	0.00004
ORF7a	32	K32N	aaA	aaC	4	4	AY.33	0.000267
ORF7a	32	K32N	aaA	aaC	4	4	AY.39.2	0.006163
ORF7a	32	K32R	aAa	aGa	4	4	AY.4	0.000006
ORF7a	32	K32E	Aaa	Gaa	4	4	AY.43	0.000018
ORF7a	32	K32N	aaA	aaC	4	4	AY.45	0.000487
ORF7a	32	K32del	AAA	---	4	4	AY.47	0.000124
ORF7a	32	K32del	AAA	---	4	4	AY.98.1	0.000194
ORF7a	32	K32K	aaA	aaG	4	4	B	0.000511
ORF7a	32	K32Q	Aaa	Caa	4	4	B.1.1.7	0.000004
ORF7a	32	K32I	aAa	aTa	4	4	B.1.1.7	0.000004
ORF7a	32	K32R	aAa	aGa	4	4	B.1.2	0.000035
ORF7a	32	K32del	AAA	---	4	4	B.1.526	0.000094
ORF7a	32	K32E	Aaa	Gaa	4	4	B.1.621	0.000354
ORF7a	32	K32del	AAA	---	4	4	B.1.637	0.000292
ORF7a	32	K32K	aaA	aaG	4	4	P.1	0.000063
ORF7a	32	K32del	AAA	---	3	3	AY.100	0.000138
ORF7a	32	K32E	Aaa	Gaa	3	3	AY.103	0.000019
ORF7a	32	K32R	aAa	aGa	3	3	AY.120	0.000112
ORF7a	32	K32del	AAA	---	3	3	AY.33	0.0002
ORF7a	32	K32E	Aaa	Gaa	3	3	AY.4	0.000005
ORF7a	32	K32K	aaA	aaG	3	3	AY.42	0.000121
ORF7a	32	K32R	aAa	aGa	3	3	AY.43	0.000013
ORF7a	32	K32K	aaA	aaG	3	3	AY.44	0.000018
ORF7a	32	K32N	aaA	aaT	2	3	AY.44	0.000012
ORF7a	32	K32N	aaA	aaC	1	3	AY.44	0.000006
ORF7a	32	K32R	aAa	aGa	3	3	AY.46	0.000312
ORF7a	32	K32K	aaA	aaG	3	3	AY.47	0.000093
ORF7a	32	K32R	aAa	aGa	3	3	B.1	0.000027
ORF7a	32	K32N	aaA	aaC	2	3	B.1	0.000018
ORF7a	32	K32N	aaA	aaT	1	3	B.1	0.000009
ORF7a	32	K32del	AAA	---	3	3	B.1.1.25	0.001706
ORF7a	32	K32K	aaA	aaG	3	3	B.1.160.18	0.021898
ORF7a	32	K32E	Aaa	Gaa	3	3	B.1.2	0.000026
ORF7a	32	K32del	AAA	---	3	3	B.1.234	0.000396
ORF7a	32	K32del	AAA	---	3	3	B.1.351	0.000089
ORF7a	32	K32N	aaA	aaT	2	3	B.1.621	0.000177
ORF7a	32	K32N	aaA	aaC	1	3	B.1.621	0.000089
ORF7a	32	K32E	Aaa	Gaa	3	3	B.1.621.1	0.001517
ORF7a	32	K32del	AAA	---	3	3	B.1.626	0.017143
ORF7a	32	K32del	AAA	---	3	3	Q.8	0.000495
ORF7a	32	K32N	aaA	aaC	2	2	A.23.1	0.001408
ORF7a	32	K32del	AAA	---	2	2	A.28	0.005291
ORF7a	32	K32del1	AAA	-NN	1	2	All	0
ORF7a	32	K32del1	Aaa	-aa	1	2	All	0
ORF7a	32	K32Q	Aaa	Caa	2	2	AY.103	0.000012
ORF7a	32	K32K	aaA	aaG	2	2	AY.117	0.000169
ORF7a	32	K32del	AAA	---	2	2	AY.119	0.000071
ORF7a	32	K32I	aAA	aTC	2	2	AY.25	0.000012
ORF7a	32	K32K	aaA	aaG	2	2	AY.25	0.000012
ORF7a	32	K32N	aaA	aaT	2	2	AY.29	0.000032
ORF7a	32	K32del	AAA	---	2	2	AY.29.1	0.000441
ORF7a	32	K32E	Aaa	Gaa	2	2	AY.3	0.00002
ORF7a	32	K32R	aAa	aGa	1	2	AY.39	0.000025
ORF7a	32	K32R	AAA	CGG	1	2	AY.39	0.000025
ORF7a	32	K32X	Aaa	Taa	2	2	AY.4	0.000003
ORF7a	32	K32K	aaA	aaG	2	2	AY.61	0.00021
ORF7a	32	K32del	AAA	---	2	2	AY.75	0.000112
ORF7a	32	K32del	AAA	---	2	2	AY.9	0.000135
ORF7a	32	K32R	aAa	aGa	2	2	AY.9.2	0.000073
ORF7a	32	K32K	aaA	aaG	2	2	AY.99	0.002099
ORF7a	32	K32X	Aaa	Taa	2	2	B.1	0.000018
ORF7a	32	K32E	Aaa	Gaa	2	2	B.1	0.000018
ORF7a	32	K32del	AAA	---	2	2	B.1.1	0.000036
ORF7a	32	K32K	aaA	aaG	2	2	B.1.1	0.000036
ORF7a	32	K32K	aaA	aaG	2	2	B.1.1.1	0.000653
ORF7a	32	K32K	aaA	aaG	2	2	B.1.1.519	0.000079
ORF7a	32	K32del1	Aaa	-aa	1	2	B.1.1.7	0.000001
ORF7a	32	K32del1	AAA	-NN	1	2	B.1.1.7	0.000001
ORF7a	32	K32K	aaA	aaG	2	2	B.1.157	0.00597
ORF7a	32	K32del	AAA	---	2	2	B.1.160	0.000062
ORF7a	32	K32E	Aaa	Gaa	2	2	B.1.177	0.000026
ORF7a	32	K32K	aaA	aaG	2	2	B.1.177	0.000026
ORF7a	32	K32E	Aaa	Gaa	2	2	B.1.177.17	0.001642
ORF7a	32	K32K	aaA	aaG	2	2	B.1.177.45	0.000762
ORF7a	32	K32del	AAA	---	2	2	B.1.177.86	0.000367
ORF7a	32	K32N	aaA	aaC	2	2	B.1.234	0.000264
ORF7a	32	K32K	aaA	aaG	2	2	B.1.241	0.001623
ORF7a	32	K32del	AAA	---	2	2	B.1.258	0.000133
ORF7a	32	K32del	AAA	---	2	2	B.1.258.11	0.000793
ORF7a	32	K32del	AAA	---	2	2	B.1.36	0.000292
ORF7a	32	K32K	aaA	aaG	2	2	B.1.375	0.001639
ORF7a	32	K32N	aaA	aaC	2	2	B.1.596	0.000174
ORF7a	32	K32Q	Aaa	Caa	2	2	B.1.617.2	0.000008
ORF7a	32	K32K	aaA	aaG	2	2	C.12	0.014388
ORF7a	32	K32del	AAA	---	2	2	C.36.3	0.001134
ORF7a	32	K32K	aaA	aaG	2	2	D.2	0.00015
ORF7a	32	K32N	aaA	aaC	2	2	P.1	0.000032
ORF7a	32	K32R	aAa	aGa	2	2	P.1.15	0.000465
ORF7a	32	K32K	aaA	aaG	2	2	Q.1	0.000253
ORF7a	32	K32del	AAA	---	1	1	A	0.000387
ORF7a	32	K32N	aaA	aaT	1	1	AD.2	0.000219
ORF7a	32	K32H	AaA	CaC	1	1	All	0
ORF7a	32	K32L	AAa	TTa	1	1	All	0
ORF7a	32	K32R	aAa	aGa	1	1	AU.1	0.001266
ORF7a	32	K32K	aaA	aaG	1	1	AY.100	0.000046
ORF7a	32	K32N	aaA	aaC	1	1	AY.102	0.000027
ORF7a	32	K32R	aAa	aGa	1	1	AY.103	0.000006
ORF7a	32	K32K	aaA	aaG	1	1	AY.106	0.000335
ORF7a	32	K32E	Aaa	Gaa	1	1	AY.108	0.001103
ORF7a	32	K32del	AAA	---	1	1	AY.108	0.001103
ORF7a	32	K32del	AAA	---	1	1	AY.110	0.000113
ORF7a	32	K32R	aAa	aGa	1	1	AY.111	0.000183
ORF7a	32	K32del	AAA	---	1	1	AY.113	0.000142
ORF7a	32	K32N	aaA	aaC	1	1	AY.113	0.000142
ORF7a	32	K32N	aaA	aaT	1	1	AY.116	0.000287
ORF7a	32	K32Q	Aaa	Caa	1	1	AY.116.1	0.000311
ORF7a	32	K32N	aaA	aaT	1	1	AY.117	0.000085
ORF7a	32	K32R	aAa	aGa	1	1	AY.117	0.000085
ORF7a	32	K32N	aaA	aaT	1	1	AY.118	0.000063
ORF7a	32	K32G	AAa	GGa	1	1	AY.119	0.000035
ORF7a	32	K32E	Aaa	Gaa	1	1	AY.119	0.000035
ORF7a	32	K32N	aaA	aaT	1	1	AY.120	0.000037
ORF7a	32	K32del	AAA	---	1	1	AY.120.1	0.000321
ORF7a	32	K32R	aAa	aGa	1	1	AY.121	0.000135
ORF7a	32	K32N	aaA	aaT	1	1	AY.16	0.00038
ORF7a	32	K32R	aAa	aGa	1	1	AY.16.1	0.00047
ORF7a	32	K32del	AAA	---	1	1	AY.19	0.00114
ORF7a	32	K32E	Aaa	Gaa	1	1	AY.20	0.000039
ORF7a	32	K32N	aaA	aaT	1	1	AY.20	0.000039
ORF7a	32	K32I	aAa	aTa	1	1	AY.20	0.000039
ORF7a	32	K32N	aaA	aaT	1	1	AY.23	0.00007
ORF7a	32	K32X	Aaa	Taa	1	1	AY.23	0.00007
ORF7a	32	K32R	aAa	aGa	1	1	AY.23	0.00007
ORF7a	32	K32R	aAa	aGa	1	1	AY.25	0.000006
ORF7a	32	K32T	aAa	aCa	1	1	AY.25	0.000006
ORF7a	32	K32X	Aaa	Taa	1	1	AY.26	0.000028
ORF7a	32	K32T	aAa	aCa	1	1	AY.26	0.000028
ORF7a	32	K32K	aaA	aaG	1	1	AY.29	0.000016
ORF7a	32	K32R	aAa	aGa	1	1	AY.29.1	0.000221
ORF7a	32	K32R	aAa	aGa	1	1	AY.3	0.00001
ORF7a	32	K32N	aaA	aaC	1	1	AY.3	0.00001
ORF7a	32	K32del	AAA	---	1	1	AY.34	0.000097
ORF7a	32	K32K	aaA	aaG	1	1	AY.34.1	0.00051
ORF7a	32	K32del	AAA	---	1	1	AY.34.1	0.00051
ORF7a	32	K32E	Aaa	Gaa	1	1	AY.35	0.000233
ORF7a	32	K32E	Aaa	Gaa	1	1	AY.39	0.000025
ORF7a	32	K32R	aAa	aGa	1	1	AY.39.1	0.00004
ORF7a	32	K32del	AAA	---	1	1	AY.39.1	0.00004
ORF7a	32	K32I	aAA	aTT	1	1	AY.4	0.000002
ORF7a	32	K32K	aaA	aaG	1	1	AY.4.2	0.000022
ORF7a	32	K32del	AAA	---	1	1	AY.4.2	0.000022
ORF7a	32	K32N	aaA	aaC	1	1	AY.42	0.00004
ORF7a	32	K32del	AAA	---	1	1	AY.42	0.00004
ORF7a	32	K32Q	Aaa	Caa	1	1	AY.43	0.000004
ORF7a	32	K32I	aAa	aTa	1	1	AY.44	0.000006
ORF7a	32	K32E	Aaa	Gaa	1	1	AY.44	0.000006
ORF7a	32	K32del	AAA	---	1	1	AY.45	0.000122
ORF7a	32	K32N	aaA	aaT	1	1	AY.46	0.000104
ORF7a	32	K32del	AAA	---	1	1	AY.5	0.000021
ORF7a	32	K32del	AAA	---	1	1	AY.5.4	0.000277
ORF7a	32	K32del	AAA	---	1	1	AY.54	0.000095
ORF7a	32	K32del	AAA	---	1	1	AY.6	0.000041
ORF7a	32	K32del	AAA	---	1	1	AY.66	0.00107
ORF7a	32	K32X	Aaa	Taa	1	1	AY.68	0.000274
ORF7a	32	K32N	aaA	aaT	1	1	AY.7	0.000196
ORF7a	32	K32del	AAA	---	1	1	AY.7.1	0.000113
ORF7a	32	K32E	Aaa	Gaa	1	1	AY.74	0.000116
ORF7a	32	K32N	aaA	aaT	1	1	AY.74	0.000116
ORF7a	32	K32K	aaA	aaG	1	1	AY.75	0.000056
ORF7a	32	K32del	AAA	---	1	1	AY.76	0.004831
ORF7a	32	K32K	aaA	aaG	1	1	AY.78	0.001541
ORF7a	32	K32del	AAA	---	1	1	AY.79	0.001211
ORF7a	32	K32N	aaA	aaC	1	1	AY.85	0.000427
ORF7a	32	K32Q	Aaa	Caa	1	1	AY.9	0.000068
ORF7a	32	K32del	AAA	---	1	1	AY.9.1	0.000084
ORF7a	32	K32N	aaA	aaC	1	1	AY.9.2	0.000037
ORF7a	32	K32L	AAa	TTa	1	1	AY.9.2	0.000037
ORF7a	32	K32N	aaA	aaT	1	1	AY.98	0.000079
ORF7a	32	K32E	Aaa	Gaa	1	1	AY.98	0.000079
ORF7a	32	K32N	aaA	aaC	1	1	AY.99	0.001049
ORF7a	32	K32K	aaA	aaG	1	1	AY.99.2	0.000092
ORF7a	32	K32del	AAA	---	1	1	AY.99.2	0.000092
ORF7a	32	K32E	Aaa	Gaa	1	1	AY.99.2	0.000092
ORF7a	32	K32T	aAa	aCa	1	1	B.1.1	0.000018
ORF7a	32	K32X	Aaa	Taa	1	1	B.1.1	0.000018
ORF7a	32	K32Q	Aaa	Caa	1	1	B.1.1.153	0.001095
ORF7a	32	K32E	Aaa	Gaa	1	1	B.1.1.186	0.003436
ORF7a	32	K32del	AAA	---	1	1	B.1.1.207	0.001182
ORF7a	32	K32N	aaA	aaC	1	1	B.1.1.222	0.000204
ORF7a	32	K32E	Aaa	Gaa	1	1	B.1.1.222	0.000204
ORF7a	32	K32del	AAA	---	1	1	B.1.1.222	0.000204
ORF7a	32	K32K	aaA	aaG	1	1	B.1.1.25	0.000569
ORF7a	32	K32R	aAa	aGa	1	1	B.1.1.291	0.000742
ORF7a	32	K32N	aaA	aaC	1	1	B.1.1.317	0.000412
ORF7a	32	K32del	AAA	---	1	1	B.1.1.519	0.00004
ORF7a	32	K32N	aaA	aaT	1	1	B.1.1.519	0.00004
ORF7a	32	K32del	AAA	---	1	1	B.1.1.522	0.017241
ORF7a	32	K32H	AaA	CaC	1	1	B.1.1.7	0.000001
ORF7a	32	K32G	AAa	GGa	1	1	B.1.1.7	0.000001
ORF7a	32	K32del	AAA	---	1	1	B.1.115	0.021739
ORF7a	32	K32E	Aaa	Gaa	1	1	B.1.160	0.000031
ORF7a	32	K32K	aaA	aaG	1	1	B.1.160	0.000031
ORF7a	32	K32del	AAA	---	1	1	B.1.177	0.000013
ORF7a	32	K32R	aAa	aGa	1	1	B.1.177	0.000013
ORF7a	32	K32N	aaA	aaT	1	1	B.1.177	0.000013
ORF7a	32	K32del	AAA	---	1	1	B.1.177.69	0.001484
ORF7a	32	K32T	aAa	aCa	1	1	B.1.177.73	0.000566
ORF7a	32	K32del	AAA	---	1	1	B.1.177.80	0.001912
ORF7a	32	K32del	AAA	---	1	1	B.1.177.81	0.000189
ORF7a	32	K32X	Aaa	Taa	1	1	B.1.177.81	0.000189
ORF7a	32	K32del	AAA	---	1	1	B.1.177.83	0.001481
ORF7a	32	K32R	aAa	aGa	1	1	B.1.195	0.005025
ORF7a	32	K32Q	Aaa	Caa	1	1	B.1.2	0.000009
ORF7a	32	K32N	aaA	aaT	1	1	B.1.2	0.000009
ORF7a	32	K32I	aAa	aTa	1	1	B.1.2	0.000009
ORF7a	32	K32del	AAA	---	1	1	B.1.221	0.000071
ORF7a	32	K32R	aAa	aGa	1	1	B.1.234	0.000132
ORF7a	32	K32del	AAA	---	1	1	B.1.240	0.000216
ORF7a	32	K32K	aaA	aaG	1	1	B.1.243	0.00007
ORF7a	32	K32K	aaA	aaG	1	1	B.1.258	0.000067
ORF7a	32	K32N	aaA	aaT	1	1	B.1.258	0.000067
ORF7a	32	K32T	aAa	aCa	1	1	B.1.329	0.000608
ORF7a	32	K32N	aaA	aaC	1	1	B.1.36	0.000146
ORF7a	32	K32K	aaA	aaG	1	1	B.1.36.18	0.00042
ORF7a	32	K32del	AAA	---	1	1	B.1.427	0.00005
ORF7a	32	K32R	aAa	aGa	1	1	B.1.438.1	0.000107
ORF7a	32	K32del	AAA	---	1	1	B.1.438.1	0.000107
ORF7a	32	K32I	aAa	aTa	1	1	B.1.438.1	0.000107
ORF7a	32	K32del	AAA	---	1	1	B.1.459	0.004082
ORF7a	32	K32K	aaA	aaG	1	1	B.1.466.2	0.000391
ORF7a	32	K32del	AAA	---	1	1	B.1.466.2	0.000391
ORF7a	32	K32del	AAA	---	1	1	B.1.468	0.005714
ORF7a	32	K32del	AAA	---	1	1	B.1.470	0.001404
ORF7a	32	K32I	aAa	aTa	1	1	B.1.515	0.014493
ORF7a	32	K32X	Aaa	Taa	1	1	B.1.526	0.000024
ORF7a	32	K32R	aAa	aGa	1	1	B.1.558	0.004566
ORF7a	32	K32del	AAA	---	1	1	B.1.596	0.000087
ORF7a	32	K32R	aAa	aGa	1	1	B.1.617.1	0.000129
ORF7a	32	K32I	aAa	aTa	1	1	B.1.617.2	0.000004
ORF7a	32	K32X	Aaa	Taa	1	1	B.1.617.2	0.000004
ORF7a	32	K32del	AAA	---	1	1	B.1.617.3	0.002985
ORF7a	32	K32del	AAA	---	1	1	B.1.620	0.000946
ORF7a	32	K32R	aAa	aGa	1	1	B.1.628	0.000352
ORF7a	32	K32del	AAA	---	1	1	B.1.630	0.005236
ORF7a	32	K32del	AAA	---	1	1	B.1.636	0.006711
ORF7a	32	K32K	aaA	aaG	1	1	B.1.93	0.000934
ORF7a	32	K32K	aaA	aaG	1	1	B.6.6	0.000889
ORF7a	32	K32E	Aaa	Gaa	1	1	C.37	0.000116
ORF7a	32	K32X	Aaa	Taa	1	1	D.2	0.000075
ORF7a	32	K32R	aAa	aGa	1	1	P.1	0.000016
ORF7a	32	K32K	aaA	aaG	1	1	P.1.14	0.000048
ORF7a	32	K32K	aaA	aaG	1	1	P.1.16	0.000374
ORF7a	32	K32del	AAA	---	1	1	Q.2	0.000613
ORF7a	32	K32del	AAA	---	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.