CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 121 & Codon = gGa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a121E121GnonsyngAagGa2562530.98828127754-27756

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a121E121GgAagGa253256All0.000048
ORF7a121E121GgAagGa170170AY.40.000265
ORF7a121E121GgAagGa1515AY.430.000066
ORF7a121E121GgAagGa77AY.30.00007
ORF7a121E121GgAagGa77B.1.1770.000092
ORF7a121E121GgAagGa460.222222
ORF7a121E121GgAagGa44AY.290.000063
ORF7a121E121GgAagGa44C.350.003096
ORF7a121E121GgAagGa33AY.1030.000019
ORF7a121E121GgAagGa33AY.4.50.000322
ORF7a121E121GgAagGa33B.1.1.70.000003
ORF7a121E121GgAagGa22AY.200.000078
ORF7a121E121GgAagGa22AY.390.000049
ORF7a121E121GgAagGa22AY.4.20.000043
ORF7a121E121GgAagGa22AY.91.10.00813
ORF7a121E121GgAagGa22B.1.10.000036
ORF7a121E121GgAagGa22B.1.1.3180.000604
ORF7a121E121GgAagGa22B.1.617.20.000008
ORF7a121E121GgAagGa22B.1.6210.000177
ORF7a121E121GgAagGa11A.2.40.003367
ORF7a121E121GgAagGa11AY.1000.000046
ORF7a121E121GgAagGa11AY.1020.000027
ORF7a121E121GgAagGa11AY.1180.000063
ORF7a121E121GgAagGa11AY.270.000065
ORF7a121E121GgAagGa11AY.29.10.000221
ORF7a121E121GgAagGa11AY.34.10.00051
ORF7a121E121GgAagGa11AY.420.00004
ORF7a121E121GgAagGa11AY.9.10.000084
ORF7a121E121GgAagGa11B.1.1.710.006061
ORF7a121E121GgAagGa11B.1.1110.001175
ORF7a121E121GgAagGa11B.1.3510.00003
ORF7a121E121GgAagGa11B.1.36.210.00216
ORF7a121E121GgAagGa11B.1.466.20.000391
ORF7a121E121GgAagGa11B.1.5680.001111
ORF7a121E121GgAagGa11B.1.6370.000073
ORF7a121E121GgAagGa11P.10.000016

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.