CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 122 & Codon = tgC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a122X122CnonsyntgAtgC157310.19745227757-27759

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a122X122CtgAtgC31157All0.000006
ORF7a122X122CtgAtgC1054B.1.1.70.000009
ORF7a122X122CtgAtgC39AY.40.000005
ORF7a122X122CtgAtgC18B.1.20.000009
ORF7a122X122CtgAtgC24B.10.000018
ORF7a122X122CtgAtgC44B.1.5770.002749
ORF7a122X122CtgAtgC23B.1.1.5190.000079
ORF7a122X122CtgAtgC11AY.1200.000037
ORF7a122X122CtgAtgC11AY.350.000233
ORF7a122X122CtgAtgC11AY.4.40.000409
ORF7a122X122CtgAtgC11AY.470.000031
ORF7a122X122CtgAtgC11AY.60.000041
ORF7a122X122CtgAtgC11AY.980.000079
ORF7a122X122CtgAtgC11B.1.1.2140.000055
ORF7a122X122CtgAtgC11B.1.1770.000013
ORF7a122X122CtgAtgC11C.370.000116

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.