CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 21

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a21Q21deldelCAA---65056505127454-27456
ORF7a21Q21RnonsyncAacGa134913410.9940727454-27456
ORF7a21Q21RnonsynCAaAGa134930.0022238727454-27456
ORF7a21Q21RnonsyncAAcGG134930.0022238727454-27456
ORF7a21Q21RnonsyncAAcGT134910.0007412927454-27456
ORF7a21Q21RnonsynCAAAGG134910.0007412927454-27456
ORF7a21Q21QsyncaAcaG11161116127454-27456
ORF7a21Q21XnonsynCaaTaa2182140.98165127454-27456
ORF7a21Q21XnonsynCAaTGa21820.0091743127454-27456
ORF7a21Q21XnonsynCaATaG21820.0091743127454-27456
ORF7a21Q21HnonsyncaAcaC1561330.85256427454-27456
ORF7a21Q21HnonsyncaAcaT156230.14743627454-27456
ORF7a21Q21LnonsyncAacTa7070127454-27456
ORF7a21Q21KnonsynCaaAaa4343127454-27456
ORF7a21Q21del1delCaa-aa630.527454-27456
ORF7a21Q21del1delcAac-a620.33333327454-27456
ORF7a21Q21del1delCAA-GW610.16666727454-27456
ORF7a21Q21EnonsynCaaGaa33127454-27456
ORF7a21Q21del2delCAA--N310.33333327454-27456
ORF7a21Q21del2delCAAT--310.33333327454-27456
ORF7a21Q21del2delCAa--a310.33333327454-27456
ORF7a21Q21YnonsynCaATaT22127454-27456
ORF7a21Q21WnonsynCAATGG22127454-27456
ORF7a21Q21PnonsyncAacCa22127454-27456
ORF7a21Q21CnonsynCAATGT11127454-27456
ORF7a21Q21SnonsynCAATCT11127454-27456

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a21Q21delCAA---65056505All0.001244
ORF7a21Q21delCAA---58505850B.1.1.70.005237
ORF7a21Q21RcAacGa13411349All0.000256
ORF7a21Q21RCAaAGa31349All0.000001
ORF7a21Q21RcAAcGG31349All0.000001
ORF7a21Q21RCAAAGG11349All0
ORF7a21Q21RcAAcGT11349All0
ORF7a21Q21QcaAcaG11161116All0.000213
ORF7a21Q21RcAacGa630630AD.20.137946
ORF7a21Q21RcAacGa551551B.1.1.70.000493
ORF7a21Q21QcaAcaG517517B.1.1.70.000463
ORF7a21Q21XCaaTaa214218All0.000041
ORF7a21Q21XCAaTGa2218All0
ORF7a21Q21XCaATaG2218All0
ORF7a21Q21delCAA---179179B.1.177.210.013688
ORF7a21Q21HcaAcaC133156All0.000025
ORF7a21Q21HcaAcaT23156All0.000004
ORF7a21Q21QcaAcaG142142B.1.5510.183226
ORF7a21Q21delCAA---131131AY.40.000204
ORF7a21Q21HcaAcaC9393AY.40.000145
ORF7a21Q21LcAacTa7070All0.000013
ORF7a21Q21QcaAcaG6767AY.440.000408
ORF7a21Q21QcaAcaG6262B.1.1770.000816
ORF7a21Q21QcaAcaG5959B.1.5230.144608
ORF7a21Q21QcaAcaG5555B.1.1.3340.901639
ORF7a21Q21RcAacGa5252AY.4.2.10.007747
ORF7a21Q21KCaaAaa4343All0.000008
ORF7a21Q21XCaaTaa4040AY.40.000062
ORF7a21Q21XCaaTaa3536B.1.1.70.000031
ORF7a21Q21XCAaTGa136B.1.1.70.000001
ORF7a21Q21XCaaTaa3131AY.470.000964
ORF7a21Q21RcAacGa3131P.10.000488
ORF7a21Q21QcaAcaG2525AY.50.000516
ORF7a21Q21delCAA---2323AY.30.000229
ORF7a21Q21delCAA---2121AY.290.000331
ORF7a21Q21LcAacTa1919B.1.1.70.000017
ORF7a21Q21HcaAcaT1319B.1.1.70.000012
ORF7a21Q21HcaAcaC619B.1.1.70.000005
ORF7a21Q21QcaAcaG1919B.1.617.20.000072
ORF7a21Q21QcaAcaG1818B.10.000165
ORF7a21Q21delCAA---1717AY.430.000075
ORF7a21Q21XCaaTaa1616AY.4.20.000347
ORF7a21Q21delCAA---1515AY.250.00009
ORF7a21Q21QcaAcaG1515AY.40.000023
ORF7a21Q21delCAA---1515AY.440.000091
ORF7a21Q21delCAA---1414AY.1030.000087
ORF7a21Q21LcAacTa1414AY.40.000022
ORF7a21Q21delCAA---1414B.1.617.20.000053
ORF7a21Q21delCAA---1313B.10.000119
ORF7a21Q21QcaAcaG1212AY.470.000373
ORF7a21Q21QcaAcaG1212B.1.1.4870.067039
ORF7a21Q21QcaAcaG1212B.1.2210.000852
ORF7a21Q21RcAacGa1111AY.40.000017
ORF7a21Q21delCAA---1010AY.390.000247
ORF7a21Q21delCAA---1010B.1.1.2140.000555
ORF7a21Q21XCaaTaa910B.1.617.20.000034
ORF7a21Q21XCaATaG110B.1.617.20.000004
ORF7a21Q21QcaAcaG99AY.430.00004
ORF7a21Q21RcAacGa89B.10.000073
ORF7a21Q21RcAAcGG19B.10.000009
ORF7a21Q21delCAA---99B.1.1.2840.000967
ORF7a21Q21KCaaAaa99B.1.1.70.000008
ORF7a21Q21delCAA---99B.1.20.000079
ORF7a21Q21delCAA---99C.80.040179
ORF7a21Q21delCAA---99P.10.000142
ORF7a21Q21HcaAcaC88AY.440.000049
ORF7a21Q21RcAacGa88C.370.000929
ORF7a21Q21XCaaTaa77AY.1030.000043
ORF7a21Q21delCAA---77B.1.1770.000092
ORF7a21Q21HcaAcaC57B.1.617.20.000019
ORF7a21Q21HcaAcaT27B.1.617.20.000008
ORF7a21Q21delCAA---77C.370.000812
ORF7a21Q21del1Caa-aa36All0.000001
ORF7a21Q21del1cAac-a26All0
ORF7a21Q21del1CAA-GW16All0
ORF7a21Q21LcAacTa66AY.4.2.10.000894
ORF7a21Q21XCaaTaa46AY.430.000018
ORF7a21Q21RcAacGa36AY.430.000013
ORF7a21Q21RcAAcGG16AY.430.000004
ORF7a21Q21RcAAcGT16AY.430.000004
ORF7a21Q21XCaATaG16AY.430.000004
ORF7a21Q21XCAaTGa16AY.430.000004
ORF7a21Q21RCAaAGa16AY.430.000004
ORF7a21Q21delCAA---66AY.470.000187
ORF7a21Q21QcaAcaG66B.1.20.000053
ORF7a21Q21delCAA---66B.1.5260.000141
ORF7a21Q21delCAA---55AY.1180.000313
ORF7a21Q21delCAA---55AY.260.000142
ORF7a21Q21KCaaAaa55AY.50.000103
ORF7a21Q21QcaAcaG55B.1.177.120.000758
ORF7a21Q21delCAA---55B.1.177.440.002595
ORF7a21Q21QcaAcaG55B.1.177.860.000917
ORF7a21Q21RcAacGa55B.1.36.340.106383
ORF7a21Q21XCaaTaa55B.1.5250.000566
ORF7a21Q21RcAacGa45B.1.617.20.000015
ORF7a21Q21RCAaAGa15B.1.617.20.000004
ORF7a21Q21delCAA---55Q.80.000825
ORF7a21Q21KCaaAaa440.222222
ORF7a21Q21QcaAcaG44AY.1030.000025
ORF7a21Q21LcAacTa44AY.1030.000025
ORF7a21Q21XCaaTaa44AY.250.000024
ORF7a21Q21RcAacGa44AY.250.000024
ORF7a21Q21QcaAcaG44AY.4.20.000087
ORF7a21Q21LcAacTa44AY.470.000124
ORF7a21Q21delCAA---44AY.98.10.000194
ORF7a21Q21QcaAcaG44B.1.10.000073
ORF7a21Q21QcaAcaG44B.1.1.2220.000816
ORF7a21Q21RcAacGa44B.1.20.000035
ORF7a21Q21delCAA---44B.1.2340.000528
ORF7a21Q21QcaAcaG44B.1.2580.000266
ORF7a21Q21delCAA---44B.1.2580.000266
ORF7a21Q21delCAA---44B.1.3510.000119
ORF7a21Q21delCAA---44B.1.4290.000094
ORF7a21Q21XCaaTaa44B.1.4350.045455
ORF7a21Q21XCaaTaa44C.370.000464
ORF7a21Q21QcaAcaG44P.10.000063
ORF7a21Q21delCAA---44P.1.160.001496
ORF7a21Q21ECaaGaa33All0.000001
ORF7a21Q21del2CAa--a13All0
ORF7a21Q21del2CAA--N13All0
ORF7a21Q21del2CAAT--13All0
ORF7a21Q21XCaaTaa33AY.1000.000138
ORF7a21Q21delCAA---33AY.1060.001005
ORF7a21Q21XCaaTaa33AY.270.000194
ORF7a21Q21QcaAcaG33AY.30.00003
ORF7a21Q21XCaaTaa33AY.30.00003
ORF7a21Q21delCAA---33AY.3.10.000256
ORF7a21Q21XCaaTaa33AY.360.000445
ORF7a21Q21LcAacTa33AY.360.000445
ORF7a21Q21KCaaAaa33AY.430.000013
ORF7a21Q21RcAacGa33AY.440.000018
ORF7a21Q21HcaAcaC33AY.99.20.000276
ORF7a21Q21KCaaAaa33B.10.000027
ORF7a21Q21XCaaTaa33B.1.2210.000213
ORF7a21Q21RcAacGa33B.1.258.170.000312
ORF7a21Q21KCaaAaa33B.1.617.20.000011
ORF7a21Q21LcAacTa33B.1.617.20.000011
ORF7a21Q21delCAA---33B.1.6260.017143
ORF7a21Q21XCaaTaa220.111111
ORF7a21Q21RcAacGa22A.2.50.000998
ORF7a21Q21delCAA---22A.280.005291
ORF7a21Q21WCAATGG22All0
ORF7a21Q21YCaATaT22All0
ORF7a21Q21PcAacCa22All0
ORF7a21Q21delCAA---22AY.1000.000092
ORF7a21Q21QcaAcaG22AY.1020.000053
ORF7a21Q21XCaaTaa22AY.1180.000125
ORF7a21Q21delCAA---22AY.1190.000071
ORF7a21Q21delCAA---22AY.120.10.000642
ORF7a21Q21delCAA---22AY.200.000078
ORF7a21Q21KCaaAaa22AY.250.000012
ORF7a21Q21QcaAcaG22AY.290.000032
ORF7a21Q21HcaAcaT12AY.290.000016
ORF7a21Q21HcaAcaC12AY.290.000016
ORF7a21Q21delCAA---22AY.29.10.000441
ORF7a21Q21delCAA---22AY.330.000134
ORF7a21Q21KCaaAaa22AY.390.000049
ORF7a21Q21delCAA---22AY.420.00008
ORF7a21Q21HcaAcaT22AY.430.000009
ORF7a21Q21LcAacTa22AY.430.000009
ORF7a21Q21LcAacTa22AY.440.000012
ORF7a21Q21HcaAcaT22AY.5.30.000675
ORF7a21Q21QcaAcaG22AY.560.00321
ORF7a21Q21XCaaTaa22AY.60.000082
ORF7a21Q21delCAA---22AY.750.000112
ORF7a21Q21RcAacGa22AY.90.000135
ORF7a21Q21delCAA---22AY.90.000135
ORF7a21Q21XCaaTaa22B.10.000018
ORF7a21Q21HcaAcaC22B.10.000018
ORF7a21Q21KCaaAaa22B.1.10.000036
ORF7a21Q21delCAA---22B.1.10.000036
ORF7a21Q21KCaaAaa22B.1.1.1980.002937
ORF7a21Q21QcaAcaG22B.1.1.3980.006452
ORF7a21Q21HcaAcaC22B.1.1.5190.000079
ORF7a21Q21delCAA---22B.1.1600.000062
ORF7a21Q21RcAacGa22B.1.1600.000062
ORF7a21Q21LcAacTa22B.1.1770.000026
ORF7a21Q21RcAacGa22B.1.1770.000026
ORF7a21Q21XCaaTaa22B.1.177.630.005405
ORF7a21Q21QcaAcaG22B.1.177.830.002963
ORF7a21Q21delCAA---22B.1.177.860.000367
ORF7a21Q21XCaaTaa22B.1.20.000018
ORF7a21Q21QcaAcaG22B.1.2400.000431
ORF7a21Q21delCAA---22B.1.258.110.000793
ORF7a21Q21QcaAcaG22B.1.351.20.000605
ORF7a21Q21delCAA---22B.1.360.000292
ORF7a21Q21QcaAcaG22B.1.36.290.001035
ORF7a21Q21delCAA---22B.1.36.380.003284
ORF7a21Q21HcaAcaC22B.1.3810.015625
ORF7a21Q21QcaAcaG22B.1.4290.000047
ORF7a21Q21QcaAcaG22B.1.5210.00995
ORF7a21Q21QcaAcaG22B.1.5250.000226
ORF7a21Q21delCAA---22B.1.5960.000174
ORF7a21Q21XCaaTaa22B.1.6200.001892
ORF7a21Q21HcaAcaC12B.1.6210.000089
ORF7a21Q21HcaAcaT12B.1.6210.000089
ORF7a21Q21delCAA---22B.1.6370.000146
ORF7a21Q21XCaaTaa22P.10.000032
ORF7a21Q21HcaAcaC22P.20.000373
ORF7a21Q21XCaaTaa22P.20.000373
ORF7a21Q21delCAA---22Q.10.000253
ORF7a21Q21PcAacCa110.055556
ORF7a21Q21delCAA---11A0.000387
ORF7a21Q21RcAacGa11A.10.000282
ORF7a21Q21delCAA---11A.20.000662
ORF7a21Q21QcaAcaG11A.2.50.000499
ORF7a21Q21delCAA---11AK.10.012658
ORF7a21Q21CCAATGT11All0
ORF7a21Q21SCAATCT11All0
ORF7a21Q21QcaAcaG11AY.1000.000046
ORF7a21Q21HcaAcaC11AY.1020.000027
ORF7a21Q21RcAacGa11AY.1020.000027
ORF7a21Q21RCAAAGG11AY.1030.000006
ORF7a21Q21delCAA---11AY.1080.001103
ORF7a21Q21delCAA---11AY.1090.00074
ORF7a21Q21RcAacGa11AY.1130.000142
ORF7a21Q21QcaAcaG11AY.1160.000287
ORF7a21Q21QcaAcaG11AY.1180.000063
ORF7a21Q21LcAacTa11AY.1190.000035
ORF7a21Q21delCAA---11AY.1200.000037
ORF7a21Q21QcaAcaG11AY.120.10.000321
ORF7a21Q21delCAA---11AY.1210.000135
ORF7a21Q21QcaAcaG11AY.140.000088
ORF7a21Q21HcaAcaC11AY.190.00114
ORF7a21Q21LcAacTa11AY.200.000039
ORF7a21Q21QcaAcaG11AY.250.000006
ORF7a21Q21LcAacTa11AY.250.000006
ORF7a21Q21del1Caa-aa11AY.250.000006
ORF7a21Q21XCaaTaa11AY.260.000028
ORF7a21Q21RcAacGa11AY.290.000016
ORF7a21Q21XCaaTaa11AY.290.000016
ORF7a21Q21del2CAa--a11AY.30.00001
ORF7a21Q21HcaAcaC11AY.30.00001
ORF7a21Q21WCAATGG11AY.300.000396
ORF7a21Q21del2CAAT--11AY.330.000067
ORF7a21Q21QcaAcaG11AY.330.000067
ORF7a21Q21XCaaTaa11AY.340.000097
ORF7a21Q21delCAA---11AY.340.000097
ORF7a21Q21RcAacGa11AY.360.000148
ORF7a21Q21del1Caa-aa11AY.390.000025
ORF7a21Q21QcaAcaG11AY.390.000025
ORF7a21Q21XCaaTaa11AY.390.000025
ORF7a21Q21LcAacTa11AY.390.000025
ORF7a21Q21RcAacGa11AY.39.10.00004
ORF7a21Q21KCaaAaa11AY.40.000002
ORF7a21Q21delCAA---11AY.4.20.000022
ORF7a21Q21QcaAcaG11AY.420.00004
ORF7a21Q21LcAacTa11AY.420.00004
ORF7a21Q21YCaATaT11AY.430.000004
ORF7a21Q21WCAATGG11AY.430.000004
ORF7a21Q21ECaaGaa11AY.430.000004
ORF7a21Q21del1Caa-aa11AY.430.000004
ORF7a21Q21CCAATGT11AY.430.000004
ORF7a21Q21XCaaTaa11AY.440.000006
ORF7a21Q21del1cAac-a11AY.440.000006
ORF7a21Q21KCaaAaa11AY.450.000122
ORF7a21Q21QcaAcaG11AY.450.000122
ORF7a21Q21delCAA---11AY.450.000122
ORF7a21Q21QcaAcaG11AY.46.50.000198
ORF7a21Q21KCaaAaa11AY.46.60.000072
ORF7a21Q21XCaaTaa11AY.50.000021
ORF7a21Q21QcaAcaG11AY.5.30.000337
ORF7a21Q21XCaaTaa11AY.5.40.000277
ORF7a21Q21delCAA---11AY.540.000095
ORF7a21Q21XCaaTaa11AY.610.000105
ORF7a21Q21XCaaTaa11AY.630.000387
ORF7a21Q21delCAA---11AY.660.00107
ORF7a21Q21LcAacTa11AY.670.000464
ORF7a21Q21delCAA---11AY.670.000464
ORF7a21Q21RcAacGa11AY.730.000665
ORF7a21Q21XCaaTaa11AY.750.000056
ORF7a21Q21RcAacGa11AY.770.001127
ORF7a21Q21del1cAac-a11AY.790.001211
ORF7a21Q21delCAA---11AY.790.001211
ORF7a21Q21HcaAcaC11AY.80.000606
ORF7a21Q21SCAATCT11AY.840.000437
ORF7a21Q21HcaAcaT11AY.850.000427
ORF7a21Q21QcaAcaG11AY.90.000068
ORF7a21Q21delCAA---11AY.9.20.000037
ORF7a21Q21LcAacTa11AY.9.20.000037
ORF7a21Q21KCaaAaa11AY.9.20.000037
ORF7a21Q21LcAacTa11AY.920.000287
ORF7a21Q21RcAacGa11AY.920.000287
ORF7a21Q21delCAA---11AY.940.000443
ORF7a21Q21XCaaTaa11AY.980.000079
ORF7a21Q21QcaAcaG11AY.990.001049
ORF7a21Q21LcAacTa11AZ.20.000821
ORF7a21Q21del1CAA-GW11B.10.000009
ORF7a21Q21XCaaTaa11B.1.10.000018
ORF7a21Q21RCAaAGa11B.1.10.000018
ORF7a21Q21delCAA---11B.1.1.1370.0125
ORF7a21Q21QcaAcaG11B.1.1.1530.001095
ORF7a21Q21delCAA---11B.1.1.2070.001182
ORF7a21Q21delCAA---11B.1.1.2220.000204
ORF7a21Q21delCAA---11B.1.1.2580.003257
ORF7a21Q21HcaAcaT11B.1.1.3180.000302
ORF7a21Q21QcaAcaG11B.1.1.390.00051
ORF7a21Q21delCAA---11B.1.1.5190.00004
ORF7a21Q21XCaaTaa11B.1.1.5190.00004
ORF7a21Q21QcaAcaG11B.1.1.5190.00004
ORF7a21Q21delCAA---11B.1.1.5220.017241
ORF7a21Q21QcaAcaG11B.1.1.560.017857
ORF7a21Q21ECaaGaa11B.1.1.70.000001
ORF7a21Q21del2CAA--N11B.1.1.70.000001
ORF7a21Q21PcAacCa11B.1.1.70.000001
ORF7a21Q21delCAA---11B.1.1150.021739
ORF7a21Q21QcaAcaG11B.1.1600.000031
ORF7a21Q21XCaaTaa11B.1.177.180.00116
ORF7a21Q21HcaAcaC11B.1.177.320.00135
ORF7a21Q21XCaaTaa11B.1.177.40.000211
ORF7a21Q21RcAacGa11B.1.177.40.000211
ORF7a21Q21KCaaAaa11B.1.177.630.002703
ORF7a21Q21delCAA---11B.1.177.810.000189
ORF7a21Q21HcaAcaC11B.1.20.000009
ORF7a21Q21KCaaAaa11B.1.20.000009
ORF7a21Q21delCAA---11B.1.214.20.0006
ORF7a21Q21delCAA---11B.1.2210.000071
ORF7a21Q21RcAacGa11B.1.2210.000071
ORF7a21Q21XCaaTaa11B.1.2220.001692
ORF7a21Q21delCAA---11B.1.2400.000216
ORF7a21Q21QcaAcaG11B.1.2410.000812
ORF7a21Q21XCaaTaa11B.1.2430.00007
ORF7a21Q21HcaAcaC11B.1.3110.000275
ORF7a21Q21QcaAcaG11B.1.3130.006579
ORF7a21Q21RcAacGa11B.1.3490.000715
ORF7a21Q21LcAacTa11B.1.351.20.000303
ORF7a21Q21LcAacTa11B.1.360.000146
ORF7a21Q21RcAAcGG11B.1.36.80.001
ORF7a21Q21QcaAcaG11B.1.4020.009804
ORF7a21Q21KCaaAaa11B.1.4090.000781
ORF7a21Q21delCAA---11B.1.4270.00005
ORF7a21Q21RcAacGa11B.1.438.10.000107
ORF7a21Q21XCaaTaa11B.1.438.10.000107
ORF7a21Q21QcaAcaG11B.1.466.20.000391
ORF7a21Q21delCAA---11B.1.466.20.000391
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