CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 14 | T14I | nonsyn | aCt | aTt | 16818 | 16818 | 1 | 27433-27435 | |
ORF7a | 14 | T14del | del | ACT | --- | 6654 | 6654 | 1 | 27433-27435 | |
ORF7a | 14 | T14N | nonsyn | aCt | aAt | 365 | 365 | 1 | 27433-27435 | |
ORF7a | 14 | T14T | syn | acT | acC | 218 | 163 | 0.747706 | 27433-27435 | |
ORF7a | 14 | T14T | syn | acT | acG | 218 | 50 | 0.229358 | 27433-27435 | |
ORF7a | 14 | T14T | syn | acT | acA | 218 | 5 | 0.0229358 | 27433-27435 | |
ORF7a | 14 | T14S | nonsyn | aCt | aGt | 145 | 138 | 0.951724 | 27433-27435 | |
ORF7a | 14 | T14S | nonsyn | Act | Tct | 145 | 4 | 0.0275862 | 27433-27435 | |
ORF7a | 14 | T14S | nonsyn | aCT | aGC | 145 | 2 | 0.0137931 | 27433-27435 | |
ORF7a | 14 | T14S | nonsyn | AcT | TcA | 145 | 1 | 0.00689655 | 27433-27435 | |
ORF7a | 14 | T14A | nonsyn | Act | Gct | 42 | 42 | 1 | 27433-27435 | |
ORF7a | 14 | T14P | nonsyn | Act | Cct | 26 | 25 | 0.961538 | 27433-27435 | |
ORF7a | 14 | T14P | nonsyn | AcT | CcA | 26 | 1 | 0.0384615 | 27433-27435 | |
ORF7a | 14 | T14del1 | del | acT | ac- | 13 | 5 | 0.384615 | 27433-27435 | |
ORF7a | 14 | T14del1 | del | ACT | -NN | 13 | 4 | 0.307692 | 27433-27435 | |
ORF7a | 14 | T14del1 | del | aCt | a-t | 13 | 2 | 0.153846 | 27433-27435 | |
ORF7a | 14 | T14del1 | del | ACt | -Nt | 13 | 2 | 0.153846 | 27433-27435 | |
ORF7a | 14 | T14del2 | del | aCT | a-- | 5 | 3 | 0.6 | 27433-27435 | |
ORF7a | 14 | T14del2 | del | ACt | --t | 5 | 2 | 0.4 | 27433-27435 | |
ORF7a | 14 | T14R | nonsyn | aCT | aGG | 3 | 2 | 0.666667 | 27433-27435 | |
ORF7a | 14 | T14R | nonsyn | ACT | CGC | 3 | 1 | 0.333333 | 27433-27435 | |
ORF7a | 14 | T14V | nonsyn | ACt | GTt | 2 | 2 | 1 | 27433-27435 | |
ORF7a | 14 | T14M | nonsyn | aCT | aTG | 1 | 1 | 1 | 27433-27435 | |
ORF7a | 14 | T14F | nonsyn | ACt | TTt | 1 | 1 | 1 | 27433-27435 | |
ORF7a | 14 | T14D | nonsyn | ACt | GAt | 1 | 1 | 1 | 27433-27435 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 14 | T14I | aCt | aTt | 16818 | 16818 | All | 0.003217 |
ORF7a | 14 | T14del | ACT | --- | 6654 | 6654 | All | 0.001273 |
ORF7a | 14 | T14del | ACT | --- | 5920 | 5920 | B.1.1.7 | 0.0053 |
ORF7a | 14 | T14I | aCt | aTt | 2676 | 2676 | B.1.160 | 0.083458 |
ORF7a | 14 | T14I | aCt | aTt | 2111 | 2111 | AY.4 | 0.003286 |
ORF7a | 14 | T14I | aCt | aTt | 2077 | 2077 | B.1.1.7 | 0.001859 |
ORF7a | 14 | T14I | aCt | aTt | 1274 | 1274 | B.1.409 | 0.995313 |
ORF7a | 14 | T14I | aCt | aTt | 1059 | 1059 | B.1.160.16 | 0.984201 |
ORF7a | 14 | T14I | aCt | aTt | 662 | 662 | AP.1 | 0.993994 |
ORF7a | 14 | T14I | aCt | aTt | 462 | 462 | B.1.36.21 | 0.99784 |
ORF7a | 14 | T14I | aCt | aTt | 441 | 441 | B.1.160.14 | 0.934322 |
ORF7a | 14 | T14N | aCt | aAt | 365 | 365 | All | 0.00007 |
ORF7a | 14 | T14I | aCt | aTt | 345 | 345 | B.1.617.2 | 0.001299 |
ORF7a | 14 | T14I | aCt | aTt | 299 | 299 | AY.103 | 0.001857 |
ORF7a | 14 | T14I | aCt | aTt | 295 | 295 | B.1.2 | 0.002598 |
ORF7a | 14 | T14I | aCt | aTt | 278 | 278 | AM.4 | 0.992857 |
ORF7a | 14 | T14I | aCt | aTt | 258 | 258 | AY.44 | 0.00157 |
ORF7a | 14 | T14T | acT | acC | 163 | 218 | All | 0.000031 |
ORF7a | 14 | T14T | acT | acG | 50 | 218 | All | 0.00001 |
ORF7a | 14 | T14T | acT | acA | 5 | 218 | All | 0.000001 |
ORF7a | 14 | T14I | aCt | aTt | 193 | 193 | B.1 | 0.001768 |
ORF7a | 14 | T14I | aCt | aTt | 193 | 193 | B.1.160.15 | 0.955446 |
ORF7a | 14 | T14del | ACT | --- | 179 | 179 | B.1.177.21 | 0.013688 |
ORF7a | 14 | T14I | aCt | aTt | 176 | 176 | AY.3 | 0.001751 |
ORF7a | 14 | T14I | aCt | aTt | 172 | 172 | AY.43 | 0.000762 |
ORF7a | 14 | T14I | aCt | aTt | 169 | 169 | AY.74 | 0.019544 |
ORF7a | 14 | T14I | aCt | aTt | 168 | 168 | B.1.160.11 | 0.96 |
ORF7a | 14 | T14I | aCt | aTt | 163 | 163 | B.1.626 | 0.931429 |
ORF7a | 14 | T14I | aCt | aTt | 162 | 162 | B.1.177 | 0.002133 |
ORF7a | 14 | T14I | aCt | aTt | 155 | 155 | B.1.160.12 | 0.99359 |
ORF7a | 14 | T14S | aCt | aGt | 138 | 145 | All | 0.000026 |
ORF7a | 14 | T14S | Act | Tct | 4 | 145 | All | 0.000001 |
ORF7a | 14 | T14S | aCT | aGC | 2 | 145 | All | 0 |
ORF7a | 14 | T14S | AcT | TcA | 1 | 145 | All | 0 |
ORF7a | 14 | T14I | aCt | aTt | 142 | 142 | AY.4.5 | 0.015264 |
ORF7a | 14 | T14del | ACT | --- | 139 | 139 | AY.4 | 0.000216 |
ORF7a | 14 | T14I | aCt | aTt | 132 | 132 | B.1.429 | 0.003106 |
ORF7a | 14 | T14I | aCt | aTt | 130 | 130 | B.1.36.18 | 0.054622 |
ORF7a | 14 | T14N | aCt | aAt | 116 | 116 | AY.44 | 0.000706 |
ORF7a | 14 | T14I | aCt | aTt | 115 | 115 | AB.1 | 0.942623 |
ORF7a | 14 | T14I | aCt | aTt | 102 | 102 | AY.25 | 0.000614 |
ORF7a | 14 | T14I | aCt | aTt | 91 | 91 | B.1.258 | 0.006056 |
ORF7a | 14 | T14I | aCt | aTt | 90 | 90 | P.1 | 0.001418 |
ORF7a | 14 | T14I | aCt | aTt | 89 | 89 | AY.120.2.1 | 0.044345 |
ORF7a | 14 | T14I | aCt | aTt | 88 | 88 | B.1.526 | 0.002068 |
ORF7a | 14 | T14I | aCt | aTt | 81 | 81 | P.1.7 | 0.025862 |
ORF7a | 14 | T14S | aCt | aGt | 74 | 75 | B.1.1.7 | 0.000066 |
ORF7a | 14 | T14S | Act | Tct | 1 | 75 | B.1.1.7 | 0.000001 |
ORF7a | 14 | T14I | aCt | aTt | 70 | 70 | B.1.1 | 0.00127 |
ORF7a | 14 | T14N | aCt | aAt | 66 | 66 | B.1.1.7 | 0.000059 |
ORF7a | 14 | T14I | aCt | aTt | 63 | 63 | B.1.243 | 0.004384 |
ORF7a | 14 | T14I | aCt | aTt | 58 | 58 | AY.29 | 0.000915 |
ORF7a | 14 | T14T | acT | acC | 43 | 49 | B.1.1.7 | 0.000038 |
ORF7a | 14 | T14T | acT | acG | 6 | 49 | B.1.1.7 | 0.000005 |
ORF7a | 14 | T14I | aCt | aTt | 48 | 48 | AY.102 | 0.001273 |
ORF7a | 14 | T14I | aCt | aTt | 46 | 46 | AY.3.1 | 0.003922 |
ORF7a | 14 | T14I | aCt | aTt | 44 | 44 | AY.20 | 0.00171 |
ORF7a | 14 | T14N | aCt | aAt | 44 | 44 | AY.4 | 0.000068 |
ORF7a | 14 | T14I | aCt | aTt | 44 | 44 | AY.47 | 0.001369 |
ORF7a | 14 | T14A | Act | Gct | 42 | 42 | All | 0.000008 |
ORF7a | 14 | T14I | aCt | aTt | 36 | 36 | B.1.160.13 | 1 |
ORF7a | 14 | T14I | aCt | aTt | 35 | 35 | AY.23 | 0.002441 |
ORF7a | 14 | T14I | aCt | aTt | 35 | 35 | B.1.221 | 0.002486 |
ORF7a | 14 | T14I | aCt | aTt | 35 | 35 | B.1.351 | 0.00104 |
ORF7a | 14 | T14I | aCt | aTt | 35 | 35 | B.1.351.2 | 0.01059 |
ORF7a | 14 | T14I | aCt | aTt | 34 | 34 | AY.26 | 0.000963 |
ORF7a | 14 | T14del | ACT | --- | 33 | 33 | B.1.617.2 | 0.000124 |
ORF7a | 14 | T14I | aCt | aTt | 32 | 32 | B.1.177.8 | 0.024078 |
ORF7a | 14 | T14I | aCt | aTt | 31 | 31 | AY.39 | 0.000766 |
ORF7a | 14 | T14I | aCt | aTt | 29 | 29 | B.1.428.2 | 0.966667 |
ORF7a | 14 | T14I | aCt | aTt | 27 | 27 | AY.75 | 0.001513 |
ORF7a | 14 | T14I | aCt | aTt | 27 | 27 | B.1.1.519 | 0.001072 |
ORF7a | 14 | T14P | Act | Cct | 25 | 26 | All | 0.000005 |
ORF7a | 14 | T14P | AcT | CcA | 1 | 26 | All | 0 |
ORF7a | 14 | T14I | aCt | aTt | 26 | 26 | AY.120 | 0.000967 |
ORF7a | 14 | T14I | aCt | aTt | 26 | 26 | AY.9.1 | 0.002177 |
ORF7a | 14 | T14N | aCt | aAt | 25 | 25 | B.1.2 | 0.00022 |
ORF7a | 14 | T14I | aCt | aTt | 25 | 25 | C.37 | 0.002902 |
ORF7a | 14 | T14del | ACT | --- | 24 | 24 | AY.3 | 0.000239 |
ORF7a | 14 | T14I | aCt | aTt | 24 | 24 | B.1.577 | 0.016495 |
ORF7a | 14 | T14I | aCt | aTt | 24 | 24 | Q.8 | 0.003958 |
ORF7a | 14 | T14T | acT | acC | 20 | 23 | AY.4 | 0.000031 |
ORF7a | 14 | T14T | acT | acG | 3 | 23 | AY.4 | 0.000005 |
ORF7a | 14 | T14I | aCt | aTt | 23 | 23 | B.1.177.44 | 0.011936 |
ORF7a | 14 | T14I | aCt | aTt | 23 | 23 | B.1.369 | 0.00656 |
ORF7a | 14 | T14I | aCt | aTt | 22 | 22 | B.1.1.424 | 1 |
ORF7a | 14 | T14I | aCt | aTt | 22 | 22 | B.1.426 | 0.0222 |
ORF7a | 14 | T14T | acT | acC | 22 | 22 | B.1.429 | 0.000518 |
ORF7a | 14 | T14del | ACT | --- | 21 | 21 | AY.25 | 0.000126 |
ORF7a | 14 | T14del | ACT | --- | 21 | 21 | AY.29 | 0.000331 |
ORF7a | 14 | T14I | aCt | aTt | 21 | 21 | AY.46.4 | 0.003455 |
ORF7a | 14 | T14del | ACT | --- | 19 | 19 | AY.43 | 0.000084 |
ORF7a | 14 | T14I | aCt | aTt | 19 | 19 | B.1.258.11 | 0.007531 |
ORF7a | 14 | T14I | aCt | aTt | 19 | 19 | B.1.433 | 0.060703 |
ORF7a | 14 | T14I | aCt | aTt | 19 | 19 | B.1.466.1 | 0.136691 |
ORF7a | 14 | T14I | aCt | aTt | 19 | 19 | B.1.621 | 0.001682 |
ORF7a | 14 | T14I | aCt | aTt | 19 | 19 | C.36.3 | 0.010777 |
ORF7a | 14 | T14P | Act | Cct | 18 | 18 | B.1.1.7 | 0.000016 |
ORF7a | 14 | T14I | aCt | aTt | 18 | 18 | B.1.177.18 | 0.020882 |
ORF7a | 14 | T14I | aCt | aTt | 17 | 17 | AY.33 | 0.001135 |
ORF7a | 14 | T14del | ACT | --- | 16 | 16 | AY.44 | 0.000097 |
ORF7a | 14 | T14I | aCt | aTt | 16 | 16 | AY.54 | 0.001526 |
ORF7a | 14 | T14I | aCt | aTt | 16 | 16 | AY.9 | 0.001082 |
ORF7a | 14 | T14I | aCt | aTt | 15 | 15 | AY.119 | 0.00053 |
ORF7a | 14 | T14I | aCt | aTt | 15 | 15 | AY.4.2 | 0.000325 |
ORF7a | 14 | T14I | aCt | aTt | 15 | 15 | AY.5 | 0.00031 |
ORF7a | 14 | T14I | aCt | aTt | 15 | 15 | B.1.36 | 0.002189 |
ORF7a | 14 | T14I | aCt | aTt | 14 | 14 | AY.100 | 0.000644 |
ORF7a | 14 | T14del | ACT | --- | 14 | 14 | AY.103 | 0.000087 |
ORF7a | 14 | T14I | aCt | aTt | 14 | 14 | AY.42 | 0.000563 |
ORF7a | 14 | T14I | aCt | aTt | 14 | 14 | AY.61 | 0.001467 |
ORF7a | 14 | T14del | ACT | --- | 14 | 14 | B.1 | 0.000128 |
ORF7a | 14 | T14N | aCt | aAt | 14 | 14 | B.1.177 | 0.000184 |
ORF7a | 14 | T14I | aCt | aTt | 14 | 14 | B.1.427 | 0.000707 |
ORF7a | 14 | T14N | aCt | aAt | 14 | 14 | B.1.617.2 | 0.000053 |
ORF7a | 14 | T14del1 | acT | ac- | 5 | 13 | All | 0.000001 |
ORF7a | 14 | T14del1 | ACT | -NN | 4 | 13 | All | 0.000001 |
ORF7a | 14 | T14del1 | aCt | a-t | 2 | 13 | All | 0 |
ORF7a | 14 | T14del1 | ACt | -Nt | 2 | 13 | All | 0 |
ORF7a | 14 | T14S | aCt | aGt | 13 | 13 | AY.39.1 | 0.000515 |
ORF7a | 14 | T14S | aCt | aGt | 13 | 13 | AY.4 | 0.00002 |
ORF7a | 14 | T14I | aCt | aTt | 13 | 13 | AY.6 | 0.000535 |
ORF7a | 14 | T14I | aCt | aTt | 13 | 13 | B.1.1.214 | 0.000721 |
ORF7a | 14 | T14del | ACT | --- | 12 | 12 | AY.39 | 0.000297 |
ORF7a | 14 | T14I | aCt | aTt | 12 | 12 | AY.98 | 0.000948 |
ORF7a | 14 | T14del | ACT | --- | 12 | 12 | B.1.1.214 | 0.000665 |
ORF7a | 14 | T14T | acT | acG | 12 | 12 | B.1.526 | 0.000282 |
ORF7a | 14 | T14I | aCt | aTt | 12 | 12 | P.1.16 | 0.004489 |
ORF7a | 14 | T14I | aCt | aTt | 11 | 11 | AY.41 | 0.003233 |
ORF7a | 14 | T14T | acT | acC | 10 | 11 | AY.44 | 0.000061 |
ORF7a | 14 | T14T | acT | acG | 1 | 11 | AY.44 | 0.000006 |
ORF7a | 14 | T14I | aCt | aTt | 11 | 11 | AY.46.6 | 0.000794 |
ORF7a | 14 | T14I | aCt | aTt | 11 | 11 | AY.75.1 | 0.001983 |
ORF7a | 14 | T14I | aCt | aTt | 11 | 11 | B.1.637 | 0.000804 |
ORF7a | 14 | T14I | aCt | aTt | 10 | 10 | AY.116 | 0.002868 |
ORF7a | 14 | T14I | aCt | aTt | 10 | 10 | B.1.1.222 | 0.00204 |
ORF7a | 14 | T14del | ACT | --- | 10 | 10 | B.1.2 | 0.000088 |
ORF7a | 14 | T14I | aCt | aTt | 10 | 10 | B.1.258.17 | 0.00104 |
ORF7a | 14 | T14I | aCt | aTt | 10 | 10 | B.1.582 | 0.004907 |
ORF7a | 14 | T14I | aCt | aTt | 10 | 10 | C.23 | 0.05814 |
ORF7a | 14 | T14del | ACT | --- | 10 | 10 | P.1 | 0.000158 |
ORF7a | 14 | T14I | aCt | aTt | 9 | 9 | AY.109 | 0.006657 |
ORF7a | 14 | T14I | aCt | aTt | 9 | 9 | AY.113 | 0.001282 |
ORF7a | 14 | T14I | aCt | aTt | 9 | 9 | AY.59 | 0.004767 |
ORF7a | 14 | T14I | aCt | aTt | 9 | 9 | AY.9.2 | 0.000331 |
ORF7a | 14 | T14I | aCt | aTt | 9 | 9 | B | 0.00115 |
ORF7a | 14 | T14I | aCt | aTt | 9 | 9 | B.1.1.28 | 0.002801 |
ORF7a | 14 | T14del | ACT | --- | 9 | 9 | B.1.1.284 | 0.000967 |
ORF7a | 14 | T14I | aCt | aTt | 9 | 9 | B.1.83 | 0.138462 |
ORF7a | 14 | T14del | ACT | --- | 9 | 9 | C.8 | 0.040179 |
ORF7a | 14 | T14N | aCt | aAt | 8 | 8 | AY.25 | 0.000048 |
ORF7a | 14 | T14del | ACT | --- | 8 | 8 | B.1.177 | 0.000105 |
ORF7a | 14 | T14I | aCt | aTt | 8 | 8 | B.1.177.4 | 0.001688 |
ORF7a | 14 | T14I | aCt | aTt | 8 | 8 | B.1.311 | 0.002197 |
ORF7a | 14 | T14I | aCt | aTt | 8 | 8 | B.1.438.1 | 0.000858 |
ORF7a | 14 | T14S | aCt | aGt | 7 | 8 | B.1.617.2 | 0.000026 |
ORF7a | 14 | T14S | Act | Tct | 1 | 8 | B.1.617.2 | 0.000004 |
ORF7a | 14 | T14I | aCt | aTt | 8 | 8 | B.1.619 | 0.006969 |
ORF7a | 14 | T14I | aCt | aTt | 8 | 8 | Q.4 | 0.003638 |
ORF7a | 14 | T14N | aCt | aAt | 7 | 7 | AY.117 | 0.000592 |
ORF7a | 14 | T14del | ACT | --- | 7 | 7 | AY.118 | 0.000439 |
ORF7a | 14 | T14T | acT | acG | 4 | 7 | AY.3 | 0.00004 |
ORF7a | 14 | T14T | acT | acC | 2 | 7 | AY.3 | 0.00002 |
ORF7a | 14 | T14T | acT | acA | 1 | 7 | AY.3 | 0.00001 |
ORF7a | 14 | T14I | aCt | aTt | 7 | 7 | AY.34 | 0.000679 |
ORF7a | 14 | T14del1 | ACT | -NN | 4 | 7 | AY.44 | 0.000024 |
ORF7a | 14 | T14del1 | ACt | -Nt | 2 | 7 | AY.44 | 0.000012 |
ORF7a | 14 | T14del1 | aCt | a-t | 1 | 7 | AY.44 | 0.000006 |
ORF7a | 14 | T14I | aCt | aTt | 7 | 7 | AY.99.2 | 0.000645 |
ORF7a | 14 | T14N | aCt | aAt | 7 | 7 | B.1 | 0.000064 |
ORF7a | 14 | T14I | aCt | aTt | 7 | 7 | B.1.258.3 | 0.011725 |
ORF7a | 14 | T14I | aCt | aTt | 7 | 7 | B.1.36.1 | 0.007982 |
ORF7a | 14 | T14I | aCt | aTt | 7 | 7 | B.1.408 | 0.02583 |
ORF7a | 14 | T14T | acT | acC | 5 | 7 | B.1.617.2 | 0.000019 |
ORF7a | 14 | T14T | acT | acG | 2 | 7 | B.1.617.2 | 0.000008 |
ORF7a | 14 | T14del | ACT | --- | 7 | 7 | C.37 | 0.000812 |
ORF7a | 14 | T14I | aCt | aTt | 7 | 7 | P.1.14 | 0.000335 |
ORF7a | 14 | T14T | acT | acC | 4 | 6 | 0.222222 | |
ORF7a | 14 | T14T | acT | acG | 2 | 6 | 0.111111 | |
ORF7a | 14 | T14I | aCt | aTt | 6 | 6 | AY.117 | 0.000507 |
ORF7a | 14 | T14T | acT | acC | 6 | 6 | AY.120 | 0.000223 |
ORF7a | 14 | T14del | ACT | --- | 6 | 6 | AY.35 | 0.001398 |
ORF7a | 14 | T14T | acT | acC | 6 | 6 | AY.46 | 0.000624 |
ORF7a | 14 | T14del | ACT | --- | 6 | 6 | AY.47 | 0.000187 |
ORF7a | 14 | T14I | aCt | aTt | 6 | 6 | B.1.1.25 | 0.003411 |
ORF7a | 14 | T14N | aCt | aAt | 6 | 6 | B.1.1.28 | 0.001867 |
ORF7a | 14 | T14I | aCt | aTt | 6 | 6 | B.1.1.33 | 0.002525 |
ORF7a | 14 | T14A | Act | Gct | 6 | 6 | B.1.1.7 | 0.000005 |
ORF7a | 14 | T14I | aCt | aTt | 6 | 6 | B.1.177.56 | 0.004005 |
ORF7a | 14 | T14I | aCt | aTt | 6 | 6 | B.1.177.81 | 0.001136 |
ORF7a | 14 | T14del | ACT | --- | 6 | 6 | B.1.526 | 0.000141 |
ORF7a | 14 | T14I | aCt | aTt | 6 | 6 | B.1.596 | 0.000523 |
ORF7a | 14 | T14N | aCt | aAt | 6 | 6 | B.1.596 | 0.000523 |
ORF7a | 14 | T14I | aCt | aTt | 6 | 6 | B.1.617.1 | 0.000774 |
ORF7a | 14 | T14A | Act | Gct | 6 | 6 | B.1.617.2 | 0.000023 |
ORF7a | 14 | T14del | ACT | --- | 6 | 6 | B.40 | 0.002186 |
ORF7a | 14 | T14I | aCt | aTt | 6 | 6 | P.1.15 | 0.001394 |
ORF7a | 14 | T14del2 | aCT | a-- | 3 | 5 | All | 0.000001 |
ORF7a | 14 | T14del2 | ACt | --t | 2 | 5 | All | 0 |
ORF7a | 14 | T14T | acT | acC | 5 | 5 | AY.20 | 0.000194 |
ORF7a | 14 | T14T | acT | acC | 3 | 5 | AY.25 | 0.000018 |
ORF7a | 14 | T14T | acT | acG | 1 | 5 | AY.25 | 0.000006 |
ORF7a | 14 | T14T | acT | acA | 1 | 5 | AY.25 | 0.000006 |
ORF7a | 14 | T14del | ACT | --- | 5 | 5 | AY.26 | 0.000142 |
ORF7a | 14 | T14I | aCt | aTt | 5 | 5 | AY.36 | 0.000741 |
ORF7a | 14 | T14del | ACT | --- | 5 | 5 | B.1.1 | 0.000091 |
ORF7a | 14 | T14I | aCt | aTt | 5 | 5 | B.1.1.284 | 0.000537 |
ORF7a | 14 | T14I | aCt | aTt | 5 | 5 | B.1.1.403 | 0.128205 |
ORF7a | 14 | T14I | aCt | aTt | 5 | 5 | B.1.1.89 | 0.030303 |
ORF7a | 14 | T14del | ACT | --- | 5 | 5 | B.1.177.44 | 0.002595 |
ORF7a | 14 | T14T | acT | acC | 5 | 5 | B.1.234 | 0.00066 |
ORF7a | 14 | T14N | aCt | aAt | 5 | 5 | B.1.36.29 | 0.002587 |
ORF7a | 14 | T14del | ACT | --- | 5 | 5 | B.1.429 | 0.000118 |
ORF7a | 14 | T14I | aCt | aTt | 5 | 5 | D.2 | 0.000375 |
ORF7a | 14 | T14del | ACT | --- | 5 | 5 | Q.8 | 0.000825 |
ORF7a | 14 | T14P | Act | Cct | 4 | 4 | AY.103 | 0.000025 |
ORF7a | 14 | T14I | aCt | aTt | 4 | 4 | AY.118 | 0.000251 |
ORF7a | 14 | T14I | aCt | aTt | 4 | 4 | AY.15 | 0.008889 |
ORF7a | 14 | T14I | aCt | aTt | 4 | 4 | AY.35 | 0.000932 |
ORF7a | 14 | T14T | acT | acG | 3 | 4 | AY.39 | 0.000074 |
ORF7a | 14 | T14T | acT | acC | 1 | 4 | AY.39 | 0.000025 |
ORF7a | 14 | T14I | aCt | aTt | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF7a | 14 | T14S | aCt | aGt | 4 | 4 | AY.44 | 0.000024 |
ORF7a | 14 | T14I | aCt | aTt | 4 | 4 | AY.5.3 | 0.00135 |
ORF7a | 14 | T14I | aCt | aTt | 4 | 4 | AY.71 | 0.0019 |
ORF7a | 14 | T14I | aCt | aTt | 4 | 4 | AY.87 | 0.003331 |
ORF7a | 14 | T14del | ACT | --- | 4 | 4 | AY.98.1 | 0.000194 |
ORF7a | 14 | T14I | aCt | aTt | 4 | 4 | B.1.1.348 | 0.003185 |
ORF7a | 14 | T14I | aCt | aTt | 4 | 4 | B.1.1.521 | 0.02139 |
ORF7a | 14 | T14I | aCt | aTt | 4 | 4 | B.1.1.70 | 0.001364 |
ORF7a | 14 | T14N | aCt | aAt | 4 | 4 | B.1.160 | 0.000125 |
ORF7a | 14 | T14I | aCt | aTt | 4 | 4 | B.1.232 | 0.002149 |
ORF7a | 14 | T14del | ACT | --- | 4 | 4 | B.1.234 | 0.000528 |
ORF7a | 14 | T14I | aCt | aTt | 4 | 4 | B.1.240 | 0.000862 |
ORF7a | 14 | T14del | ACT | --- | 4 | 4 | B.1.258 | 0.000266 |
ORF7a | 14 | T14del | ACT | --- | 4 | 4 | B.1.351 | 0.000119 |
ORF7a | 14 | T14I | aCt | aTt | 4 | 4 | B.1.453 | 0.012945 |
ORF7a | 14 | T14T | acT | acG | 4 | 4 | B.1.525 | 0.000453 |
ORF7a | 14 | T14I | aCt | aTt | 4 | 4 | B.1.558 | 0.018265 |
ORF7a | 14 | T14I | aCt | aTt | 4 | 4 | B.1.561 | 0.001588 |
ORF7a | 14 | T14I | aCt | aTt | 4 | 4 | B.1.587 | 0.00759 |
ORF7a | 14 | T14I | aCt | aTt | 4 | 4 | B.1.595 | 0.001044 |
ORF7a | 14 | T14I | aCt | aTt | 4 | 4 | B.6 | 0.00364 |
ORF7a | 14 | T14I | aCt | aTt | 4 | 4 | C.36 | 0.003643 |
ORF7a | 14 | T14N | aCt | aAt | 4 | 4 | P.1 | 0.000063 |
ORF7a | 14 | T14del | ACT | --- | 4 | 4 | P.1.16 | 0.001496 |
ORF7a | 14 | T14R | aCT | aGG | 2 | 3 | All | 0 |
ORF7a | 14 | T14R | ACT | CGC | 1 | 3 | All | 0 |
ORF7a | 14 | T14N | aCt | aAt | 3 | 3 | AY.103 | 0.000019 |
ORF7a | 14 | T14del | ACT | --- | 3 | 3 | AY.106 | 0.001005 |
ORF7a | 14 | T14I | aCt | aTt | 3 | 3 | AY.106 | 0.001005 |
ORF7a | 14 | T14del | ACT | --- | 3 | 3 | AY.107 | 0.001398 |
ORF7a | 14 | T14I | aCt | aTt | 3 | 3 | AY.121 | 0.000406 |
ORF7a | 14 | T14S | aCt | aGt | 3 | 3 | AY.20 | 0.000117 |
ORF7a | 14 | T14A | Act | Gct | 3 | 3 | AY.26 | 0.000085 |
ORF7a | 14 | T14I | aCt | aTt | 3 | 3 | AY.27 | 0.000194 |
ORF7a | 14 | T14N | aCt | aAt | 3 | 3 | AY.29 | 0.000047 |
ORF7a | 14 | T14del | ACT | --- | 3 | 3 | AY.3.1 | 0.000256 |
ORF7a | 14 | T14T | acT | acC | 3 | 3 | AY.43 | 0.000013 |
ORF7a | 14 | T14I | aCt | aTt | 3 | 3 | AY.46 | 0.000312 |
ORF7a | 14 | T14del | ACT | --- | 3 | 3 | AY.48 | 0.001395 |
ORF7a | 14 | T14I | aCt | aTt | 3 | 3 | AY.99 | 0.003148 |
ORF7a | 14 | T14A | Act | Gct | 3 | 3 | B.1.1 | 0.000054 |
ORF7a | 14 | T14I | aCt | aTt | 3 | 3 | B.1.1.170 | 0.003741 |
ORF7a | 14 | T14I | aCt | aTt | 3 | 3 | B.1.1.194 | 0.014851 |
ORF7a | 14 | T14I | aCt | aTt | 3 | 3 | B.1.1.243 | 0.012245 |
ORF7a | 14 | T14N | aCt | aAt | 3 | 3 | B.1.1.302 | 0.006224 |
ORF7a | 14 | T14I | aCt | aTt | 3 | 3 | B.1.1.318 | 0.000905 |
ORF7a | 14 | T14I | aCt | aTt | 3 | 3 | B.1.1.39 | 0.001529 |
ORF7a | 14 | T14T | acT | acG | 3 | 3 | B.1.1.397 | 0.006757 |
ORF7a | 14 | T14I | aCt | aTt | 3 | 3 | B.1.1.416 | 0.002715 |
ORF7a | 14 | T14I | aCt | aTt | 3 | 3 | B.1.1.434 | 0.001046 |
ORF7a | 14 | T14I | aCt | aTt | 3 | 3 | B.1.1.466 | 0.026087 |
ORF7a | 14 | T14I | aCt | aTt | 3 | 3 | B.1.157 | 0.008955 |
ORF7a | 14 | T14I | aCt | aTt | 3 | 3 | B.1.177.60 | 0.000655 |
ORF7a | 14 | T14I | aCt | aTt | 3 | 3 | B.1.177.73 | 0.001699 |
ORF7a | 14 | T14I | aCt | aTt | 3 | 3 | B.1.237 | 0.014925 |
ORF7a | 14 | T14I | aCt | aTt | 3 | 3 | B.1.346 | 0.003932 |
ORF7a | 14 | T14I | aCt | aTt | 3 | 3 | B.1.398 | 0.008929 |
ORF7a | 14 | T14I | aCt | aTt | 3 | 3 | B.1.413 | 0.012766 |
ORF7a | 14 | T14S | aCt | aGt | 3 | 3 | B.1.427 | 0.000151 |
ORF7a | 14 | T14I | aCt | aTt | 3 | 3 | B.1.473 | 0.057692 |
ORF7a | 14 | T14I | aCt | aTt | 3 | 3 | B.1.497 | 0.000944 |
ORF7a | 14 | T14I | aCt | aTt | 3 | 3 | B.1.525 | 0.000339 |
ORF7a | 14 | T14del | ACT | --- | 3 | 3 | B.1.596 | 0.000261 |
ORF7a | 14 | T14del | ACT | --- | 3 | 3 | B.1.626 | 0.017143 |
ORF7a | 14 | T14I | aCt | aTt | 3 | 3 | L.3 | 0.010638 |
ORF7a | 14 | T14T | acT | acC | 3 | 3 | P.1.15 | 0.000697 |
ORF7a | 14 | T14I | aCt | aTt | 3 | 3 | P.1.17 | 0.000485 |
ORF7a | 14 | T14I | aCt | aTt | 3 | 3 | R.1 | 0.00027 |
ORF7a | 14 | T14R | aCT | aGG | 2 | 2 | 0.111111 | |
ORF7a | 14 | T14S | aCT | aGC | 2 | 2 | 0.111111 | |
ORF7a | 14 | T14N | aCt | aAt | 2 | 2 | 0.111111 | |
ORF7a | 14 | T14T | acT | acG | 2 | 2 | A.2.5 | 0.000998 |
ORF7a | 14 | T14del | ACT | --- | 2 | 2 | A.28 | 0.005291 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | AD.2 | 0.000438 |
ORF7a | 14 | T14V | ACt | GTt | 2 | 2 | All | 0 |
ORF7a | 14 | T14del | ACT | --- | 2 | 2 | AY.100 | 0.000092 |
ORF7a | 14 | T14S | aCt | aGt | 2 | 2 | AY.101 | 0.000981 |
ORF7a | 14 | T14A | Act | Gct | 2 | 2 | AY.102 | 0.000053 |
ORF7a | 14 | T14N | aCt | aAt | 2 | 2 | AY.102 | 0.000053 |
ORF7a | 14 | T14S | aCt | aGt | 2 | 2 | AY.103 | 0.000012 |
ORF7a | 14 | T14T | acT | acC | 2 | 2 | AY.106 | 0.00067 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | AY.107 | 0.000932 |
ORF7a | 14 | T14P | Act | Cct | 2 | 2 | AY.113 | 0.000285 |
ORF7a | 14 | T14del | ACT | --- | 2 | 2 | AY.119 | 0.000071 |
ORF7a | 14 | T14S | aCt | aGt | 2 | 2 | AY.119 | 0.000071 |
ORF7a | 14 | T14del | ACT | --- | 2 | 2 | AY.20 | 0.000078 |
ORF7a | 14 | T14T | acT | acC | 2 | 2 | AY.23 | 0.000139 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | AY.28 | 0.003781 |
ORF7a | 14 | T14del | ACT | --- | 2 | 2 | AY.29.1 | 0.000441 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | AY.30 | 0.000791 |
ORF7a | 14 | T14A | Act | Gct | 2 | 2 | AY.33 | 0.000134 |
ORF7a | 14 | T14del | ACT | --- | 2 | 2 | AY.33 | 0.000134 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | AY.34.1 | 0.00102 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | AY.37 | 0.000632 |
ORF7a | 14 | T14N | aCt | aAt | 2 | 2 | AY.39 | 0.000049 |
ORF7a | 14 | T14A | Act | Gct | 2 | 2 | AY.39 | 0.000049 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | AY.39.1 | 0.000079 |
ORF7a | 14 | T14A | Act | Gct | 2 | 2 | AY.4 | 0.000003 |
ORF7a | 14 | T14del | ACT | --- | 2 | 2 | AY.42 | 0.00008 |
ORF7a | 14 | T14N | aCt | aAt | 2 | 2 | AY.43 | 0.000009 |
ORF7a | 14 | T14A | Act | Gct | 2 | 2 | AY.44 | 0.000012 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | AY.45 | 0.000243 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | AY.46.3 | 0.001867 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | AY.51 | 0.001818 |
ORF7a | 14 | T14A | Act | Gct | 2 | 2 | AY.52 | 0.001629 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | AY.62 | 0.000871 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | AY.7.2 | 0.001119 |
ORF7a | 14 | T14del | ACT | --- | 2 | 2 | AY.75 | 0.000112 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | AY.78 | 0.003082 |
ORF7a | 14 | T14del | ACT | --- | 2 | 2 | AY.9 | 0.000135 |
ORF7a | 14 | T14del | ACT | --- | 2 | 2 | AY.9.2 | 0.000073 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | AY.98.1 | 0.000097 |
ORF7a | 14 | T14P | Act | Cct | 1 | 2 | B.1.1 | 0.000018 |
ORF7a | 14 | T14P | AcT | CcA | 1 | 2 | B.1.1 | 0.000018 |
ORF7a | 14 | T14T | acT | acC | 2 | 2 | B.1.1.255 | 0.006061 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | B.1.1.274 | 0.010101 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | B.1.1.306 | 0.000877 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | B.1.1.326 | 0.003521 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | B.1.1.37 | 0.000386 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | B.1.1.47 | 0.010695 |
ORF7a | 14 | T14T | acT | acG | 1 | 2 | B.1.1.519 | 0.00004 |
ORF7a | 14 | T14T | acT | acC | 1 | 2 | B.1.1.519 | 0.00004 |
ORF7a | 14 | T14del2 | aCT | a-- | 1 | 2 | B.1.1.7 | 0.000001 |
ORF7a | 14 | T14del2 | ACt | --t | 1 | 2 | B.1.1.7 | 0.000001 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | B.1.111 | 0.00235 |
ORF7a | 14 | T14del | ACT | --- | 2 | 2 | B.1.160 | 0.000062 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | B.1.160.30 | 0.005952 |
ORF7a | 14 | T14T | acT | acC | 2 | 2 | B.1.177 | 0.000026 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | B.1.177.42 | 0.001789 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | B.1.177.43 | 0.002954 |
ORF7a | 14 | T14del | ACT | --- | 2 | 2 | B.1.177.86 | 0.000367 |
ORF7a | 14 | T14T | acT | acC | 1 | 2 | B.1.2 | 0.000009 |
ORF7a | 14 | T14T | acT | acG | 1 | 2 | B.1.2 | 0.000009 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | B.1.213 | 0.029851 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | B.1.236 | 0.004107 |
ORF7a | 14 | T14S | aCt | aGt | 2 | 2 | B.1.258 | 0.000133 |
ORF7a | 14 | T14del | ACT | --- | 2 | 2 | B.1.258.11 | 0.000793 |
ORF7a | 14 | T14del | ACT | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF7a | 14 | T14del | ACT | --- | 2 | 2 | B.1.36.38 | 0.003284 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | B.1.404 | 0.002604 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | B.1.416.1 | 0.003125 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | B.1.420 | 0.020833 |
ORF7a | 14 | T14N | aCt | aAt | 2 | 2 | B.1.429 | 0.000047 |
ORF7a | 14 | T14N | aCt | aAt | 2 | 2 | B.1.497 | 0.00063 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | B.1.517 | 0.000854 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | B.1.524 | 0.002813 |
ORF7a | 14 | T14del | ACT | --- | 2 | 2 | B.1.525 | 0.000226 |
ORF7a | 14 | T14del | ACT | --- | 2 | 2 | B.1.637 | 0.000146 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | B.6.6 | 0.001778 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | C.35 | 0.001548 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | P.1.12 | 0.000968 |
ORF7a | 14 | T14I | aCt | aTt | 2 | 2 | P.6 | 0.006289 |
ORF7a | 14 | T14del | ACT | --- | 2 | 2 | Q.1 | 0.000253 |
ORF7a | 14 | T14del | ACT | --- | 2 | 2 | R.1 | 0.00018 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | A | 0.000387 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | A.1 | 0.000282 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | A.2 | 0.000662 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | A.2.5 | 0.000499 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | A.2.5.1 | 0.004808 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | A.27 | 0.001656 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | AD.1 | 0.004115 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AE.5 | 0.018519 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AF.1 | 0.037037 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | AK.1 | 0.012658 |
ORF7a | 14 | T14D | ACt | GAt | 1 | 1 | All | 0 |
ORF7a | 14 | T14F | ACt | TTt | 1 | 1 | All | 0 |
ORF7a | 14 | T14M | aCT | aTG | 1 | 1 | All | 0 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AU.2 | 0.002421 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AU.3 | 0.00211 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AY.1 | 0.000396 |
ORF7a | 14 | T14S | aCt | aGt | 1 | 1 | AY.100 | 0.000046 |
ORF7a | 14 | T14T | acT | acG | 1 | 1 | AY.102 | 0.000027 |
ORF7a | 14 | T14T | acT | acA | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 14 | T14A | Act | Gct | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AY.105 | 0.000643 |
ORF7a | 14 | T14S | aCt | aGt | 1 | 1 | AY.106 | 0.000335 |
ORF7a | 14 | T14del1 | aCt | a-t | 1 | 1 | AY.108 | 0.001103 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AY.108 | 0.001103 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | AY.109 | 0.00074 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AY.110 | 0.000113 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AY.111 | 0.000183 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AY.114 | 0.000231 |
ORF7a | 14 | T14S | AcT | TcA | 1 | 1 | AY.116.1 | 0.000311 |
ORF7a | 14 | T14N | aCt | aAt | 1 | 1 | AY.118 | 0.000063 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF7a | 14 | T14R | ACT | CGC | 1 | 1 | AY.120.1 | 0.000321 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | AY.120.1 | 0.000321 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | AY.121 | 0.000135 |
ORF7a | 14 | T14T | acT | acC | 1 | 1 | AY.14 | 0.000088 |
ORF7a | 14 | T14N | aCt | aAt | 1 | 1 | AY.20 | 0.000039 |
ORF7a | 14 | T14A | Act | Gct | 1 | 1 | AY.20 | 0.000039 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AY.21 | 0.001898 |
ORF7a | 14 | T14del1 | acT | ac- | 1 | 1 | AY.23 | 0.00007 |
ORF7a | 14 | T14T | acT | acC | 1 | 1 | AY.23.1 | 0.000417 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AY.23.1 | 0.000417 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AY.24 | 0.000431 |
ORF7a | 14 | T14S | aCt | aGt | 1 | 1 | AY.25 | 0.000006 |
ORF7a | 14 | T14T | acT | acC | 1 | 1 | AY.26 | 0.000028 |
ORF7a | 14 | T14N | aCt | aAt | 1 | 1 | AY.3 | 0.00001 |
ORF7a | 14 | T14A | Act | Gct | 1 | 1 | AY.3 | 0.00001 |
ORF7a | 14 | T14S | aCt | aGt | 1 | 1 | AY.3 | 0.00001 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AY.32 | 0.000532 |
ORF7a | 14 | T14N | aCt | aAt | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | AY.34 | 0.000097 |
ORF7a | 14 | T14S | aCt | aGt | 1 | 1 | AY.34.1 | 0.00051 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AY.38 | 0.000499 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF7a | 14 | T14N | aCt | aAt | 1 | 1 | AY.4.5 | 0.000107 |
ORF7a | 14 | T14A | Act | Gct | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 14 | T14F | ACt | TTt | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 14 | T14del1 | acT | ac- | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 14 | T14S | Act | Tct | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 14 | T14M | aCT | aTG | 1 | 1 | AY.44 | 0.000006 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | AY.45 | 0.000122 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AY.46.1 | 0.001027 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AY.46.2 | 0.000635 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AY.46.5 | 0.000198 |
ORF7a | 14 | T14T | acT | acC | 1 | 1 | AY.47 | 0.000031 |
ORF7a | 14 | T14N | aCt | aAt | 1 | 1 | AY.5 | 0.000021 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AY.5.4 | 0.000277 |
ORF7a | 14 | T14N | aCt | aAt | 1 | 1 | AY.5.4 | 0.000277 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | AY.54 | 0.000095 |
ORF7a | 14 | T14N | aCt | aAt | 1 | 1 | AY.54 | 0.000095 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AY.55 | 0.000917 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AY.57 | 0.000656 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | AY.61 | 0.000105 |
ORF7a | 14 | T14S | aCt | aGt | 1 | 1 | AY.61 | 0.000105 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | AY.66 | 0.00107 |
ORF7a | 14 | T14T | acT | acC | 1 | 1 | AY.67 | 0.000464 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AY.7 | 0.000196 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AY.73 | 0.000665 |
ORF7a | 14 | T14T | acT | acC | 1 | 1 | AY.75 | 0.000056 |
ORF7a | 14 | T14S | aCt | aGt | 1 | 1 | AY.75.1 | 0.00018 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AY.76 | 0.004831 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | AY.79 | 0.001211 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | AY.84 | 0.000437 |
ORF7a | 14 | T14S | aCt | aGt | 1 | 1 | AY.84 | 0.000437 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AY.84 | 0.000437 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AY.89 | 0.004902 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AY.90 | 0.000684 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AY.91.1 | 0.004065 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AY.92 | 0.000287 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AY.94 | 0.000443 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | AY.94 | 0.000443 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | AY.95 | 0.000761 |
ORF7a | 14 | T14T | acT | acC | 1 | 1 | AY.98 | 0.000079 |
ORF7a | 14 | T14N | aCt | aAt | 1 | 1 | AY.98.1 | 0.000048 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF7a | 14 | T14A | Act | Gct | 1 | 1 | B | 0.000128 |
ORF7a | 14 | T14S | aCt | aGt | 1 | 1 | B.1 | 0.000009 |
ORF7a | 14 | T14T | acT | acC | 1 | 1 | B.1 | 0.000009 |
ORF7a | 14 | T14S | aCt | aGt | 1 | 1 | B.1.1 | 0.000018 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.1.12 | 0.007463 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.1.132 | 0.014925 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.1.135 | 0.004695 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.1.192 | 0.002309 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.1.220 | 0.001859 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | B.1.1.222 | 0.000204 |
ORF7a | 14 | T14N | aCt | aAt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | B.1.1.25 | 0.000569 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | B.1.1.258 | 0.003257 |
ORF7a | 14 | T14T | acT | acC | 1 | 1 | B.1.1.258 | 0.003257 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.1.27 | 0.00565 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.1.270 | 0.010309 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.1.277 | 0.000759 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.1.279 | 0.001121 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.1.298 | 0.000862 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.1.303 | 0.002762 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.1.304 | 0.002809 |
ORF7a | 14 | T14T | acT | acC | 1 | 1 | B.1.1.306 | 0.000438 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.1.312 | 0.001912 |
ORF7a | 14 | T14T | acT | acA | 1 | 1 | B.1.1.318 | 0.000302 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.1.354 | 0.004386 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.1.368 | 0.003086 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.1.369 | 0.000446 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.1.375 | 0.011905 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.1.376 | 0.005952 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.1.383 | 0.0625 |
ORF7a | 14 | T14A | Act | Gct | 1 | 1 | B.1.1.39 | 0.00051 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.1.420 | 0.001006 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.1.429 | 0.004608 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.1.432 | 0.001266 |
ORF7a | 14 | T14N | aCt | aAt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.1.462 | 0.008621 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.1.486 | 0.001577 |
ORF7a | 14 | T14del1 | acT | ac- | 1 | 1 | B.1.1.50 | 0.000679 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.1.507 | 0.008696 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | B.1.1.522 | 0.017241 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.1.54 | 0.003021 |
ORF7a | 14 | T14D | ACt | GAt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 14 | T14del1 | acT | ac- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | B.1.115 | 0.021739 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.126 | 0.001276 |
ORF7a | 14 | T14A | Act | Gct | 1 | 1 | B.1.128 | 0.000635 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.134 | 0.005464 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.139 | 0.000733 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.147 | 0.000756 |
ORF7a | 14 | T14T | acT | acC | 1 | 1 | B.1.160 | 0.000031 |
ORF7a | 14 | T14del2 | aCT | a-- | 1 | 1 | B.1.160 | 0.000031 |
ORF7a | 14 | T14del2 | aCT | a-- | 1 | 1 | B.1.160.14 | 0.002119 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.160.28 | 0.002924 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.160.29 | 0.004219 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.160.32 | 0.004292 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.160.33 | 0.004425 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.160.9 | 0.007194 |
ORF7a | 14 | T14del2 | ACt | --t | 1 | 1 | B.1.161 | 0.017241 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.177.12 | 0.000152 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.177.16 | 0.000664 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.177.2 | 0.004545 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.177.23 | 0.003236 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.177.30 | 0.002513 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.177.31 | 0.011494 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.177.33 | 0.001645 |
ORF7a | 14 | T14T | acT | acC | 1 | 1 | B.1.177.44 | 0.000519 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.177.5 | 0.001242 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.177.52 | 0.001757 |
ORF7a | 14 | T14T | acT | acC | 1 | 1 | B.1.177.57 | 0.000281 |
ORF7a | 14 | T14V | ACt | GTt | 1 | 1 | B.1.177.63 | 0.002703 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.177.77 | 0.000726 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.177.82 | 0.000477 |
ORF7a | 14 | T14del1 | acT | ac- | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 14 | T14S | aCt | aGt | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.206 | 0.000816 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | B.1.214.2 | 0.0006 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.22 | 0.001318 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF7a | 14 | T14N | aCt | aAt | 1 | 1 | B.1.221.2 | 0.004016 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.221.3 | 0.000833 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.222 | 0.001692 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.239 | 0.001221 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | B.1.240 | 0.000216 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.241 | 0.000812 |
ORF7a | 14 | T14A | Act | Gct | 1 | 1 | B.1.243 | 0.00007 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.247 | 0.014925 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.251 | 0.021739 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.260 | 0.003344 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.265 | 0.001271 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.320 | 0.001245 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.326 | 0.007576 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.329 | 0.000608 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.332 | 0.003497 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.349 | 0.000715 |
ORF7a | 14 | T14T | acT | acG | 1 | 1 | B.1.351 | 0.00003 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.351.3 | 0.000876 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.354 | 0.043478 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.36.10 | 0.004785 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.36.22 | 0.001208 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.36.35 | 0.002604 |
ORF7a | 14 | T14A | Act | Gct | 1 | 1 | B.1.36.8 | 0.001 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.367 | 0.000792 |
ORF7a | 14 | T14T | acT | acC | 1 | 1 | B.1.380 | 0.006623 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.381 | 0.007812 |
ORF7a | 14 | T14A | Act | Gct | 1 | 1 | B.1.389 | 0.001002 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.396 | 0.000706 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.399 | 0.001934 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.400 | 0.000429 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.411 | 0.003704 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.428.3 | 0.012821 |
ORF7a | 14 | T14A | Act | Gct | 1 | 1 | B.1.429 | 0.000024 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | B.1.433 | 0.003195 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.462 | 0.007246 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF7a | 14 | T14N | aCt | aAt | 1 | 1 | B.1.470 | 0.001404 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.470 | 0.001404 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | B.1.470 | 0.001404 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.480 | 0.002488 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.499 | 0.00105 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.503 | 0.002488 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.509 | 0.000866 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.515 | 0.014493 |
ORF7a | 14 | T14S | aCt | aGt | 1 | 1 | B.1.526 | 0.000024 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.533 | 0.009615 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.564 | 0.000426 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.567 | 0.003333 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.568 | 0.001111 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.578 | 0.017857 |
ORF7a | 14 | T14N | aCt | aAt | 1 | 1 | B.1.580 | 0.004065 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.580 | 0.004065 |
ORF7a | 14 | T14T | acT | acA | 1 | 1 | B.1.595 | 0.000261 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.598 | 0.016949 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.609 | 0.000479 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.620 | 0.000946 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF7a | 14 | T14T | acT | acG | 1 | 1 | B.1.621 | 0.000089 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.621.1 | 0.000506 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.625 | 0.002353 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | B.1.628 | 0.000352 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.630 | 0.005236 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF7a | 14 | T14N | aCt | aAt | 1 | 1 | B.1.636 | 0.006711 |
ORF7a | 14 | T14N | aCt | aAt | 1 | 1 | B.1.9.4 | 0.006135 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.1.9.5 | 0.005682 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | B.20 | 0.023256 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | C.1 | 0.002392 |
ORF7a | 14 | T14T | acT | acG | 1 | 1 | C.14 | 0.004329 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | C.33 | 0.058824 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | C.36.3 | 0.000567 |
ORF7a | 14 | T14N | aCt | aAt | 1 | 1 | C.37.1 | 0.002618 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | C.8 | 0.004464 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | N.3 | 0.005814 |
ORF7a | 14 | T14T | acT | acG | 1 | 1 | P.1 | 0.000016 |
ORF7a | 14 | T14A | Act | Gct | 1 | 1 | P.1 | 0.000016 |
ORF7a | 14 | T14S | aCt | aGt | 1 | 1 | P.1.1 | 0.000318 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | P.1.1 | 0.000318 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | P.1.13 | 0.000898 |
ORF7a | 14 | T14S | Act | Tct | 1 | 1 | P.1.17 | 0.000162 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | P.1.4 | 0.000977 |
ORF7a | 14 | T14N | aCt | aAt | 1 | 1 | P.1.4 | 0.000977 |
ORF7a | 14 | T14V | ACt | GTt | 1 | 1 | P.1.7 | 0.000319 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | P.2 | 0.000187 |
ORF7a | 14 | T14T | acT | acC | 1 | 1 | Q.1 | 0.000126 |
ORF7a | 14 | T14I | aCt | aTt | 1 | 1 | Q.1 | 0.000126 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | Q.5 | 0.016949 |
ORF7a | 14 | T14del | ACT | --- | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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