CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 14

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF7a	14	T14I		nonsyn	aCt	aTt	16818	16818	1	27433-27435
ORF7a	14	T14del		del	ACT	---	6654	6654	1	27433-27435
ORF7a	14	T14N		nonsyn	aCt	aAt	365	365	1	27433-27435
ORF7a	14	T14T		syn	acT	acC	218	163	0.747706	27433-27435
ORF7a	14	T14T		syn	acT	acG	218	50	0.229358	27433-27435
ORF7a	14	T14T		syn	acT	acA	218	5	0.0229358	27433-27435
ORF7a	14	T14S		nonsyn	aCt	aGt	145	138	0.951724	27433-27435
ORF7a	14	T14S		nonsyn	Act	Tct	145	4	0.0275862	27433-27435
ORF7a	14	T14S		nonsyn	aCT	aGC	145	2	0.0137931	27433-27435
ORF7a	14	T14S		nonsyn	AcT	TcA	145	1	0.00689655	27433-27435
ORF7a	14	T14A		nonsyn	Act	Gct	42	42	1	27433-27435
ORF7a	14	T14P		nonsyn	Act	Cct	26	25	0.961538	27433-27435
ORF7a	14	T14P		nonsyn	AcT	CcA	26	1	0.0384615	27433-27435
ORF7a	14	T14del1		del	acT	ac-	13	5	0.384615	27433-27435
ORF7a	14	T14del1		del	ACT	-NN	13	4	0.307692	27433-27435
ORF7a	14	T14del1		del	aCt	a-t	13	2	0.153846	27433-27435
ORF7a	14	T14del1		del	ACt	-Nt	13	2	0.153846	27433-27435
ORF7a	14	T14del2		del	aCT	a--	5	3	0.6	27433-27435
ORF7a	14	T14del2		del	ACt	--t	5	2	0.4	27433-27435
ORF7a	14	T14R		nonsyn	aCT	aGG	3	2	0.666667	27433-27435
ORF7a	14	T14R		nonsyn	ACT	CGC	3	1	0.333333	27433-27435
ORF7a	14	T14V		nonsyn	ACt	GTt	2	2	1	27433-27435
ORF7a	14	T14M		nonsyn	aCT	aTG	1	1	1	27433-27435
ORF7a	14	T14F		nonsyn	ACt	TTt	1	1	1	27433-27435
ORF7a	14	T14D		nonsyn	ACt	GAt	1	1	1	27433-27435

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF7a	14	T14I	aCt	aTt	16818	16818	All	0.003217
ORF7a	14	T14del	ACT	---	6654	6654	All	0.001273
ORF7a	14	T14del	ACT	---	5920	5920	B.1.1.7	0.0053
ORF7a	14	T14I	aCt	aTt	2676	2676	B.1.160	0.083458
ORF7a	14	T14I	aCt	aTt	2111	2111	AY.4	0.003286
ORF7a	14	T14I	aCt	aTt	2077	2077	B.1.1.7	0.001859
ORF7a	14	T14I	aCt	aTt	1274	1274	B.1.409	0.995313
ORF7a	14	T14I	aCt	aTt	1059	1059	B.1.160.16	0.984201
ORF7a	14	T14I	aCt	aTt	662	662	AP.1	0.993994
ORF7a	14	T14I	aCt	aTt	462	462	B.1.36.21	0.99784
ORF7a	14	T14I	aCt	aTt	441	441	B.1.160.14	0.934322
ORF7a	14	T14N	aCt	aAt	365	365	All	0.00007
ORF7a	14	T14I	aCt	aTt	345	345	B.1.617.2	0.001299
ORF7a	14	T14I	aCt	aTt	299	299	AY.103	0.001857
ORF7a	14	T14I	aCt	aTt	295	295	B.1.2	0.002598
ORF7a	14	T14I	aCt	aTt	278	278	AM.4	0.992857
ORF7a	14	T14I	aCt	aTt	258	258	AY.44	0.00157
ORF7a	14	T14T	acT	acC	163	218	All	0.000031
ORF7a	14	T14T	acT	acG	50	218	All	0.00001
ORF7a	14	T14T	acT	acA	5	218	All	0.000001
ORF7a	14	T14I	aCt	aTt	193	193	B.1	0.001768
ORF7a	14	T14I	aCt	aTt	193	193	B.1.160.15	0.955446
ORF7a	14	T14del	ACT	---	179	179	B.1.177.21	0.013688
ORF7a	14	T14I	aCt	aTt	176	176	AY.3	0.001751
ORF7a	14	T14I	aCt	aTt	172	172	AY.43	0.000762
ORF7a	14	T14I	aCt	aTt	169	169	AY.74	0.019544
ORF7a	14	T14I	aCt	aTt	168	168	B.1.160.11	0.96
ORF7a	14	T14I	aCt	aTt	163	163	B.1.626	0.931429
ORF7a	14	T14I	aCt	aTt	162	162	B.1.177	0.002133
ORF7a	14	T14I	aCt	aTt	155	155	B.1.160.12	0.99359
ORF7a	14	T14S	aCt	aGt	138	145	All	0.000026
ORF7a	14	T14S	Act	Tct	4	145	All	0.000001
ORF7a	14	T14S	aCT	aGC	2	145	All	0
ORF7a	14	T14S	AcT	TcA	1	145	All	0
ORF7a	14	T14I	aCt	aTt	142	142	AY.4.5	0.015264
ORF7a	14	T14del	ACT	---	139	139	AY.4	0.000216
ORF7a	14	T14I	aCt	aTt	132	132	B.1.429	0.003106
ORF7a	14	T14I	aCt	aTt	130	130	B.1.36.18	0.054622
ORF7a	14	T14N	aCt	aAt	116	116	AY.44	0.000706
ORF7a	14	T14I	aCt	aTt	115	115	AB.1	0.942623
ORF7a	14	T14I	aCt	aTt	102	102	AY.25	0.000614
ORF7a	14	T14I	aCt	aTt	91	91	B.1.258	0.006056
ORF7a	14	T14I	aCt	aTt	90	90	P.1	0.001418
ORF7a	14	T14I	aCt	aTt	89	89	AY.120.2.1	0.044345
ORF7a	14	T14I	aCt	aTt	88	88	B.1.526	0.002068
ORF7a	14	T14I	aCt	aTt	81	81	P.1.7	0.025862
ORF7a	14	T14S	aCt	aGt	74	75	B.1.1.7	0.000066
ORF7a	14	T14S	Act	Tct	1	75	B.1.1.7	0.000001
ORF7a	14	T14I	aCt	aTt	70	70	B.1.1	0.00127
ORF7a	14	T14N	aCt	aAt	66	66	B.1.1.7	0.000059
ORF7a	14	T14I	aCt	aTt	63	63	B.1.243	0.004384
ORF7a	14	T14I	aCt	aTt	58	58	AY.29	0.000915
ORF7a	14	T14T	acT	acC	43	49	B.1.1.7	0.000038
ORF7a	14	T14T	acT	acG	6	49	B.1.1.7	0.000005
ORF7a	14	T14I	aCt	aTt	48	48	AY.102	0.001273
ORF7a	14	T14I	aCt	aTt	46	46	AY.3.1	0.003922
ORF7a	14	T14I	aCt	aTt	44	44	AY.20	0.00171
ORF7a	14	T14N	aCt	aAt	44	44	AY.4	0.000068
ORF7a	14	T14I	aCt	aTt	44	44	AY.47	0.001369
ORF7a	14	T14A	Act	Gct	42	42	All	0.000008
ORF7a	14	T14I	aCt	aTt	36	36	B.1.160.13	1
ORF7a	14	T14I	aCt	aTt	35	35	AY.23	0.002441
ORF7a	14	T14I	aCt	aTt	35	35	B.1.221	0.002486
ORF7a	14	T14I	aCt	aTt	35	35	B.1.351	0.00104
ORF7a	14	T14I	aCt	aTt	35	35	B.1.351.2	0.01059
ORF7a	14	T14I	aCt	aTt	34	34	AY.26	0.000963
ORF7a	14	T14del	ACT	---	33	33	B.1.617.2	0.000124
ORF7a	14	T14I	aCt	aTt	32	32	B.1.177.8	0.024078
ORF7a	14	T14I	aCt	aTt	31	31	AY.39	0.000766
ORF7a	14	T14I	aCt	aTt	29	29	B.1.428.2	0.966667
ORF7a	14	T14I	aCt	aTt	27	27	AY.75	0.001513
ORF7a	14	T14I	aCt	aTt	27	27	B.1.1.519	0.001072
ORF7a	14	T14P	Act	Cct	25	26	All	0.000005
ORF7a	14	T14P	AcT	CcA	1	26	All	0
ORF7a	14	T14I	aCt	aTt	26	26	AY.120	0.000967
ORF7a	14	T14I	aCt	aTt	26	26	AY.9.1	0.002177
ORF7a	14	T14N	aCt	aAt	25	25	B.1.2	0.00022
ORF7a	14	T14I	aCt	aTt	25	25	C.37	0.002902
ORF7a	14	T14del	ACT	---	24	24	AY.3	0.000239
ORF7a	14	T14I	aCt	aTt	24	24	B.1.577	0.016495
ORF7a	14	T14I	aCt	aTt	24	24	Q.8	0.003958
ORF7a	14	T14T	acT	acC	20	23	AY.4	0.000031
ORF7a	14	T14T	acT	acG	3	23	AY.4	0.000005
ORF7a	14	T14I	aCt	aTt	23	23	B.1.177.44	0.011936
ORF7a	14	T14I	aCt	aTt	23	23	B.1.369	0.00656
ORF7a	14	T14I	aCt	aTt	22	22	B.1.1.424	1
ORF7a	14	T14I	aCt	aTt	22	22	B.1.426	0.0222
ORF7a	14	T14T	acT	acC	22	22	B.1.429	0.000518
ORF7a	14	T14del	ACT	---	21	21	AY.25	0.000126
ORF7a	14	T14del	ACT	---	21	21	AY.29	0.000331
ORF7a	14	T14I	aCt	aTt	21	21	AY.46.4	0.003455
ORF7a	14	T14del	ACT	---	19	19	AY.43	0.000084
ORF7a	14	T14I	aCt	aTt	19	19	B.1.258.11	0.007531
ORF7a	14	T14I	aCt	aTt	19	19	B.1.433	0.060703
ORF7a	14	T14I	aCt	aTt	19	19	B.1.466.1	0.136691
ORF7a	14	T14I	aCt	aTt	19	19	B.1.621	0.001682
ORF7a	14	T14I	aCt	aTt	19	19	C.36.3	0.010777
ORF7a	14	T14P	Act	Cct	18	18	B.1.1.7	0.000016
ORF7a	14	T14I	aCt	aTt	18	18	B.1.177.18	0.020882
ORF7a	14	T14I	aCt	aTt	17	17	AY.33	0.001135
ORF7a	14	T14del	ACT	---	16	16	AY.44	0.000097
ORF7a	14	T14I	aCt	aTt	16	16	AY.54	0.001526
ORF7a	14	T14I	aCt	aTt	16	16	AY.9	0.001082
ORF7a	14	T14I	aCt	aTt	15	15	AY.119	0.00053
ORF7a	14	T14I	aCt	aTt	15	15	AY.4.2	0.000325
ORF7a	14	T14I	aCt	aTt	15	15	AY.5	0.00031
ORF7a	14	T14I	aCt	aTt	15	15	B.1.36	0.002189
ORF7a	14	T14I	aCt	aTt	14	14	AY.100	0.000644
ORF7a	14	T14del	ACT	---	14	14	AY.103	0.000087
ORF7a	14	T14I	aCt	aTt	14	14	AY.42	0.000563
ORF7a	14	T14I	aCt	aTt	14	14	AY.61	0.001467
ORF7a	14	T14del	ACT	---	14	14	B.1	0.000128
ORF7a	14	T14N	aCt	aAt	14	14	B.1.177	0.000184
ORF7a	14	T14I	aCt	aTt	14	14	B.1.427	0.000707
ORF7a	14	T14N	aCt	aAt	14	14	B.1.617.2	0.000053
ORF7a	14	T14del1	acT	ac-	5	13	All	0.000001
ORF7a	14	T14del1	ACT	-NN	4	13	All	0.000001
ORF7a	14	T14del1	aCt	a-t	2	13	All	0
ORF7a	14	T14del1	ACt	-Nt	2	13	All	0
ORF7a	14	T14S	aCt	aGt	13	13	AY.39.1	0.000515
ORF7a	14	T14S	aCt	aGt	13	13	AY.4	0.00002
ORF7a	14	T14I	aCt	aTt	13	13	AY.6	0.000535
ORF7a	14	T14I	aCt	aTt	13	13	B.1.1.214	0.000721
ORF7a	14	T14del	ACT	---	12	12	AY.39	0.000297
ORF7a	14	T14I	aCt	aTt	12	12	AY.98	0.000948
ORF7a	14	T14del	ACT	---	12	12	B.1.1.214	0.000665
ORF7a	14	T14T	acT	acG	12	12	B.1.526	0.000282
ORF7a	14	T14I	aCt	aTt	12	12	P.1.16	0.004489
ORF7a	14	T14I	aCt	aTt	11	11	AY.41	0.003233
ORF7a	14	T14T	acT	acC	10	11	AY.44	0.000061
ORF7a	14	T14T	acT	acG	1	11	AY.44	0.000006
ORF7a	14	T14I	aCt	aTt	11	11	AY.46.6	0.000794
ORF7a	14	T14I	aCt	aTt	11	11	AY.75.1	0.001983
ORF7a	14	T14I	aCt	aTt	11	11	B.1.637	0.000804
ORF7a	14	T14I	aCt	aTt	10	10	AY.116	0.002868
ORF7a	14	T14I	aCt	aTt	10	10	B.1.1.222	0.00204
ORF7a	14	T14del	ACT	---	10	10	B.1.2	0.000088
ORF7a	14	T14I	aCt	aTt	10	10	B.1.258.17	0.00104
ORF7a	14	T14I	aCt	aTt	10	10	B.1.582	0.004907
ORF7a	14	T14I	aCt	aTt	10	10	C.23	0.05814
ORF7a	14	T14del	ACT	---	10	10	P.1	0.000158
ORF7a	14	T14I	aCt	aTt	9	9	AY.109	0.006657
ORF7a	14	T14I	aCt	aTt	9	9	AY.113	0.001282
ORF7a	14	T14I	aCt	aTt	9	9	AY.59	0.004767
ORF7a	14	T14I	aCt	aTt	9	9	AY.9.2	0.000331
ORF7a	14	T14I	aCt	aTt	9	9	B	0.00115
ORF7a	14	T14I	aCt	aTt	9	9	B.1.1.28	0.002801
ORF7a	14	T14del	ACT	---	9	9	B.1.1.284	0.000967
ORF7a	14	T14I	aCt	aTt	9	9	B.1.83	0.138462
ORF7a	14	T14del	ACT	---	9	9	C.8	0.040179
ORF7a	14	T14N	aCt	aAt	8	8	AY.25	0.000048
ORF7a	14	T14del	ACT	---	8	8	B.1.177	0.000105
ORF7a	14	T14I	aCt	aTt	8	8	B.1.177.4	0.001688
ORF7a	14	T14I	aCt	aTt	8	8	B.1.311	0.002197
ORF7a	14	T14I	aCt	aTt	8	8	B.1.438.1	0.000858
ORF7a	14	T14S	aCt	aGt	7	8	B.1.617.2	0.000026
ORF7a	14	T14S	Act	Tct	1	8	B.1.617.2	0.000004
ORF7a	14	T14I	aCt	aTt	8	8	B.1.619	0.006969
ORF7a	14	T14I	aCt	aTt	8	8	Q.4	0.003638
ORF7a	14	T14N	aCt	aAt	7	7	AY.117	0.000592
ORF7a	14	T14del	ACT	---	7	7	AY.118	0.000439
ORF7a	14	T14T	acT	acG	4	7	AY.3	0.00004
ORF7a	14	T14T	acT	acC	2	7	AY.3	0.00002
ORF7a	14	T14T	acT	acA	1	7	AY.3	0.00001
ORF7a	14	T14I	aCt	aTt	7	7	AY.34	0.000679
ORF7a	14	T14del1	ACT	-NN	4	7	AY.44	0.000024
ORF7a	14	T14del1	ACt	-Nt	2	7	AY.44	0.000012
ORF7a	14	T14del1	aCt	a-t	1	7	AY.44	0.000006
ORF7a	14	T14I	aCt	aTt	7	7	AY.99.2	0.000645
ORF7a	14	T14N	aCt	aAt	7	7	B.1	0.000064
ORF7a	14	T14I	aCt	aTt	7	7	B.1.258.3	0.011725
ORF7a	14	T14I	aCt	aTt	7	7	B.1.36.1	0.007982
ORF7a	14	T14I	aCt	aTt	7	7	B.1.408	0.02583
ORF7a	14	T14T	acT	acC	5	7	B.1.617.2	0.000019
ORF7a	14	T14T	acT	acG	2	7	B.1.617.2	0.000008
ORF7a	14	T14del	ACT	---	7	7	C.37	0.000812
ORF7a	14	T14I	aCt	aTt	7	7	P.1.14	0.000335
ORF7a	14	T14T	acT	acC	4	6		0.222222
ORF7a	14	T14T	acT	acG	2	6		0.111111
ORF7a	14	T14I	aCt	aTt	6	6	AY.117	0.000507
ORF7a	14	T14T	acT	acC	6	6	AY.120	0.000223
ORF7a	14	T14del	ACT	---	6	6	AY.35	0.001398
ORF7a	14	T14T	acT	acC	6	6	AY.46	0.000624
ORF7a	14	T14del	ACT	---	6	6	AY.47	0.000187
ORF7a	14	T14I	aCt	aTt	6	6	B.1.1.25	0.003411
ORF7a	14	T14N	aCt	aAt	6	6	B.1.1.28	0.001867
ORF7a	14	T14I	aCt	aTt	6	6	B.1.1.33	0.002525
ORF7a	14	T14A	Act	Gct	6	6	B.1.1.7	0.000005
ORF7a	14	T14I	aCt	aTt	6	6	B.1.177.56	0.004005
ORF7a	14	T14I	aCt	aTt	6	6	B.1.177.81	0.001136
ORF7a	14	T14del	ACT	---	6	6	B.1.526	0.000141
ORF7a	14	T14I	aCt	aTt	6	6	B.1.596	0.000523
ORF7a	14	T14N	aCt	aAt	6	6	B.1.596	0.000523
ORF7a	14	T14I	aCt	aTt	6	6	B.1.617.1	0.000774
ORF7a	14	T14A	Act	Gct	6	6	B.1.617.2	0.000023
ORF7a	14	T14del	ACT	---	6	6	B.40	0.002186
ORF7a	14	T14I	aCt	aTt	6	6	P.1.15	0.001394
ORF7a	14	T14del2	aCT	a--	3	5	All	0.000001
ORF7a	14	T14del2	ACt	--t	2	5	All	0
ORF7a	14	T14T	acT	acC	5	5	AY.20	0.000194
ORF7a	14	T14T	acT	acC	3	5	AY.25	0.000018
ORF7a	14	T14T	acT	acG	1	5	AY.25	0.000006
ORF7a	14	T14T	acT	acA	1	5	AY.25	0.000006
ORF7a	14	T14del	ACT	---	5	5	AY.26	0.000142
ORF7a	14	T14I	aCt	aTt	5	5	AY.36	0.000741
ORF7a	14	T14del	ACT	---	5	5	B.1.1	0.000091
ORF7a	14	T14I	aCt	aTt	5	5	B.1.1.284	0.000537
ORF7a	14	T14I	aCt	aTt	5	5	B.1.1.403	0.128205
ORF7a	14	T14I	aCt	aTt	5	5	B.1.1.89	0.030303
ORF7a	14	T14del	ACT	---	5	5	B.1.177.44	0.002595
ORF7a	14	T14T	acT	acC	5	5	B.1.234	0.00066
ORF7a	14	T14N	aCt	aAt	5	5	B.1.36.29	0.002587
ORF7a	14	T14del	ACT	---	5	5	B.1.429	0.000118
ORF7a	14	T14I	aCt	aTt	5	5	D.2	0.000375
ORF7a	14	T14del	ACT	---	5	5	Q.8	0.000825
ORF7a	14	T14P	Act	Cct	4	4	AY.103	0.000025
ORF7a	14	T14I	aCt	aTt	4	4	AY.118	0.000251
ORF7a	14	T14I	aCt	aTt	4	4	AY.15	0.008889
ORF7a	14	T14I	aCt	aTt	4	4	AY.35	0.000932
ORF7a	14	T14T	acT	acG	3	4	AY.39	0.000074
ORF7a	14	T14T	acT	acC	1	4	AY.39	0.000025
ORF7a	14	T14I	aCt	aTt	4	4	AY.4.2.1	0.000596
ORF7a	14	T14S	aCt	aGt	4	4	AY.44	0.000024
ORF7a	14	T14I	aCt	aTt	4	4	AY.5.3	0.00135
ORF7a	14	T14I	aCt	aTt	4	4	AY.71	0.0019
ORF7a	14	T14I	aCt	aTt	4	4	AY.87	0.003331
ORF7a	14	T14del	ACT	---	4	4	AY.98.1	0.000194
ORF7a	14	T14I	aCt	aTt	4	4	B.1.1.348	0.003185
ORF7a	14	T14I	aCt	aTt	4	4	B.1.1.521	0.02139
ORF7a	14	T14I	aCt	aTt	4	4	B.1.1.70	0.001364
ORF7a	14	T14N	aCt	aAt	4	4	B.1.160	0.000125
ORF7a	14	T14I	aCt	aTt	4	4	B.1.232	0.002149
ORF7a	14	T14del	ACT	---	4	4	B.1.234	0.000528
ORF7a	14	T14I	aCt	aTt	4	4	B.1.240	0.000862
ORF7a	14	T14del	ACT	---	4	4	B.1.258	0.000266
ORF7a	14	T14del	ACT	---	4	4	B.1.351	0.000119
ORF7a	14	T14I	aCt	aTt	4	4	B.1.453	0.012945
ORF7a	14	T14T	acT	acG	4	4	B.1.525	0.000453
ORF7a	14	T14I	aCt	aTt	4	4	B.1.558	0.018265
ORF7a	14	T14I	aCt	aTt	4	4	B.1.561	0.001588
ORF7a	14	T14I	aCt	aTt	4	4	B.1.587	0.00759
ORF7a	14	T14I	aCt	aTt	4	4	B.1.595	0.001044
ORF7a	14	T14I	aCt	aTt	4	4	B.6	0.00364
ORF7a	14	T14I	aCt	aTt	4	4	C.36	0.003643
ORF7a	14	T14N	aCt	aAt	4	4	P.1	0.000063
ORF7a	14	T14del	ACT	---	4	4	P.1.16	0.001496
ORF7a	14	T14R	aCT	aGG	2	3	All	0
ORF7a	14	T14R	ACT	CGC	1	3	All	0
ORF7a	14	T14N	aCt	aAt	3	3	AY.103	0.000019
ORF7a	14	T14del	ACT	---	3	3	AY.106	0.001005
ORF7a	14	T14I	aCt	aTt	3	3	AY.106	0.001005
ORF7a	14	T14del	ACT	---	3	3	AY.107	0.001398
ORF7a	14	T14I	aCt	aTt	3	3	AY.121	0.000406
ORF7a	14	T14S	aCt	aGt	3	3	AY.20	0.000117
ORF7a	14	T14A	Act	Gct	3	3	AY.26	0.000085
ORF7a	14	T14I	aCt	aTt	3	3	AY.27	0.000194
ORF7a	14	T14N	aCt	aAt	3	3	AY.29	0.000047
ORF7a	14	T14del	ACT	---	3	3	AY.3.1	0.000256
ORF7a	14	T14T	acT	acC	3	3	AY.43	0.000013
ORF7a	14	T14I	aCt	aTt	3	3	AY.46	0.000312
ORF7a	14	T14del	ACT	---	3	3	AY.48	0.001395
ORF7a	14	T14I	aCt	aTt	3	3	AY.99	0.003148
ORF7a	14	T14A	Act	Gct	3	3	B.1.1	0.000054
ORF7a	14	T14I	aCt	aTt	3	3	B.1.1.170	0.003741
ORF7a	14	T14I	aCt	aTt	3	3	B.1.1.194	0.014851
ORF7a	14	T14I	aCt	aTt	3	3	B.1.1.243	0.012245
ORF7a	14	T14N	aCt	aAt	3	3	B.1.1.302	0.006224
ORF7a	14	T14I	aCt	aTt	3	3	B.1.1.318	0.000905
ORF7a	14	T14I	aCt	aTt	3	3	B.1.1.39	0.001529
ORF7a	14	T14T	acT	acG	3	3	B.1.1.397	0.006757
ORF7a	14	T14I	aCt	aTt	3	3	B.1.1.416	0.002715
ORF7a	14	T14I	aCt	aTt	3	3	B.1.1.434	0.001046
ORF7a	14	T14I	aCt	aTt	3	3	B.1.1.466	0.026087
ORF7a	14	T14I	aCt	aTt	3	3	B.1.157	0.008955
ORF7a	14	T14I	aCt	aTt	3	3	B.1.177.60	0.000655
ORF7a	14	T14I	aCt	aTt	3	3	B.1.177.73	0.001699
ORF7a	14	T14I	aCt	aTt	3	3	B.1.237	0.014925
ORF7a	14	T14I	aCt	aTt	3	3	B.1.346	0.003932
ORF7a	14	T14I	aCt	aTt	3	3	B.1.398	0.008929
ORF7a	14	T14I	aCt	aTt	3	3	B.1.413	0.012766
ORF7a	14	T14S	aCt	aGt	3	3	B.1.427	0.000151
ORF7a	14	T14I	aCt	aTt	3	3	B.1.473	0.057692
ORF7a	14	T14I	aCt	aTt	3	3	B.1.497	0.000944
ORF7a	14	T14I	aCt	aTt	3	3	B.1.525	0.000339
ORF7a	14	T14del	ACT	---	3	3	B.1.596	0.000261
ORF7a	14	T14del	ACT	---	3	3	B.1.626	0.017143
ORF7a	14	T14I	aCt	aTt	3	3	L.3	0.010638
ORF7a	14	T14T	acT	acC	3	3	P.1.15	0.000697
ORF7a	14	T14I	aCt	aTt	3	3	P.1.17	0.000485
ORF7a	14	T14I	aCt	aTt	3	3	R.1	0.00027
ORF7a	14	T14R	aCT	aGG	2	2		0.111111
ORF7a	14	T14S	aCT	aGC	2	2		0.111111
ORF7a	14	T14N	aCt	aAt	2	2		0.111111
ORF7a	14	T14T	acT	acG	2	2	A.2.5	0.000998
ORF7a	14	T14del	ACT	---	2	2	A.28	0.005291
ORF7a	14	T14I	aCt	aTt	2	2	AD.2	0.000438
ORF7a	14	T14V	ACt	GTt	2	2	All	0
ORF7a	14	T14del	ACT	---	2	2	AY.100	0.000092
ORF7a	14	T14S	aCt	aGt	2	2	AY.101	0.000981
ORF7a	14	T14A	Act	Gct	2	2	AY.102	0.000053
ORF7a	14	T14N	aCt	aAt	2	2	AY.102	0.000053
ORF7a	14	T14S	aCt	aGt	2	2	AY.103	0.000012
ORF7a	14	T14T	acT	acC	2	2	AY.106	0.00067
ORF7a	14	T14I	aCt	aTt	2	2	AY.107	0.000932
ORF7a	14	T14P	Act	Cct	2	2	AY.113	0.000285
ORF7a	14	T14del	ACT	---	2	2	AY.119	0.000071
ORF7a	14	T14S	aCt	aGt	2	2	AY.119	0.000071
ORF7a	14	T14del	ACT	---	2	2	AY.20	0.000078
ORF7a	14	T14T	acT	acC	2	2	AY.23	0.000139
ORF7a	14	T14I	aCt	aTt	2	2	AY.28	0.003781
ORF7a	14	T14del	ACT	---	2	2	AY.29.1	0.000441
ORF7a	14	T14I	aCt	aTt	2	2	AY.30	0.000791
ORF7a	14	T14A	Act	Gct	2	2	AY.33	0.000134
ORF7a	14	T14del	ACT	---	2	2	AY.33	0.000134
ORF7a	14	T14I	aCt	aTt	2	2	AY.34.1	0.00102
ORF7a	14	T14I	aCt	aTt	2	2	AY.37	0.000632
ORF7a	14	T14N	aCt	aAt	2	2	AY.39	0.000049
ORF7a	14	T14A	Act	Gct	2	2	AY.39	0.000049
ORF7a	14	T14I	aCt	aTt	2	2	AY.39.1	0.000079
ORF7a	14	T14A	Act	Gct	2	2	AY.4	0.000003
ORF7a	14	T14del	ACT	---	2	2	AY.42	0.00008
ORF7a	14	T14N	aCt	aAt	2	2	AY.43	0.000009
ORF7a	14	T14A	Act	Gct	2	2	AY.44	0.000012
ORF7a	14	T14I	aCt	aTt	2	2	AY.45	0.000243
ORF7a	14	T14I	aCt	aTt	2	2	AY.46.3	0.001867
ORF7a	14	T14I	aCt	aTt	2	2	AY.51	0.001818
ORF7a	14	T14A	Act	Gct	2	2	AY.52	0.001629
ORF7a	14	T14I	aCt	aTt	2	2	AY.62	0.000871
ORF7a	14	T14I	aCt	aTt	2	2	AY.7.2	0.001119
ORF7a	14	T14del	ACT	---	2	2	AY.75	0.000112
ORF7a	14	T14I	aCt	aTt	2	2	AY.78	0.003082
ORF7a	14	T14del	ACT	---	2	2	AY.9	0.000135
ORF7a	14	T14del	ACT	---	2	2	AY.9.2	0.000073
ORF7a	14	T14I	aCt	aTt	2	2	AY.98.1	0.000097
ORF7a	14	T14P	Act	Cct	1	2	B.1.1	0.000018
ORF7a	14	T14P	AcT	CcA	1	2	B.1.1	0.000018
ORF7a	14	T14T	acT	acC	2	2	B.1.1.255	0.006061
ORF7a	14	T14I	aCt	aTt	2	2	B.1.1.274	0.010101
ORF7a	14	T14I	aCt	aTt	2	2	B.1.1.306	0.000877
ORF7a	14	T14I	aCt	aTt	2	2	B.1.1.326	0.003521
ORF7a	14	T14I	aCt	aTt	2	2	B.1.1.37	0.000386
ORF7a	14	T14I	aCt	aTt	2	2	B.1.1.47	0.010695
ORF7a	14	T14T	acT	acG	1	2	B.1.1.519	0.00004
ORF7a	14	T14T	acT	acC	1	2	B.1.1.519	0.00004
ORF7a	14	T14del2	aCT	a--	1	2	B.1.1.7	0.000001
ORF7a	14	T14del2	ACt	--t	1	2	B.1.1.7	0.000001
ORF7a	14	T14I	aCt	aTt	2	2	B.1.111	0.00235
ORF7a	14	T14del	ACT	---	2	2	B.1.160	0.000062
ORF7a	14	T14I	aCt	aTt	2	2	B.1.160.30	0.005952
ORF7a	14	T14T	acT	acC	2	2	B.1.177	0.000026
ORF7a	14	T14I	aCt	aTt	2	2	B.1.177.42	0.001789
ORF7a	14	T14I	aCt	aTt	2	2	B.1.177.43	0.002954
ORF7a	14	T14del	ACT	---	2	2	B.1.177.86	0.000367
ORF7a	14	T14T	acT	acC	1	2	B.1.2	0.000009
ORF7a	14	T14T	acT	acG	1	2	B.1.2	0.000009
ORF7a	14	T14I	aCt	aTt	2	2	B.1.213	0.029851
ORF7a	14	T14I	aCt	aTt	2	2	B.1.236	0.004107
ORF7a	14	T14S	aCt	aGt	2	2	B.1.258	0.000133
ORF7a	14	T14del	ACT	---	2	2	B.1.258.11	0.000793
ORF7a	14	T14del	ACT	---	2	2	B.1.36	0.000292
ORF7a	14	T14del	ACT	---	2	2	B.1.36.38	0.003284
ORF7a	14	T14I	aCt	aTt	2	2	B.1.404	0.002604
ORF7a	14	T14I	aCt	aTt	2	2	B.1.416.1	0.003125
ORF7a	14	T14I	aCt	aTt	2	2	B.1.420	0.020833
ORF7a	14	T14N	aCt	aAt	2	2	B.1.429	0.000047
ORF7a	14	T14N	aCt	aAt	2	2	B.1.497	0.00063
ORF7a	14	T14I	aCt	aTt	2	2	B.1.517	0.000854
ORF7a	14	T14I	aCt	aTt	2	2	B.1.524	0.002813
ORF7a	14	T14del	ACT	---	2	2	B.1.525	0.000226
ORF7a	14	T14del	ACT	---	2	2	B.1.637	0.000146
ORF7a	14	T14I	aCt	aTt	2	2	B.6.6	0.001778
ORF7a	14	T14I	aCt	aTt	2	2	C.35	0.001548
ORF7a	14	T14I	aCt	aTt	2	2	P.1.12	0.000968
ORF7a	14	T14I	aCt	aTt	2	2	P.6	0.006289
ORF7a	14	T14del	ACT	---	2	2	Q.1	0.000253
ORF7a	14	T14del	ACT	---	2	2	R.1	0.00018
ORF7a	14	T14del	ACT	---	1	1	A	0.000387
ORF7a	14	T14I	aCt	aTt	1	1	A.1	0.000282
ORF7a	14	T14del	ACT	---	1	1	A.2	0.000662
ORF7a	14	T14I	aCt	aTt	1	1	A.2.5	0.000499
ORF7a	14	T14I	aCt	aTt	1	1	A.2.5.1	0.004808
ORF7a	14	T14I	aCt	aTt	1	1	A.27	0.001656
ORF7a	14	T14del	ACT	---	1	1	AD.1	0.004115
ORF7a	14	T14I	aCt	aTt	1	1	AE.5	0.018519
ORF7a	14	T14I	aCt	aTt	1	1	AF.1	0.037037
ORF7a	14	T14del	ACT	---	1	1	AK.1	0.012658
ORF7a	14	T14D	ACt	GAt	1	1	All	0
ORF7a	14	T14F	ACt	TTt	1	1	All	0
ORF7a	14	T14M	aCT	aTG	1	1	All	0
ORF7a	14	T14I	aCt	aTt	1	1	AU.2	0.002421
ORF7a	14	T14I	aCt	aTt	1	1	AU.3	0.00211
ORF7a	14	T14I	aCt	aTt	1	1	AY.1	0.000396
ORF7a	14	T14S	aCt	aGt	1	1	AY.100	0.000046
ORF7a	14	T14T	acT	acG	1	1	AY.102	0.000027
ORF7a	14	T14T	acT	acA	1	1	AY.103	0.000006
ORF7a	14	T14A	Act	Gct	1	1	AY.103	0.000006
ORF7a	14	T14I	aCt	aTt	1	1	AY.105	0.000643
ORF7a	14	T14S	aCt	aGt	1	1	AY.106	0.000335
ORF7a	14	T14del1	aCt	a-t	1	1	AY.108	0.001103
ORF7a	14	T14del	ACT	---	1	1	AY.108	0.001103
ORF7a	14	T14I	aCt	aTt	1	1	AY.108	0.001103
ORF7a	14	T14del	ACT	---	1	1	AY.109	0.00074
ORF7a	14	T14I	aCt	aTt	1	1	AY.110	0.000113
ORF7a	14	T14I	aCt	aTt	1	1	AY.111	0.000183
ORF7a	14	T14I	aCt	aTt	1	1	AY.114	0.000231
ORF7a	14	T14S	AcT	TcA	1	1	AY.116.1	0.000311
ORF7a	14	T14N	aCt	aAt	1	1	AY.118	0.000063
ORF7a	14	T14del	ACT	---	1	1	AY.120	0.000037
ORF7a	14	T14R	ACT	CGC	1	1	AY.120.1	0.000321
ORF7a	14	T14del	ACT	---	1	1	AY.120.1	0.000321
ORF7a	14	T14del	ACT	---	1	1	AY.121	0.000135
ORF7a	14	T14T	acT	acC	1	1	AY.14	0.000088
ORF7a	14	T14N	aCt	aAt	1	1	AY.20	0.000039
ORF7a	14	T14A	Act	Gct	1	1	AY.20	0.000039
ORF7a	14	T14I	aCt	aTt	1	1	AY.21	0.001898
ORF7a	14	T14del1	acT	ac-	1	1	AY.23	0.00007
ORF7a	14	T14T	acT	acC	1	1	AY.23.1	0.000417
ORF7a	14	T14I	aCt	aTt	1	1	AY.23.1	0.000417
ORF7a	14	T14I	aCt	aTt	1	1	AY.24	0.000431
ORF7a	14	T14S	aCt	aGt	1	1	AY.25	0.000006
ORF7a	14	T14T	acT	acC	1	1	AY.26	0.000028
ORF7a	14	T14N	aCt	aAt	1	1	AY.3	0.00001
ORF7a	14	T14A	Act	Gct	1	1	AY.3	0.00001
ORF7a	14	T14S	aCt	aGt	1	1	AY.3	0.00001
ORF7a	14	T14I	aCt	aTt	1	1	AY.32	0.000532
ORF7a	14	T14N	aCt	aAt	1	1	AY.33	0.000067
ORF7a	14	T14del	ACT	---	1	1	AY.34	0.000097
ORF7a	14	T14S	aCt	aGt	1	1	AY.34.1	0.00051
ORF7a	14	T14I	aCt	aTt	1	1	AY.38	0.000499
ORF7a	14	T14I	aCt	aTt	1	1	AY.39.1.1	0.000725
ORF7a	14	T14del	ACT	---	1	1	AY.4.2	0.000022
ORF7a	14	T14N	aCt	aAt	1	1	AY.4.5	0.000107
ORF7a	14	T14A	Act	Gct	1	1	AY.43	0.000004
ORF7a	14	T14F	ACt	TTt	1	1	AY.43	0.000004
ORF7a	14	T14del1	acT	ac-	1	1	AY.43	0.000004
ORF7a	14	T14S	Act	Tct	1	1	AY.43	0.000004
ORF7a	14	T14M	aCT	aTG	1	1	AY.44	0.000006
ORF7a	14	T14del	ACT	---	1	1	AY.45	0.000122
ORF7a	14	T14I	aCt	aTt	1	1	AY.46.1	0.001027
ORF7a	14	T14I	aCt	aTt	1	1	AY.46.2	0.000635
ORF7a	14	T14I	aCt	aTt	1	1	AY.46.5	0.000198
ORF7a	14	T14T	acT	acC	1	1	AY.47	0.000031
ORF7a	14	T14N	aCt	aAt	1	1	AY.5	0.000021
ORF7a	14	T14I	aCt	aTt	1	1	AY.5.4	0.000277
ORF7a	14	T14N	aCt	aAt	1	1	AY.5.4	0.000277
ORF7a	14	T14del	ACT	---	1	1	AY.54	0.000095
ORF7a	14	T14N	aCt	aAt	1	1	AY.54	0.000095
ORF7a	14	T14I	aCt	aTt	1	1	AY.55	0.000917
ORF7a	14	T14I	aCt	aTt	1	1	AY.57	0.000656
ORF7a	14	T14del	ACT	---	1	1	AY.61	0.000105
ORF7a	14	T14S	aCt	aGt	1	1	AY.61	0.000105
ORF7a	14	T14del	ACT	---	1	1	AY.66	0.00107
ORF7a	14	T14T	acT	acC	1	1	AY.67	0.000464
ORF7a	14	T14I	aCt	aTt	1	1	AY.7	0.000196
ORF7a	14	T14I	aCt	aTt	1	1	AY.73	0.000665
ORF7a	14	T14T	acT	acC	1	1	AY.75	0.000056
ORF7a	14	T14S	aCt	aGt	1	1	AY.75.1	0.00018
ORF7a	14	T14I	aCt	aTt	1	1	AY.76	0.004831
ORF7a	14	T14del	ACT	---	1	1	AY.79	0.001211
ORF7a	14	T14del	ACT	---	1	1	AY.84	0.000437
ORF7a	14	T14S	aCt	aGt	1	1	AY.84	0.000437
ORF7a	14	T14I	aCt	aTt	1	1	AY.84	0.000437
ORF7a	14	T14I	aCt	aTt	1	1	AY.89	0.004902
ORF7a	14	T14I	aCt	aTt	1	1	AY.90	0.000684
ORF7a	14	T14I	aCt	aTt	1	1	AY.91.1	0.004065
ORF7a	14	T14I	aCt	aTt	1	1	AY.92	0.000287
ORF7a	14	T14I	aCt	aTt	1	1	AY.94	0.000443
ORF7a	14	T14del	ACT	---	1	1	AY.94	0.000443
ORF7a	14	T14I	aCt	aTt	1	1	AY.95	0.000761
ORF7a	14	T14T	acT	acC	1	1	AY.98	0.000079
ORF7a	14	T14N	aCt	aAt	1	1	AY.98.1	0.000048
ORF7a	14	T14del	ACT	---	1	1	AY.99	0.001049
ORF7a	14	T14A	Act	Gct	1	1	B	0.000128
ORF7a	14	T14S	aCt	aGt	1	1	B.1	0.000009
ORF7a	14	T14T	acT	acC	1	1	B.1	0.000009
ORF7a	14	T14S	aCt	aGt	1	1	B.1.1	0.000018
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.1	0.000327
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.12	0.007463
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.132	0.014925
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.135	0.004695
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.192	0.002309
ORF7a	14	T14del	ACT	---	1	1	B.1.1.207	0.001182
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.216	0.00089
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.220	0.001859
ORF7a	14	T14del	ACT	---	1	1	B.1.1.222	0.000204
ORF7a	14	T14N	aCt	aAt	1	1	B.1.1.222	0.000204
ORF7a	14	T14del	ACT	---	1	1	B.1.1.25	0.000569
ORF7a	14	T14del	ACT	---	1	1	B.1.1.258	0.003257
ORF7a	14	T14T	acT	acC	1	1	B.1.1.258	0.003257
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.27	0.00565
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.270	0.010309
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.277	0.000759
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.279	0.001121
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.298	0.000862
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.303	0.002762
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.304	0.002809
ORF7a	14	T14T	acT	acC	1	1	B.1.1.306	0.000438
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.312	0.001912
ORF7a	14	T14T	acT	acA	1	1	B.1.1.318	0.000302
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.354	0.004386
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.368	0.003086
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.369	0.000446
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.375	0.011905
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.376	0.005952
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.383	0.0625
ORF7a	14	T14A	Act	Gct	1	1	B.1.1.39	0.00051
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.420	0.001006
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.429	0.004608
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.432	0.001266
ORF7a	14	T14N	aCt	aAt	1	1	B.1.1.434	0.000349
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.462	0.008621
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.486	0.001577
ORF7a	14	T14del1	acT	ac-	1	1	B.1.1.50	0.000679
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.507	0.008696
ORF7a	14	T14del	ACT	---	1	1	B.1.1.519	0.00004
ORF7a	14	T14del	ACT	---	1	1	B.1.1.522	0.017241
ORF7a	14	T14I	aCt	aTt	1	1	B.1.1.54	0.003021
ORF7a	14	T14D	ACt	GAt	1	1	B.1.1.7	0.000001
ORF7a	14	T14del1	acT	ac-	1	1	B.1.1.7	0.000001
ORF7a	14	T14del	ACT	---	1	1	B.1.115	0.021739
ORF7a	14	T14I	aCt	aTt	1	1	B.1.126	0.001276
ORF7a	14	T14A	Act	Gct	1	1	B.1.128	0.000635
ORF7a	14	T14I	aCt	aTt	1	1	B.1.134	0.005464
ORF7a	14	T14I	aCt	aTt	1	1	B.1.139	0.000733
ORF7a	14	T14I	aCt	aTt	1	1	B.1.147	0.000756
ORF7a	14	T14T	acT	acC	1	1	B.1.160	0.000031
ORF7a	14	T14del2	aCT	a--	1	1	B.1.160	0.000031
ORF7a	14	T14del2	aCT	a--	1	1	B.1.160.14	0.002119
ORF7a	14	T14I	aCt	aTt	1	1	B.1.160.28	0.002924
ORF7a	14	T14I	aCt	aTt	1	1	B.1.160.29	0.004219
ORF7a	14	T14I	aCt	aTt	1	1	B.1.160.32	0.004292
ORF7a	14	T14I	aCt	aTt	1	1	B.1.160.33	0.004425
ORF7a	14	T14I	aCt	aTt	1	1	B.1.160.9	0.007194
ORF7a	14	T14del2	ACt	--t	1	1	B.1.161	0.017241
ORF7a	14	T14I	aCt	aTt	1	1	B.1.177.12	0.000152
ORF7a	14	T14I	aCt	aTt	1	1	B.1.177.16	0.000664
ORF7a	14	T14I	aCt	aTt	1	1	B.1.177.2	0.004545
ORF7a	14	T14I	aCt	aTt	1	1	B.1.177.21	0.000076
ORF7a	14	T14I	aCt	aTt	1	1	B.1.177.23	0.003236
ORF7a	14	T14I	aCt	aTt	1	1	B.1.177.30	0.002513
ORF7a	14	T14I	aCt	aTt	1	1	B.1.177.31	0.011494
ORF7a	14	T14I	aCt	aTt	1	1	B.1.177.33	0.001645
ORF7a	14	T14T	acT	acC	1	1	B.1.177.44	0.000519
ORF7a	14	T14I	aCt	aTt	1	1	B.1.177.5	0.001242
ORF7a	14	T14I	aCt	aTt	1	1	B.1.177.52	0.001757
ORF7a	14	T14T	acT	acC	1	1	B.1.177.57	0.000281
ORF7a	14	T14V	ACt	GTt	1	1	B.1.177.63	0.002703
ORF7a	14	T14I	aCt	aTt	1	1	B.1.177.7	0.000165
ORF7a	14	T14I	aCt	aTt	1	1	B.1.177.77	0.000726
ORF7a	14	T14del	ACT	---	1	1	B.1.177.81	0.000189
ORF7a	14	T14I	aCt	aTt	1	1	B.1.177.82	0.000477
ORF7a	14	T14del1	acT	ac-	1	1	B.1.2	0.000009
ORF7a	14	T14S	aCt	aGt	1	1	B.1.2	0.000009
ORF7a	14	T14I	aCt	aTt	1	1	B.1.206	0.000816
ORF7a	14	T14del	ACT	---	1	1	B.1.214.2	0.0006
ORF7a	14	T14I	aCt	aTt	1	1	B.1.22	0.001318
ORF7a	14	T14del	ACT	---	1	1	B.1.221	0.000071
ORF7a	14	T14N	aCt	aAt	1	1	B.1.221.2	0.004016
ORF7a	14	T14I	aCt	aTt	1	1	B.1.221.3	0.000833
ORF7a	14	T14I	aCt	aTt	1	1	B.1.222	0.001692
ORF7a	14	T14I	aCt	aTt	1	1	B.1.239	0.001221
ORF7a	14	T14del	ACT	---	1	1	B.1.240	0.000216
ORF7a	14	T14I	aCt	aTt	1	1	B.1.241	0.000812
ORF7a	14	T14A	Act	Gct	1	1	B.1.243	0.00007
ORF7a	14	T14I	aCt	aTt	1	1	B.1.247	0.014925
ORF7a	14	T14I	aCt	aTt	1	1	B.1.251	0.021739
ORF7a	14	T14I	aCt	aTt	1	1	B.1.260	0.003344
ORF7a	14	T14I	aCt	aTt	1	1	B.1.265	0.001271
ORF7a	14	T14I	aCt	aTt	1	1	B.1.320	0.001245
ORF7a	14	T14I	aCt	aTt	1	1	B.1.326	0.007576
ORF7a	14	T14I	aCt	aTt	1	1	B.1.329	0.000608
ORF7a	14	T14I	aCt	aTt	1	1	B.1.332	0.003497
ORF7a	14	T14I	aCt	aTt	1	1	B.1.349	0.000715
ORF7a	14	T14T	acT	acG	1	1	B.1.351	0.00003
ORF7a	14	T14I	aCt	aTt	1	1	B.1.351.3	0.000876
ORF7a	14	T14I	aCt	aTt	1	1	B.1.354	0.043478
ORF7a	14	T14I	aCt	aTt	1	1	B.1.36.10	0.004785
ORF7a	14	T14I	aCt	aTt	1	1	B.1.36.17	0.000494
ORF7a	14	T14I	aCt	aTt	1	1	B.1.36.22	0.001208
ORF7a	14	T14I	aCt	aTt	1	1	B.1.36.35	0.002604
ORF7a	14	T14A	Act	Gct	1	1	B.1.36.8	0.001
ORF7a	14	T14I	aCt	aTt	1	1	B.1.367	0.000792
ORF7a	14	T14T	acT	acC	1	1	B.1.380	0.006623
ORF7a	14	T14I	aCt	aTt	1	1	B.1.381	0.007812
ORF7a	14	T14A	Act	Gct	1	1	B.1.389	0.001002
ORF7a	14	T14I	aCt	aTt	1	1	B.1.396	0.000706
ORF7a	14	T14I	aCt	aTt	1	1	B.1.399	0.001934
ORF7a	14	T14I	aCt	aTt	1	1	B.1.400	0.000429
ORF7a	14	T14I	aCt	aTt	1	1	B.1.411	0.003704
ORF7a	14	T14del	ACT	---	1	1	B.1.427	0.00005
ORF7a	14	T14I	aCt	aTt	1	1	B.1.428.3	0.012821
ORF7a	14	T14A	Act	Gct	1	1	B.1.429	0.000024
ORF7a	14	T14del	ACT	---	1	1	B.1.433	0.003195
ORF7a	14	T14I	aCt	aTt	1	1	B.1.462	0.007246
ORF7a	14	T14del	ACT	---	1	1	B.1.466.2	0.000391
ORF7a	14	T14del	ACT	---	1	1	B.1.468	0.005714
ORF7a	14	T14N	aCt	aAt	1	1	B.1.470	0.001404
ORF7a	14	T14I	aCt	aTt	1	1	B.1.470	0.001404
ORF7a	14	T14del	ACT	---	1	1	B.1.470	0.001404
ORF7a	14	T14I	aCt	aTt	1	1	B.1.480	0.002488
ORF7a	14	T14I	aCt	aTt	1	1	B.1.499	0.00105
ORF7a	14	T14I	aCt	aTt	1	1	B.1.503	0.002488
ORF7a	14	T14I	aCt	aTt	1	1	B.1.509	0.000866
ORF7a	14	T14I	aCt	aTt	1	1	B.1.515	0.014493
ORF7a	14	T14S	aCt	aGt	1	1	B.1.526	0.000024
ORF7a	14	T14I	aCt	aTt	1	1	B.1.533	0.009615
ORF7a	14	T14I	aCt	aTt	1	1	B.1.564	0.000426
ORF7a	14	T14I	aCt	aTt	1	1	B.1.567	0.003333
ORF7a	14	T14I	aCt	aTt	1	1	B.1.568	0.001111
ORF7a	14	T14I	aCt	aTt	1	1	B.1.578	0.017857
ORF7a	14	T14N	aCt	aAt	1	1	B.1.580	0.004065
ORF7a	14	T14I	aCt	aTt	1	1	B.1.580	0.004065
ORF7a	14	T14T	acT	acA	1	1	B.1.595	0.000261
ORF7a	14	T14I	aCt	aTt	1	1	B.1.598	0.016949
ORF7a	14	T14I	aCt	aTt	1	1	B.1.609	0.000479
ORF7a	14	T14del	ACT	---	1	1	B.1.617.1	0.000129
ORF7a	14	T14del	ACT	---	1	1	B.1.617.3	0.002985
ORF7a	14	T14I	aCt	aTt	1	1	B.1.620	0.000946
ORF7a	14	T14del	ACT	---	1	1	B.1.620	0.000946
ORF7a	14	T14T	acT	acG	1	1	B.1.621	0.000089
ORF7a	14	T14del	ACT	---	1	1	B.1.621	0.000089
ORF7a	14	T14I	aCt	aTt	1	1	B.1.621.1	0.000506
ORF7a	14	T14I	aCt	aTt	1	1	B.1.625	0.002353
ORF7a	14	T14del	ACT	---	1	1	B.1.628	0.000352
ORF7a	14	T14I	aCt	aTt	1	1	B.1.630	0.005236
ORF7a	14	T14del	ACT	---	1	1	B.1.630	0.005236
ORF7a	14	T14N	aCt	aAt	1	1	B.1.636	0.006711
ORF7a	14	T14N	aCt	aAt	1	1	B.1.9.4	0.006135
ORF7a	14	T14I	aCt	aTt	1	1	B.1.9.5	0.005682
ORF7a	14	T14I	aCt	aTt	1	1	B.20	0.023256
ORF7a	14	T14I	aCt	aTt	1	1	C.1	0.002392
ORF7a	14	T14T	acT	acG	1	1	C.14	0.004329
ORF7a	14	T14I	aCt	aTt	1	1	C.33	0.058824
ORF7a	14	T14del	ACT	---	1	1	C.36.3	0.000567
ORF7a	14	T14N	aCt	aAt	1	1	C.37.1	0.002618
ORF7a	14	T14I	aCt	aTt	1	1	C.8	0.004464
ORF7a	14	T14I	aCt	aTt	1	1	N.3	0.005814
ORF7a	14	T14T	acT	acG	1	1	P.1	0.000016
ORF7a	14	T14A	Act	Gct	1	1	P.1	0.000016
ORF7a	14	T14S	aCt	aGt	1	1	P.1.1	0.000318
ORF7a	14	T14I	aCt	aTt	1	1	P.1.1	0.000318
ORF7a	14	T14I	aCt	aTt	1	1	P.1.13	0.000898
ORF7a	14	T14S	Act	Tct	1	1	P.1.17	0.000162
ORF7a	14	T14I	aCt	aTt	1	1	P.1.4	0.000977
ORF7a	14	T14N	aCt	aAt	1	1	P.1.4	0.000977
ORF7a	14	T14V	ACt	GTt	1	1	P.1.7	0.000319
ORF7a	14	T14del	ACT	---	1	1	P.2	0.000187
ORF7a	14	T14T	acT	acC	1	1	Q.1	0.000126
ORF7a	14	T14I	aCt	aTt	1	1	Q.1	0.000126
ORF7a	14	T14del	ACT	---	1	1	Q.5	0.016949
ORF7a	14	T14del	ACT	---	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.