CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 121 | E121X | nonsyn | Gaa | Taa | 5180 | 5175 | 0.999035 | 27754-27756 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 121 | E121X | Gaa | Taa | 5175 | 5180 | All | 0.00099 |
ORF7a | 121 | E121X | Gaa | Taa | 1929 | 1930 | B.1.1.7 | 0.001727 |
ORF7a | 121 | E121X | Gaa | Taa | 669 | 669 | AY.111 | 0.122527 |
ORF7a | 121 | E121X | Gaa | Taa | 346 | 346 | AY.4 | 0.000539 |
ORF7a | 121 | E121X | Gaa | Taa | 303 | 303 | B.1.617.2 | 0.001141 |
ORF7a | 121 | E121X | Gaa | Taa | 196 | 196 | B.1.177 | 0.002581 |
ORF7a | 121 | E121X | Gaa | Taa | 186 | 186 | AY.43 | 0.000824 |
ORF7a | 121 | E121X | Gaa | Taa | 161 | 161 | AY.103 | 0.001 |
ORF7a | 121 | E121X | Gaa | Taa | 133 | 133 | AY.33 | 0.008881 |
ORF7a | 121 | E121X | Gaa | Taa | 88 | 88 | AY.44 | 0.000536 |
ORF7a | 121 | E121X | Gaa | Taa | 79 | 79 | AY.3 | 0.000786 |
ORF7a | 121 | E121X | Gaa | Taa | 69 | 69 | AY.29 | 0.001088 |
ORF7a | 121 | E121X | Gaa | Taa | 63 | 63 | AY.25 | 0.000379 |
ORF7a | 121 | E121X | Gaa | Taa | 60 | 60 | AY.102 | 0.001591 |
ORF7a | 121 | E121X | Gaa | Taa | 44 | 44 | AY.41 | 0.012934 |
ORF7a | 121 | E121X | Gaa | Taa | 41 | 41 | B.1.36.34 | 0.87234 |
ORF7a | 121 | E121X | Gaa | Taa | 38 | 38 | AY.20 | 0.001477 |
ORF7a | 121 | E121X | Gaa | Taa | 36 | 36 | P.1 | 0.000567 |
ORF7a | 121 | E121X | Gaa | Taa | 35 | 35 | B.1.2 | 0.000308 |
ORF7a | 121 | E121X | Gaa | Taa | 29 | 29 | B.1.1 | 0.000526 |
ORF7a | 121 | E121X | Gaa | Taa | 26 | 26 | AY.47 | 0.000809 |
ORF7a | 121 | E121X | Gaa | Taa | 26 | 26 | B.1 | 0.000238 |
ORF7a | 121 | E121X | Gaa | Taa | 26 | 26 | B.1.221 | 0.001847 |
ORF7a | 121 | E121X | Gaa | Taa | 25 | 25 | B.1.1.519 | 0.000993 |
ORF7a | 121 | E121X | Gaa | Taa | 23 | 23 | C.37 | 0.002669 |
ORF7a | 121 | E121X | Gaa | Taa | 21 | 21 | B.1.351 | 0.000624 |
ORF7a | 121 | E121X | Gaa | Taa | 20 | 20 | AY.6 | 0.000823 |
ORF7a | 121 | E121X | Gaa | Taa | 19 | 19 | B.1.621 | 0.001682 |
ORF7a | 121 | E121X | Gaa | Taa | 14 | 14 | AY.117 | 0.001183 |
ORF7a | 121 | E121X | Gaa | Taa | 14 | 14 | AY.59 | 0.007415 |
ORF7a | 121 | E121X | Gaa | Taa | 14 | 14 | B.1.160 | 0.000437 |
ORF7a | 121 | E121X | Gaa | Taa | 14 | 14 | B.1.429 | 0.000329 |
ORF7a | 121 | E121X | Gaa | Taa | 14 | 14 | B.1.526 | 0.000329 |
ORF7a | 121 | E121X | Gaa | Taa | 11 | 11 | AY.5 | 0.000227 |
ORF7a | 121 | E121X | Gaa | Taa | 11 | 11 | AY.61 | 0.001153 |
ORF7a | 121 | E121X | Gaa | Taa | 11 | 11 | B.1.617.1 | 0.001419 |
ORF7a | 121 | E121X | Gaa | Taa | 10 | 10 | AY.10 | 0.005299 |
ORF7a | 121 | E121X | Gaa | Taa | 10 | 10 | AY.39.1 | 0.000396 |
ORF7a | 121 | E121X | Gaa | Taa | 10 | 10 | AY.42 | 0.000402 |
ORF7a | 121 | E121X | Gaa | Taa | 10 | 10 | B.1.243 | 0.000696 |
ORF7a | 121 | E121X | Gaa | Taa | 9 | 9 | AY.26 | 0.000255 |
ORF7a | 121 | E121X | Gaa | Taa | 8 | 8 | B.1.177.81 | 0.001515 |
ORF7a | 121 | E121X | Gaa | Taa | 7 | 7 | AY.3.1 | 0.000597 |
ORF7a | 121 | E121X | Gaa | Taa | 7 | 7 | AY.46 | 0.000729 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 6 | 0.111111 | |
ORF7a | 121 | E121X | Gaa | Taa | 6 | 6 | AY.23 | 0.000418 |
ORF7a | 121 | E121X | Gaa | Taa | 6 | 6 | AY.34 | 0.000582 |
ORF7a | 121 | E121X | Gaa | Taa | 6 | 6 | AY.5.4 | 0.00166 |
ORF7a | 121 | E121X | Gaa | Taa | 6 | 6 | B.1.1.326 | 0.010563 |
ORF7a | 121 | E121X | Gaa | Taa | 6 | 6 | B.1.617.3 | 0.01791 |
ORF7a | 121 | E121X | Gaa | Taa | 5 | 5 | AY.109 | 0.003698 |
ORF7a | 121 | E121X | Gaa | Taa | 5 | 5 | AY.119 | 0.000177 |
ORF7a | 121 | E121X | Gaa | Taa | 5 | 5 | AY.39 | 0.000124 |
ORF7a | 121 | E121X | Gaa | Taa | 5 | 5 | AY.98 | 0.000395 |
ORF7a | 121 | E121X | Gaa | Taa | 5 | 5 | AY.99.2 | 0.000461 |
ORF7a | 121 | E121X | Gaa | Taa | 5 | 5 | B.1.351.2 | 0.001513 |
ORF7a | 121 | E121X | Gaa | Taa | 5 | 5 | P.1.17 | 0.000809 |
ORF7a | 121 | E121X | Gaa | Taa | 4 | 4 | AY.100 | 0.000184 |
ORF7a | 121 | E121X | Gaa | Taa | 4 | 4 | AY.54 | 0.000381 |
ORF7a | 121 | E121X | Gaa | Taa | 4 | 4 | AY.75 | 0.000224 |
ORF7a | 121 | E121X | Gaa | Taa | 4 | 4 | AY.9 | 0.00027 |
ORF7a | 121 | E121X | Gaa | Taa | 4 | 4 | AY.98.1 | 0.000194 |
ORF7a | 121 | E121X | Gaa | Taa | 4 | 4 | B.1.160.8 | 0.005155 |
ORF7a | 121 | E121X | Gaa | Taa | 4 | 4 | B.1.177.4 | 0.000844 |
ORF7a | 121 | E121X | Gaa | Taa | 4 | 4 | B.1.258 | 0.000266 |
ORF7a | 121 | E121X | Gaa | Taa | 4 | 4 | B.1.361 | 0.005155 |
ORF7a | 121 | E121X | Gaa | Taa | 4 | 4 | B.1.527 | 0.014815 |
ORF7a | 121 | E121X | Gaa | Taa | 4 | 4 | P.1.7 | 0.001277 |
ORF7a | 121 | E121X | Gaa | Taa | 4 | 4 | Q.8 | 0.00066 |
ORF7a | 121 | E121X | Gaa | Taa | 3 | 3 | A.2 | 0.001985 |
ORF7a | 121 | E121X | Gaa | Taa | 3 | 3 | AY.27 | 0.000194 |
ORF7a | 121 | E121X | Gaa | Taa | 3 | 3 | AY.45 | 0.000365 |
ORF7a | 121 | E121X | Gaa | Taa | 3 | 3 | AY.65 | 0.001599 |
ORF7a | 121 | E121X | Gaa | Taa | 3 | 3 | AY.77 | 0.003382 |
ORF7a | 121 | E121X | Gaa | Taa | 3 | 3 | B.1.1.189 | 0.004539 |
ORF7a | 121 | E121X | Gaa | Taa | 3 | 3 | B.1.1.241 | 0.006211 |
ORF7a | 121 | E121X | Gaa | Taa | 3 | 3 | B.1.177.75 | 0.003122 |
ORF7a | 121 | E121X | Gaa | Taa | 3 | 3 | B.1.214.2 | 0.001799 |
ORF7a | 121 | E121X | Gaa | Taa | 3 | 3 | B.1.22 | 0.003953 |
ORF7a | 121 | E121X | Gaa | Taa | 3 | 3 | B.1.396 | 0.002117 |
ORF7a | 121 | E121X | Gaa | Taa | 3 | 3 | B.1.628 | 0.001057 |
ORF7a | 121 | E121X | Gaa | Taa | 3 | 3 | P.1.1 | 0.000953 |
ORF7a | 121 | E121X | Gaa | Taa | 3 | 3 | P.1.14 | 0.000143 |
ORF7a | 121 | E121X | Gaa | Taa | 3 | 3 | Q.6 | 0.019868 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | AY.101 | 0.000981 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | AY.120 | 0.000074 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | AY.29.1 | 0.000441 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | AY.35 | 0.000466 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | AY.4.2 | 0.000043 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | AY.4.4 | 0.000818 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | AY.4.5 | 0.000215 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | AY.46.4 | 0.000329 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | AY.48 | 0.00093 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | AY.5.3 | 0.000675 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | AY.67 | 0.000929 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | AY.9.1 | 0.000167 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | AY.9.2 | 0.000073 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | B.1.1.222 | 0.000408 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | B.1.1.25 | 0.001137 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | B.1.1.317 | 0.000823 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | B.1.1.318 | 0.000604 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | B.1.1.50 | 0.001358 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | B.1.177.7 | 0.00033 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | B.1.177.86 | 0.000367 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | B.1.279 | 0.001027 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | B.1.36 | 0.000292 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | B.1.36.29 | 0.001035 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | B.1.369 | 0.00057 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | B.1.400 | 0.000858 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | B.1.438.1 | 0.000215 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | B.1.466.2 | 0.000782 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | B.1.562 | 0.037037 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | B.1.637 | 0.000146 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | C.36.3 | 0.001134 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | P.1.12 | 0.000968 |
ORF7a | 121 | E121X | Gaa | Taa | 2 | 2 | P.1.15 | 0.000465 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | A | 0.000387 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | A.2.5 | 0.000499 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | AD.2 | 0.000219 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | AU.2 | 0.002421 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | AY.113 | 0.000142 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | AY.116.1 | 0.000311 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | AY.118 | 0.000063 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | AY.12 | 0.000316 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | AY.14 | 0.000088 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | AY.24 | 0.000431 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | AY.34.1 | 0.00051 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | AY.38 | 0.000499 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | AY.46.3 | 0.000934 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | AY.58 | 0.000907 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | AY.7.1 | 0.000113 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | AY.71 | 0.000475 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | AY.73 | 0.000665 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | AY.74 | 0.000116 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | AY.84 | 0.000437 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | AY.85 | 0.000427 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | AY.93 | 0.000273 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | AY.99 | 0.001049 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.1.157 | 0.000913 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.1.216 | 0.00089 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.1.277 | 0.000759 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.1.28 | 0.000311 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.1.332 | 0.03125 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.1.348 | 0.000796 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.1.368 | 0.003086 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.1.369 | 0.000446 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.1.37 | 0.000193 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.1.404 | 0.015873 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.1.419 | 0.007407 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.1.485 | 0.016667 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.1.526 | 0.003546 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.1.58 | 0.005376 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.1.62 | 0.027027 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.1.70 | 0.000341 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.12 | 0.008 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.146 | 0.004237 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.157 | 0.002985 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.160.30 | 0.002976 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.177.16 | 0.000664 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.177.44 | 0.000519 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.177.56 | 0.000668 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.177.8 | 0.000752 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.177.83 | 0.001481 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.213 | 0.014925 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.234 | 0.000132 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.258.14 | 0.00098 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.258.17 | 0.000104 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.311 | 0.000275 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.349 | 0.000715 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.36.38 | 0.001642 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.36.8 | 0.001 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.379 | 0.017241 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.381 | 0.007812 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.398 | 0.002976 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.404 | 0.001302 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.409 | 0.000781 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.422 | 0.000812 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.468 | 0.005714 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.508 | 0.025641 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.523 | 0.002451 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.525 | 0.000113 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.561 | 0.000397 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.578 | 0.017857 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.582 | 0.000491 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.588 | 0.00091 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.595 | 0.000261 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.596 | 0.000087 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.1.619.1 | 0.000641 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.11 | 0.005128 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.3.1 | 0.001658 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.4 | 0.002208 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.4.1 | 0.018868 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.40 | 0.000364 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.41 | 0.008 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | B.58 | 0.010204 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | D.2 | 0.000075 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | P.1.16 | 0.000374 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | P.2 | 0.000187 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | P.3 | 0.001595 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | Q.1 | 0.000126 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | V.2 | 0.032258 |
ORF7a | 121 | E121X | Gaa | Taa | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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