CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 24 | V24F | nonsyn | Gtt | Ttt | 9732 | 9732 | 1 | 27463-27465 | |
ORF7a | 24 | V24del | del | GTT | --- | 868 | 868 | 1 | 27463-27465 | |
ORF7a | 24 | V24I | nonsyn | Gtt | Att | 426 | 426 | 1 | 27463-27465 | |
ORF7a | 24 | V24L | nonsyn | Gtt | Ctt | 410 | 409 | 0.997561 | 27463-27465 | |
ORF7a | 24 | V24L | nonsyn | GtT | TtA | 410 | 1 | 0.00243902 | 27463-27465 | |
ORF7a | 24 | V24V | syn | gtT | gtC | 137 | 97 | 0.708029 | 27463-27465 | |
ORF7a | 24 | V24V | syn | gtT | gtA | 137 | 32 | 0.233577 | 27463-27465 | |
ORF7a | 24 | V24V | syn | gtT | gtG | 137 | 8 | 0.0583942 | 27463-27465 | |
ORF7a | 24 | V24A | nonsyn | gTt | gCt | 130 | 129 | 0.992308 | 27463-27465 | |
ORF7a | 24 | V24A | nonsyn | gTT | gCA | 130 | 1 | 0.00769231 | 27463-27465 | |
ORF7a | 24 | V24G | nonsyn | gTt | gGt | 21 | 21 | 1 | 27463-27465 | |
ORF7a | 24 | V24del1 | del | GtT | Ct- | 17 | 6 | 0.352941 | 27463-27465 | |
ORF7a | 24 | V24del1 | del | Gtt | -tt | 17 | 4 | 0.235294 | 27463-27465 | |
ORF7a | 24 | V24del1 | del | GTT | -NN | 17 | 3 | 0.176471 | 27463-27465 | |
ORF7a | 24 | V24del1 | del | gTt | g-t | 17 | 2 | 0.117647 | 27463-27465 | |
ORF7a | 24 | V24del1 | del | GTt | -Ct | 17 | 1 | 0.0588235 | 27463-27465 | |
ORF7a | 24 | V24del1 | del | GtT | -tA | 17 | 1 | 0.0588235 | 27463-27465 | |
ORF7a | 24 | V24del2 | del | gTT | g-- | 10 | 8 | 0.8 | 27463-27465 | |
ORF7a | 24 | V24del2 | del | GTt | --t | 10 | 2 | 0.2 | 27463-27465 | |
ORF7a | 24 | V24D | nonsyn | gTt | gAt | 4 | 4 | 1 | 27463-27465 | |
ORF7a | 24 | V24E | nonsyn | gTT | gAG | 1 | 1 | 1 | 27463-27465 | |
ORF7a | 24 | V24K | nonsyn | GTT | AAG | 1 | 1 | 1 | 27463-27465 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 24 | V24F | Gtt | Ttt | 9732 | 9732 | All | 0.001861 |
ORF7a | 24 | V24F | Gtt | Ttt | 2878 | 2878 | AY.4 | 0.004479 |
ORF7a | 24 | V24F | Gtt | Ttt | 1023 | 1023 | AY.5 | 0.021124 |
ORF7a | 24 | V24F | Gtt | Ttt | 971 | 971 | B.1.1.7 | 0.000869 |
ORF7a | 24 | V24del | GTT | --- | 868 | 868 | All | 0.000166 |
ORF7a | 24 | V24F | Gtt | Ttt | 687 | 687 | AY.66 | 0.734759 |
ORF7a | 24 | V24I | Gtt | Att | 426 | 426 | All | 0.000081 |
ORF7a | 24 | V24F | Gtt | Ttt | 421 | 421 | AY.44 | 0.002563 |
ORF7a | 24 | V24L | Gtt | Ctt | 409 | 410 | All | 0.000078 |
ORF7a | 24 | V24L | GtT | TtA | 1 | 410 | All | 0 |
ORF7a | 24 | V24F | Gtt | Ttt | 405 | 405 | B.1.617.2 | 0.001525 |
ORF7a | 24 | V24F | Gtt | Ttt | 370 | 370 | AY.43 | 0.001639 |
ORF7a | 24 | V24F | Gtt | Ttt | 345 | 345 | AY.46 | 0.035908 |
ORF7a | 24 | V24F | Gtt | Ttt | 337 | 337 | B.1.575 | 0.102245 |
ORF7a | 24 | V24F | Gtt | Ttt | 335 | 335 | AY.39 | 0.008278 |
ORF7a | 24 | V24del | GTT | --- | 248 | 248 | B.1.1.7 | 0.000222 |
ORF7a | 24 | V24F | Gtt | Ttt | 241 | 241 | AY.103 | 0.001496 |
ORF7a | 24 | V24del | GTT | --- | 179 | 179 | B.1.177.21 | 0.013688 |
ORF7a | 24 | V24F | Gtt | Ttt | 171 | 171 | B.1.177.63 | 0.462162 |
ORF7a | 24 | V24F | Gtt | Ttt | 149 | 149 | AY.25 | 0.000896 |
ORF7a | 24 | V24L | Gtt | Ctt | 147 | 147 | AY.47 | 0.004572 |
ORF7a | 24 | V24V | gtT | gtC | 97 | 137 | All | 0.000019 |
ORF7a | 24 | V24V | gtT | gtA | 32 | 137 | All | 0.000006 |
ORF7a | 24 | V24V | gtT | gtG | 8 | 137 | All | 0.000002 |
ORF7a | 24 | V24A | gTt | gCt | 129 | 130 | All | 0.000025 |
ORF7a | 24 | V24A | gTT | gCA | 1 | 130 | All | 0 |
ORF7a | 24 | V24del | GTT | --- | 127 | 127 | AY.4 | 0.000198 |
ORF7a | 24 | V24I | Gtt | Att | 110 | 110 | B.1.1.7 | 0.000098 |
ORF7a | 24 | V24L | Gtt | Ctt | 84 | 84 | B.1.526 | 0.001974 |
ORF7a | 24 | V24F | Gtt | Ttt | 82 | 82 | AY.102 | 0.002174 |
ORF7a | 24 | V24I | Gtt | Att | 82 | 82 | AY.103 | 0.000509 |
ORF7a | 24 | V24F | Gtt | Ttt | 58 | 58 | AY.3 | 0.000577 |
ORF7a | 24 | V24F | Gtt | Ttt | 56 | 56 | AY.34 | 0.00543 |
ORF7a | 24 | V24F | Gtt | Ttt | 55 | 55 | B.1.160.10 | 0.443548 |
ORF7a | 24 | V24F | Gtt | Ttt | 52 | 52 | AY.4.2.1 | 0.007747 |
ORF7a | 24 | V24I | Gtt | Att | 45 | 45 | B.1.617.2 | 0.000169 |
ORF7a | 24 | V24F | Gtt | Ttt | 44 | 44 | AY.20 | 0.00171 |
ORF7a | 24 | V24L | Gtt | Ctt | 44 | 44 | AY.7.2 | 0.024609 |
ORF7a | 24 | V24F | Gtt | Ttt | 44 | 44 | B.1.160 | 0.001372 |
ORF7a | 24 | V24F | Gtt | Ttt | 43 | 43 | AY.9.2 | 0.001579 |
ORF7a | 24 | V24L | Gtt | Ctt | 39 | 39 | B.1.416.1 | 0.060937 |
ORF7a | 24 | V24F | Gtt | Ttt | 35 | 35 | P.1 | 0.000551 |
ORF7a | 24 | V24F | Gtt | Ttt | 30 | 30 | AY.6 | 0.001234 |
ORF7a | 24 | V24F | Gtt | Ttt | 29 | 29 | B.1 | 0.000266 |
ORF7a | 24 | V24I | Gtt | Att | 28 | 28 | AY.4 | 0.000044 |
ORF7a | 24 | V24F | Gtt | Ttt | 28 | 28 | B.1.1.214 | 0.001553 |
ORF7a | 24 | V24A | gTt | gCt | 28 | 28 | B.1.1.7 | 0.000025 |
ORF7a | 24 | V24V | gtT | gtC | 26 | 28 | B.1.1.7 | 0.000023 |
ORF7a | 24 | V24V | gtT | gtA | 1 | 28 | B.1.1.7 | 0.000001 |
ORF7a | 24 | V24V | gtT | gtG | 1 | 28 | B.1.1.7 | 0.000001 |
ORF7a | 24 | V24F | Gtt | Ttt | 28 | 28 | B.1.177.60 | 0.006116 |
ORF7a | 24 | V24F | Gtt | Ttt | 27 | 27 | AY.26 | 0.000764 |
ORF7a | 24 | V24del | GTT | --- | 27 | 27 | AY.29 | 0.000426 |
ORF7a | 24 | V24F | Gtt | Ttt | 27 | 27 | B.1.221 | 0.001918 |
ORF7a | 24 | V24F | Gtt | Ttt | 26 | 26 | AY.42 | 0.001046 |
ORF7a | 24 | V24F | Gtt | Ttt | 25 | 25 | B.1.525 | 0.002829 |
ORF7a | 24 | V24F | Gtt | Ttt | 24 | 24 | B.1.177.35 | 0.016586 |
ORF7a | 24 | V24del | GTT | --- | 23 | 23 | AY.3 | 0.000229 |
ORF7a | 24 | V24F | Gtt | Ttt | 22 | 22 | B.1.2 | 0.000194 |
ORF7a | 24 | V24F | Gtt | Ttt | 22 | 22 | C.37 | 0.002553 |
ORF7a | 24 | V24L | Gtt | Ctt | 22 | 22 | P.1 | 0.000347 |
ORF7a | 24 | V24G | gTt | gGt | 21 | 21 | All | 0.000004 |
ORF7a | 24 | V24F | Gtt | Ttt | 20 | 20 | B.1.351 | 0.000595 |
ORF7a | 24 | V24I | Gtt | Att | 19 | 19 | AY.25 | 0.000114 |
ORF7a | 24 | V24F | Gtt | Ttt | 18 | 18 | AY.33 | 0.001202 |
ORF7a | 24 | V24del1 | GtT | Ct- | 6 | 17 | All | 0.000001 |
ORF7a | 24 | V24del1 | Gtt | -tt | 4 | 17 | All | 0.000001 |
ORF7a | 24 | V24del1 | GTT | -NN | 3 | 17 | All | 0.000001 |
ORF7a | 24 | V24del1 | gTt | g-t | 2 | 17 | All | 0 |
ORF7a | 24 | V24del1 | GTt | -Ct | 1 | 17 | All | 0 |
ORF7a | 24 | V24del1 | GtT | -tA | 1 | 17 | All | 0 |
ORF7a | 24 | V24F | Gtt | Ttt | 17 | 17 | B.1.177.62 | 0.020262 |
ORF7a | 24 | V24F | Gtt | Ttt | 17 | 17 | B.1.620 | 0.016083 |
ORF7a | 24 | V24del | GTT | --- | 16 | 16 | AY.25 | 0.000096 |
ORF7a | 24 | V24del | GTT | --- | 15 | 15 | AY.103 | 0.000093 |
ORF7a | 24 | V24F | Gtt | Ttt | 15 | 15 | B.1.177 | 0.000198 |
ORF7a | 24 | V24A | gTt | gCt | 15 | 15 | B.1.429 | 0.000353 |
ORF7a | 24 | V24F | Gtt | Ttt | 15 | 15 | P.1.1 | 0.004765 |
ORF7a | 24 | V24F | Gtt | Ttt | 14 | 14 | AY.120 | 0.000521 |
ORF7a | 24 | V24del | GTT | --- | 14 | 14 | AY.43 | 0.000062 |
ORF7a | 24 | V24L | Gtt | Ctt | 14 | 14 | B.1.177 | 0.000184 |
ORF7a | 24 | V24F | Gtt | Ttt | 14 | 14 | P.1.10 | 0.003773 |
ORF7a | 24 | V24A | gTt | gCt | 13 | 13 | B.1.2 | 0.000114 |
ORF7a | 24 | V24V | gtT | gtA | 11 | 12 | AY.103 | 0.000068 |
ORF7a | 24 | V24V | gtT | gtC | 1 | 12 | AY.103 | 0.000006 |
ORF7a | 24 | V24F | Gtt | Ttt | 12 | 12 | AY.113 | 0.001709 |
ORF7a | 24 | V24F | Gtt | Ttt | 12 | 12 | P.1.14 | 0.000574 |
ORF7a | 24 | V24F | Gtt | Ttt | 11 | 11 | AY.23 | 0.000767 |
ORF7a | 24 | V24F | Gtt | Ttt | 11 | 11 | AY.3.1 | 0.000938 |
ORF7a | 24 | V24G | gTt | gGt | 11 | 11 | AY.4 | 0.000017 |
ORF7a | 24 | V24I | Gtt | Att | 11 | 11 | AY.43 | 0.000049 |
ORF7a | 24 | V24del | GTT | --- | 11 | 11 | AY.44 | 0.000067 |
ORF7a | 24 | V24A | gTt | gCt | 11 | 11 | AY.46 | 0.001145 |
ORF7a | 24 | V24F | Gtt | Ttt | 11 | 11 | B.1.1 | 0.0002 |
ORF7a | 24 | V24V | gtT | gtC | 11 | 11 | B.1.177.62 | 0.013111 |
ORF7a | 24 | V24F | Gtt | Ttt | 11 | 11 | B.1.36.31 | 0.019264 |
ORF7a | 24 | V24F | Gtt | Ttt | 11 | 11 | B.1.429 | 0.000259 |
ORF7a | 24 | V24del | GTT | --- | 11 | 11 | B.1.617.2 | 0.000041 |
ORF7a | 24 | V24del2 | gTT | g-- | 8 | 10 | All | 0.000002 |
ORF7a | 24 | V24del2 | GTt | --t | 2 | 10 | All | 0 |
ORF7a | 24 | V24F | Gtt | Ttt | 10 | 10 | AY.120.1 | 0.00321 |
ORF7a | 24 | V24F | Gtt | Ttt | 10 | 10 | AY.29 | 0.000158 |
ORF7a | 24 | V24del | GTT | --- | 10 | 10 | AY.39 | 0.000247 |
ORF7a | 24 | V24V | gtT | gtG | 4 | 10 | AY.44 | 0.000024 |
ORF7a | 24 | V24V | gtT | gtC | 3 | 10 | AY.44 | 0.000018 |
ORF7a | 24 | V24V | gtT | gtA | 3 | 10 | AY.44 | 0.000018 |
ORF7a | 24 | V24del | GTT | --- | 10 | 10 | B.1 | 0.000092 |
ORF7a | 24 | V24del | GTT | --- | 10 | 10 | B.1.1.214 | 0.000555 |
ORF7a | 24 | V24F | Gtt | Ttt | 9 | 9 | AY.12 | 0.002845 |
ORF7a | 24 | V24del | GTT | --- | 9 | 9 | B.1.1.284 | 0.000967 |
ORF7a | 24 | V24F | Gtt | Ttt | 9 | 9 | B.1.595 | 0.002349 |
ORF7a | 24 | V24del | GTT | --- | 9 | 9 | C.8 | 0.040179 |
ORF7a | 24 | V24A | gTt | gCt | 8 | 8 | A.28 | 0.021164 |
ORF7a | 24 | V24F | Gtt | Ttt | 8 | 8 | AY.100 | 0.000368 |
ORF7a | 24 | V24I | Gtt | Att | 8 | 8 | AY.102 | 0.000212 |
ORF7a | 24 | V24I | Gtt | Att | 8 | 8 | AY.39 | 0.000198 |
ORF7a | 24 | V24F | Gtt | Ttt | 8 | 8 | AY.45 | 0.000973 |
ORF7a | 24 | V24F | Gtt | Ttt | 8 | 8 | AY.5.4 | 0.002214 |
ORF7a | 24 | V24F | Gtt | Ttt | 8 | 8 | AY.98 | 0.000632 |
ORF7a | 24 | V24L | Gtt | Ctt | 8 | 8 | B.1.1.7 | 0.000007 |
ORF7a | 24 | V24del | GTT | --- | 8 | 8 | B.1.2 | 0.00007 |
ORF7a | 24 | V24L | Gtt | Ctt | 8 | 8 | B.1.637 | 0.000585 |
ORF7a | 24 | V24A | gTt | gCt | 7 | 7 | AY.103 | 0.000043 |
ORF7a | 24 | V24F | Gtt | Ttt | 7 | 7 | AY.119 | 0.000247 |
ORF7a | 24 | V24F | Gtt | Ttt | 7 | 7 | AY.121 | 0.000947 |
ORF7a | 24 | V24F | Gtt | Ttt | 7 | 7 | AY.16.1 | 0.003289 |
ORF7a | 24 | V24I | Gtt | Att | 7 | 7 | AY.44 | 0.000043 |
ORF7a | 24 | V24F | Gtt | Ttt | 7 | 7 | AY.47 | 0.000218 |
ORF7a | 24 | V24F | Gtt | Ttt | 7 | 7 | AY.99.2 | 0.000645 |
ORF7a | 24 | V24F | Gtt | Ttt | 7 | 7 | AZ.3 | 0.010638 |
ORF7a | 24 | V24F | Gtt | Ttt | 7 | 7 | B.1.105 | 0.067308 |
ORF7a | 24 | V24F | Gtt | Ttt | 7 | 7 | B.1.398 | 0.020833 |
ORF7a | 24 | V24F | Gtt | Ttt | 7 | 7 | B.1.617.1 | 0.000903 |
ORF7a | 24 | V24del | GTT | --- | 7 | 7 | C.37 | 0.000812 |
ORF7a | 24 | V24del | GTT | --- | 7 | 7 | P.1 | 0.00011 |
ORF7a | 24 | V24I | Gtt | Att | 7 | 7 | P.1 | 0.00011 |
ORF7a | 24 | V24F | Gtt | Ttt | 7 | 7 | P.1.15 | 0.001626 |
ORF7a | 24 | V24F | Gtt | Ttt | 6 | 6 | AY.114 | 0.001387 |
ORF7a | 24 | V24A | gTt | gCt | 6 | 6 | AY.4 | 0.000009 |
ORF7a | 24 | V24del | GTT | --- | 6 | 6 | AY.47 | 0.000187 |
ORF7a | 24 | V24del1 | GtT | Ct- | 6 | 6 | AY.7.2 | 0.003356 |
ORF7a | 24 | V24I | Gtt | Att | 6 | 6 | B.1.1 | 0.000109 |
ORF7a | 24 | V24I | Gtt | Att | 6 | 6 | B.1.160 | 0.000187 |
ORF7a | 24 | V24F | Gtt | Ttt | 6 | 6 | B.1.453 | 0.019417 |
ORF7a | 24 | V24del | GTT | --- | 6 | 6 | B.1.526 | 0.000141 |
ORF7a | 24 | V24L | Gtt | Ctt | 6 | 6 | B.1.617.2 | 0.000023 |
ORF7a | 24 | V24I | Gtt | Att | 6 | 6 | D.2 | 0.00045 |
ORF7a | 24 | V24F | Gtt | Ttt | 6 | 6 | R.1 | 0.00054 |
ORF7a | 24 | V24L | Gtt | Ctt | 5 | 5 | AY.103 | 0.000031 |
ORF7a | 24 | V24F | Gtt | Ttt | 5 | 5 | AY.108 | 0.005513 |
ORF7a | 24 | V24del | GTT | --- | 5 | 5 | AY.118 | 0.000313 |
ORF7a | 24 | V24F | Gtt | Ttt | 5 | 5 | AY.16 | 0.001898 |
ORF7a | 24 | V24del | GTT | --- | 5 | 5 | AY.26 | 0.000142 |
ORF7a | 24 | V24I | Gtt | Att | 5 | 5 | AY.26 | 0.000142 |
ORF7a | 24 | V24I | Gtt | Att | 5 | 5 | AY.29 | 0.000079 |
ORF7a | 24 | V24L | Gtt | Ctt | 5 | 5 | B.1 | 0.000046 |
ORF7a | 24 | V24F | Gtt | Ttt | 5 | 5 | B.1.1.519 | 0.000199 |
ORF7a | 24 | V24F | Gtt | Ttt | 5 | 5 | B.1.160.30 | 0.014881 |
ORF7a | 24 | V24del | GTT | --- | 5 | 5 | B.1.177.44 | 0.002595 |
ORF7a | 24 | V24F | Gtt | Ttt | 5 | 5 | B.1.177.73 | 0.002831 |
ORF7a | 24 | V24V | gtT | gtC | 5 | 5 | B.1.2 | 0.000044 |
ORF7a | 24 | V24I | Gtt | Att | 5 | 5 | B.1.517 | 0.002135 |
ORF7a | 24 | V24F | Gtt | Ttt | 5 | 5 | B.1.526 | 0.000118 |
ORF7a | 24 | V24F | Gtt | Ttt | 5 | 5 | B.1.590 | 0.022727 |
ORF7a | 24 | V24V | gtT | gtC | 3 | 5 | B.1.617.2 | 0.000011 |
ORF7a | 24 | V24V | gtT | gtA | 2 | 5 | B.1.617.2 | 0.000008 |
ORF7a | 24 | V24F | Gtt | Ttt | 5 | 5 | B.1.621 | 0.000443 |
ORF7a | 24 | V24V | gtT | gtC | 5 | 5 | P.1 | 0.000079 |
ORF7a | 24 | V24F | Gtt | Ttt | 5 | 5 | P.1.7 | 0.001596 |
ORF7a | 24 | V24F | Gtt | Ttt | 5 | 5 | Q.8 | 0.000825 |
ORF7a | 24 | V24D | gTt | gAt | 4 | 4 | All | 0.000001 |
ORF7a | 24 | V24F | Gtt | Ttt | 4 | 4 | AY.111 | 0.000733 |
ORF7a | 24 | V24V | gtT | gtC | 3 | 4 | AY.118 | 0.000188 |
ORF7a | 24 | V24V | gtT | gtA | 1 | 4 | AY.118 | 0.000063 |
ORF7a | 24 | V24F | Gtt | Ttt | 4 | 4 | AY.120.2 | 0.005141 |
ORF7a | 24 | V24A | gTt | gCt | 4 | 4 | AY.3.1 | 0.000341 |
ORF7a | 24 | V24V | gtT | gtC | 4 | 4 | AY.32 | 0.00213 |
ORF7a | 24 | V24L | Gtt | Ctt | 4 | 4 | AY.33 | 0.000267 |
ORF7a | 24 | V24I | Gtt | Att | 4 | 4 | AY.39.1 | 0.000158 |
ORF7a | 24 | V24V | gtT | gtC | 4 | 4 | AY.4 | 0.000006 |
ORF7a | 24 | V24F | Gtt | Ttt | 4 | 4 | AY.62 | 0.001743 |
ORF7a | 24 | V24F | Gtt | Ttt | 4 | 4 | AY.68 | 0.001095 |
ORF7a | 24 | V24del | GTT | --- | 4 | 4 | AY.7.2 | 0.002237 |
ORF7a | 24 | V24F | Gtt | Ttt | 4 | 4 | AY.92 | 0.001149 |
ORF7a | 24 | V24F | Gtt | Ttt | 4 | 4 | AY.98.1 | 0.000194 |
ORF7a | 24 | V24del | GTT | --- | 4 | 4 | AY.98.1 | 0.000194 |
ORF7a | 24 | V24V | gtT | gtC | 4 | 4 | AY.98.1 | 0.000194 |
ORF7a | 24 | V24A | gTt | gCt | 4 | 4 | B.1 | 0.000037 |
ORF7a | 24 | V24V | gtT | gtC | 3 | 4 | B.1 | 0.000027 |
ORF7a | 24 | V24V | gtT | gtA | 1 | 4 | B.1 | 0.000009 |
ORF7a | 24 | V24F | Gtt | Ttt | 4 | 4 | B.1.1.318 | 0.001207 |
ORF7a | 24 | V24F | Gtt | Ttt | 4 | 4 | B.1.1.349 | 0.041237 |
ORF7a | 24 | V24F | Gtt | Ttt | 4 | 4 | B.1.1.37 | 0.000771 |
ORF7a | 24 | V24A | gTt | gCt | 4 | 4 | B.1.1.519 | 0.000159 |
ORF7a | 24 | V24G | gTt | gGt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF7a | 24 | V24A | gTt | gCt | 4 | 4 | B.1.160 | 0.000125 |
ORF7a | 24 | V24V | gtT | gtC | 4 | 4 | B.1.221 | 0.000284 |
ORF7a | 24 | V24F | Gtt | Ttt | 4 | 4 | B.1.346 | 0.005242 |
ORF7a | 24 | V24del | GTT | --- | 4 | 4 | B.1.351 | 0.000119 |
ORF7a | 24 | V24I | Gtt | Att | 4 | 4 | B.1.36 | 0.000584 |
ORF7a | 24 | V24F | Gtt | Ttt | 4 | 4 | B.1.367 | 0.00317 |
ORF7a | 24 | V24F | Gtt | Ttt | 4 | 4 | B.1.427 | 0.000202 |
ORF7a | 24 | V24del | GTT | --- | 4 | 4 | B.1.429 | 0.000094 |
ORF7a | 24 | V24F | Gtt | Ttt | 4 | 4 | B.1.588 | 0.00364 |
ORF7a | 24 | V24A | gTt | gCt | 4 | 4 | P.1 | 0.000063 |
ORF7a | 24 | V24del | GTT | --- | 4 | 4 | Q.8 | 0.00066 |
ORF7a | 24 | V24F | Gtt | Ttt | 3 | 3 | A.2.5.2 | 0.004717 |
ORF7a | 24 | V24del1 | GTT | -NN | 3 | 3 | AY.106 | 0.001005 |
ORF7a | 24 | V24F | Gtt | Ttt | 3 | 3 | AY.116 | 0.00086 |
ORF7a | 24 | V24F | Gtt | Ttt | 3 | 3 | AY.118 | 0.000188 |
ORF7a | 24 | V24I | Gtt | Att | 3 | 3 | AY.20 | 0.000117 |
ORF7a | 24 | V24V | gtT | gtC | 3 | 3 | AY.25 | 0.000018 |
ORF7a | 24 | V24I | Gtt | Att | 3 | 3 | AY.3 | 0.00003 |
ORF7a | 24 | V24A | gTt | gCt | 3 | 3 | AY.3 | 0.00003 |
ORF7a | 24 | V24del | GTT | --- | 3 | 3 | AY.3.1 | 0.000256 |
ORF7a | 24 | V24del | GTT | --- | 3 | 3 | AY.33 | 0.0002 |
ORF7a | 24 | V24F | Gtt | Ttt | 3 | 3 | AY.4.2 | 0.000065 |
ORF7a | 24 | V24V | gtT | gtC | 3 | 3 | AY.43 | 0.000013 |
ORF7a | 24 | V24I | Gtt | Att | 3 | 3 | AY.46 | 0.000312 |
ORF7a | 24 | V24F | Gtt | Ttt | 3 | 3 | AY.53 | 0.000863 |
ORF7a | 24 | V24F | Gtt | Ttt | 3 | 3 | AY.7.2 | 0.001678 |
ORF7a | 24 | V24F | Gtt | Ttt | 3 | 3 | AY.75.1 | 0.000541 |
ORF7a | 24 | V24I | Gtt | Att | 3 | 3 | B.1.177 | 0.00004 |
ORF7a | 24 | V24del | GTT | --- | 3 | 3 | B.1.234 | 0.000396 |
ORF7a | 24 | V24V | gtT | gtC | 2 | 3 | B.1.427 | 0.000101 |
ORF7a | 24 | V24V | gtT | gtG | 1 | 3 | B.1.427 | 0.00005 |
ORF7a | 24 | V24F | Gtt | Ttt | 3 | 3 | B.1.541 | 0.013274 |
ORF7a | 24 | V24A | gTt | gCt | 3 | 3 | B.1.617.2 | 0.000011 |
ORF7a | 24 | V24del | GTT | --- | 3 | 3 | B.1.626 | 0.017143 |
ORF7a | 24 | V24F | Gtt | Ttt | 3 | 3 | D.2 | 0.000225 |
ORF7a | 24 | V24F | Gtt | Ttt | 3 | 3 | P.1.12 | 0.001452 |
ORF7a | 24 | V24F | Gtt | Ttt | 3 | 3 | P.1.16 | 0.001122 |
ORF7a | 24 | V24I | Gtt | Att | 2 | 2 | 0.111111 | |
ORF7a | 24 | V24V | gtT | gtA | 2 | 2 | 0.111111 | |
ORF7a | 24 | V24F | Gtt | Ttt | 2 | 2 | A.2.5 | 0.000998 |
ORF7a | 24 | V24I | Gtt | Att | 2 | 2 | A.23.1 | 0.001408 |
ORF7a | 24 | V24del | GTT | --- | 2 | 2 | A.28 | 0.005291 |
ORF7a | 24 | V24I | Gtt | Att | 2 | 2 | AY.100 | 0.000092 |
ORF7a | 24 | V24del | GTT | --- | 2 | 2 | AY.100 | 0.000092 |
ORF7a | 24 | V24F | Gtt | Ttt | 2 | 2 | AY.11 | 0.002677 |
ORF7a | 24 | V24F | Gtt | Ttt | 2 | 2 | AY.110 | 0.000225 |
ORF7a | 24 | V24del | GTT | --- | 2 | 2 | AY.119 | 0.000071 |
ORF7a | 24 | V24F | Gtt | Ttt | 2 | 2 | AY.14 | 0.000176 |
ORF7a | 24 | V24del | GTT | --- | 2 | 2 | AY.20 | 0.000078 |
ORF7a | 24 | V24A | gTt | gCt | 2 | 2 | AY.25 | 0.000012 |
ORF7a | 24 | V24del | GTT | --- | 2 | 2 | AY.29.1 | 0.000441 |
ORF7a | 24 | V24F | Gtt | Ttt | 2 | 2 | AY.38 | 0.000999 |
ORF7a | 24 | V24L | Gtt | Ctt | 2 | 2 | AY.4 | 0.000003 |
ORF7a | 24 | V24I | Gtt | Att | 2 | 2 | AY.4.2 | 0.000043 |
ORF7a | 24 | V24F | Gtt | Ttt | 2 | 2 | AY.41 | 0.000588 |
ORF7a | 24 | V24del | GTT | --- | 2 | 2 | AY.42 | 0.00008 |
ORF7a | 24 | V24F | Gtt | Ttt | 2 | 2 | AY.48 | 0.00093 |
ORF7a | 24 | V24V | gtT | gtA | 1 | 2 | AY.5 | 0.000021 |
ORF7a | 24 | V24V | gtT | gtG | 1 | 2 | AY.5 | 0.000021 |
ORF7a | 24 | V24I | Gtt | Att | 2 | 2 | AY.53 | 0.000575 |
ORF7a | 24 | V24F | Gtt | Ttt | 2 | 2 | AY.55 | 0.001835 |
ORF7a | 24 | V24F | Gtt | Ttt | 2 | 2 | AY.61 | 0.00021 |
ORF7a | 24 | V24L | Gtt | Ctt | 2 | 2 | AY.62 | 0.000871 |
ORF7a | 24 | V24F | Gtt | Ttt | 2 | 2 | AY.67 | 0.000929 |
ORF7a | 24 | V24del | GTT | --- | 2 | 2 | AY.75 | 0.000112 |
ORF7a | 24 | V24F | Gtt | Ttt | 2 | 2 | AY.84 | 0.000875 |
ORF7a | 24 | V24F | Gtt | Ttt | 2 | 2 | AY.85 | 0.000854 |
ORF7a | 24 | V24F | Gtt | Ttt | 2 | 2 | AY.88 | 0.001768 |
ORF7a | 24 | V24del | GTT | --- | 2 | 2 | AY.9 | 0.000135 |
ORF7a | 24 | V24I | Gtt | Att | 2 | 2 | AY.92 | 0.000575 |
ORF7a | 24 | V24G | gTt | gGt | 2 | 2 | AY.99.2 | 0.000184 |
ORF7a | 24 | V24I | Gtt | Att | 2 | 2 | B.1 | 0.000018 |
ORF7a | 24 | V24del2 | gTT | g-- | 2 | 2 | B.1 | 0.000018 |
ORF7a | 24 | V24del | GTT | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF7a | 24 | V24V | gtT | gtC | 2 | 2 | B.1.1 | 0.000036 |
ORF7a | 24 | V24F | Gtt | Ttt | 2 | 2 | B.1.1.222 | 0.000408 |
ORF7a | 24 | V24A | gTt | gCt | 2 | 2 | B.1.1.279 | 0.002242 |
ORF7a | 24 | V24F | Gtt | Ttt | 2 | 2 | B.1.1.306 | 0.000877 |
ORF7a | 24 | V24F | Gtt | Ttt | 2 | 2 | B.1.1.33 | 0.000842 |
ORF7a | 24 | V24F | Gtt | Ttt | 2 | 2 | B.1.1.63 | 0.000772 |
ORF7a | 24 | V24del1 | Gtt | -tt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF7a | 24 | V24del2 | gTT | g-- | 1 | 2 | B.1.1.7 | 0.000001 |
ORF7a | 24 | V24del2 | GTt | --t | 1 | 2 | B.1.1.7 | 0.000001 |
ORF7a | 24 | V24F | Gtt | Ttt | 2 | 2 | B.1.1.70 | 0.000682 |
ORF7a | 24 | V24F | Gtt | Ttt | 2 | 2 | B.1.128 | 0.001271 |
ORF7a | 24 | V24del | GTT | --- | 2 | 2 | B.1.160 | 0.000062 |
ORF7a | 24 | V24I | Gtt | Att | 2 | 2 | B.1.177.60 | 0.000437 |
ORF7a | 24 | V24V | gtT | gtA | 2 | 2 | B.1.177.81 | 0.000379 |
ORF7a | 24 | V24del | GTT | --- | 2 | 2 | B.1.177.86 | 0.000367 |
ORF7a | 24 | V24F | Gtt | Ttt | 2 | 2 | B.1.199 | 0.008264 |
ORF7a | 24 | V24F | Gtt | Ttt | 2 | 2 | B.1.243 | 0.000139 |
ORF7a | 24 | V24del | GTT | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF7a | 24 | V24V | gtT | gtA | 2 | 2 | B.1.258 | 0.000133 |
ORF7a | 24 | V24del | GTT | --- | 2 | 2 | B.1.258.11 | 0.000793 |
ORF7a | 24 | V24I | Gtt | Att | 2 | 2 | B.1.320 | 0.002491 |
ORF7a | 24 | V24V | gtT | gtA | 2 | 2 | B.1.351.2 | 0.000605 |
ORF7a | 24 | V24del | GTT | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF7a | 24 | V24F | Gtt | Ttt | 2 | 2 | B.1.409 | 0.001563 |
ORF7a | 24 | V24F | Gtt | Ttt | 2 | 2 | B.1.466.2 | 0.000782 |
ORF7a | 24 | V24F | Gtt | Ttt | 2 | 2 | B.1.561 | 0.000794 |
ORF7a | 24 | V24del | GTT | --- | 2 | 2 | B.1.596 | 0.000174 |
ORF7a | 24 | V24G | gTt | gGt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF7a | 24 | V24del1 | gTt | g-t | 2 | 2 | B.1.627 | 0.00404 |
ORF7a | 24 | V24del | GTT | --- | 2 | 2 | B.1.637 | 0.000146 |
ORF7a | 24 | V24F | Gtt | Ttt | 2 | 2 | C.36.3 | 0.001134 |
ORF7a | 24 | V24F | Gtt | Ttt | 2 | 2 | P.1.17.1 | 0.00175 |
ORF7a | 24 | V24F | Gtt | Ttt | 2 | 2 | P.1.2 | 0.002312 |
ORF7a | 24 | V24F | Gtt | Ttt | 2 | 2 | P.2 | 0.000373 |
ORF7a | 24 | V24F | Gtt | Ttt | 2 | 2 | Y.1 | 0.025641 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | A | 0.000387 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | A | 0.000387 |
ORF7a | 24 | V24A | gTt | gCt | 1 | 1 | A.1 | 0.000282 |
ORF7a | 24 | V24D | gTt | gAt | 1 | 1 | A.1 | 0.000282 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | A.23 | 0.010526 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | A.29 | 0.005319 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AE.1 | 0.011364 |
ORF7a | 24 | V24del1 | Gtt | -tt | 1 | 1 | AK.1 | 0.012658 |
ORF7a | 24 | V24E | gTT | gAG | 1 | 1 | All | 0 |
ORF7a | 24 | V24K | GTT | AAG | 1 | 1 | All | 0 |
ORF7a | 24 | V24L | Gtt | Ctt | 1 | 1 | AY.100 | 0.000046 |
ORF7a | 24 | V24L | Gtt | Ctt | 1 | 1 | AY.102 | 0.000027 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | AY.109 | 0.00074 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | AY.116 | 0.000287 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.117 | 0.000085 |
ORF7a | 24 | V24V | gtT | gtC | 1 | 1 | AY.117 | 0.000085 |
ORF7a | 24 | V24V | gtT | gtA | 1 | 1 | AY.119 | 0.000035 |
ORF7a | 24 | V24L | GtT | TtA | 1 | 1 | AY.119 | 0.000035 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | AY.119 | 0.000035 |
ORF7a | 24 | V24L | Gtt | Ctt | 1 | 1 | AY.120 | 0.000037 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF7a | 24 | V24E | gTT | gAG | 1 | 1 | AY.120.1 | 0.000321 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | AY.120.1 | 0.000321 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | AY.121 | 0.000135 |
ORF7a | 24 | V24A | gTt | gCt | 1 | 1 | AY.121 | 0.000135 |
ORF7a | 24 | V24L | Gtt | Ctt | 1 | 1 | AY.16.1 | 0.00047 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | AY.19 | 0.00114 |
ORF7a | 24 | V24V | gtT | gtC | 1 | 1 | AY.20 | 0.000039 |
ORF7a | 24 | V24del2 | gTT | g-- | 1 | 1 | AY.25 | 0.000006 |
ORF7a | 24 | V24D | gTt | gAt | 1 | 1 | AY.25 | 0.000006 |
ORF7a | 24 | V24L | Gtt | Ctt | 1 | 1 | AY.25 | 0.000006 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.27 | 0.000065 |
ORF7a | 24 | V24V | gtT | gtA | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 24 | V24V | gtT | gtC | 1 | 1 | AY.3 | 0.00001 |
ORF7a | 24 | V24V | gtT | gtC | 1 | 1 | AY.3.1 | 0.000085 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | AY.30 | 0.000396 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.32 | 0.000532 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | AY.34 | 0.000097 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.35 | 0.000233 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.37 | 0.000316 |
ORF7a | 24 | V24V | gtT | gtC | 1 | 1 | AY.39 | 0.000025 |
ORF7a | 24 | V24del2 | gTT | g-- | 1 | 1 | AY.39.1 | 0.00004 |
ORF7a | 24 | V24del2 | gTT | g-- | 1 | 1 | AY.4 | 0.000002 |
ORF7a | 24 | V24A | gTt | gCt | 1 | 1 | AY.4.2 | 0.000022 |
ORF7a | 24 | V24V | gtT | gtC | 1 | 1 | AY.4.2 | 0.000022 |
ORF7a | 24 | V24L | Gtt | Ctt | 1 | 1 | AY.4.2 | 0.000022 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.4.3 | 0.000842 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.4.5 | 0.000107 |
ORF7a | 24 | V24A | gTt | gCt | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 24 | V24L | Gtt | Ctt | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 24 | V24K | GTT | AAG | 1 | 1 | AY.44 | 0.000006 |
ORF7a | 24 | V24del1 | GtT | -tA | 1 | 1 | AY.44 | 0.000006 |
ORF7a | 24 | V24L | Gtt | Ctt | 1 | 1 | AY.44 | 0.000006 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | AY.45 | 0.000122 |
ORF7a | 24 | V24V | gtT | gtC | 1 | 1 | AY.45 | 0.000122 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | AY.45 | 0.000122 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.46.3 | 0.000934 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.46.4 | 0.000165 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.46.5 | 0.000198 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | AY.47 | 0.000031 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | AY.5 | 0.000021 |
ORF7a | 24 | V24L | Gtt | Ctt | 1 | 1 | AY.5.3 | 0.000337 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.5.3 | 0.000337 |
ORF7a | 24 | V24A | gTT | gCA | 1 | 1 | AY.5.3 | 0.000337 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.50 | 0.000799 |
ORF7a | 24 | V24L | Gtt | Ctt | 1 | 1 | AY.53 | 0.000288 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | AY.54 | 0.000095 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | AY.55 | 0.000917 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | AY.57 | 0.000656 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.58 | 0.000907 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | AY.59 | 0.00053 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.59 | 0.00053 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.60 | 0.000938 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.63 | 0.000387 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.65 | 0.000533 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | AY.66 | 0.00107 |
ORF7a | 24 | V24L | Gtt | Ctt | 1 | 1 | AY.67 | 0.000464 |
ORF7a | 24 | V24D | gTt | gAt | 1 | 1 | AY.67 | 0.000464 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.69 | 0.000187 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.7 | 0.000196 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.70 | 0.000209 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.71 | 0.000475 |
ORF7a | 24 | V24L | Gtt | Ctt | 1 | 1 | AY.71 | 0.000475 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | AY.72 | 0.001361 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.73 | 0.000665 |
ORF7a | 24 | V24V | gtT | gtG | 1 | 1 | AY.74 | 0.000116 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.74 | 0.000116 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.75 | 0.000056 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | AY.79 | 0.001211 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.86 | 0.00083 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.87 | 0.000833 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.9 | 0.000068 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.90 | 0.000684 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | AY.91 | 0.00073 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | AY.94 | 0.000443 |
ORF7a | 24 | V24L | Gtt | Ctt | 1 | 1 | AY.94 | 0.000443 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | AY.95 | 0.000761 |
ORF7a | 24 | V24V | gtT | gtC | 1 | 1 | AY.98 | 0.000079 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | AY.98 | 0.000079 |
ORF7a | 24 | V24L | Gtt | Ctt | 1 | 1 | B | 0.000128 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B | 0.000128 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | B.1.1.117 | 0.009709 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | B.1.1.129 | 0.009174 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.1.133 | 0.008475 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | B.1.1.137 | 0.0125 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | B.1.1.14 | 0.017241 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.1.190 | 0.05 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | B.1.1.222 | 0.000204 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.1.234 | 0.012048 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.1.304 | 0.002809 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.1.305 | 0.003861 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.1.326 | 0.001761 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.1.348 | 0.000796 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.1.375 | 0.011905 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.1.376 | 0.005952 |
ORF7a | 24 | V24A | gTt | gCt | 1 | 1 | B.1.1.397 | 0.002252 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.1.397 | 0.002252 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | B.1.1.404 | 0.015873 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.1.420 | 0.001006 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | B.1.1.420 | 0.001006 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.1.448 | 0.002033 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | B.1.1.50 | 0.000679 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.1.50 | 0.000679 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.1.51 | 0.001718 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | B.1.1.522 | 0.017241 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | B.1.1.54 | 0.003021 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | B.1.115 | 0.021739 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.120 | 0.007692 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 24 | V24G | gTt | gGt | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.177.17 | 0.000821 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.177.23 | 0.003236 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.177.30 | 0.002513 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | B.1.177.63 | 0.002703 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.177.79 | 0.002342 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.177.82 | 0.000477 |
ORF7a | 24 | V24L | Gtt | Ctt | 1 | 1 | B.1.179 | 0.003759 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | B.1.214.2 | 0.0006 |
ORF7a | 24 | V24A | gTt | gCt | 1 | 1 | B.1.221 | 0.000071 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF7a | 24 | V24del2 | GTt | --t | 1 | 1 | B.1.234 | 0.000132 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.234 | 0.000132 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | B.1.240 | 0.000216 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.240 | 0.000216 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.241 | 0.000812 |
ORF7a | 24 | V24V | gtT | gtC | 1 | 1 | B.1.243 | 0.00007 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.258.3 | 0.001675 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | B.1.311 | 0.000275 |
ORF7a | 24 | V24L | Gtt | Ctt | 1 | 1 | B.1.311 | 0.000275 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.336 | 0.002439 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | B.1.351 | 0.00003 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.36 | 0.000146 |
ORF7a | 24 | V24V | gtT | gtC | 1 | 1 | B.1.36.1 | 0.00114 |
ORF7a | 24 | V24A | gTt | gCt | 1 | 1 | B.1.36.35 | 0.002604 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.361 | 0.001289 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.375 | 0.00082 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.395 | 0.007042 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF7a | 24 | V24A | gTt | gCt | 1 | 1 | B.1.427 | 0.00005 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.428 | 0.00102 |
ORF7a | 24 | V24L | Gtt | Ctt | 1 | 1 | B.1.429 | 0.000024 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | B.1.453 | 0.003236 |
ORF7a | 24 | V24V | gtT | gtA | 1 | 1 | B.1.459 | 0.004082 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | B.1.470 | 0.001404 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | B.1.503 | 0.002488 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF7a | 24 | V24G | gTt | gGt | 1 | 1 | B.1.526 | 0.000024 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.551 | 0.00129 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.560 | 0.00463 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.568 | 0.001111 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.582 | 0.000491 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.609 | 0.000479 |
ORF7a | 24 | V24L | Gtt | Ctt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 24 | V24del2 | gTT | g-- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 24 | V24del1 | GTt | -Ct | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.617.3 | 0.002985 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | B.1.628 | 0.000352 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.1.637 | 0.000073 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | B.6 | 0.00091 |
ORF7a | 24 | V24D | gTt | gAt | 1 | 1 | B.61 | 0.005747 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | C.1 | 0.002392 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | C.12 | 0.007194 |
ORF7a | 24 | V24V | gtT | gtA | 1 | 1 | C.14 | 0.004329 |
ORF7a | 24 | V24V | gtT | gtC | 1 | 1 | C.26 | 0.007353 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | C.36 | 0.000911 |
ORF7a | 24 | V24del | GTT | --- | 1 | 1 | C.36.3 | 0.000567 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | C.37.1 | 0.002618 |
ORF7a | 24 | V24A | gTt | gCt | 1 | 1 | D.2 | 0.000075 |
ORF7a | 24 | V24A | gTt | gCt | 1 | 1 | N.5 | 0.001767 |
ORF7a | 24 | V24del2 | gTT | g-- | 1 | 1 | P.1 | 0.000016 |
ORF7a | 24 | V24I | Gtt | Att | 1 | 1 | P.1.12 | 0.000484 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | P.1.17 | 0.000162 |
ORF7a | 24 | V24del1 | Gtt | -tt | 1 | 1 | P.2 | 0.000187 |
ORF7a | 24 | V24F | Gtt | Ttt | 1 | 1 | Q.3 | 0.000145 |
ORF7a | 24 | V24A | gTt | gCt | 1 | 1 | Q.3 | 0.000145 |
ORF7a | 24 | V24L | Gtt | Ctt | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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