CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 32

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a32K32KsynaaAaaG18321832127487-27489
ORF7a32K32NnonsynaaAaaC124610050.80658127487-27489
ORF7a32K32NnonsynaaAaaT12462410.19341927487-27489
ORF7a32K32deldelAAA---11111111127487-27489
ORF7a32K32RnonsynaAaaGa2932920.99658727487-27489
ORF7a32K32RnonsynAAACGG29310.0034129727487-27489
ORF7a32K32EnonsynAaaGaa2662550.95864727487-27489
ORF7a32K32EnonsynAaAGaG266110.041353427487-27489
ORF7a32K32QnonsynAaaCaa8383127487-27489
ORF7a32K32InonsynaAaaTa28250.89285727487-27489
ORF7a32K32InonsynaAAaTC2820.071428627487-27489
ORF7a32K32InonsynaAAaTT2810.035714327487-27489
ORF7a32K32TnonsynaAaaCa1919127487-27489
ORF7a32K32XnonsynAaaTaa1212127487-27489
ORF7a32K32GnonsynAAaGGa1010127487-27489
ORF7a32K32del1delAaa-aa210.527487-27489
ORF7a32K32del1delAAA-NN210.527487-27489
ORF7a32K32LnonsynAAaTTa11127487-27489
ORF7a32K32HnonsynAaACaC11127487-27489

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a32K32KaaAaaG18321832All0.00035
ORF7a32K32NaaAaaC10051246All0.000192
ORF7a32K32NaaAaaT2411246All0.000046
ORF7a32K32delAAA---11111111All0.000212
ORF7a32K32KaaAaaG11061106AY.40.001721
ORF7a32K32NaaAaaC893899AY.40.00139
ORF7a32K32NaaAaaT6899AY.40.000009
ORF7a32K32KaaAaaG360360A.280.952381
ORF7a32K32RaAaaGa292293All0.000056
ORF7a32K32RAAACGG1293All0
ORF7a32K32delAAA---271271AY.40.000422
ORF7a32K32delAAA---268268B.1.1.70.00024
ORF7a32K32EAaaGaa255266All0.000049
ORF7a32K32EAaAGaG11266All0.000002
ORF7a32K32delAAA---179179B.1.177.210.013688
ORF7a32K32EAaaGaa124124AY.250.000746
ORF7a32K32NaaAaaT8699B.1.617.20.000324
ORF7a32K32NaaAaaC1399B.1.617.20.000049
ORF7a32K32RaAaaGa9595B.1.1.70.000085
ORF7a32K32QAaaCaa8383All0.000016
ORF7a32K32RaAaaGa8080AY.1020.002121
ORF7a32K32KaaAaaG7575AY.430.000332
ORF7a32K32KaaAaaG7272AY.1030.000447
ORF7a32K32QAaaCaa6464AY.440.00039
ORF7a32K32NaaAaaT5353B.1.177.580.070573
ORF7a32K32KaaAaaG5151B.1.617.20.000192
ORF7a32K32EAaaGaa5050B.1.1.70.000045
ORF7a32K32NaaAaaC3838AY.430.000168
ORF7a32K32delAAA---3636AY.290.000568
ORF7a32K32delAAA---3434AY.250.000205
ORF7a32K32delAAA---3232AY.30.000318
ORF7a32K32KaaAaaG3232B.1.1.70.000029
ORF7a32K32IaAaaTa2528All0.000005
ORF7a32K32IaAAaTC228All0
ORF7a32K32IaAAaTT128All0
ORF7a32K32delAAA---2424AY.1030.000149
ORF7a32K32delAAA---2424AY.440.000146
ORF7a32K32NaaAaaT2424B.1.177.160.015947
ORF7a32K32NaaAaaT2323AY.1210.003112
ORF7a32K32RaAaaGa2121B.1.617.20.000079
ORF7a32K32TaAaaCa1919All0.000004
ORF7a32K32RaAaaGa1717B.1.5800.069106
ORF7a32K32delAAA---1616AY.7.20.008949
ORF7a32K32EAaaGaa1616P.10.000252
ORF7a32K32delAAA---1515AY.430.000066
ORF7a32K32IaAaaTa1515B.230.04386
ORF7a32K32EAaaGaa1414B.1.1.2140.000776
ORF7a32K32delAAA---1414B.1.1.2140.000776
ORF7a32K32NaaAaaT1214B.1.1.2910.008909
ORF7a32K32NaaAaaC214B.1.1.2910.001485
ORF7a32K32KaaAaaG1313B.10.000119
ORF7a32K32KaaAaaG1313B.1.30.034031
ORF7a32K32XAaaTaa1212All0.000002
ORF7a32K32delAAA---1111B.1.617.20.000041
ORF7a32K32EAaAGaG1111D.20.000825
ORF7a32K32GAAaGGa1010All0.000002
ORF7a32K32RaAaaGa1010AY.440.000061
ORF7a32K32EAaaGaa1010B.1.617.20.000038
ORF7a32K32delAAA---99B.10.000082
ORF7a32K32delAAA---99B.1.1.2840.000967
ORF7a32K32delAAA---99C.370.001045
ORF7a32K32delAAA---99P.10.000142
ORF7a32K32KaaAaaG88AY.1070.003728
ORF7a32K32GAAaGGa88AY.30.00008
ORF7a32K32delAAA---88AY.390.000198
ORF7a32K32TaAaaCa88B.1.1.70.000007
ORF7a32K32NaaAaaC78B.1.1.70.000006
ORF7a32K32NaaAaaT18B.1.1.70.000001
ORF7a32K32delAAA---88B.1.20.00007
ORF7a32K32NaaAaaT77AY.3.10.000597
ORF7a32K32KaaAaaG77AY.390.000173
ORF7a32K32NaaAaaC67AY.390.000148
ORF7a32K32NaaAaaT17AY.390.000025
ORF7a32K32NaaAaaC77AY.50.000145
ORF7a32K32KaaAaaG77B.1.1.630.002701
ORF7a32K32RaAaaGa77B.1.2430.000487
ORF7a32K32KaaAaaG66A0.002322
ORF7a32K32NaaAaaC56AY.250.00003
ORF7a32K32NaaAaaT16AY.250.000006
ORF7a32K32TaAaaCa66AY.40.000009
ORF7a32K32RaAaaGa66AY.46.40.000987
ORF7a32K32RaAaaGa66AY.790.007264
ORF7a32K32delAAA---66B.1.177.440.003114
ORF7a32K32KaaAaaG66B.1.20.000053
ORF7a32K32QAaaCaa66B.1.3510.000178
ORF7a32K32RaAaaGa55AY.3.10.000426
ORF7a32K32delAAA---55B.1.4290.000118
ORF7a32K32NaaAaaT44AY.1030.000025
ORF7a32K32delAAA---44AY.1180.000251
ORF7a32K32delAAA---44AY.1210.000541
ORF7a32K32delAAA---44AY.200.000155
ORF7a32K32delAAA---44AY.260.000113
ORF7a32K32KaaAaaG44AY.260.000113
ORF7a32K32KaaAaaG44AY.30.00004
ORF7a32K32NaaAaaC44AY.330.000267
ORF7a32K32NaaAaaC44AY.39.20.006163
ORF7a32K32RaAaaGa44AY.40.000006
ORF7a32K32EAaaGaa44AY.430.000018
ORF7a32K32NaaAaaC44AY.450.000487
ORF7a32K32delAAA---44AY.470.000124
ORF7a32K32delAAA---44AY.98.10.000194
ORF7a32K32KaaAaaG44B0.000511
ORF7a32K32QAaaCaa44B.1.1.70.000004
ORF7a32K32IaAaaTa44B.1.1.70.000004
ORF7a32K32RaAaaGa44B.1.20.000035
ORF7a32K32delAAA---44B.1.5260.000094
ORF7a32K32EAaaGaa44B.1.6210.000354
ORF7a32K32delAAA---44B.1.6370.000292
ORF7a32K32KaaAaaG44P.10.000063
ORF7a32K32delAAA---33AY.1000.000138
ORF7a32K32EAaaGaa33AY.1030.000019
ORF7a32K32RaAaaGa33AY.1200.000112
ORF7a32K32delAAA---33AY.330.0002
ORF7a32K32EAaaGaa33AY.40.000005
ORF7a32K32KaaAaaG33AY.420.000121
ORF7a32K32RaAaaGa33AY.430.000013
ORF7a32K32KaaAaaG33AY.440.000018
ORF7a32K32NaaAaaT23AY.440.000012
ORF7a32K32NaaAaaC13AY.440.000006
ORF7a32K32RaAaaGa33AY.460.000312
ORF7a32K32KaaAaaG33AY.470.000093
ORF7a32K32RaAaaGa33B.10.000027
ORF7a32K32NaaAaaC23B.10.000018
ORF7a32K32NaaAaaT13B.10.000009
ORF7a32K32delAAA---33B.1.1.250.001706
ORF7a32K32KaaAaaG33B.1.160.180.021898
ORF7a32K32EAaaGaa33B.1.20.000026
ORF7a32K32delAAA---33B.1.2340.000396
ORF7a32K32delAAA---33B.1.3510.000089
ORF7a32K32NaaAaaT23B.1.6210.000177
ORF7a32K32NaaAaaC13B.1.6210.000089
ORF7a32K32EAaaGaa33B.1.621.10.001517
ORF7a32K32delAAA---33B.1.6260.017143
ORF7a32K32delAAA---33Q.80.000495
ORF7a32K32NaaAaaC22A.23.10.001408
ORF7a32K32delAAA---22A.280.005291
ORF7a32K32del1AAA-NN12All0
ORF7a32K32del1Aaa-aa12All0
ORF7a32K32QAaaCaa22AY.1030.000012
ORF7a32K32KaaAaaG22AY.1170.000169
ORF7a32K32delAAA---22AY.1190.000071
ORF7a32K32IaAAaTC22AY.250.000012
ORF7a32K32KaaAaaG22AY.250.000012
ORF7a32K32NaaAaaT22AY.290.000032
ORF7a32K32delAAA---22AY.29.10.000441
ORF7a32K32EAaaGaa22AY.30.00002
ORF7a32K32RaAaaGa12AY.390.000025
ORF7a32K32RAAACGG12AY.390.000025
ORF7a32K32XAaaTaa22AY.40.000003
ORF7a32K32KaaAaaG22AY.610.00021
ORF7a32K32delAAA---22AY.750.000112
ORF7a32K32delAAA---22AY.90.000135
ORF7a32K32RaAaaGa22AY.9.20.000073
ORF7a32K32KaaAaaG22AY.990.002099
ORF7a32K32XAaaTaa22B.10.000018
ORF7a32K32EAaaGaa22B.10.000018
ORF7a32K32delAAA---22B.1.10.000036
ORF7a32K32KaaAaaG22B.1.10.000036
ORF7a32K32KaaAaaG22B.1.1.10.000653
ORF7a32K32KaaAaaG22B.1.1.5190.000079
ORF7a32K32del1Aaa-aa12B.1.1.70.000001
ORF7a32K32del1AAA-NN12B.1.1.70.000001
ORF7a32K32KaaAaaG22B.1.1570.00597
ORF7a32K32delAAA---22B.1.1600.000062
ORF7a32K32EAaaGaa22B.1.1770.000026
ORF7a32K32KaaAaaG22B.1.1770.000026
ORF7a32K32EAaaGaa22B.1.177.170.001642
ORF7a32K32KaaAaaG22B.1.177.450.000762
ORF7a32K32delAAA---22B.1.177.860.000367
ORF7a32K32NaaAaaC22B.1.2340.000264
ORF7a32K32KaaAaaG22B.1.2410.001623
ORF7a32K32delAAA---22B.1.2580.000133
ORF7a32K32delAAA---22B.1.258.110.000793
ORF7a32K32delAAA---22B.1.360.000292
ORF7a32K32KaaAaaG22B.1.3750.001639
ORF7a32K32NaaAaaC22B.1.5960.000174
ORF7a32K32QAaaCaa22B.1.617.20.000008
ORF7a32K32KaaAaaG22C.120.014388
ORF7a32K32delAAA---22C.36.30.001134
ORF7a32K32KaaAaaG22D.20.00015
ORF7a32K32NaaAaaC22P.10.000032
ORF7a32K32RaAaaGa22P.1.150.000465
ORF7a32K32KaaAaaG22Q.10.000253
ORF7a32K32delAAA---11A0.000387
ORF7a32K32NaaAaaT11AD.20.000219
ORF7a32K32HAaACaC11All0
ORF7a32K32LAAaTTa11All0
ORF7a32K32RaAaaGa11AU.10.001266
ORF7a32K32KaaAaaG11AY.1000.000046
ORF7a32K32NaaAaaC11AY.1020.000027
ORF7a32K32RaAaaGa11AY.1030.000006
ORF7a32K32KaaAaaG11AY.1060.000335
ORF7a32K32EAaaGaa11AY.1080.001103
ORF7a32K32delAAA---11AY.1080.001103
ORF7a32K32delAAA---11AY.1100.000113
ORF7a32K32RaAaaGa11AY.1110.000183
ORF7a32K32delAAA---11AY.1130.000142
ORF7a32K32NaaAaaC11AY.1130.000142
ORF7a32K32NaaAaaT11AY.1160.000287
ORF7a32K32QAaaCaa11AY.116.10.000311
ORF7a32K32NaaAaaT11AY.1170.000085
ORF7a32K32RaAaaGa11AY.1170.000085
ORF7a32K32NaaAaaT11AY.1180.000063
ORF7a32K32GAAaGGa11AY.1190.000035
ORF7a32K32EAaaGaa11AY.1190.000035
ORF7a32K32NaaAaaT11AY.1200.000037
ORF7a32K32delAAA---11AY.120.10.000321
ORF7a32K32RaAaaGa11AY.1210.000135
ORF7a32K32NaaAaaT11AY.160.00038
ORF7a32K32RaAaaGa11AY.16.10.00047
ORF7a32K32delAAA---11AY.190.00114
ORF7a32K32EAaaGaa11AY.200.000039
ORF7a32K32NaaAaaT11AY.200.000039
ORF7a32K32IaAaaTa11AY.200.000039
ORF7a32K32NaaAaaT11AY.230.00007
ORF7a32K32XAaaTaa11AY.230.00007
ORF7a32K32RaAaaGa11AY.230.00007
ORF7a32K32RaAaaGa11AY.250.000006
ORF7a32K32TaAaaCa11AY.250.000006
ORF7a32K32XAaaTaa11AY.260.000028
ORF7a32K32TaAaaCa11AY.260.000028
ORF7a32K32KaaAaaG11AY.290.000016
ORF7a32K32RaAaaGa11AY.29.10.000221
ORF7a32K32RaAaaGa11AY.30.00001
ORF7a32K32NaaAaaC11AY.30.00001
ORF7a32K32delAAA---11AY.340.000097
ORF7a32K32KaaAaaG11AY.34.10.00051
ORF7a32K32delAAA---11AY.34.10.00051
ORF7a32K32EAaaGaa11AY.350.000233
ORF7a32K32EAaaGaa11AY.390.000025
ORF7a32K32RaAaaGa11AY.39.10.00004
ORF7a32K32delAAA---11AY.39.10.00004
ORF7a32K32IaAAaTT11AY.40.000002
ORF7a32K32KaaAaaG11AY.4.20.000022
ORF7a32K32delAAA---11AY.4.20.000022
ORF7a32K32NaaAaaC11AY.420.00004
ORF7a32K32delAAA---11AY.420.00004
ORF7a32K32QAaaCaa11AY.430.000004
ORF7a32K32IaAaaTa11AY.440.000006
ORF7a32K32EAaaGaa11AY.440.000006
ORF7a32K32delAAA---11AY.450.000122
ORF7a32K32NaaAaaT11AY.460.000104
ORF7a32K32delAAA---11AY.50.000021
ORF7a32K32delAAA---11AY.5.40.000277
ORF7a32K32delAAA---11AY.540.000095
ORF7a32K32delAAA---11AY.60.000041
ORF7a32K32delAAA---11AY.660.00107
ORF7a32K32XAaaTaa11AY.680.000274
ORF7a32K32NaaAaaT11AY.70.000196
ORF7a32K32delAAA---11AY.7.10.000113
ORF7a32K32EAaaGaa11AY.740.000116
ORF7a32K32NaaAaaT11AY.740.000116
ORF7a32K32KaaAaaG11AY.750.000056
ORF7a32K32delAAA---11AY.760.004831
ORF7a32K32KaaAaaG11AY.780.001541
ORF7a32K32delAAA---11AY.790.001211
ORF7a32K32NaaAaaC11AY.850.000427
ORF7a32K32QAaaCaa11AY.90.000068
ORF7a32K32delAAA---11AY.9.10.000084
ORF7a32K32NaaAaaC11AY.9.20.000037
ORF7a32K32LAAaTTa11AY.9.20.000037
ORF7a32K32NaaAaaT11AY.980.000079
ORF7a32K32EAaaGaa11AY.980.000079
ORF7a32K32NaaAaaC11AY.990.001049
ORF7a32K32KaaAaaG11AY.99.20.000092
ORF7a32K32delAAA---11AY.99.20.000092
ORF7a32K32EAaaGaa11AY.99.20.000092
ORF7a32K32TaAaaCa11B.1.10.000018
ORF7a32K32XAaaTaa11B.1.10.000018
ORF7a32K32QAaaCaa11B.1.1.1530.001095
ORF7a32K32EAaaGaa11B.1.1.1860.003436
ORF7a32K32delAAA---11B.1.1.2070.001182
ORF7a32K32NaaAaaC11B.1.1.2220.000204
ORF7a32K32EAaaGaa11B.1.1.2220.000204
ORF7a32K32delAAA---11B.1.1.2220.000204
ORF7a32K32KaaAaaG11B.1.1.250.000569
ORF7a32K32RaAaaGa11B.1.1.2910.000742
ORF7a32K32NaaAaaC11B.1.1.3170.000412
ORF7a32K32delAAA---11B.1.1.5190.00004
ORF7a32K32NaaAaaT11B.1.1.5190.00004
ORF7a32K32delAAA---11B.1.1.5220.017241
ORF7a32K32HAaACaC11B.1.1.70.000001
ORF7a32K32GAAaGGa11B.1.1.70.000001
ORF7a32K32delAAA---11B.1.1150.021739
ORF7a32K32EAaaGaa11B.1.1600.000031
ORF7a32K32KaaAaaG11B.1.1600.000031
ORF7a32K32delAAA---11B.1.1770.000013
ORF7a32K32RaAaaGa11B.1.1770.000013
ORF7a32K32NaaAaaT11B.1.1770.000013
ORF7a32K32delAAA---11B.1.177.690.001484
ORF7a32K32TaAaaCa11B.1.177.730.000566
ORF7a32K32delAAA---11B.1.177.800.001912
ORF7a32K32delAAA---11B.1.177.810.000189
ORF7a32K32XAaaTaa11B.1.177.810.000189
ORF7a32K32delAAA---11B.1.177.830.001481
ORF7a32K32RaAaaGa11B.1.1950.005025
ORF7a32K32QAaaCaa11B.1.20.000009
ORF7a32K32NaaAaaT11B.1.20.000009
ORF7a32K32IaAaaTa11B.1.20.000009
ORF7a32K32delAAA---11B.1.2210.000071
ORF7a32K32RaAaaGa11B.1.2340.000132
ORF7a32K32delAAA---11B.1.2400.000216
ORF7a32K32KaaAaaG11B.1.2430.00007
ORF7a32K32KaaAaaG11B.1.2580.000067
ORF7a32K32NaaAaaT11B.1.2580.000067
ORF7a32K32TaAaaCa11B.1.3290.000608
ORF7a32K32NaaAaaC11B.1.360.000146
ORF7a32K32KaaAaaG11B.1.36.180.00042
ORF7a32K32delAAA---11B.1.4270.00005
ORF7a32K32RaAaaGa11B.1.438.10.000107
ORF7a32K32delAAA---11B.1.438.10.000107
ORF7a32K32IaAaaTa11B.1.438.10.000107
ORF7a32K32delAAA---11B.1.4590.004082
ORF7a32K32KaaAaaG11B.1.466.20.000391
ORF7a32K32delAAA---11B.1.466.20.000391
ORF7a32K32delAAA---11B.1.4680.005714
ORF7a32K32delAAA---11B.1.4700.001404
ORF7a32K32IaAaaTa11B.1.5150.014493
ORF7a32K32XAaaTaa11B.1.5260.000024
ORF7a32K32RaAaaGa11B.1.5580.004566
ORF7a32K32delAAA---11B.1.5960.000087
ORF7a32K32RaAaaGa11B.1.617.10.000129
ORF7a32K32IaAaaTa11B.1.617.20.000004
ORF7a32K32XAaaTaa11B.1.617.20.000004
ORF7a32K32delAAA---11B.1.617.30.002985
ORF7a32K32delAAA---11B.1.6200.000946
ORF7a32K32RaAaaGa11B.1.6280.000352
ORF7a32K32delAAA---11B.1.6300.005236
ORF7a32K32delAAA---11B.1.6360.006711
ORF7a32K32KaaAaaG11B.1.930.000934
ORF7a32K32KaaAaaG11B.6.60.000889
ORF7a32K32EAaaGaa11C.370.000116
ORF7a32K32XAaaTaa11D.20.000075
ORF7a32K32RaAaaGa11P.10.000016
ORF7a32K32KaaAaaG11P.1.140.000048
ORF7a32K32KaaAaaG11P.1.160.000374
ORF7a32K32delAAA---11Q.20.000613
ORF7a32K32delAAA---11R.10.00009