CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 24

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a24V24FnonsynGttTtt97329732127463-27465
ORF7a24V24deldelGTT---868868127463-27465
ORF7a24V24InonsynGttAtt426426127463-27465
ORF7a24V24LnonsynGttCtt4104090.99756127463-27465
ORF7a24V24LnonsynGtTTtA41010.0024390227463-27465
ORF7a24V24VsyngtTgtC137970.70802927463-27465
ORF7a24V24VsyngtTgtA137320.23357727463-27465
ORF7a24V24VsyngtTgtG13780.058394227463-27465
ORF7a24V24AnonsyngTtgCt1301290.99230827463-27465
ORF7a24V24AnonsyngTTgCA13010.0076923127463-27465
ORF7a24V24GnonsyngTtgGt2121127463-27465
ORF7a24V24del1delGtTCt-1760.35294127463-27465
ORF7a24V24del1delGtt-tt1740.23529427463-27465
ORF7a24V24del1delGTT-NN1730.17647127463-27465
ORF7a24V24del1delgTtg-t1720.11764727463-27465
ORF7a24V24del1delGTt-Ct1710.058823527463-27465
ORF7a24V24del1delGtT-tA1710.058823527463-27465
ORF7a24V24del2delgTTg--1080.827463-27465
ORF7a24V24del2delGTt--t1020.227463-27465
ORF7a24V24DnonsyngTtgAt44127463-27465
ORF7a24V24EnonsyngTTgAG11127463-27465
ORF7a24V24KnonsynGTTAAG11127463-27465

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a24V24FGttTtt97329732All0.001861
ORF7a24V24FGttTtt28782878AY.40.004479
ORF7a24V24FGttTtt10231023AY.50.021124
ORF7a24V24FGttTtt971971B.1.1.70.000869
ORF7a24V24delGTT---868868All0.000166
ORF7a24V24FGttTtt687687AY.660.734759
ORF7a24V24IGttAtt426426All0.000081
ORF7a24V24FGttTtt421421AY.440.002563
ORF7a24V24LGttCtt409410All0.000078
ORF7a24V24LGtTTtA1410All0
ORF7a24V24FGttTtt405405B.1.617.20.001525
ORF7a24V24FGttTtt370370AY.430.001639
ORF7a24V24FGttTtt345345AY.460.035908
ORF7a24V24FGttTtt337337B.1.5750.102245
ORF7a24V24FGttTtt335335AY.390.008278
ORF7a24V24delGTT---248248B.1.1.70.000222
ORF7a24V24FGttTtt241241AY.1030.001496
ORF7a24V24delGTT---179179B.1.177.210.013688
ORF7a24V24FGttTtt171171B.1.177.630.462162
ORF7a24V24FGttTtt149149AY.250.000896
ORF7a24V24LGttCtt147147AY.470.004572
ORF7a24V24VgtTgtC97137All0.000019
ORF7a24V24VgtTgtA32137All0.000006
ORF7a24V24VgtTgtG8137All0.000002
ORF7a24V24AgTtgCt129130All0.000025
ORF7a24V24AgTTgCA1130All0
ORF7a24V24delGTT---127127AY.40.000198
ORF7a24V24IGttAtt110110B.1.1.70.000098
ORF7a24V24LGttCtt8484B.1.5260.001974
ORF7a24V24FGttTtt8282AY.1020.002174
ORF7a24V24IGttAtt8282AY.1030.000509
ORF7a24V24FGttTtt5858AY.30.000577
ORF7a24V24FGttTtt5656AY.340.00543
ORF7a24V24FGttTtt5555B.1.160.100.443548
ORF7a24V24FGttTtt5252AY.4.2.10.007747
ORF7a24V24IGttAtt4545B.1.617.20.000169
ORF7a24V24FGttTtt4444AY.200.00171
ORF7a24V24LGttCtt4444AY.7.20.024609
ORF7a24V24FGttTtt4444B.1.1600.001372
ORF7a24V24FGttTtt4343AY.9.20.001579
ORF7a24V24LGttCtt3939B.1.416.10.060937
ORF7a24V24FGttTtt3535P.10.000551
ORF7a24V24FGttTtt3030AY.60.001234
ORF7a24V24FGttTtt2929B.10.000266
ORF7a24V24IGttAtt2828AY.40.000044
ORF7a24V24FGttTtt2828B.1.1.2140.001553
ORF7a24V24AgTtgCt2828B.1.1.70.000025
ORF7a24V24VgtTgtC2628B.1.1.70.000023
ORF7a24V24VgtTgtA128B.1.1.70.000001
ORF7a24V24VgtTgtG128B.1.1.70.000001
ORF7a24V24FGttTtt2828B.1.177.600.006116
ORF7a24V24FGttTtt2727AY.260.000764
ORF7a24V24delGTT---2727AY.290.000426
ORF7a24V24FGttTtt2727B.1.2210.001918
ORF7a24V24FGttTtt2626AY.420.001046
ORF7a24V24FGttTtt2525B.1.5250.002829
ORF7a24V24FGttTtt2424B.1.177.350.016586
ORF7a24V24delGTT---2323AY.30.000229
ORF7a24V24FGttTtt2222B.1.20.000194
ORF7a24V24FGttTtt2222C.370.002553
ORF7a24V24LGttCtt2222P.10.000347
ORF7a24V24GgTtgGt2121All0.000004
ORF7a24V24FGttTtt2020B.1.3510.000595
ORF7a24V24IGttAtt1919AY.250.000114
ORF7a24V24FGttTtt1818AY.330.001202
ORF7a24V24del1GtTCt-617All0.000001
ORF7a24V24del1Gtt-tt417All0.000001
ORF7a24V24del1GTT-NN317All0.000001
ORF7a24V24del1gTtg-t217All0
ORF7a24V24del1GTt-Ct117All0
ORF7a24V24del1GtT-tA117All0
ORF7a24V24FGttTtt1717B.1.177.620.020262
ORF7a24V24FGttTtt1717B.1.6200.016083
ORF7a24V24delGTT---1616AY.250.000096
ORF7a24V24delGTT---1515AY.1030.000093
ORF7a24V24FGttTtt1515B.1.1770.000198
ORF7a24V24AgTtgCt1515B.1.4290.000353
ORF7a24V24FGttTtt1515P.1.10.004765
ORF7a24V24FGttTtt1414AY.1200.000521
ORF7a24V24delGTT---1414AY.430.000062
ORF7a24V24LGttCtt1414B.1.1770.000184
ORF7a24V24FGttTtt1414P.1.100.003773
ORF7a24V24AgTtgCt1313B.1.20.000114
ORF7a24V24VgtTgtA1112AY.1030.000068
ORF7a24V24VgtTgtC112AY.1030.000006
ORF7a24V24FGttTtt1212AY.1130.001709
ORF7a24V24FGttTtt1212P.1.140.000574
ORF7a24V24FGttTtt1111AY.230.000767
ORF7a24V24FGttTtt1111AY.3.10.000938
ORF7a24V24GgTtgGt1111AY.40.000017
ORF7a24V24IGttAtt1111AY.430.000049
ORF7a24V24delGTT---1111AY.440.000067
ORF7a24V24AgTtgCt1111AY.460.001145
ORF7a24V24FGttTtt1111B.1.10.0002
ORF7a24V24VgtTgtC1111B.1.177.620.013111
ORF7a24V24FGttTtt1111B.1.36.310.019264
ORF7a24V24FGttTtt1111B.1.4290.000259
ORF7a24V24delGTT---1111B.1.617.20.000041
ORF7a24V24del2gTTg--810All0.000002
ORF7a24V24del2GTt--t210All0
ORF7a24V24FGttTtt1010AY.120.10.00321
ORF7a24V24FGttTtt1010AY.290.000158
ORF7a24V24delGTT---1010AY.390.000247
ORF7a24V24VgtTgtG410AY.440.000024
ORF7a24V24VgtTgtC310AY.440.000018
ORF7a24V24VgtTgtA310AY.440.000018
ORF7a24V24delGTT---1010B.10.000092
ORF7a24V24delGTT---1010B.1.1.2140.000555
ORF7a24V24FGttTtt99AY.120.002845
ORF7a24V24delGTT---99B.1.1.2840.000967
ORF7a24V24FGttTtt99B.1.5950.002349
ORF7a24V24delGTT---99C.80.040179
ORF7a24V24AgTtgCt88A.280.021164
ORF7a24V24FGttTtt88AY.1000.000368
ORF7a24V24IGttAtt88AY.1020.000212
ORF7a24V24IGttAtt88AY.390.000198
ORF7a24V24FGttTtt88AY.450.000973
ORF7a24V24FGttTtt88AY.5.40.002214
ORF7a24V24FGttTtt88AY.980.000632
ORF7a24V24LGttCtt88B.1.1.70.000007
ORF7a24V24delGTT---88B.1.20.00007
ORF7a24V24LGttCtt88B.1.6370.000585
ORF7a24V24AgTtgCt77AY.1030.000043
ORF7a24V24FGttTtt77AY.1190.000247
ORF7a24V24FGttTtt77AY.1210.000947
ORF7a24V24FGttTtt77AY.16.10.003289
ORF7a24V24IGttAtt77AY.440.000043
ORF7a24V24FGttTtt77AY.470.000218
ORF7a24V24FGttTtt77AY.99.20.000645
ORF7a24V24FGttTtt77AZ.30.010638
ORF7a24V24FGttTtt77B.1.1050.067308
ORF7a24V24FGttTtt77B.1.3980.020833
ORF7a24V24FGttTtt77B.1.617.10.000903
ORF7a24V24delGTT---77C.370.000812
ORF7a24V24delGTT---77P.10.00011
ORF7a24V24IGttAtt77P.10.00011
ORF7a24V24FGttTtt77P.1.150.001626
ORF7a24V24FGttTtt66AY.1140.001387
ORF7a24V24AgTtgCt66AY.40.000009
ORF7a24V24delGTT---66AY.470.000187
ORF7a24V24del1GtTCt-66AY.7.20.003356
ORF7a24V24IGttAtt66B.1.10.000109
ORF7a24V24IGttAtt66B.1.1600.000187
ORF7a24V24FGttTtt66B.1.4530.019417
ORF7a24V24delGTT---66B.1.5260.000141
ORF7a24V24LGttCtt66B.1.617.20.000023
ORF7a24V24IGttAtt66D.20.00045
ORF7a24V24FGttTtt66R.10.00054
ORF7a24V24LGttCtt55AY.1030.000031
ORF7a24V24FGttTtt55AY.1080.005513
ORF7a24V24delGTT---55AY.1180.000313
ORF7a24V24FGttTtt55AY.160.001898
ORF7a24V24delGTT---55AY.260.000142
ORF7a24V24IGttAtt55AY.260.000142
ORF7a24V24IGttAtt55AY.290.000079
ORF7a24V24LGttCtt55B.10.000046
ORF7a24V24FGttTtt55B.1.1.5190.000199
ORF7a24V24FGttTtt55B.1.160.300.014881
ORF7a24V24delGTT---55B.1.177.440.002595
ORF7a24V24FGttTtt55B.1.177.730.002831
ORF7a24V24VgtTgtC55B.1.20.000044
ORF7a24V24IGttAtt55B.1.5170.002135
ORF7a24V24FGttTtt55B.1.5260.000118
ORF7a24V24FGttTtt55B.1.5900.022727
ORF7a24V24VgtTgtC35B.1.617.20.000011
ORF7a24V24VgtTgtA25B.1.617.20.000008
ORF7a24V24FGttTtt55B.1.6210.000443
ORF7a24V24VgtTgtC55P.10.000079
ORF7a24V24FGttTtt55P.1.70.001596
ORF7a24V24FGttTtt55Q.80.000825
ORF7a24V24DgTtgAt44All0.000001
ORF7a24V24FGttTtt44AY.1110.000733
ORF7a24V24VgtTgtC34AY.1180.000188
ORF7a24V24VgtTgtA14AY.1180.000063
ORF7a24V24FGttTtt44AY.120.20.005141
ORF7a24V24AgTtgCt44AY.3.10.000341
ORF7a24V24VgtTgtC44AY.320.00213
ORF7a24V24LGttCtt44AY.330.000267
ORF7a24V24IGttAtt44AY.39.10.000158
ORF7a24V24VgtTgtC44AY.40.000006
ORF7a24V24FGttTtt44AY.620.001743
ORF7a24V24FGttTtt44AY.680.001095
ORF7a24V24delGTT---44AY.7.20.002237
ORF7a24V24FGttTtt44AY.920.001149
ORF7a24V24FGttTtt44AY.98.10.000194
ORF7a24V24delGTT---44AY.98.10.000194
ORF7a24V24VgtTgtC44AY.98.10.000194
ORF7a24V24AgTtgCt44B.10.000037
ORF7a24V24VgtTgtC34B.10.000027
ORF7a24V24VgtTgtA14B.10.000009
ORF7a24V24FGttTtt44B.1.1.3180.001207
ORF7a24V24FGttTtt44B.1.1.3490.041237
ORF7a24V24FGttTtt44B.1.1.370.000771
ORF7a24V24AgTtgCt44B.1.1.5190.000159
ORF7a24V24GgTtgGt44B.1.1.70.000004
ORF7a24V24AgTtgCt44B.1.1600.000125
ORF7a24V24VgtTgtC44B.1.2210.000284
ORF7a24V24FGttTtt44B.1.3460.005242
ORF7a24V24delGTT---44B.1.3510.000119
ORF7a24V24IGttAtt44B.1.360.000584
ORF7a24V24FGttTtt44B.1.3670.00317
ORF7a24V24FGttTtt44B.1.4270.000202
ORF7a24V24delGTT---44B.1.4290.000094
ORF7a24V24FGttTtt44B.1.5880.00364
ORF7a24V24AgTtgCt44P.10.000063
ORF7a24V24delGTT---44Q.80.00066
ORF7a24V24FGttTtt33A.2.5.20.004717
ORF7a24V24del1GTT-NN33AY.1060.001005
ORF7a24V24FGttTtt33AY.1160.00086
ORF7a24V24FGttTtt33AY.1180.000188
ORF7a24V24IGttAtt33AY.200.000117
ORF7a24V24VgtTgtC33AY.250.000018
ORF7a24V24IGttAtt33AY.30.00003
ORF7a24V24AgTtgCt33AY.30.00003
ORF7a24V24delGTT---33AY.3.10.000256
ORF7a24V24delGTT---33AY.330.0002
ORF7a24V24FGttTtt33AY.4.20.000065
ORF7a24V24VgtTgtC33AY.430.000013
ORF7a24V24IGttAtt33AY.460.000312
ORF7a24V24FGttTtt33AY.530.000863
ORF7a24V24FGttTtt33AY.7.20.001678
ORF7a24V24FGttTtt33AY.75.10.000541
ORF7a24V24IGttAtt33B.1.1770.00004
ORF7a24V24delGTT---33B.1.2340.000396
ORF7a24V24VgtTgtC23B.1.4270.000101
ORF7a24V24VgtTgtG13B.1.4270.00005
ORF7a24V24FGttTtt33B.1.5410.013274
ORF7a24V24AgTtgCt33B.1.617.20.000011
ORF7a24V24delGTT---33B.1.6260.017143
ORF7a24V24FGttTtt33D.20.000225
ORF7a24V24FGttTtt33P.1.120.001452
ORF7a24V24FGttTtt33P.1.160.001122
ORF7a24V24IGttAtt220.111111
ORF7a24V24VgtTgtA220.111111
ORF7a24V24FGttTtt22A.2.50.000998
ORF7a24V24IGttAtt22A.23.10.001408
ORF7a24V24delGTT---22A.280.005291
ORF7a24V24IGttAtt22AY.1000.000092
ORF7a24V24delGTT---22AY.1000.000092
ORF7a24V24FGttTtt22AY.110.002677
ORF7a24V24FGttTtt22AY.1100.000225
ORF7a24V24delGTT---22AY.1190.000071
ORF7a24V24FGttTtt22AY.140.000176
ORF7a24V24delGTT---22AY.200.000078
ORF7a24V24AgTtgCt22AY.250.000012
ORF7a24V24delGTT---22AY.29.10.000441
ORF7a24V24FGttTtt22AY.380.000999
ORF7a24V24LGttCtt22AY.40.000003
ORF7a24V24IGttAtt22AY.4.20.000043
ORF7a24V24FGttTtt22AY.410.000588
ORF7a24V24delGTT---22AY.420.00008
ORF7a24V24FGttTtt22AY.480.00093
ORF7a24V24VgtTgtA12AY.50.000021
ORF7a24V24VgtTgtG12AY.50.000021
ORF7a24V24IGttAtt22AY.530.000575
ORF7a24V24FGttTtt22AY.550.001835
ORF7a24V24FGttTtt22AY.610.00021
ORF7a24V24LGttCtt22AY.620.000871
ORF7a24V24FGttTtt22AY.670.000929
ORF7a24V24delGTT---22AY.750.000112
ORF7a24V24FGttTtt22AY.840.000875
ORF7a24V24FGttTtt22AY.850.000854
ORF7a24V24FGttTtt22AY.880.001768
ORF7a24V24delGTT---22AY.90.000135
ORF7a24V24IGttAtt22AY.920.000575
ORF7a24V24GgTtgGt22AY.99.20.000184
ORF7a24V24IGttAtt22B.10.000018
ORF7a24V24del2gTTg--22B.10.000018
ORF7a24V24delGTT---22B.1.10.000036
ORF7a24V24VgtTgtC22B.1.10.000036
ORF7a24V24FGttTtt22B.1.1.2220.000408
ORF7a24V24AgTtgCt22B.1.1.2790.002242
ORF7a24V24FGttTtt22B.1.1.3060.000877
ORF7a24V24FGttTtt22B.1.1.330.000842
ORF7a24V24FGttTtt22B.1.1.630.000772
ORF7a24V24del1Gtt-tt22B.1.1.70.000002
ORF7a24V24del2gTTg--12B.1.1.70.000001
ORF7a24V24del2GTt--t12B.1.1.70.000001
ORF7a24V24FGttTtt22B.1.1.700.000682
ORF7a24V24FGttTtt22B.1.1280.001271
ORF7a24V24delGTT---22B.1.1600.000062
ORF7a24V24IGttAtt22B.1.177.600.000437
ORF7a24V24VgtTgtA22B.1.177.810.000379
ORF7a24V24delGTT---22B.1.177.860.000367
ORF7a24V24FGttTtt22B.1.1990.008264
ORF7a24V24FGttTtt22B.1.2430.000139
ORF7a24V24delGTT---22B.1.2580.000133
ORF7a24V24VgtTgtA22B.1.2580.000133
ORF7a24V24delGTT---22B.1.258.110.000793
ORF7a24V24IGttAtt22B.1.3200.002491
ORF7a24V24VgtTgtA22B.1.351.20.000605
ORF7a24V24delGTT---22B.1.360.000292
ORF7a24V24FGttTtt22B.1.4090.001563
ORF7a24V24FGttTtt22B.1.466.20.000782
ORF7a24V24FGttTtt22B.1.5610.000794
ORF7a24V24delGTT---22B.1.5960.000174
ORF7a24V24GgTtgGt22B.1.617.20.000008
ORF7a24V24del1gTtg-t22B.1.6270.00404
ORF7a24V24delGTT---22B.1.6370.000146
ORF7a24V24FGttTtt22C.36.30.001134
ORF7a24V24FGttTtt22P.1.17.10.00175
ORF7a24V24FGttTtt22P.1.20.002312
ORF7a24V24FGttTtt22P.20.000373
ORF7a24V24FGttTtt22Y.10.025641
ORF7a24V24delGTT---11A0.000387
ORF7a24V24FGttTtt11A0.000387
ORF7a24V24AgTtgCt11A.10.000282
ORF7a24V24DgTtgAt11A.10.000282
ORF7a24V24FGttTtt11A.230.010526
ORF7a24V24IGttAtt11A.290.005319
ORF7a24V24FGttTtt11AE.10.011364
ORF7a24V24del1Gtt-tt11AK.10.012658
ORF7a24V24EgTTgAG11All0
ORF7a24V24KGTTAAG11All0
ORF7a24V24LGttCtt11AY.1000.000046
ORF7a24V24LGttCtt11AY.1020.000027
ORF7a24V24delGTT---11AY.1080.001103
ORF7a24V24delGTT---11AY.1090.00074
ORF7a24V24IGttAtt11AY.1160.000287
ORF7a24V24FGttTtt11AY.1170.000085
ORF7a24V24VgtTgtC11AY.1170.000085
ORF7a24V24VgtTgtA11AY.1190.000035
ORF7a24V24LGtTTtA11AY.1190.000035
ORF7a24V24IGttAtt11AY.1190.000035
ORF7a24V24LGttCtt11AY.1200.000037
ORF7a24V24delGTT---11AY.1200.000037
ORF7a24V24EgTTgAG11AY.120.10.000321
ORF7a24V24delGTT---11AY.120.10.000321
ORF7a24V24delGTT---11AY.1210.000135
ORF7a24V24AgTtgCt11AY.1210.000135
ORF7a24V24LGttCtt11AY.16.10.00047
ORF7a24V24delGTT---11AY.190.00114
ORF7a24V24VgtTgtC11AY.200.000039
ORF7a24V24del2gTTg--11AY.250.000006
ORF7a24V24DgTtgAt11AY.250.000006
ORF7a24V24LGttCtt11AY.250.000006
ORF7a24V24FGttTtt11AY.270.000065
ORF7a24V24VgtTgtA11AY.290.000016
ORF7a24V24VgtTgtC11AY.30.00001
ORF7a24V24VgtTgtC11AY.3.10.000085
ORF7a24V24IGttAtt11AY.300.000396
ORF7a24V24FGttTtt11AY.320.000532
ORF7a24V24delGTT---11AY.340.000097
ORF7a24V24FGttTtt11AY.350.000233
ORF7a24V24FGttTtt11AY.370.000316
ORF7a24V24VgtTgtC11AY.390.000025
ORF7a24V24del2gTTg--11AY.39.10.00004
ORF7a24V24del2gTTg--11AY.40.000002
ORF7a24V24AgTtgCt11AY.4.20.000022
ORF7a24V24VgtTgtC11AY.4.20.000022
ORF7a24V24LGttCtt11AY.4.20.000022
ORF7a24V24delGTT---11AY.4.20.000022
ORF7a24V24IGttAtt11AY.4.2.10.000149
ORF7a24V24FGttTtt11AY.4.30.000842
ORF7a24V24FGttTtt11AY.4.50.000107
ORF7a24V24AgTtgCt11AY.430.000004
ORF7a24V24LGttCtt11AY.430.000004
ORF7a24V24KGTTAAG11AY.440.000006
ORF7a24V24del1GtT-tA11AY.440.000006
ORF7a24V24LGttCtt11AY.440.000006
ORF7a24V24delGTT---11AY.450.000122
ORF7a24V24VgtTgtC11AY.450.000122
ORF7a24V24IGttAtt11AY.450.000122
ORF7a24V24FGttTtt11AY.46.30.000934
ORF7a24V24FGttTtt11AY.46.40.000165
ORF7a24V24FGttTtt11AY.46.50.000198
ORF7a24V24IGttAtt11AY.470.000031
ORF7a24V24IGttAtt11AY.50.000021
ORF7a24V24LGttCtt11AY.5.30.000337
ORF7a24V24FGttTtt11AY.5.30.000337
ORF7a24V24AgTTgCA11AY.5.30.000337
ORF7a24V24FGttTtt11AY.500.000799
ORF7a24V24LGttCtt11AY.530.000288
ORF7a24V24delGTT---11AY.540.000095
ORF7a24V24IGttAtt11AY.550.000917
ORF7a24V24IGttAtt11AY.570.000656
ORF7a24V24FGttTtt11AY.580.000907
ORF7a24V24IGttAtt11AY.590.00053
ORF7a24V24FGttTtt11AY.590.00053
ORF7a24V24FGttTtt11AY.600.000938
ORF7a24V24FGttTtt11AY.630.000387
ORF7a24V24FGttTtt11AY.650.000533
ORF7a24V24delGTT---11AY.660.00107
ORF7a24V24LGttCtt11AY.670.000464
ORF7a24V24DgTtgAt11AY.670.000464
ORF7a24V24FGttTtt11AY.690.000187
ORF7a24V24FGttTtt11AY.70.000196
ORF7a24V24FGttTtt11AY.700.000209
ORF7a24V24FGttTtt11AY.710.000475
ORF7a24V24LGttCtt11AY.710.000475
ORF7a24V24IGttAtt11AY.720.001361
ORF7a24V24FGttTtt11AY.730.000665
ORF7a24V24VgtTgtG11AY.740.000116
ORF7a24V24FGttTtt11AY.740.000116
ORF7a24V24FGttTtt11AY.750.000056
ORF7a24V24delGTT---11AY.790.001211
ORF7a24V24FGttTtt11AY.860.00083
ORF7a24V24FGttTtt11AY.870.000833
ORF7a24V24FGttTtt11AY.90.000068
ORF7a24V24IGttAtt11AY.9.20.000037
ORF7a24V24delGTT---11AY.9.20.000037
ORF7a24V24FGttTtt11AY.900.000684
ORF7a24V24FGttTtt11AY.910.00073
ORF7a24V24delGTT---11AY.940.000443
ORF7a24V24LGttCtt11AY.940.000443
ORF7a24V24IGttAtt11AY.950.000761
ORF7a24V24VgtTgtC11AY.980.000079
ORF7a24V24IGttAtt11AY.980.000079
ORF7a24V24LGttCtt11B0.000128
ORF7a24V24FGttTtt11B0.000128
ORF7a24V24IGttAtt11B.1.1.1170.009709
ORF7a24V24delGTT---11B.1.1.1290.009174
ORF7a24V24FGttTtt11B.1.1.1330.008475
ORF7a24V24delGTT---11B.1.1.1370.0125
ORF7a24V24IGttAtt11B.1.1.140.017241
ORF7a24V24FGttTtt11B.1.1.1900.05
ORF7a24V24delGTT---11B.1.1.2070.001182
ORF7a24V24delGTT---11B.1.1.2220.000204
ORF7a24V24FGttTtt11B.1.1.2340.012048
ORF7a24V24FGttTtt11B.1.1.2840.000107
ORF7a24V24FGttTtt11B.1.1.3040.002809
ORF7a24V24FGttTtt11B.1.1.3050.003861
ORF7a24V24FGttTtt11B.1.1.3260.001761
ORF7a24V24FGttTtt11B.1.1.3480.000796
ORF7a24V24FGttTtt11B.1.1.3750.011905
ORF7a24V24FGttTtt11B.1.1.3760.005952
ORF7a24V24AgTtgCt11B.1.1.3970.002252
ORF7a24V24FGttTtt11B.1.1.3970.002252
ORF7a24V24IGttAtt11B.1.1.4040.015873
ORF7a24V24FGttTtt11B.1.1.4200.001006
ORF7a24V24IGttAtt11B.1.1.4200.001006
ORF7a24V24FGttTtt11B.1.1.4480.002033
ORF7a24V24IGttAtt11B.1.1.500.000679
ORF7a24V24FGttTtt11B.1.1.500.000679
ORF7a24V24FGttTtt11B.1.1.510.001718
ORF7a24V24delGTT---11B.1.1.5190.00004
ORF7a24V24delGTT---11B.1.1.5220.017241
ORF7a24V24IGttAtt11B.1.1.540.003021
ORF7a24V24delGTT---11B.1.1150.021739
ORF7a24V24FGttTtt11B.1.1200.007692
ORF7a24V24delGTT---11B.1.1770.000013
ORF7a24V24GgTtgGt11B.1.1770.000013
ORF7a24V24FGttTtt11B.1.177.170.000821
ORF7a24V24FGttTtt11B.1.177.230.003236
ORF7a24V24FGttTtt11B.1.177.300.002513
ORF7a24V24FGttTtt11B.1.177.40.000211
ORF7a24V24FGttTtt11B.1.177.570.000281
ORF7a24V24IGttAtt11B.1.177.630.002703
ORF7a24V24FGttTtt11B.1.177.790.002342
ORF7a24V24delGTT---11B.1.177.810.000189
ORF7a24V24FGttTtt11B.1.177.820.000477
ORF7a24V24LGttCtt11B.1.1790.003759
ORF7a24V24IGttAtt11B.1.20.000009
ORF7a24V24delGTT---11B.1.214.20.0006
ORF7a24V24AgTtgCt11B.1.2210.000071
ORF7a24V24delGTT---11B.1.2210.000071
ORF7a24V24del2GTt--t11B.1.2340.000132
ORF7a24V24FGttTtt11B.1.2340.000132
ORF7a24V24delGTT---11B.1.2400.000216
ORF7a24V24FGttTtt11B.1.2400.000216
ORF7a24V24FGttTtt11B.1.2410.000812
ORF7a24V24VgtTgtC11B.1.2430.00007
ORF7a24V24FGttTtt11B.1.258.170.000104
ORF7a24V24FGttTtt11B.1.258.30.001675
ORF7a24V24IGttAtt11B.1.3110.000275
ORF7a24V24LGttCtt11B.1.3110.000275
ORF7a24V24FGttTtt11B.1.3360.002439
ORF7a24V24IGttAtt11B.1.3510.00003
ORF7a24V24FGttTtt11B.1.360.000146
ORF7a24V24VgtTgtC11B.1.36.10.00114
ORF7a24V24AgTtgCt11B.1.36.350.002604
ORF7a24V24FGttTtt11B.1.3610.001289
ORF7a24V24FGttTtt11B.1.3750.00082
ORF7a24V24FGttTtt11B.1.3950.007042
ORF7a24V24delGTT---11B.1.4270.00005
ORF7a24V24AgTtgCt11B.1.4270.00005
ORF7a24V24FGttTtt11B.1.4280.00102
ORF7a24V24LGttCtt11B.1.4290.000024
ORF7a24V24FGttTtt11B.1.438.10.000107
ORF7a24V24IGttAtt11B.1.4530.003236
ORF7a24V24VgtTgtA11B.1.4590.004082
ORF7a24V24delGTT---11B.1.466.20.000391
ORF7a24V24delGTT---11B.1.4680.005714
ORF7a24V24delGTT---11B.1.4700.001404
ORF7a24V24IGttAtt11B.1.5030.002488
ORF7a24V24delGTT---11B.1.5250.000113
ORF7a24V24GgTtgGt11B.1.5260.000024
ORF7a24V24FGttTtt11B.1.5510.00129
ORF7a24V24FGttTtt11B.1.5600.00463
ORF7a24V24FGttTtt11B.1.5680.001111
ORF7a24V24FGttTtt11B.1.5820.000491
ORF7a24V24FGttTtt11B.1.6090.000479
ORF7a24V24LGttCtt11B.1.617.10.000129
ORF7a24V24IGttAtt11B.1.617.10.000129
ORF7a24V24del2gTTg--11B.1.617.20.000004
ORF7a24V24del1GTt-Ct11B.1.617.20.000004
ORF7a24V24delGTT---11B.1.617.30.002985
ORF7a24V24FGttTtt11B.1.617.30.002985
ORF7a24V24delGTT---11B.1.6200.000946
ORF7a24V24IGttAtt11B.1.6280.000352
ORF7a24V24delGTT---11B.1.6300.005236
ORF7a24V24FGttTtt11B.1.6370.000073
ORF7a24V24FGttTtt11B.60.00091
ORF7a24V24DgTtgAt11B.610.005747
ORF7a24V24FGttTtt11C.10.002392
ORF7a24V24FGttTtt11C.120.007194
ORF7a24V24VgtTgtA11C.140.004329
ORF7a24V24VgtTgtC11C.260.007353
ORF7a24V24FGttTtt11C.360.000911
ORF7a24V24delGTT---11C.36.30.000567
ORF7a24V24FGttTtt11C.37.10.002618
ORF7a24V24AgTtgCt11D.20.000075
ORF7a24V24AgTtgCt11N.50.001767
ORF7a24V24del2gTTg--11P.10.000016
ORF7a24V24IGttAtt11P.1.120.000484
ORF7a24V24FGttTtt11P.1.170.000162
ORF7a24V24del1Gtt-tt11P.20.000187
ORF7a24V24FGttTtt11Q.30.000145
ORF7a24V24AgTtgCt11Q.30.000145
ORF7a24V24LGttCtt11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.