CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 121 & Codon = Taa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a121E121XnonsynGaaTaa518051750.99903527754-27756

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a121E121XGaaTaa51755180All0.00099
ORF7a121E121XGaaTaa19291930B.1.1.70.001727
ORF7a121E121XGaaTaa669669AY.1110.122527
ORF7a121E121XGaaTaa346346AY.40.000539
ORF7a121E121XGaaTaa303303B.1.617.20.001141
ORF7a121E121XGaaTaa196196B.1.1770.002581
ORF7a121E121XGaaTaa186186AY.430.000824
ORF7a121E121XGaaTaa161161AY.1030.001
ORF7a121E121XGaaTaa133133AY.330.008881
ORF7a121E121XGaaTaa8888AY.440.000536
ORF7a121E121XGaaTaa7979AY.30.000786
ORF7a121E121XGaaTaa6969AY.290.001088
ORF7a121E121XGaaTaa6363AY.250.000379
ORF7a121E121XGaaTaa6060AY.1020.001591
ORF7a121E121XGaaTaa4444AY.410.012934
ORF7a121E121XGaaTaa4141B.1.36.340.87234
ORF7a121E121XGaaTaa3838AY.200.001477
ORF7a121E121XGaaTaa3636P.10.000567
ORF7a121E121XGaaTaa3535B.1.20.000308
ORF7a121E121XGaaTaa2929B.1.10.000526
ORF7a121E121XGaaTaa2626AY.470.000809
ORF7a121E121XGaaTaa2626B.10.000238
ORF7a121E121XGaaTaa2626B.1.2210.001847
ORF7a121E121XGaaTaa2525B.1.1.5190.000993
ORF7a121E121XGaaTaa2323C.370.002669
ORF7a121E121XGaaTaa2121B.1.3510.000624
ORF7a121E121XGaaTaa2020AY.60.000823
ORF7a121E121XGaaTaa1919B.1.6210.001682
ORF7a121E121XGaaTaa1414AY.1170.001183
ORF7a121E121XGaaTaa1414AY.590.007415
ORF7a121E121XGaaTaa1414B.1.1600.000437
ORF7a121E121XGaaTaa1414B.1.4290.000329
ORF7a121E121XGaaTaa1414B.1.5260.000329
ORF7a121E121XGaaTaa1111AY.50.000227
ORF7a121E121XGaaTaa1111AY.610.001153
ORF7a121E121XGaaTaa1111B.1.617.10.001419
ORF7a121E121XGaaTaa1010AY.100.005299
ORF7a121E121XGaaTaa1010AY.39.10.000396
ORF7a121E121XGaaTaa1010AY.420.000402
ORF7a121E121XGaaTaa1010B.1.2430.000696
ORF7a121E121XGaaTaa99AY.260.000255
ORF7a121E121XGaaTaa88B.1.177.810.001515
ORF7a121E121XGaaTaa77AY.3.10.000597
ORF7a121E121XGaaTaa77AY.460.000729
ORF7a121E121XGaaTaa260.111111
ORF7a121E121XGaaTaa66AY.230.000418
ORF7a121E121XGaaTaa66AY.340.000582
ORF7a121E121XGaaTaa66AY.5.40.00166
ORF7a121E121XGaaTaa66B.1.1.3260.010563
ORF7a121E121XGaaTaa66B.1.617.30.01791
ORF7a121E121XGaaTaa55AY.1090.003698
ORF7a121E121XGaaTaa55AY.1190.000177
ORF7a121E121XGaaTaa55AY.390.000124
ORF7a121E121XGaaTaa55AY.980.000395
ORF7a121E121XGaaTaa55AY.99.20.000461
ORF7a121E121XGaaTaa55B.1.351.20.001513
ORF7a121E121XGaaTaa55P.1.170.000809
ORF7a121E121XGaaTaa44AY.1000.000184
ORF7a121E121XGaaTaa44AY.540.000381
ORF7a121E121XGaaTaa44AY.750.000224
ORF7a121E121XGaaTaa44AY.90.00027
ORF7a121E121XGaaTaa44AY.98.10.000194
ORF7a121E121XGaaTaa44B.1.160.80.005155
ORF7a121E121XGaaTaa44B.1.177.40.000844
ORF7a121E121XGaaTaa44B.1.2580.000266
ORF7a121E121XGaaTaa44B.1.3610.005155
ORF7a121E121XGaaTaa44B.1.5270.014815
ORF7a121E121XGaaTaa44P.1.70.001277
ORF7a121E121XGaaTaa44Q.80.00066
ORF7a121E121XGaaTaa33A.20.001985
ORF7a121E121XGaaTaa33AY.270.000194
ORF7a121E121XGaaTaa33AY.450.000365
ORF7a121E121XGaaTaa33AY.650.001599
ORF7a121E121XGaaTaa33AY.770.003382
ORF7a121E121XGaaTaa33B.1.1.1890.004539
ORF7a121E121XGaaTaa33B.1.1.2410.006211
ORF7a121E121XGaaTaa33B.1.177.750.003122
ORF7a121E121XGaaTaa33B.1.214.20.001799
ORF7a121E121XGaaTaa33B.1.220.003953
ORF7a121E121XGaaTaa33B.1.3960.002117
ORF7a121E121XGaaTaa33B.1.6280.001057
ORF7a121E121XGaaTaa33P.1.10.000953
ORF7a121E121XGaaTaa33P.1.140.000143
ORF7a121E121XGaaTaa33Q.60.019868
ORF7a121E121XGaaTaa22AY.1010.000981
ORF7a121E121XGaaTaa22AY.1200.000074
ORF7a121E121XGaaTaa22AY.29.10.000441
ORF7a121E121XGaaTaa22AY.350.000466
ORF7a121E121XGaaTaa22AY.4.20.000043
ORF7a121E121XGaaTaa22AY.4.40.000818
ORF7a121E121XGaaTaa22AY.4.50.000215
ORF7a121E121XGaaTaa22AY.46.40.000329
ORF7a121E121XGaaTaa22AY.480.00093
ORF7a121E121XGaaTaa22AY.5.30.000675
ORF7a121E121XGaaTaa22AY.670.000929
ORF7a121E121XGaaTaa22AY.9.10.000167
ORF7a121E121XGaaTaa22AY.9.20.000073
ORF7a121E121XGaaTaa22B.1.1.2220.000408
ORF7a121E121XGaaTaa22B.1.1.250.001137
ORF7a121E121XGaaTaa22B.1.1.3170.000823
ORF7a121E121XGaaTaa22B.1.1.3180.000604
ORF7a121E121XGaaTaa22B.1.1.500.001358
ORF7a121E121XGaaTaa22B.1.177.70.00033
ORF7a121E121XGaaTaa22B.1.177.860.000367
ORF7a121E121XGaaTaa22B.1.2790.001027
ORF7a121E121XGaaTaa22B.1.360.000292
ORF7a121E121XGaaTaa22B.1.36.290.001035
ORF7a121E121XGaaTaa22B.1.3690.00057
ORF7a121E121XGaaTaa22B.1.4000.000858
ORF7a121E121XGaaTaa22B.1.438.10.000215
ORF7a121E121XGaaTaa22B.1.466.20.000782
ORF7a121E121XGaaTaa22B.1.5620.037037
ORF7a121E121XGaaTaa22B.1.6370.000146
ORF7a121E121XGaaTaa22C.36.30.001134
ORF7a121E121XGaaTaa22P.1.120.000968
ORF7a121E121XGaaTaa22P.1.150.000465
ORF7a121E121XGaaTaa11A0.000387
ORF7a121E121XGaaTaa11A.2.50.000499
ORF7a121E121XGaaTaa11AD.20.000219
ORF7a121E121XGaaTaa11AU.20.002421
ORF7a121E121XGaaTaa11AY.1130.000142
ORF7a121E121XGaaTaa11AY.116.10.000311
ORF7a121E121XGaaTaa11AY.1180.000063
ORF7a121E121XGaaTaa11AY.120.000316
ORF7a121E121XGaaTaa11AY.140.000088
ORF7a121E121XGaaTaa11AY.240.000431
ORF7a121E121XGaaTaa11AY.34.10.00051
ORF7a121E121XGaaTaa11AY.380.000499
ORF7a121E121XGaaTaa11AY.46.30.000934
ORF7a121E121XGaaTaa11AY.580.000907
ORF7a121E121XGaaTaa11AY.7.10.000113
ORF7a121E121XGaaTaa11AY.710.000475
ORF7a121E121XGaaTaa11AY.730.000665
ORF7a121E121XGaaTaa11AY.740.000116
ORF7a121E121XGaaTaa11AY.840.000437
ORF7a121E121XGaaTaa11AY.850.000427
ORF7a121E121XGaaTaa11AY.930.000273
ORF7a121E121XGaaTaa11AY.990.001049
ORF7a121E121XGaaTaa11B.1.1.1570.000913
ORF7a121E121XGaaTaa11B.1.1.2160.00089
ORF7a121E121XGaaTaa11B.1.1.2770.000759
ORF7a121E121XGaaTaa11B.1.1.280.000311
ORF7a121E121XGaaTaa11B.1.1.3320.03125
ORF7a121E121XGaaTaa11B.1.1.3480.000796
ORF7a121E121XGaaTaa11B.1.1.3680.003086
ORF7a121E121XGaaTaa11B.1.1.3690.000446
ORF7a121E121XGaaTaa11B.1.1.370.000193
ORF7a121E121XGaaTaa11B.1.1.4040.015873
ORF7a121E121XGaaTaa11B.1.1.4190.007407
ORF7a121E121XGaaTaa11B.1.1.4850.016667
ORF7a121E121XGaaTaa11B.1.1.5260.003546
ORF7a121E121XGaaTaa11B.1.1.580.005376
ORF7a121E121XGaaTaa11B.1.1.620.027027
ORF7a121E121XGaaTaa11B.1.1.700.000341
ORF7a121E121XGaaTaa11B.1.120.008
ORF7a121E121XGaaTaa11B.1.1460.004237
ORF7a121E121XGaaTaa11B.1.1570.002985
ORF7a121E121XGaaTaa11B.1.160.300.002976
ORF7a121E121XGaaTaa11B.1.177.160.000664
ORF7a121E121XGaaTaa11B.1.177.440.000519
ORF7a121E121XGaaTaa11B.1.177.560.000668
ORF7a121E121XGaaTaa11B.1.177.80.000752
ORF7a121E121XGaaTaa11B.1.177.830.001481
ORF7a121E121XGaaTaa11B.1.2130.014925
ORF7a121E121XGaaTaa11B.1.2340.000132
ORF7a121E121XGaaTaa11B.1.258.140.00098
ORF7a121E121XGaaTaa11B.1.258.170.000104
ORF7a121E121XGaaTaa11B.1.3110.000275
ORF7a121E121XGaaTaa11B.1.3490.000715
ORF7a121E121XGaaTaa11B.1.36.380.001642
ORF7a121E121XGaaTaa11B.1.36.80.001
ORF7a121E121XGaaTaa11B.1.3790.017241
ORF7a121E121XGaaTaa11B.1.3810.007812
ORF7a121E121XGaaTaa11B.1.3980.002976
ORF7a121E121XGaaTaa11B.1.4040.001302
ORF7a121E121XGaaTaa11B.1.4090.000781
ORF7a121E121XGaaTaa11B.1.4220.000812
ORF7a121E121XGaaTaa11B.1.4680.005714
ORF7a121E121XGaaTaa11B.1.5080.025641
ORF7a121E121XGaaTaa11B.1.5230.002451
ORF7a121E121XGaaTaa11B.1.5250.000113
ORF7a121E121XGaaTaa11B.1.5610.000397
ORF7a121E121XGaaTaa11B.1.5780.017857
ORF7a121E121XGaaTaa11B.1.5820.000491
ORF7a121E121XGaaTaa11B.1.5880.00091
ORF7a121E121XGaaTaa11B.1.5950.000261
ORF7a121E121XGaaTaa11B.1.5960.000087
ORF7a121E121XGaaTaa11B.1.619.10.000641
ORF7a121E121XGaaTaa11B.110.005128
ORF7a121E121XGaaTaa11B.3.10.001658
ORF7a121E121XGaaTaa11B.40.002208
ORF7a121E121XGaaTaa11B.4.10.018868
ORF7a121E121XGaaTaa11B.400.000364
ORF7a121E121XGaaTaa11B.410.008
ORF7a121E121XGaaTaa11B.580.010204
ORF7a121E121XGaaTaa11D.20.000075
ORF7a121E121XGaaTaa11P.1.160.000374
ORF7a121E121XGaaTaa11P.20.000187
ORF7a121E121XGaaTaa11P.30.001595
ORF7a121E121XGaaTaa11Q.10.000126
ORF7a121E121XGaaTaa11V.20.032258
ORF7a121E121XGaaTaa11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.