CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 122 & Codon = ---

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF7a	122	X122del		del	TGA	---	2006	2006	1	27757-27759

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF7a	122	X122del	TGA	---	2006	2006	All	0.000384
ORF7a	122	X122del	TGA	---	1197	1197	B.1.1.7	0.001072
ORF7a	122	X122del	TGA	---	230	230	AY.4	0.000358
ORF7a	122	X122del	TGA	---	64	64	P.1	0.001008
ORF7a	122	X122del	TGA	---	50	50	AY.25	0.000301
ORF7a	122	X122del	TGA	---	35	35	B.1.2	0.000308
ORF7a	122	X122del	TGA	---	20	20	B.1	0.000183
ORF7a	122	X122del	TGA	---	19	19	AY.103	0.000118
ORF7a	122	X122del	TGA	---	19	19	AY.43	0.000084
ORF7a	122	X122del	TGA	---	18	18	C.37	0.002089
ORF7a	122	X122del	TGA	---	17	17	AY.29	0.000268
ORF7a	122	X122del	TGA	---	15	15	B.1.427	0.000757
ORF7a	122	X122del	TGA	---	15	15	B.1.617.2	0.000056
ORF7a	122	X122del	TGA	---	14	14	AY.111	0.002564
ORF7a	122	X122del	TGA	---	14	14	B.1.177	0.000184
ORF7a	122	X122del	TGA	---	13	13	B.1.1	0.000236
ORF7a	122	X122del	TGA	---	11	11	AY.26	0.000311
ORF7a	122	X122del	TGA	---	11	11	AY.3	0.000109
ORF7a	122	X122del	TGA	---	11	11	AY.44	0.000067
ORF7a	122	X122del	TGA	---	11	11	Q.8	0.001814
ORF7a	122	X122del	TGA	---	10	10	B.1.234	0.001319
ORF7a	122	X122del	TGA	---	9	9	AY.39	0.000222
ORF7a	122	X122del	TGA	---	9	9	B.1.429	0.000212
ORF7a	122	X122del	TGA	---	8	8	B.1.1.214	0.000444
ORF7a	122	X122del	TGA	---	8	8	B.1.36	0.001167
ORF7a	122	X122del	TGA	---	7	7	AY.5	0.000145
ORF7a	122	X122del	TGA	---	6	6	B.1.1.519	0.000238
ORF7a	122	X122del	TGA	---	6	6	B.1.526	0.000141
ORF7a	122	X122del	TGA	---	5	5	P.1.14	0.000239
ORF7a	122	X122del	TGA	---	5	5	P.2	0.000933
ORF7a	122	X122del	TGA	---	4	4	AY.114	0.000924
ORF7a	122	X122del	TGA	---	4	4	AY.120	0.000149
ORF7a	122	X122del	TGA	---	4	4	AY.79	0.004843
ORF7a	122	X122del	TGA	---	4	4	B.1.1.284	0.00043
ORF7a	122	X122del	TGA	---	4	4	B.1.1.434	0.001394
ORF7a	122	X122del	TGA	---	4	4	B.1.258.17	0.000416
ORF7a	122	X122del	TGA	---	4	4	B.1.351	0.000119
ORF7a	122	X122del	TGA	---	4	4	B.1.351.2	0.00121
ORF7a	122	X122del	TGA	---	4	4	B.1.621	0.000354
ORF7a	122	X122del	TGA	---	4	4	Q.1	0.000505
ORF7a	122	X122del	TGA	---	3	3	B.1.1.58	0.016129
ORF7a	122	X122del	TGA	---	3	3	B.1.258	0.0002
ORF7a	122	X122del	TGA	---	3	3	B.1.525	0.000339
ORF7a	122	X122del	TGA	---	3	3	B.1.621.1	0.001517
ORF7a	122	X122del	TGA	---	3	3	B.1.626	0.017143
ORF7a	122	X122del	TGA	---	3	3	B.1.628	0.001057
ORF7a	122	X122del	TGA	---	3	3	P.1.15	0.000697
ORF7a	122	X122del	TGA	---	2	2	AY.108	0.002205
ORF7a	122	X122del	TGA	---	2	2	AY.119	0.000071
ORF7a	122	X122del	TGA	---	2	2	AY.20	0.000078
ORF7a	122	X122del	TGA	---	2	2	AY.30	0.000791
ORF7a	122	X122del	TGA	---	2	2	AY.4.2	0.000043
ORF7a	122	X122del	TGA	---	2	2	AY.47	0.000062
ORF7a	122	X122del	TGA	---	2	2	AY.94	0.000885
ORF7a	122	X122del	TGA	---	2	2	B.1.1.1	0.000653
ORF7a	122	X122del	TGA	---	2	2	B.1.177.50	0.00939
ORF7a	122	X122del	TGA	---	2	2	B.1.177.60	0.000437
ORF7a	122	X122del	TGA	---	2	2	B.1.177.7	0.00033
ORF7a	122	X122del	TGA	---	2	2	B.1.243	0.000139
ORF7a	122	X122del	TGA	---	2	2	B.1.466.2	0.000782
ORF7a	122	X122del	TGA	---	2	2	B.1.596	0.000174
ORF7a	122	X122del	TGA	---	2	2	B.1.637	0.000146
ORF7a	122	X122del	TGA	---	2	2	P.1.1	0.000635
ORF7a	122	X122del	TGA	---	1	1	A	0.000387
ORF7a	122	X122del	TGA	---	1	1	A.1	0.000282
ORF7a	122	X122del	TGA	---	1	1	A.2.2	0.001689
ORF7a	122	X122del	TGA	---	1	1	A.23	0.010526
ORF7a	122	X122del	TGA	---	1	1	AE.8	0.000489
ORF7a	122	X122del	TGA	---	1	1	AU.1	0.001266
ORF7a	122	X122del	TGA	---	1	1	AY.100	0.000046
ORF7a	122	X122del	TGA	---	1	1	AY.113	0.000142
ORF7a	122	X122del	TGA	---	1	1	AY.118	0.000063
ORF7a	122	X122del	TGA	---	1	1	AY.12	0.000316
ORF7a	122	X122del	TGA	---	1	1	AY.121	0.000135
ORF7a	122	X122del	TGA	---	1	1	AY.23	0.00007
ORF7a	122	X122del	TGA	---	1	1	AY.24	0.000431
ORF7a	122	X122del	TGA	---	1	1	AY.42	0.00004
ORF7a	122	X122del	TGA	---	1	1	AY.5.4	0.000277
ORF7a	122	X122del	TGA	---	1	1	AY.53	0.000288
ORF7a	122	X122del	TGA	---	1	1	AY.6	0.000041
ORF7a	122	X122del	TGA	---	1	1	AY.60	0.000938
ORF7a	122	X122del	TGA	---	1	1	AY.98.1	0.000048
ORF7a	122	X122del	TGA	---	1	1	AZ.2	0.000821
ORF7a	122	X122del	TGA	---	1	1	AZ.3	0.00152
ORF7a	122	X122del	TGA	---	1	1	B	0.000128
ORF7a	122	X122del	TGA	---	1	1	B.1.1.165	0.015385
ORF7a	122	X122del	TGA	---	1	1	B.1.1.231	0.003096
ORF7a	122	X122del	TGA	---	1	1	B.1.1.265	0.003155
ORF7a	122	X122del	TGA	---	1	1	B.1.1.280	0.003086
ORF7a	122	X122del	TGA	---	1	1	B.1.1.318	0.000302
ORF7a	122	X122del	TGA	---	1	1	B.1.1.33	0.000421
ORF7a	122	X122del	TGA	---	1	1	B.1.1.397	0.002252
ORF7a	122	X122del	TGA	---	1	1	B.1.1.482	0.023256
ORF7a	122	X122del	TGA	---	1	1	B.1.110.3	0.000718
ORF7a	122	X122del	TGA	---	1	1	B.1.160	0.000031
ORF7a	122	X122del	TGA	---	1	1	B.1.177.21	0.000076
ORF7a	122	X122del	TGA	---	1	1	B.1.177.42	0.000894
ORF7a	122	X122del	TGA	---	1	1	B.1.177.44	0.000519
ORF7a	122	X122del	TGA	---	1	1	B.1.177.57	0.000281
ORF7a	122	X122del	TGA	---	1	1	B.1.177.77	0.000726
ORF7a	122	X122del	TGA	---	1	1	B.1.177.87	0.000728
ORF7a	122	X122del	TGA	---	1	1	B.1.221	0.000071
ORF7a	122	X122del	TGA	---	1	1	B.1.258.11	0.000396
ORF7a	122	X122del	TGA	---	1	1	B.1.265	0.001271
ORF7a	122	X122del	TGA	---	1	1	B.1.351.3	0.000876
ORF7a	122	X122del	TGA	---	1	1	B.1.36.16	0.001425
ORF7a	122	X122del	TGA	---	1	1	B.1.36.31	0.001751
ORF7a	122	X122del	TGA	---	1	1	B.1.362	0.001541
ORF7a	122	X122del	TGA	---	1	1	B.1.369	0.000285
ORF7a	122	X122del	TGA	---	1	1	B.1.375	0.00082
ORF7a	122	X122del	TGA	---	1	1	B.1.413	0.004255
ORF7a	122	X122del	TGA	---	1	1	B.1.468	0.005714
ORF7a	122	X122del	TGA	---	1	1	B.1.617.1	0.000129
ORF7a	122	X122del	TGA	---	1	1	B.1.630	0.005236
ORF7a	122	X122del	TGA	---	1	1	C.30	0.001727
ORF7a	122	X122del	TGA	---	1	1	D.2	0.000075
ORF7a	122	X122del	TGA	---	1	1	N.5	0.001767
ORF7a	122	X122del	TGA	---	1	1	P.1.12	0.000484
ORF7a	122	X122del	TGA	---	1	1	P.1.16	0.000374

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.