CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 29

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a29V29LnonsynGtaTta287028290.98571427478-27480
ORF7a29V29LnonsynGtaCta2870400.013937327478-27480
ORF7a29V29LnonsynGtACtG287010.00034843227478-27480
ORF7a29V29deldelGTA---978978127478-27480
ORF7a29V29AnonsyngTagCa224224127478-27480
ORF7a29V29InonsynGtaAta1871860.99465227478-27480
ORF7a29V29InonsynGtAAtC18710.0053475927478-27480
ORF7a29V29VsyngtAgtG139880.63309427478-27480
ORF7a29V29VsyngtAgtC139430.30935327478-27480
ORF7a29V29VsyngtAgtT13980.05755427478-27480
ORF7a29V29del1delgtAgt-57450.78947427478-27480
ORF7a29V29del1delGta-ta57120.21052627478-27480
ORF7a29V29EnonsyngTagAa2424127478-27480
ORF7a29V29del2delgTAg--22180.81818227478-27480
ORF7a29V29del2delGTa--a2240.18181827478-27480
ORF7a29V29KnonsynGTaAAa44127478-27480
ORF7a29V29GnonsyngTagGa33127478-27480
ORF7a29V29SnonsynGTAAGT22127478-27480
ORF7a29V29XnonsynGTaTGa22127478-27480
ORF7a29V29MnonsynGtAAtG22127478-27480
ORF7a29V29PnonsynGTACCC11127478-27480
ORF7a29V29FnonsynGtATtC11127478-27480
ORF7a29V29TnonsynGTaACa11127478-27480

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a29V29LGtaTta28292870All0.000541
ORF7a29V29LGtaCta402870All0.000008
ORF7a29V29LGtACtG12870All0
ORF7a29V29delGTA---978978All0.000187
ORF7a29V29LGtaTta364365AY.40.000567
ORF7a29V29LGtaCta1365AY.40.000002
ORF7a29V29LGtaTta345357B.1.1.70.000309
ORF7a29V29LGtaCta12357B.1.1.70.000011
ORF7a29V29LGtaTta286290B.1.617.20.001077
ORF7a29V29LGtaCta4290B.1.617.20.000015
ORF7a29V29LGtaTta272276AY.430.001205
ORF7a29V29LGtaCta4276AY.430.000018
ORF7a29V29delGTA---248248B.1.1.70.000222
ORF7a29V29AgTagCa224224All0.000043
ORF7a29V29delGTA---221221AY.40.000344
ORF7a29V29LGtaTta210217AY.250.001263
ORF7a29V29LGtaCta7217AY.250.000042
ORF7a29V29IGtaAta186187All0.000036
ORF7a29V29IGtAAtC1187All0
ORF7a29V29delGTA---179179B.1.177.210.013688
ORF7a29V29VgtAgtG88139All0.000017
ORF7a29V29VgtAgtC43139All0.000008
ORF7a29V29VgtAgtT8139All0.000002
ORF7a29V29LGtaTta121122AY.1030.000751
ORF7a29V29LGtaCta1122AY.1030.000006
ORF7a29V29IGtaAta8787B.1.1.70.000078
ORF7a29V29AgTagCa8383B.1.1.70.000074
ORF7a29V29LGtaTta7474C.140.320346
ORF7a29V29LGtaTta7373B.1.619.10.046825
ORF7a29V29LGtaTta7070AY.1210.009472
ORF7a29V29LGtaTta6767B.1.4290.001576
ORF7a29V29del1gtAgt-4557All0.000009
ORF7a29V29del1Gta-ta1257All0.000002
ORF7a29V29LGtaTta5050B.1.4800.124378
ORF7a29V29LGtaTta4747AY.1060.01574
ORF7a29V29LGtaTta4345B.1.20.000379
ORF7a29V29LGtaCta245B.1.20.000018
ORF7a29V29LGtaTta3636B.10.00033
ORF7a29V29LGtaTta3133P.10.000488
ORF7a29V29LGtaCta233P.10.000032
ORF7a29V29VgtAgtC1730B.1.1.70.000015
ORF7a29V29VgtAgtG1330B.1.1.70.000012
ORF7a29V29delGTA---2727AY.290.000426
ORF7a29V29LGtaTta2727AY.290.000426
ORF7a29V29EgTagAa2424All0.000005
ORF7a29V29AgTagCa2323P.10.000362
ORF7a29V29del2gTAg--1822All0.000003
ORF7a29V29del2GTa--a422All0.000001
ORF7a29V29delGTA---2222AY.250.000132
ORF7a29V29LGtaTta2222AY.98.10.001065
ORF7a29V29delGTA---2121AY.440.000128
ORF7a29V29LGtaTta2020AK.20.909091
ORF7a29V29LGtaTta2020AY.420.000805
ORF7a29V29LGtaTta2020B.1.1770.000263
ORF7a29V29LGtaTta1919AY.30.000189
ORF7a29V29LGtaTta1919AY.440.000116
ORF7a29V29LGtaTta1919C.370.002205
ORF7a29V29IGtaAta1818AY.1110.003297
ORF7a29V29delGTA---1717AY.1030.000106
ORF7a29V29delGTA---1717AY.30.000169
ORF7a29V29delGTA---1616AY.7.20.008949
ORF7a29V29LGtaTta1616AY.750.000896
ORF7a29V29LGtaTta1616B.1.10.00029
ORF7a29V29LGtaTta1616B.1.351.50.009592
ORF7a29V29LGtaTta1515AY.390.000371
ORF7a29V29VgtAgtG1515B.1.5650.012156
ORF7a29V29LGtaTta1414AY.1100.001578
ORF7a29V29AgTagCa1414B.1.4270.000707
ORF7a29V29LGtaTta1414B.1.438.10.001502
ORF7a29V29VgtAgtG1014P.10.000158
ORF7a29V29VgtAgtT314P.10.000047
ORF7a29V29VgtAgtC114P.10.000016
ORF7a29V29LGtaTta1313AY.1000.000598
ORF7a29V29IGtaAta1313AY.30.000129
ORF7a29V29LGtaTta1313AY.330.000868
ORF7a29V29LGtaTta1313B.1.1.1590.060748
ORF7a29V29del1Gta-ta1013B.1.1.70.000009
ORF7a29V29del1gtAgt-313B.1.1.70.000003
ORF7a29V29LGtaTta1313B.1.177.160.008638
ORF7a29V29LGtaTta1012AY.1020.000265
ORF7a29V29LGtaCta212AY.1020.000053
ORF7a29V29del1gtAgt-1212AY.1030.000075
ORF7a29V29AgTagCa1212AY.40.000019
ORF7a29V29LGtaTta1212B.1.3510.000357
ORF7a29V29LGtaTta1111AY.200.000428
ORF7a29V29del1gtAgt-1111AY.290.000174
ORF7a29V29EgTagAa1111AY.40.000017
ORF7a29V29delGTA---1111AY.430.000049
ORF7a29V29delGTA---1111B.1.1.2140.00061
ORF7a29V29LGtaTta1111B.1.30.028796
ORF7a29V29LGtaTta1011B.1.5260.000235
ORF7a29V29LGtaCta111B.1.5260.000024
ORF7a29V29delGTA---1111B.1.617.20.000041
ORF7a29V29AgTagCa1010AY.440.000061
ORF7a29V29delGTA---1010B.10.000092
ORF7a29V29AgTagCa1010B.1.4290.000235
ORF7a29V29LGtaTta99AY.460.000937
ORF7a29V29IGtaAta99AY.670.004178
ORF7a29V29delGTA---99B.1.1.2840.000967
ORF7a29V29IGtaAta99B.1.617.20.000034
ORF7a29V29LGtaTta99B.1.6210.000797
ORF7a29V29delGTA---99C.370.001045
ORF7a29V29delGTA---99P.10.000142
ORF7a29V29AgTagCa88AY.1030.00005
ORF7a29V29VgtAgtC88AY.250.000048
ORF7a29V29LGtaTta88AY.50.000165
ORF7a29V29LGtaTta88AY.90.000541
ORF7a29V29VgtAgtG68B.1.4290.000141
ORF7a29V29VgtAgtT28B.1.4290.000047
ORF7a29V29LGtaTta88R.10.00072
ORF7a29V29LGtaTta77AY.1130.000997
ORF7a29V29del2gTAg--77AY.290.00011
ORF7a29V29LGtaTta67AY.70.001176
ORF7a29V29LGtaCta17AY.70.000196
ORF7a29V29LGtaTta77B.1.1600.000218
ORF7a29V29delGTA---77B.1.20.000062
ORF7a29V29IGtaAta66AY.1030.000037
ORF7a29V29LGtaTta66AY.1170.000507
ORF7a29V29LGtaTta66AY.230.000418
ORF7a29V29LGtaTta66AY.260.00017
ORF7a29V29LGtaTta66AY.4.20.00013
ORF7a29V29VgtAgtG36AY.440.000018
ORF7a29V29VgtAgtC36AY.440.000018
ORF7a29V29delGTA---66AY.470.000187
ORF7a29V29LGtaTta56AY.5.30.001687
ORF7a29V29LGtACtG16AY.5.30.000337
ORF7a29V29LGtaTta66AY.640.003571
ORF7a29V29LGtaTta66B.1.2210.000426
ORF7a29V29IGtaAta66B.1.36.180.002521
ORF7a29V29AgTagCa66B.1.617.20.000023
ORF7a29V29LGtaTta55AY.1050.003215
ORF7a29V29VgtAgtG55AY.1110.000916
ORF7a29V29delGTA---55AY.1180.000313
ORF7a29V29delGTA---55AY.260.000142
ORF7a29V29LGtaTta55AY.380.002496
ORF7a29V29delGTA---55AY.390.000124
ORF7a29V29LGtaTta45AY.39.10.000158
ORF7a29V29LGtaCta15AY.39.10.00004
ORF7a29V29LGtaTta55AY.60.000206
ORF7a29V29LGtaTta55AY.9.10.000419
ORF7a29V29LGtaTta55B.1.1.10.001633
ORF7a29V29EgTagAa55B.1.1.70.000004
ORF7a29V29delGTA---55B.1.177.440.002595
ORF7a29V29AgTagCa55B.1.20.000044
ORF7a29V29LGtaTta55B.1.2430.000348
ORF7a29V29LGtaTta55B.1.36.180.002101
ORF7a29V29IGtaAta55B.1.4290.000118
ORF7a29V29delGTA---55B.1.4290.000118
ORF7a29V29VgtAgtG35B.1.617.20.000011
ORF7a29V29VgtAgtT15B.1.617.20.000004
ORF7a29V29VgtAgtC15B.1.617.20.000004
ORF7a29V29LGtaTta55P.1.140.000239
ORF7a29V29LGtaTta55P.20.000933
ORF7a29V29LGtaTta44A0.001548
ORF7a29V29KGTaAAa44All0.000001
ORF7a29V29LGtaTta44AY.190.004561
ORF7a29V29del1gtAgt-34AY.250.000018
ORF7a29V29del2gTAg--24AY.250.000012
ORF7a29V29del2GTa--a24AY.250.000012
ORF7a29V29del1Gta-ta14AY.250.000006
ORF7a29V29del1gtAgt-44AY.40.000006
ORF7a29V29VgtAgtG44AY.40.000006
ORF7a29V29LGtaTta44AY.4.2.10.000596
ORF7a29V29IGtaAta44AY.440.000024
ORF7a29V29LGtaTta44AY.470.000124
ORF7a29V29AgTagCa44AY.540.000381
ORF7a29V29LGtaTta44AY.710.0019
ORF7a29V29delGTA---44AY.98.10.000194
ORF7a29V29delGTA---44B.1.10.000073
ORF7a29V29LGtaTta44B.1.1.1530.004381
ORF7a29V29LGtaTta44B.1.1.3020.008299
ORF7a29V29LGtaTta44B.1.177.480.0125
ORF7a29V29LGtaTta44B.1.4270.000202
ORF7a29V29AgTagCa44B.1.6370.000292
ORF7a29V29GgTagGa33All0.000001
ORF7a29V29VgtAgtG33AY.1030.000019
ORF7a29V29KGTaAAa33AY.1060.001005
ORF7a29V29LGtaTta33AY.1140.000693
ORF7a29V29del1gtAgt-33AY.1180.000188
ORF7a29V29LGtaTta33AY.160.001139
ORF7a29V29delGTA---33AY.200.000117
ORF7a29V29AgTagCa33AY.290.000047
ORF7a29V29LGtaTta33AY.3.10.000256
ORF7a29V29delGTA---33AY.330.0002
ORF7a29V29LGtaTta33AY.34.10.00153
ORF7a29V29EgTagAa33AY.390.000074
ORF7a29V29VgtAgtC23AY.390.000049
ORF7a29V29VgtAgtG13AY.390.000025
ORF7a29V29IGtaAta33AY.40.000005
ORF7a29V29GgTagGa33AY.40.000005
ORF7a29V29AgTagCa33AY.430.000013
ORF7a29V29LGtaTta23AY.46.50.000397
ORF7a29V29LGtaCta13AY.46.50.000198
ORF7a29V29LGtaTta33AY.540.000286
ORF7a29V29LGtaTta33AY.610.000314
ORF7a29V29VgtAgtG33B.10.000027
ORF7a29V29LGtaTta33B.1.1.2220.000612
ORF7a29V29LGtaTta33B.1.1.2940.003797
ORF7a29V29LGtaTta33B.1.1.3970.006757
ORF7a29V29LGtaTta33B.1.1.5160.2
ORF7a29V29LGtaTta33B.1.1.5190.000119
ORF7a29V29AgTagCa33B.1.1770.00004
ORF7a29V29delGTA---33B.1.2340.000396
ORF7a29V29LGtaTta33B.1.2400.000647
ORF7a29V29LGtaTta33B.1.2580.0002
ORF7a29V29delGTA---33B.1.3510.000089
ORF7a29V29LGtaTta33B.1.360.000438
ORF7a29V29LGtaTta33B.1.36.210.006479
ORF7a29V29LGtaTta33B.1.3750.002459
ORF7a29V29delGTA---33B.1.5260.000071
ORF7a29V29LGtaTta33B.1.5750.00091
ORF7a29V29del1gtAgt-23B.1.617.20.000008
ORF7a29V29del1Gta-ta13B.1.617.20.000004
ORF7a29V29delGTA---33B.1.6260.017143
ORF7a29V29LGtaTta33P.1.10.000953
ORF7a29V29LGtaTta33P.1.130.002695
ORF7a29V29LGtaTta33P.1.150.000697
ORF7a29V29LGtaTta33P.1.170.000485
ORF7a29V29delGTA---33Q.80.000495
ORF7a29V29delGTA---220.111111
ORF7a29V29delGTA---22A.280.005291
ORF7a29V29LGtaTta22AB.10.016393
ORF7a29V29SGTAAGT22All0
ORF7a29V29MGtAAtG22All0
ORF7a29V29XGTaTGa22All0
ORF7a29V29LGtaTta22AY.1010.000981
ORF7a29V29VgtAgtG22AY.1020.000053
ORF7a29V29AgTagCa22AY.1060.00067
ORF7a29V29AgTagCa22AY.1180.000125
ORF7a29V29delGTA---22AY.1190.000071
ORF7a29V29LGtaTta22AY.120.000632
ORF7a29V29delGTA---22AY.1210.000271
ORF7a29V29LGtaTta22AY.140.000176
ORF7a29V29IGtaAta22AY.200.000078
ORF7a29V29IGtaAta22AY.250.000012
ORF7a29V29EgTagAa22AY.250.000012
ORF7a29V29LGtaTta22AY.270.000129
ORF7a29V29IGtaAta22AY.290.000032
ORF7a29V29delGTA---22AY.29.10.000441
ORF7a29V29VgtAgtC22AY.30.00002
ORF7a29V29AgTagCa22AY.30.00002
ORF7a29V29del1gtAgt-22AY.30.00002
ORF7a29V29VgtAgtG22AY.3.10.000171
ORF7a29V29LGtaTta22AY.360.000296
ORF7a29V29del2gTAg--22AY.390.000049
ORF7a29V29del2GTa--a12AY.40.000002
ORF7a29V29del2gTAg--12AY.40.000002
ORF7a29V29VgtAgtC22AY.430.000009
ORF7a29V29LGtaTta22AY.590.001059
ORF7a29V29delGTA---22AY.750.000112
ORF7a29V29LGtaTta22AY.80.001212
ORF7a29V29delGTA---22AY.90.000135
ORF7a29V29LGtaTta22AY.910.001461
ORF7a29V29LGtaTta22AY.99.20.000184
ORF7a29V29IGtaAta22B.10.000018
ORF7a29V29AgTagCa22B.1.10.000036
ORF7a29V29LGtaTta22B.1.1.2140.000111
ORF7a29V29delGTA---22B.1.1.250.001137
ORF7a29V29LGtaTta22B.1.1.280.000622
ORF7a29V29LGtaTta22B.1.1.3110.000716
ORF7a29V29del1gtAgt-22B.1.1.5190.000079
ORF7a29V29LGtaTta22B.1.1.580.010753
ORF7a29V29delGTA---22B.1.1600.000062
ORF7a29V29LGtaTta22B.1.160.260.004843
ORF7a29V29LGtaTta22B.1.177.560.001335
ORF7a29V29VgtAgtC12B.1.177.600.000218
ORF7a29V29VgtAgtT12B.1.177.600.000218
ORF7a29V29LGtaTta22B.1.177.800.003824
ORF7a29V29delGTA---22B.1.177.860.000367
ORF7a29V29delGTA---22B.1.2580.000133
ORF7a29V29delGTA---22B.1.258.110.000793
ORF7a29V29delGTA---22B.1.360.000292
ORF7a29V29LGtaTta22B.1.36.80.002
ORF7a29V29LGtaTta22B.1.466.20.000782
ORF7a29V29VgtAgtG22B.1.466.20.000782
ORF7a29V29LGtaTta22B.1.5240.002813
ORF7a29V29AgTagCa22B.1.5750.000607
ORF7a29V29LGtaTta22B.1.5860.021978
ORF7a29V29LGtaTta22B.1.5960.000174
ORF7a29V29LGtaTta22B.1.6370.000146
ORF7a29V29LGtaTta22B.400.000729
ORF7a29V29delGTA---22C.36.30.001134
ORF7a29V29LGtaTta22C.40.02
ORF7a29V29AgTagCa22P.1.10.10.01626
ORF7a29V29AgTagCa22P.1.70.000639
ORF7a29V29LGtaTta22Q.80.00033
ORF7a29V29delGTA---11A0.000387
ORF7a29V29VgtAgtG11A.10.000282
ORF7a29V29LGtaTta11A.10.000282
ORF7a29V29LGtaTta11A.2.40.003367
ORF7a29V29LGtaTta11A.230.010526
ORF7a29V29LGtaTta11A.23.10.000704
ORF7a29V29LGtaTta11A.290.005319
ORF7a29V29LGtaTta11AD.20.000219
ORF7a29V29TGTaACa11All0
ORF7a29V29FGtATtC11All0
ORF7a29V29PGTACCC11All0
ORF7a29V29IGtaAta11AY.100.00053
ORF7a29V29delGTA---11AY.1000.000046
ORF7a29V29VgtAgtG11AY.1000.000046
ORF7a29V29AgTagCa11AY.1000.000046
ORF7a29V29AgTagCa11AY.1020.000027
ORF7a29V29SGTAAGT11AY.1030.000006
ORF7a29V29delGTA---11AY.1080.001103
ORF7a29V29delGTA---11AY.1100.000113
ORF7a29V29del1gtAgt-11AY.1130.000142
ORF7a29V29delGTA---11AY.1130.000142
ORF7a29V29VgtAgtG11AY.116.10.000311
ORF7a29V29delGTA---11AY.116.10.000311
ORF7a29V29del2gTAg--11AY.1190.000035
ORF7a29V29VgtAgtG11AY.1200.000037
ORF7a29V29LGtaTta11AY.120.10.000321
ORF7a29V29delGTA---11AY.120.10.000321
ORF7a29V29VgtAgtC11AY.1210.000135
ORF7a29V29LGtaTta11AY.130.000161
ORF7a29V29delGTA---11AY.190.00114
ORF7a29V29del2gTAg--11AY.200.000039
ORF7a29V29VgtAgtC11AY.240.000431
ORF7a29V29VgtAgtG11AY.260.000028
ORF7a29V29VgtAgtG11AY.290.000016
ORF7a29V29KGTaAAa11AY.30.00001
ORF7a29V29AgTagCa11AY.300.000396
ORF7a29V29LGtaTta11AY.320.000532
ORF7a29V29delGTA---11AY.340.000097
ORF7a29V29LGtaTta11AY.340.000097
ORF7a29V29delGTA---11AY.34.10.00051
ORF7a29V29AgTagCa11AY.34.10.00051
ORF7a29V29LGtaTta11AY.350.000233
ORF7a29V29AgTagCa11AY.360.000148
ORF7a29V29VgtAgtG11AY.360.000148
ORF7a29V29VgtAgtC11AY.39.10.00004
ORF7a29V29VgtAgtG11AY.4.20.000022
ORF7a29V29delGTA---11AY.4.20.000022
ORF7a29V29EgTagAa11AY.4.2.10.000149
ORF7a29V29LGtaTta11AY.4.50.000107
ORF7a29V29delGTA---11AY.420.00004
ORF7a29V29XGTaTGa11AY.430.000004
ORF7a29V29EgTagAa11AY.430.000004
ORF7a29V29XGTaTGa11AY.440.000006
ORF7a29V29delGTA---11AY.450.000122
ORF7a29V29VgtAgtG11AY.450.000122
ORF7a29V29del2GTa--a11AY.450.000122
ORF7a29V29LGtaTta11AY.450.000122
ORF7a29V29IGtaAta11AY.450.000122
ORF7a29V29delGTA---11AY.460.000104
ORF7a29V29LGtaTta11AY.46.30.000934
ORF7a29V29PGTACCC11AY.46.60.000072
ORF7a29V29LGtaTta11AY.46.60.000072
ORF7a29V29LGtaTta11AY.5.40.000277
ORF7a29V29delGTA---11AY.5.40.000277
ORF7a29V29AgTagCa11AY.530.000288
ORF7a29V29VgtAgtC11AY.530.000288
ORF7a29V29delGTA---11AY.540.000095
ORF7a29V29LGtaTta11AY.550.000917
ORF7a29V29del2gTAg--11AY.60.000041
ORF7a29V29LGtaTta11AY.620.000436
ORF7a29V29LGtaTta11AY.650.000533
ORF7a29V29IGtaAta11AY.650.000533
ORF7a29V29MGtAAtG11AY.660.00107
ORF7a29V29delGTA---11AY.660.00107
ORF7a29V29delGTA---11AY.7.10.000113
ORF7a29V29LGtaTta11AY.7.10.000113
ORF7a29V29LGtaTta11AY.7.20.000559
ORF7a29V29IGtaAta11AY.7.20.000559
ORF7a29V29LGtaTta11AY.720.001361
ORF7a29V29del2gTAg--11AY.760.004831
ORF7a29V29delGTA---11AY.790.001211
ORF7a29V29MGtAAtG11AY.790.001211
ORF7a29V29LGtaTta11AY.830.001724
ORF7a29V29LGtaTta11AY.840.000437
ORF7a29V29del1gtAgt-11AY.9.10.000084
ORF7a29V29AgTagCa11AY.9.10.000084
ORF7a29V29LGtaTta11AY.9.20.000037
ORF7a29V29AgTagCa11AY.9.20.000037
ORF7a29V29LGtaTta11AY.920.000287
ORF7a29V29VgtAgtG11AY.930.000273
ORF7a29V29LGtaTta11AY.980.000079
ORF7a29V29IGtAAtC11B0.000128
ORF7a29V29LGtaTta11B0.000128
ORF7a29V29AgTagCa11B.10.000009
ORF7a29V29IGtaAta11B.1.10.000018
ORF7a29V29LGtaTta11B.1.1.1570.000913
ORF7a29V29delGTA---11B.1.1.2070.001182
ORF7a29V29AgTagCa11B.1.1.2140.000055
ORF7a29V29LGtaTta11B.1.1.2160.00089
ORF7a29V29VgtAgtC11B.1.1.2220.000204
ORF7a29V29FGtATtC11B.1.1.250.000569
ORF7a29V29LGtaTta11B.1.1.2770.000759
ORF7a29V29IGtaAta11B.1.1.280.000311
ORF7a29V29AgTagCa11B.1.1.3050.003861
ORF7a29V29LGtaTta11B.1.1.3060.000438
ORF7a29V29IGtaAta11B.1.1.3060.000438
ORF7a29V29LGtaTta11B.1.1.3160.000925
ORF7a29V29VgtAgtG11B.1.1.3160.000925
ORF7a29V29LGtaTta11B.1.1.3480.000796
ORF7a29V29AgTagCa11B.1.1.370.000193
ORF7a29V29LGtaTta11B.1.1.4040.015873
ORF7a29V29LGtaTta11B.1.1.4190.007407
ORF7a29V29delGTA---11B.1.1.5190.00004
ORF7a29V29AgTagCa11B.1.1.5190.00004
ORF7a29V29IGtaAta11B.1.1.5190.00004
ORF7a29V29delGTA---11B.1.1.5220.017241
ORF7a29V29LGtaTta11B.1.1.5250.005464
ORF7a29V29LGtaTta11B.1.1.630.000386
ORF7a29V29TGTaACa11B.1.1.70.000001
ORF7a29V29VgtAgtG11B.1.1.860.035714
ORF7a29V29LGtaTta11B.1.1100.004525
ORF7a29V29delGTA---11B.1.1150.021739
ORF7a29V29LGtaTta11B.1.160.80.001289
ORF7a29V29VgtAgtG11B.1.1770.000013
ORF7a29V29delGTA---11B.1.1770.000013
ORF7a29V29IGtaAta11B.1.1770.000013
ORF7a29V29LGtaTta11B.1.177.100.000878
ORF7a29V29LGtaTta11B.1.177.210.000076
ORF7a29V29LGtaTta11B.1.177.410.0025
ORF7a29V29LGtaTta11B.1.177.460.000918
ORF7a29V29LGtaTta11B.1.177.60.000977
ORF7a29V29LGtaTta11B.1.177.600.000218
ORF7a29V29AgTagCa11B.1.177.630.002703
ORF7a29V29LGtaTta11B.1.177.650.000665
ORF7a29V29delGTA---11B.1.177.690.001484
ORF7a29V29VgtAgtT11B.1.177.810.000189
ORF7a29V29delGTA---11B.1.177.810.000189
ORF7a29V29AgTagCa11B.1.177.820.000477
ORF7a29V29delGTA---11B.1.177.830.001481
ORF7a29V29VgtAgtG11B.1.20.000009
ORF7a29V29delGTA---11B.1.214.20.0006
ORF7a29V29LGtaCta11B.1.2190.009434
ORF7a29V29LGtaTta11B.1.2200.01087
ORF7a29V29delGTA---11B.1.2210.000071
ORF7a29V29delGTA---11B.1.2400.000216
ORF7a29V29IGtaAta11B.1.2580.000067
ORF7a29V29LGtaTta11B.1.258.160.001637
ORF7a29V29LGtaTta11B.1.258.170.000104
ORF7a29V29LGtaTta11B.1.258.240.010753
ORF7a29V29LGtaTta11B.1.2790.000514
ORF7a29V29LGtaTta11B.1.2980.002114
ORF7a29V29AgTagCa11B.1.3510.00003
ORF7a29V29LGtaTta11B.1.351.20.000303
ORF7a29V29LGtaTta11B.1.36.100.004785
ORF7a29V29IGtaAta11B.1.36.190.009259
ORF7a29V29del2gTAg--11B.1.36.290.000517
ORF7a29V29LGtaTta11B.1.36.290.000517
ORF7a29V29LGtaTta11B.1.36.380.001642
ORF7a29V29VgtAgtG11B.1.36.80.001
ORF7a29V29AgTagCa11B.1.3610.001289
ORF7a29V29IGtaAta11B.1.3980.002976
ORF7a29V29IGtaAta11B.1.4230.010204
ORF7a29V29LGtaTta11B.1.4250.002994
ORF7a29V29delGTA---11B.1.4270.00005
ORF7a29V29del1gtAgt-11B.1.4290.000024
ORF7a29V29delGTA---11B.1.438.10.000107
ORF7a29V29IGtaAta11B.1.438.10.000107
ORF7a29V29LGtaTta11B.1.4560.003268
ORF7a29V29VgtAgtC11B.1.4560.003268
ORF7a29V29delGTA---11B.1.4590.004082
ORF7a29V29delGTA---11B.1.466.20.000391
ORF7a29V29delGTA---11B.1.4680.005714
ORF7a29V29delGTA---11B.1.4700.001404
ORF7a29V29LGtaTta11B.1.4990.00105
ORF7a29V29LGtaTta11B.1.5070.011236
ORF7a29V29LGtaTta11B.1.5250.000113
ORF7a29V29delGTA---11B.1.5250.000113
ORF7a29V29IGtaAta11B.1.5250.000113
ORF7a29V29IGtaAta11B.1.5260.000024
ORF7a29V29AgTagCa11B.1.5960.000087
ORF7a29V29delGTA---11B.1.5960.000087
ORF7a29V29LGtaTta11B.1.6090.000479
ORF7a29V29AgTagCa11B.1.6090.000479
ORF7a29V29del2gTAg--11B.1.617.20.000004
ORF7a29V29SGTAAGT11B.1.617.20.000004
ORF7a29V29delGTA---11B.1.617.30.002985
ORF7a29V29delGTA---11B.1.6200.000946
ORF7a29V29LGtaTta11B.1.6230.000536
ORF7a29V29LGtaTta11B.1.6250.002353
ORF7a29V29LGtaTta11B.1.6280.000352
ORF7a29V29delGTA---11B.1.6300.005236
ORF7a29V29delGTA---11B.1.6360.006711
ORF7a29V29IGtaAta11B.1.6370.000073
ORF7a29V29delGTA---11B.1.6370.000073
ORF7a29V29LGtaTta11B.1.9.40.006135
ORF7a29V29LGtaTta11B.60.00091
ORF7a29V29LGtaTta11C.360.000911
ORF7a29V29AgTagCa11C.36.30.000567
ORF7a29V29VgtAgtG11C.370.000116
ORF7a29V29LGtaTta11L.30.003546
ORF7a29V29IGtaAta11P.10.000016
ORF7a29V29LGtaTta11P.1.100.000269
ORF7a29V29AgTagCa11P.1.150.000232
ORF7a29V29EgTagAa11P.1.170.000162
ORF7a29V29AgTagCa11P.1.170.000162
ORF7a29V29LGtaTta11P.1.70.000319
ORF7a29V29delGTA---11Q.20.000613
ORF7a29V29delGTA---11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.