CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 122 & Codon = tgG

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a122X122WnonsyntgAtgG653653127757-27759

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a122X122WtgAtgG653653All0.000125
ORF7a122X122WtgAtgG132132B.1.1.70.000118
ORF7a122X122WtgAtgG9090AY.40.00014
ORF7a122X122WtgAtgG5050B.1.617.20.000188
ORF7a122X122WtgAtgG4949AY.1180.00307
ORF7a122X122WtgAtgG3333B.1.1.2840.003544
ORF7a122X122WtgAtgG2222AY.430.000097
ORF7a122X122WtgAtgG1717AY.1030.000106
ORF7a122X122WtgAtgG1515B.1.20.000132
ORF7a122X122WtgAtgG1313AY.1000.000598
ORF7a122X122WtgAtgG1212B.1.5640.005111
ORF7a122X122WtgAtgG1111AY.440.000067
ORF7a122X122WtgAtgG1111B.1.1.2140.00061
ORF7a122X122WtgAtgG1010AY.120.003161
ORF7a122X122WtgAtgG1010AY.250.00006
ORF7a122X122WtgAtgG1010AY.99.20.000922
ORF7a122X122WtgAtgG99AY.290.000142
ORF7a122X122WtgAtgG99B.1.3510.000268
ORF7a122X122WtgAtgG88D.20.0006
ORF7a122X122WtgAtgG77C.370.000812
ORF7a122X122WtgAtgG77P.10.00011
ORF7a122X122WtgAtgG66AY.390.000148
ORF7a122X122WtgAtgG55B.1.1390.003666
ORF7a122X122WtgAtgG55B.1.1600.000156
ORF7a122X122WtgAtgG55B.1.4290.000118
ORF7a122X122WtgAtgG44AY.200.000155
ORF7a122X122WtgAtgG44AY.380.001997
ORF7a122X122WtgAtgG44AY.470.000124
ORF7a122X122WtgAtgG44B.1.1.2200.007435
ORF7a122X122WtgAtgG44B.1.5950.001044
ORF7a122X122WtgAtgG33AY.30.00003
ORF7a122X122WtgAtgG33AY.330.0002
ORF7a122X122WtgAtgG33AY.690.00056
ORF7a122X122WtgAtgG33B.10.000027
ORF7a122X122WtgAtgG33B.1.10.000054
ORF7a122X122WtgAtgG33B.1.1.570.034483
ORF7a122X122WtgAtgG33B.1.1770.00004
ORF7a122X122WtgAtgG33B.1.6210.000266
ORF7a122X122WtgAtgG220.111111
ORF7a122X122WtgAtgG22AY.1020.000053
ORF7a122X122WtgAtgG22AY.1100.000225
ORF7a122X122WtgAtgG22AY.1170.000169
ORF7a122X122WtgAtgG22AY.460.000208
ORF7a122X122WtgAtgG22B0.000256
ORF7a122X122WtgAtgG22B.1.1.5190.000079
ORF7a122X122WtgAtgG22B.1.177.160.001329
ORF7a122X122WtgAtgG22B.1.2580.000133
ORF7a122X122WtgAtgG22B.1.36.220.002415
ORF7a122X122WtgAtgG22B.1.3890.002004
ORF7a122X122WtgAtgG22B.1.6370.000146
ORF7a122X122WtgAtgG22P.1.120.000968
ORF7a122X122WtgAtgG22P.1.140.000096
ORF7a122X122WtgAtgG11AN.10.02
ORF7a122X122WtgAtgG11AY.1190.000035
ORF7a122X122WtgAtgG11AY.260.000028
ORF7a122X122WtgAtgG11AY.320.000532
ORF7a122X122WtgAtgG11AY.340.000097
ORF7a122X122WtgAtgG11AY.4.20.000022
ORF7a122X122WtgAtgG11AY.420.00004
ORF7a122X122WtgAtgG11AY.46.60.000072
ORF7a122X122WtgAtgG11AY.590.00053
ORF7a122X122WtgAtgG11AY.720.001361
ORF7a122X122WtgAtgG11AY.740.000116
ORF7a122X122WtgAtgG11AY.9.20.000037
ORF7a122X122WtgAtgG11AY.98.10.000048
ORF7a122X122WtgAtgG11B.1.1.130.035714
ORF7a122X122WtgAtgG11B.1.1.1530.001095
ORF7a122X122WtgAtgG11B.1.1.1940.00495
ORF7a122X122WtgAtgG11B.1.1.330.000421
ORF7a122X122WtgAtgG11B.1.1.3480.000796
ORF7a122X122WtgAtgG11B.1.1.4090.002833
ORF7a122X122WtgAtgG11B.1.1.4160.000905
ORF7a122X122WtgAtgG11B.1.1.4340.000349
ORF7a122X122WtgAtgG11B.1.177.170.000821
ORF7a122X122WtgAtgG11B.1.2050.02381
ORF7a122X122WtgAtgG11B.1.2400.000216
ORF7a122X122WtgAtgG11B.1.2410.000812
ORF7a122X122WtgAtgG11B.1.258.170.000104
ORF7a122X122WtgAtgG11B.1.36.210.00216
ORF7a122X122WtgAtgG11B.1.3670.000792
ORF7a122X122WtgAtgG11B.1.3780.006849
ORF7a122X122WtgAtgG11B.1.4270.00005
ORF7a122X122WtgAtgG11B.1.6020.006536
ORF7a122X122WtgAtgG11B.1.6230.000536
ORF7a122X122WtgAtgG11B.230.002924
ORF7a122X122WtgAtgG11C.160.00106
ORF7a122X122WtgAtgG11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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