CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 3 | I3I | syn | atT | atC | 967 | 948 | 0.980352 | 27400-27402 | |
ORF7a | 3 | I3I | syn | atT | atA | 967 | 19 | 0.0196484 | 27400-27402 | |
ORF7a | 3 | I3T | nonsyn | aTt | aCt | 921 | 919 | 0.997828 | 27400-27402 | |
ORF7a | 3 | I3T | nonsyn | aTT | aCG | 921 | 2 | 0.00217155 | 27400-27402 | |
ORF7a | 3 | I3del | del | ATT | --- | 533 | 533 | 1 | 27400-27402 | |
ORF7a | 3 | I3V | nonsyn | Att | Gtt | 526 | 526 | 1 | 27400-27402 | |
ORF7a | 3 | I3M | nonsyn | atT | atG | 223 | 223 | 1 | 27400-27402 | |
ORF7a | 3 | I3F | nonsyn | Att | Ttt | 219 | 217 | 0.990868 | 27400-27402 | |
ORF7a | 3 | I3F | nonsyn | AtT | TtC | 219 | 2 | 0.00913242 | 27400-27402 | |
ORF7a | 3 | I3S | nonsyn | aTt | aGt | 105 | 105 | 1 | 27400-27402 | |
ORF7a | 3 | I3del2 | del | aTT | a-- | 35 | 33 | 0.942857 | 27400-27402 | |
ORF7a | 3 | I3del2 | del | ATt | --t | 35 | 2 | 0.0571429 | 27400-27402 | |
ORF7a | 3 | I3del1 | del | atT | at- | 23 | 20 | 0.869565 | 27400-27402 | |
ORF7a | 3 | I3del1 | del | ATT | -CN | 23 | 1 | 0.0434783 | 27400-27402 | |
ORF7a | 3 | I3del1 | del | Att | -tt | 23 | 1 | 0.0434783 | 27400-27402 | |
ORF7a | 3 | I3del1 | del | aTt | a-t | 23 | 1 | 0.0434783 | 27400-27402 | |
ORF7a | 3 | I3L | nonsyn | Att | Ctt | 20 | 12 | 0.6 | 27400-27402 | |
ORF7a | 3 | I3L | nonsyn | AtT | CtA | 20 | 3 | 0.15 | 27400-27402 | |
ORF7a | 3 | I3L | nonsyn | AtT | CtG | 20 | 3 | 0.15 | 27400-27402 | |
ORF7a | 3 | I3L | nonsyn | AtT | TtA | 20 | 2 | 0.1 | 27400-27402 | |
ORF7a | 3 | I3N | nonsyn | aTt | aAt | 11 | 11 | 1 | 27400-27402 | |
ORF7a | 3 | I3K | nonsyn | aTT | aAA | 5 | 3 | 0.6 | 27400-27402 | |
ORF7a | 3 | I3K | nonsyn | aTT | aAG | 5 | 2 | 0.4 | 27400-27402 | |
ORF7a | 3 | I3Y | nonsyn | ATT | TAC | 2 | 2 | 1 | 27400-27402 | |
ORF7a | 3 | I3C | nonsyn | ATT | TGC | 2 | 2 | 1 | 27400-27402 | |
ORF7a | 3 | I3A | nonsyn | ATT | GCA | 1 | 1 | 1 | 27400-27402 | |
ORF7a | 3 | I3P | nonsyn | ATt | CCt | 1 | 1 | 1 | 27400-27402 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 3 | I3I | atT | atC | 948 | 967 | All | 0.000181 |
ORF7a | 3 | I3I | atT | atA | 19 | 967 | All | 0.000004 |
ORF7a | 3 | I3T | aTt | aCt | 919 | 921 | All | 0.000176 |
ORF7a | 3 | I3T | aTT | aCG | 2 | 921 | All | 0 |
ORF7a | 3 | I3del | ATT | --- | 533 | 533 | All | 0.000102 |
ORF7a | 3 | I3V | Att | Gtt | 526 | 526 | All | 0.000101 |
ORF7a | 3 | I3I | atT | atC | 318 | 326 | B.1.1.7 | 0.000285 |
ORF7a | 3 | I3I | atT | atA | 8 | 326 | B.1.1.7 | 0.000007 |
ORF7a | 3 | I3T | aTt | aCt | 266 | 266 | C.37 | 0.030873 |
ORF7a | 3 | I3T | aTt | aCt | 252 | 252 | B.1.1.7 | 0.000226 |
ORF7a | 3 | I3M | atT | atG | 223 | 223 | All | 0.000043 |
ORF7a | 3 | I3F | Att | Ttt | 217 | 219 | All | 0.000042 |
ORF7a | 3 | I3F | AtT | TtC | 2 | 219 | All | 0 |
ORF7a | 3 | I3M | atT | atG | 213 | 213 | B.1.1.7 | 0.000191 |
ORF7a | 3 | I3V | Att | Gtt | 198 | 198 | B.1.1.7 | 0.000177 |
ORF7a | 3 | I3del | ATT | --- | 139 | 139 | B.1.1.7 | 0.000124 |
ORF7a | 3 | I3I | atT | atC | 128 | 128 | B.1.617.2 | 0.000482 |
ORF7a | 3 | I3S | aTt | aGt | 105 | 105 | All | 0.00002 |
ORF7a | 3 | I3I | atT | atC | 101 | 101 | B.1.177.21 | 0.007723 |
ORF7a | 3 | I3del | ATT | --- | 94 | 94 | AY.4 | 0.000146 |
ORF7a | 3 | I3F | Att | Ttt | 67 | 67 | B.1.1.7 | 0.00006 |
ORF7a | 3 | I3T | aTt | aCt | 62 | 62 | C.35 | 0.047988 |
ORF7a | 3 | I3I | atT | atC | 57 | 57 | AY.33 | 0.003806 |
ORF7a | 3 | I3I | atT | atC | 52 | 54 | AY.4 | 0.000081 |
ORF7a | 3 | I3I | atT | atA | 2 | 54 | AY.4 | 0.000003 |
ORF7a | 3 | I3I | atT | atC | 48 | 48 | B.1.1.214 | 0.002662 |
ORF7a | 3 | I3T | aTt | aCt | 43 | 43 | B.1.2 | 0.000379 |
ORF7a | 3 | I3V | Att | Gtt | 40 | 40 | C.37 | 0.004643 |
ORF7a | 3 | I3S | aTt | aGt | 39 | 39 | B.1.617.2 | 0.000147 |
ORF7a | 3 | I3del2 | aTT | a-- | 33 | 35 | All | 0.000006 |
ORF7a | 3 | I3del2 | ATt | --t | 2 | 35 | All | 0 |
ORF7a | 3 | I3V | Att | Gtt | 34 | 34 | B.1.617.2 | 0.000128 |
ORF7a | 3 | I3T | aTt | aCt | 32 | 32 | AY.39 | 0.000791 |
ORF7a | 3 | I3T | aTt | aCt | 28 | 28 | B.1.258.23 | 0.666667 |
ORF7a | 3 | I3del | ATT | --- | 25 | 25 | AY.120 | 0.000929 |
ORF7a | 3 | I3V | Att | Gtt | 25 | 25 | AY.25 | 0.00015 |
ORF7a | 3 | I3V | Att | Gtt | 25 | 25 | AY.4 | 0.000039 |
ORF7a | 3 | I3V | Att | Gtt | 25 | 25 | AY.46.5 | 0.00496 |
ORF7a | 3 | I3I | atT | atC | 24 | 24 | AY.103 | 0.000149 |
ORF7a | 3 | I3F | Att | Ttt | 24 | 24 | AY.99.2 | 0.002212 |
ORF7a | 3 | I3del1 | atT | at- | 20 | 23 | All | 0.000004 |
ORF7a | 3 | I3del1 | Att | -tt | 1 | 23 | All | 0 |
ORF7a | 3 | I3del1 | aTt | a-t | 1 | 23 | All | 0 |
ORF7a | 3 | I3del1 | ATT | -CN | 1 | 23 | All | 0 |
ORF7a | 3 | I3T | aTt | aCt | 23 | 23 | AY.25 | 0.000138 |
ORF7a | 3 | I3V | Att | Gtt | 23 | 23 | B.1.351 | 0.000684 |
ORF7a | 3 | I3I | atT | atC | 22 | 22 | AY.20 | 0.000855 |
ORF7a | 3 | I3T | aTt | aCt | 22 | 22 | B.1.617.2 | 0.000083 |
ORF7a | 3 | I3T | aTt | aCt | 21 | 21 | B.1.351 | 0.000624 |
ORF7a | 3 | I3L | Att | Ctt | 12 | 20 | All | 0.000002 |
ORF7a | 3 | I3L | AtT | CtA | 3 | 20 | All | 0.000001 |
ORF7a | 3 | I3L | AtT | CtG | 3 | 20 | All | 0.000001 |
ORF7a | 3 | I3L | AtT | TtA | 2 | 20 | All | 0 |
ORF7a | 3 | I3del | ATT | --- | 20 | 20 | AY.29 | 0.000315 |
ORF7a | 3 | I3F | Att | Ttt | 20 | 20 | B.1.617.2 | 0.000075 |
ORF7a | 3 | I3F | Att | Ttt | 19 | 19 | AY.43 | 0.000084 |
ORF7a | 3 | I3I | atT | atC | 17 | 19 | AY.43 | 0.000075 |
ORF7a | 3 | I3I | atT | atA | 2 | 19 | AY.43 | 0.000009 |
ORF7a | 3 | I3del2 | aTT | a-- | 18 | 18 | AY.4 | 0.000028 |
ORF7a | 3 | I3T | aTt | aCt | 18 | 18 | AY.4.5 | 0.001935 |
ORF7a | 3 | I3V | Att | Gtt | 18 | 18 | B.1.1.12 | 0.134328 |
ORF7a | 3 | I3del | ATT | --- | 17 | 17 | AY.3 | 0.000169 |
ORF7a | 3 | I3T | aTt | aCt | 17 | 17 | AY.4 | 0.000026 |
ORF7a | 3 | I3T | aTt | aCt | 17 | 17 | B.1.160 | 0.00053 |
ORF7a | 3 | I3T | aTt | aCt | 17 | 17 | Q.8 | 0.002803 |
ORF7a | 3 | I3S | aTt | aGt | 16 | 16 | AY.102 | 0.000424 |
ORF7a | 3 | I3I | atT | atC | 16 | 16 | B.1.351 | 0.000476 |
ORF7a | 3 | I3I | atT | atC | 16 | 16 | B.1.564.1 | 0.025237 |
ORF7a | 3 | I3del | ATT | --- | 15 | 15 | AY.109 | 0.011095 |
ORF7a | 3 | I3V | Att | Gtt | 14 | 14 | AY.103 | 0.000087 |
ORF7a | 3 | I3del | ATT | --- | 14 | 14 | AY.25 | 0.000084 |
ORF7a | 3 | I3I | atT | atC | 14 | 14 | AY.39 | 0.000346 |
ORF7a | 3 | I3F | Att | Ttt | 13 | 13 | AY.5.4 | 0.003597 |
ORF7a | 3 | I3del | ATT | --- | 13 | 13 | B.1.617.2 | 0.000049 |
ORF7a | 3 | I3V | Att | Gtt | 13 | 13 | P.1 | 0.000205 |
ORF7a | 3 | I3del | ATT | --- | 12 | 12 | AY.103 | 0.000075 |
ORF7a | 3 | I3del2 | aTT | a-- | 11 | 12 | B.1.1.7 | 0.00001 |
ORF7a | 3 | I3del2 | ATt | --t | 1 | 12 | B.1.1.7 | 0.000001 |
ORF7a | 3 | I3N | aTt | aAt | 11 | 11 | All | 0.000002 |
ORF7a | 3 | I3I | atT | atC | 11 | 11 | AY.25 | 0.000066 |
ORF7a | 3 | I3T | aTt | aCt | 10 | 10 | AY.103 | 0.000062 |
ORF7a | 3 | I3V | Att | Gtt | 10 | 10 | AY.3 | 0.000099 |
ORF7a | 3 | I3del | ATT | --- | 10 | 10 | AY.44 | 0.000061 |
ORF7a | 3 | I3F | Att | Ttt | 9 | 9 | AY.4 | 0.000014 |
ORF7a | 3 | I3del | ATT | --- | 9 | 9 | AY.43 | 0.00004 |
ORF7a | 3 | I3I | atT | atC | 9 | 9 | AY.44 | 0.000055 |
ORF7a | 3 | I3V | Att | Gtt | 8 | 8 | AY.102 | 0.000212 |
ORF7a | 3 | I3V | Att | Gtt | 8 | 8 | AY.23 | 0.000558 |
ORF7a | 3 | I3I | atT | atC | 8 | 8 | AZ.4 | 0.026846 |
ORF7a | 3 | I3F | Att | Ttt | 8 | 8 | B.1.2 | 0.00007 |
ORF7a | 3 | I3T | aTt | aCt | 8 | 8 | B.1.258.17 | 0.000832 |
ORF7a | 3 | I3I | atT | atC | 8 | 8 | B.1.36 | 0.001167 |
ORF7a | 3 | I3del | ATT | --- | 8 | 8 | B.1.36 | 0.001167 |
ORF7a | 3 | I3F | Att | Ttt | 7 | 7 | AY.39 | 0.000173 |
ORF7a | 3 | I3V | Att | Gtt | 7 | 7 | AY.43 | 0.000031 |
ORF7a | 3 | I3del | ATT | --- | 7 | 7 | B.1.1.284 | 0.000752 |
ORF7a | 3 | I3del1 | atT | at- | 7 | 7 | B.1.1.7 | 0.000006 |
ORF7a | 3 | I3T | aTt | aCt | 7 | 7 | B.1.177 | 0.000092 |
ORF7a | 3 | I3V | Att | Gtt | 7 | 7 | B.1.2 | 0.000062 |
ORF7a | 3 | I3del | ATT | --- | 6 | 6 | AY.26 | 0.00017 |
ORF7a | 3 | I3del | ATT | --- | 6 | 6 | AY.39 | 0.000148 |
ORF7a | 3 | I3V | Att | Gtt | 6 | 6 | AY.46.2 | 0.003812 |
ORF7a | 3 | I3del | ATT | --- | 6 | 6 | AY.47 | 0.000187 |
ORF7a | 3 | I3I | atT | atC | 6 | 6 | B.1 | 0.000055 |
ORF7a | 3 | I3del | ATT | --- | 6 | 6 | B.1.1.214 | 0.000333 |
ORF7a | 3 | I3S | aTt | aGt | 6 | 6 | B.1.1.7 | 0.000005 |
ORF7a | 3 | I3I | atT | atC | 6 | 6 | B.1.2 | 0.000053 |
ORF7a | 3 | I3F | Att | Ttt | 6 | 6 | B.1.427 | 0.000303 |
ORF7a | 3 | I3del | ATT | --- | 6 | 6 | B.1.526 | 0.000141 |
ORF7a | 3 | I3T | aTt | aCt | 6 | 6 | B.1.590 | 0.027273 |
ORF7a | 3 | I3del | ATT | --- | 6 | 6 | P.1 | 0.000095 |
ORF7a | 3 | I3K | aTT | aAA | 3 | 5 | All | 0.000001 |
ORF7a | 3 | I3K | aTT | aAG | 2 | 5 | All | 0 |
ORF7a | 3 | I3I | atT | atC | 5 | 5 | AY.100 | 0.00023 |
ORF7a | 3 | I3I | atT | atC | 5 | 5 | AY.120.1 | 0.001605 |
ORF7a | 3 | I3I | atT | atC | 5 | 5 | AY.3 | 0.00005 |
ORF7a | 3 | I3V | Att | Gtt | 5 | 5 | AY.39 | 0.000124 |
ORF7a | 3 | I3del | ATT | --- | 5 | 5 | AY.98.1 | 0.000242 |
ORF7a | 3 | I3F | Att | Ttt | 5 | 5 | B.1 | 0.000046 |
ORF7a | 3 | I3V | Att | Gtt | 5 | 5 | B.1.1.348 | 0.003981 |
ORF7a | 3 | I3M | atT | atG | 5 | 5 | B.1.1.63 | 0.001929 |
ORF7a | 3 | I3S | aTt | aGt | 5 | 5 | B.1.177 | 0.000066 |
ORF7a | 3 | I3del | ATT | --- | 5 | 5 | B.1.177.44 | 0.002595 |
ORF7a | 3 | I3del | ATT | --- | 5 | 5 | C.37 | 0.00058 |
ORF7a | 3 | I3I | atT | atC | 5 | 5 | C.37 | 0.00058 |
ORF7a | 3 | I3I | atT | atC | 5 | 5 | P.2 | 0.000933 |
ORF7a | 3 | I3F | Att | Ttt | 2 | 4 | 0.111111 | |
ORF7a | 3 | I3F | AtT | TtC | 2 | 4 | 0.111111 | |
ORF7a | 3 | I3del | ATT | --- | 4 | 4 | AY.106 | 0.00134 |
ORF7a | 3 | I3del | ATT | --- | 4 | 4 | AY.118 | 0.000251 |
ORF7a | 3 | I3S | aTt | aGt | 4 | 4 | AY.21 | 0.00759 |
ORF7a | 3 | I3I | atT | atC | 4 | 4 | AY.23 | 0.000279 |
ORF7a | 3 | I3V | Att | Gtt | 4 | 4 | AY.34 | 0.000388 |
ORF7a | 3 | I3S | aTt | aGt | 4 | 4 | AY.4 | 0.000006 |
ORF7a | 3 | I3I | atT | atC | 4 | 4 | AY.46 | 0.000416 |
ORF7a | 3 | I3del | ATT | --- | 4 | 4 | B.1 | 0.000037 |
ORF7a | 3 | I3I | atT | atC | 4 | 4 | B.1.1.176 | 0.001757 |
ORF7a | 3 | I3del | ATT | --- | 4 | 4 | B.1.2 | 0.000035 |
ORF7a | 3 | I3del | ATT | --- | 4 | 4 | B.1.429 | 0.000094 |
ORF7a | 3 | I3I | atT | atC | 4 | 4 | B.1.609 | 0.001918 |
ORF7a | 3 | I3T | aTt | aCt | 4 | 4 | C.37.1 | 0.010471 |
ORF7a | 3 | I3S | aTt | aGt | 3 | 3 | AY.103 | 0.000019 |
ORF7a | 3 | I3F | Att | Ttt | 3 | 3 | AY.23 | 0.000209 |
ORF7a | 3 | I3F | Att | Ttt | 3 | 3 | AY.25 | 0.000018 |
ORF7a | 3 | I3I | atT | atC | 3 | 3 | AY.26 | 0.000085 |
ORF7a | 3 | I3V | Att | Gtt | 3 | 3 | AY.33 | 0.0002 |
ORF7a | 3 | I3S | aTt | aGt | 3 | 3 | AY.33 | 0.0002 |
ORF7a | 3 | I3T | aTt | aCt | 3 | 3 | AY.43 | 0.000013 |
ORF7a | 3 | I3S | aTt | aGt | 3 | 3 | AY.44 | 0.000018 |
ORF7a | 3 | I3I | atT | atC | 3 | 3 | AY.45 | 0.000365 |
ORF7a | 3 | I3V | Att | Gtt | 3 | 3 | AY.47 | 0.000093 |
ORF7a | 3 | I3del | ATT | --- | 3 | 3 | AY.66 | 0.003209 |
ORF7a | 3 | I3T | aTt | aCt | 3 | 3 | B.1 | 0.000027 |
ORF7a | 3 | I3T | aTt | aCt | 3 | 3 | B.1.1 | 0.000054 |
ORF7a | 3 | I3I | atT | atC | 3 | 3 | B.1.1 | 0.000054 |
ORF7a | 3 | I3L | AtT | CtG | 3 | 3 | B.1.1.7 | 0.000003 |
ORF7a | 3 | I3I | atT | atC | 3 | 3 | B.1.160 | 0.000094 |
ORF7a | 3 | I3del | ATT | --- | 3 | 3 | B.1.177.21 | 0.000229 |
ORF7a | 3 | I3del1 | atT | at- | 3 | 3 | B.1.177.21 | 0.000229 |
ORF7a | 3 | I3del | ATT | --- | 3 | 3 | B.1.234 | 0.000396 |
ORF7a | 3 | I3I | atT | atA | 3 | 3 | B.1.258.17 | 0.000312 |
ORF7a | 3 | I3V | Att | Gtt | 3 | 3 | B.1.429 | 0.000071 |
ORF7a | 3 | I3del | ATT | --- | 3 | 3 | B.1.438.1 | 0.000322 |
ORF7a | 3 | I3V | Att | Gtt | 3 | 3 | B.1.526 | 0.000071 |
ORF7a | 3 | I3T | aTt | aCt | 3 | 3 | B.1.577 | 0.002062 |
ORF7a | 3 | I3del | ATT | --- | 3 | 3 | B.1.621 | 0.000266 |
ORF7a | 3 | I3I | atT | atA | 2 | 3 | D.2 | 0.00015 |
ORF7a | 3 | I3I | atT | atC | 1 | 3 | D.2 | 0.000075 |
ORF7a | 3 | I3T | aTt | aCt | 3 | 3 | P.1 | 0.000047 |
ORF7a | 3 | I3I | atT | atC | 2 | 3 | P.1 | 0.000032 |
ORF7a | 3 | I3I | atT | atA | 1 | 3 | P.1 | 0.000016 |
ORF7a | 3 | I3V | Att | Gtt | 3 | 3 | Q.8 | 0.000495 |
ORF7a | 3 | I3del | ATT | --- | 3 | 3 | Q.8 | 0.000495 |
ORF7a | 3 | I3T | aTt | aCt | 3 | 3 | R.1 | 0.00027 |
ORF7a | 3 | I3Y | ATT | TAC | 2 | 2 | 0.111111 | |
ORF7a | 3 | I3C | ATT | TGC | 2 | 2 | 0.111111 | |
ORF7a | 3 | I3T | aTT | aCG | 2 | 2 | 0.111111 | |
ORF7a | 3 | I3K | aTT | aAG | 2 | 2 | 0.111111 | |
ORF7a | 3 | I3C | ATT | TGC | 2 | 2 | All | 0 |
ORF7a | 3 | I3Y | ATT | TAC | 2 | 2 | All | 0 |
ORF7a | 3 | I3del | ATT | --- | 2 | 2 | AY.100 | 0.000092 |
ORF7a | 3 | I3T | aTt | aCt | 2 | 2 | AY.102 | 0.000053 |
ORF7a | 3 | I3S | aTt | aGt | 2 | 2 | AY.110 | 0.000225 |
ORF7a | 3 | I3F | Att | Ttt | 2 | 2 | AY.119 | 0.000071 |
ORF7a | 3 | I3del | ATT | --- | 2 | 2 | AY.119 | 0.000071 |
ORF7a | 3 | I3T | aTt | aCt | 2 | 2 | AY.120.1 | 0.000642 |
ORF7a | 3 | I3T | aTt | aCt | 2 | 2 | AY.20 | 0.000078 |
ORF7a | 3 | I3del | ATT | --- | 2 | 2 | AY.20 | 0.000078 |
ORF7a | 3 | I3V | Att | Gtt | 2 | 2 | AY.26 | 0.000057 |
ORF7a | 3 | I3del | ATT | --- | 2 | 2 | AY.29.1 | 0.000441 |
ORF7a | 3 | I3del | ATT | --- | 2 | 2 | AY.33 | 0.000134 |
ORF7a | 3 | I3del | ATT | --- | 2 | 2 | AY.34.1 | 0.00102 |
ORF7a | 3 | I3del1 | atT | at- | 2 | 2 | AY.4 | 0.000003 |
ORF7a | 3 | I3L | AtT | CtA | 2 | 2 | AY.4 | 0.000003 |
ORF7a | 3 | I3I | atT | atC | 2 | 2 | AY.40 | 0.001929 |
ORF7a | 3 | I3del | ATT | --- | 2 | 2 | AY.42 | 0.00008 |
ORF7a | 3 | I3T | aTt | aCt | 2 | 2 | AY.42 | 0.00008 |
ORF7a | 3 | I3V | Att | Gtt | 2 | 2 | AY.44 | 0.000012 |
ORF7a | 3 | I3S | aTt | aGt | 2 | 2 | AY.45 | 0.000243 |
ORF7a | 3 | I3V | Att | Gtt | 2 | 2 | AY.46 | 0.000208 |
ORF7a | 3 | I3T | aTt | aCt | 2 | 2 | AY.48 | 0.00093 |
ORF7a | 3 | I3V | Att | Gtt | 2 | 2 | AY.61 | 0.00021 |
ORF7a | 3 | I3T | aTt | aCt | 2 | 2 | AY.75 | 0.000112 |
ORF7a | 3 | I3I | atT | atC | 2 | 2 | AY.85 | 0.000854 |
ORF7a | 3 | I3F | Att | Ttt | 2 | 2 | AY.94 | 0.000885 |
ORF7a | 3 | I3V | Att | Gtt | 2 | 2 | B.1 | 0.000018 |
ORF7a | 3 | I3del1 | atT | at- | 2 | 2 | B.1 | 0.000018 |
ORF7a | 3 | I3F | Att | Ttt | 2 | 2 | B.1.1 | 0.000036 |
ORF7a | 3 | I3del | ATT | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF7a | 3 | I3L | Att | Ctt | 2 | 2 | B.1.1 | 0.000036 |
ORF7a | 3 | I3T | aTt | aCt | 2 | 2 | B.1.1.1 | 0.000653 |
ORF7a | 3 | I3V | Att | Gtt | 2 | 2 | B.1.1.157 | 0.001826 |
ORF7a | 3 | I3I | atT | atC | 2 | 2 | B.1.1.306 | 0.000877 |
ORF7a | 3 | I3del | ATT | --- | 2 | 2 | B.1.160 | 0.000062 |
ORF7a | 3 | I3del | ATT | --- | 2 | 2 | B.1.177.86 | 0.000367 |
ORF7a | 3 | I3F | Att | Ttt | 2 | 2 | B.1.243 | 0.000139 |
ORF7a | 3 | I3T | aTt | aCt | 2 | 2 | B.1.258 | 0.000133 |
ORF7a | 3 | I3del | ATT | --- | 2 | 2 | B.1.258.11 | 0.000793 |
ORF7a | 3 | I3F | Att | Ttt | 2 | 2 | B.1.311 | 0.000549 |
ORF7a | 3 | I3T | aTt | aCt | 2 | 2 | B.1.336 | 0.004878 |
ORF7a | 3 | I3F | Att | Ttt | 2 | 2 | B.1.411 | 0.007407 |
ORF7a | 3 | I3T | aTt | aCt | 2 | 2 | B.1.429 | 0.000047 |
ORF7a | 3 | I3V | Att | Gtt | 2 | 2 | B.1.525 | 0.000226 |
ORF7a | 3 | I3N | aTt | aAt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF7a | 3 | I3del1 | aTt | a-t | 1 | 2 | B.1.617.2 | 0.000004 |
ORF7a | 3 | I3del1 | atT | at- | 1 | 2 | B.1.617.2 | 0.000004 |
ORF7a | 3 | I3S | aTt | aGt | 2 | 2 | B.1.621 | 0.000177 |
ORF7a | 3 | I3K | aTT | aAA | 2 | 2 | D.2 | 0.00015 |
ORF7a | 3 | I3N | aTt | aAt | 2 | 2 | D.2 | 0.00015 |
ORF7a | 3 | I3F | Att | Ttt | 2 | 2 | P.1 | 0.000032 |
ORF7a | 3 | I3F | Att | Ttt | 2 | 2 | P.1.17 | 0.000324 |
ORF7a | 3 | I3T | aTt | aCt | 2 | 2 | W.4 | 0.002703 |
ORF7a | 3 | I3del2 | aTT | a-- | 1 | 1 | A | 0.000387 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | A.28 | 0.002646 |
ORF7a | 3 | I3A | ATT | GCA | 1 | 1 | All | 0 |
ORF7a | 3 | I3P | ATt | CCt | 1 | 1 | All | 0 |
ORF7a | 3 | I3L | Att | Ctt | 1 | 1 | AY.101 | 0.00049 |
ORF7a | 3 | I3I | atT | atC | 1 | 1 | AY.102 | 0.000027 |
ORF7a | 3 | I3F | Att | Ttt | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 3 | I3del1 | Att | -tt | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 3 | I3S | aTt | aGt | 1 | 1 | AY.105 | 0.000643 |
ORF7a | 3 | I3V | Att | Gtt | 1 | 1 | AY.106 | 0.000335 |
ORF7a | 3 | I3S | aTt | aGt | 1 | 1 | AY.108 | 0.001103 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF7a | 3 | I3V | Att | Gtt | 1 | 1 | AY.113 | 0.000142 |
ORF7a | 3 | I3F | Att | Ttt | 1 | 1 | AY.113 | 0.000142 |
ORF7a | 3 | I3T | aTt | aCt | 1 | 1 | AY.114 | 0.000231 |
ORF7a | 3 | I3del1 | ATT | -CN | 1 | 1 | AY.114 | 0.000231 |
ORF7a | 3 | I3V | Att | Gtt | 1 | 1 | AY.116 | 0.000287 |
ORF7a | 3 | I3T | aTt | aCt | 1 | 1 | AY.117 | 0.000085 |
ORF7a | 3 | I3S | aTt | aGt | 1 | 1 | AY.117 | 0.000085 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | AY.117 | 0.000085 |
ORF7a | 3 | I3S | aTt | aGt | 1 | 1 | AY.120 | 0.000037 |
ORF7a | 3 | I3I | atT | atC | 1 | 1 | AY.120 | 0.000037 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | AY.121 | 0.000135 |
ORF7a | 3 | I3T | aTt | aCt | 1 | 1 | AY.16 | 0.00038 |
ORF7a | 3 | I3I | atT | atC | 1 | 1 | AY.16.1 | 0.00047 |
ORF7a | 3 | I3I | atT | atC | 1 | 1 | AY.19 | 0.00114 |
ORF7a | 3 | I3S | aTt | aGt | 1 | 1 | AY.20 | 0.000039 |
ORF7a | 3 | I3V | Att | Gtt | 1 | 1 | AY.20 | 0.000039 |
ORF7a | 3 | I3N | aTt | aAt | 1 | 1 | AY.23 | 0.00007 |
ORF7a | 3 | I3S | aTt | aGt | 1 | 1 | AY.25 | 0.000006 |
ORF7a | 3 | I3T | aTt | aCt | 1 | 1 | AY.26 | 0.000028 |
ORF7a | 3 | I3del1 | atT | at- | 1 | 1 | AY.26 | 0.000028 |
ORF7a | 3 | I3I | atT | atC | 1 | 1 | AY.27 | 0.000065 |
ORF7a | 3 | I3del1 | atT | at- | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 3 | I3I | atT | atA | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 3 | I3F | Att | Ttt | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 3 | I3V | Att | Gtt | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 3 | I3S | aTt | aGt | 1 | 1 | AY.3 | 0.00001 |
ORF7a | 3 | I3del1 | atT | at- | 1 | 1 | AY.3 | 0.00001 |
ORF7a | 3 | I3T | aTt | aCt | 1 | 1 | AY.3 | 0.00001 |
ORF7a | 3 | I3T | aTt | aCt | 1 | 1 | AY.30 | 0.000396 |
ORF7a | 3 | I3V | Att | Gtt | 1 | 1 | AY.30 | 0.000396 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | AY.32 | 0.000532 |
ORF7a | 3 | I3F | Att | Ttt | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 3 | I3N | aTt | aAt | 1 | 1 | AY.34 | 0.000097 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | AY.34 | 0.000097 |
ORF7a | 3 | I3F | Att | Ttt | 1 | 1 | AY.35 | 0.000233 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | AY.36 | 0.000148 |
ORF7a | 3 | I3I | atT | atC | 1 | 1 | AY.36 | 0.000148 |
ORF7a | 3 | I3T | aTt | aCt | 1 | 1 | AY.37 | 0.000316 |
ORF7a | 3 | I3S | aTt | aGt | 1 | 1 | AY.38 | 0.000499 |
ORF7a | 3 | I3del2 | aTT | a-- | 1 | 1 | AY.39 | 0.000025 |
ORF7a | 3 | I3M | atT | atG | 1 | 1 | AY.4 | 0.000002 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF7a | 3 | I3I | atT | atC | 1 | 1 | AY.4.2 | 0.000022 |
ORF7a | 3 | I3F | Att | Ttt | 1 | 1 | AY.4.2 | 0.000022 |
ORF7a | 3 | I3del2 | aTT | a-- | 1 | 1 | AY.4.3 | 0.000842 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF7a | 3 | I3T | aTt | aCt | 1 | 1 | AY.41 | 0.000294 |
ORF7a | 3 | I3F | Att | Ttt | 1 | 1 | AY.42 | 0.00004 |
ORF7a | 3 | I3del2 | aTT | a-- | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 3 | I3S | aTt | aGt | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 3 | I3N | aTt | aAt | 1 | 1 | AY.44 | 0.000006 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | AY.45 | 0.000122 |
ORF7a | 3 | I3V | Att | Gtt | 1 | 1 | AY.45 | 0.000122 |
ORF7a | 3 | I3I | atT | atC | 1 | 1 | AY.47 | 0.000031 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | AY.5 | 0.000021 |
ORF7a | 3 | I3I | atT | atC | 1 | 1 | AY.5 | 0.000021 |
ORF7a | 3 | I3T | aTt | aCt | 1 | 1 | AY.5 | 0.000021 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | AY.54 | 0.000095 |
ORF7a | 3 | I3F | Att | Ttt | 1 | 1 | AY.6 | 0.000041 |
ORF7a | 3 | I3S | aTt | aGt | 1 | 1 | AY.64 | 0.000595 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | AY.73 | 0.000665 |
ORF7a | 3 | I3I | atT | atC | 1 | 1 | AY.75 | 0.000056 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | AY.79 | 0.001211 |
ORF7a | 3 | I3S | aTt | aGt | 1 | 1 | AY.84 | 0.000437 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | AY.84 | 0.000437 |
ORF7a | 3 | I3I | atT | atC | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 3 | I3F | Att | Ttt | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 3 | I3V | Att | Gtt | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 3 | I3I | atT | atC | 1 | 1 | AY.91 | 0.00073 |
ORF7a | 3 | I3F | Att | Ttt | 1 | 1 | AY.93 | 0.000273 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | AY.94 | 0.000443 |
ORF7a | 3 | I3S | aTt | aGt | 1 | 1 | AY.98 | 0.000079 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF7a | 3 | I3M | atT | atG | 1 | 1 | B | 0.000128 |
ORF7a | 3 | I3V | Att | Gtt | 1 | 1 | B | 0.000128 |
ORF7a | 3 | I3N | aTt | aAt | 1 | 1 | B.1.1 | 0.000018 |
ORF7a | 3 | I3L | AtT | TtA | 1 | 1 | B.1.1.176 | 0.000439 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF7a | 3 | I3T | aTt | aCt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF7a | 3 | I3del1 | atT | at- | 1 | 1 | B.1.1.214 | 0.000055 |
ORF7a | 3 | I3T | aTt | aCt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF7a | 3 | I3I | atT | atC | 1 | 1 | B.1.1.28 | 0.000311 |
ORF7a | 3 | I3T | aTt | aCt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF7a | 3 | I3L | Att | Ctt | 1 | 1 | B.1.1.47 | 0.005348 |
ORF7a | 3 | I3L | AtT | CtA | 1 | 1 | B.1.1.48 | 0.002874 |
ORF7a | 3 | I3T | aTt | aCt | 1 | 1 | B.1.1.48 | 0.002874 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | B.1.1.486 | 0.001577 |
ORF7a | 3 | I3L | Att | Ctt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF7a | 3 | I3I | atT | atC | 1 | 1 | B.1.1.63 | 0.000386 |
ORF7a | 3 | I3P | ATt | CCt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 3 | I3A | ATT | GCA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 3 | I3N | aTt | aAt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 3 | I3I | atT | atC | 1 | 1 | B.1.1.71 | 0.006061 |
ORF7a | 3 | I3I | atT | atC | 1 | 1 | B.1.1.83 | 0.00271 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | B.1.115 | 0.021739 |
ORF7a | 3 | I3T | aTt | aCt | 1 | 1 | B.1.119 | 0.010526 |
ORF7a | 3 | I3L | Att | Ctt | 1 | 1 | B.1.157 | 0.002985 |
ORF7a | 3 | I3S | aTt | aGt | 1 | 1 | B.1.160 | 0.000031 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | B.1.161 | 0.017241 |
ORF7a | 3 | I3F | Att | Ttt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7a | 3 | I3T | aTt | aCt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7a | 3 | I3M | atT | atG | 1 | 1 | B.1.177.44 | 0.000519 |
ORF7a | 3 | I3T | aTt | aCt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF7a | 3 | I3T | aTt | aCt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF7a | 3 | I3V | Att | Gtt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF7a | 3 | I3L | AtT | TtA | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 3 | I3del1 | atT | at- | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | B.1.221.1 | 0.002907 |
ORF7a | 3 | I3V | Att | Gtt | 1 | 1 | B.1.223 | 0.002778 |
ORF7a | 3 | I3V | Att | Gtt | 1 | 1 | B.1.232 | 0.000537 |
ORF7a | 3 | I3T | aTt | aCt | 1 | 1 | B.1.243 | 0.00007 |
ORF7a | 3 | I3S | aTt | aGt | 1 | 1 | B.1.243 | 0.00007 |
ORF7a | 3 | I3V | Att | Gtt | 1 | 1 | B.1.243 | 0.00007 |
ORF7a | 3 | I3L | Att | Ctt | 1 | 1 | B.1.243 | 0.00007 |
ORF7a | 3 | I3V | Att | Gtt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF7a | 3 | I3I | atT | atC | 1 | 1 | B.1.349 | 0.000715 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF7a | 3 | I3V | Att | Gtt | 1 | 1 | B.1.36.10 | 0.004785 |
ORF7a | 3 | I3V | Att | Gtt | 1 | 1 | B.1.36.16 | 0.001425 |
ORF7a | 3 | I3I | atT | atC | 1 | 1 | B.1.366 | 0.004878 |
ORF7a | 3 | I3F | Att | Ttt | 1 | 1 | B.1.416 | 0.001269 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF7a | 3 | I3V | Att | Gtt | 1 | 1 | B.1.427 | 0.00005 |
ORF7a | 3 | I3N | aTt | aAt | 1 | 1 | B.1.427 | 0.00005 |
ORF7a | 3 | I3I | atT | atC | 1 | 1 | B.1.429 | 0.000024 |
ORF7a | 3 | I3T | aTt | aCt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7a | 3 | I3V | Att | Gtt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | B.1.470 | 0.001404 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF7a | 3 | I3K | aTT | aAA | 1 | 1 | B.1.546 | 0.003704 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF7a | 3 | I3I | atT | atC | 1 | 1 | B.1.596 | 0.000087 |
ORF7a | 3 | I3F | Att | Ttt | 1 | 1 | B.1.596 | 0.000087 |
ORF7a | 3 | I3M | atT | atG | 1 | 1 | B.1.609 | 0.000479 |
ORF7a | 3 | I3V | Att | Gtt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 3 | I3I | atT | atC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 3 | I3M | atT | atG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF7a | 3 | I3V | Att | Gtt | 1 | 1 | B.1.621 | 0.000089 |
ORF7a | 3 | I3T | aTt | aCt | 1 | 1 | B.1.621 | 0.000089 |
ORF7a | 3 | I3L | Att | Ctt | 1 | 1 | B.1.621 | 0.000089 |
ORF7a | 3 | I3I | atT | atC | 1 | 1 | B.1.621 | 0.000089 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF7a | 3 | I3V | Att | Gtt | 1 | 1 | B.1.637 | 0.000073 |
ORF7a | 3 | I3S | aTt | aGt | 1 | 1 | B.1.637 | 0.000073 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | B.1.637 | 0.000073 |
ORF7a | 3 | I3T | aTt | aCt | 1 | 1 | B.1.637 | 0.000073 |
ORF7a | 3 | I3I | atT | atC | 1 | 1 | B.39 | 0.002331 |
ORF7a | 3 | I3L | Att | Ctt | 1 | 1 | B.4 | 0.002208 |
ORF7a | 3 | I3T | aTt | aCt | 1 | 1 | B.4.4 | 0.018868 |
ORF7a | 3 | I3F | Att | Ttt | 1 | 1 | C.1 | 0.002392 |
ORF7a | 3 | I3S | aTt | aGt | 1 | 1 | C.37 | 0.000116 |
ORF7a | 3 | I3T | aTt | aCt | 1 | 1 | D.2 | 0.000075 |
ORF7a | 3 | I3V | Att | Gtt | 1 | 1 | D.2 | 0.000075 |
ORF7a | 3 | I3L | Att | Ctt | 1 | 1 | P.1 | 0.000016 |
ORF7a | 3 | I3del2 | ATt | --t | 1 | 1 | P.1 | 0.000016 |
ORF7a | 3 | I3N | aTt | aAt | 1 | 1 | P.1.14 | 0.000048 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | P.1.14 | 0.000048 |
ORF7a | 3 | I3L | Att | Ctt | 1 | 1 | P.1.15 | 0.000232 |
ORF7a | 3 | I3T | aTt | aCt | 1 | 1 | P.1.16 | 0.000374 |
ORF7a | 3 | I3L | Att | Ctt | 1 | 1 | P.1.2 | 0.001156 |
ORF7a | 3 | I3T | aTt | aCt | 1 | 1 | Q.1 | 0.000126 |
ORF7a | 3 | I3T | aTt | aCt | 1 | 1 | Q.3 | 0.000145 |
ORF7a | 3 | I3F | Att | Ttt | 1 | 1 | Q.8 | 0.000165 |
ORF7a | 3 | I3I | atT | atC | 1 | 1 | Q.8 | 0.000165 |
ORF7a | 3 | I3del | ATT | --- | 1 | 1 | U.3 | 0.003861 |
ORF7a | 3 | I3I | atT | atC | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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