CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 121

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a121E121XnonsynGaaTaa518051750.99903527754-27756
ORF7a121E121XnonsynGAaTGa518030.00057915127754-27756
ORF7a121E121XnonsynGaATaG518020.000386127754-27756
ORF7a121E121deldelGAA---20002000127754-27756
ORF7a121E121AnonsyngAagCa11771177127754-27756
ORF7a121E121EsyngaAgaG573573127754-27756
ORF7a121E121VnonsyngAagTa517517127754-27756
ORF7a121E121QnonsynGaaCaa475475127754-27756
ORF7a121E121GnonsyngAagGa2562530.98828127754-27756
ORF7a121E121GnonsyngAAgGG25630.011718827754-27756
ORF7a121E121del1delgaAga-2231690.75784827754-27756
ORF7a121E121del1delGaa-aa223470.21076227754-27756
ORF7a121E121del1delgAag-a22370.031390127754-27756
ORF7a121E121KnonsynGaaAaa1641570.95731727754-27756
ORF7a121E121KnonsynGaAAaG16470.042682927754-27756
ORF7a121E121del2delGAa--a85800.94117627754-27756
ORF7a121E121del2delgAAg--8550.058823527754-27756
ORF7a121E121DnonsyngaAgaT59310.52542427754-27756
ORF7a121E121DnonsyngaAgaC59280.47457627754-27756
ORF7a121E121WnonsynGAATGG22127754-27756
ORF7a121E121TnonsynGAaACa210.527754-27756
ORF7a121E121TnonsynGAAACT210.527754-27756
ORF7a121E121NnonsynGaAAaC210.527754-27756
ORF7a121E121NnonsynGaAAaT210.527754-27756
ORF7a121E121InonsynGAAATT11127754-27756
ORF7a121E121HnonsynGaACaT11127754-27756
ORF7a121E121RnonsynGAAAGG11127754-27756
ORF7a121E121LnonsynGAaTTa11127754-27756
ORF7a121E121SnonsynGAaTCa11127754-27756

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a121E121XGaaTaa51755180All0.00099
ORF7a121E121XGAaTGa35180All0.000001
ORF7a121E121XGaATaG25180All0
ORF7a121E121delGAA---20002000All0.000383
ORF7a121E121XGaaTaa19291930B.1.1.70.001727
ORF7a121E121XGAaTGa11930B.1.1.70.000001
ORF7a121E121AgAagCa11771177All0.000225
ORF7a121E121delGAA---11311131B.1.1.70.001012
ORF7a121E121AgAagCa10251025B.1.438.10.109943
ORF7a121E121XGaaTaa669669AY.1110.122527
ORF7a121E121EgaAgaG573573All0.00011
ORF7a121E121VgAagTa517517All0.000099
ORF7a121E121QGaaCaa475475All0.000091
ORF7a121E121EgaAgaG358358B.1.1.2220.073031
ORF7a121E121XGaaTaa346346AY.40.000539
ORF7a121E121XGaaTaa303303B.1.617.20.001141
ORF7a121E121QGaaCaa281281B.1.1.70.000252
ORF7a121E121VgAagTa270270B.1.177.230.873786
ORF7a121E121GgAagGa253256All0.000048
ORF7a121E121GgAAgGG3256All0.000001
ORF7a121E121delGAA---240240AY.40.000374
ORF7a121E121del1gaAga-169223All0.000032
ORF7a121E121del1Gaa-aa47223All0.000009
ORF7a121E121del1gAag-a7223All0.000001
ORF7a121E121XGaaTaa196196B.1.1770.002581
ORF7a121E121XGaaTaa186186AY.430.000824
ORF7a121E121GgAagGa170170AY.40.000265
ORF7a121E121del1gaAga-163170B.1.1.70.000146
ORF7a121E121del1Gaa-aa5170B.1.1.70.000004
ORF7a121E121del1gAag-a2170B.1.1.70.000002
ORF7a121E121KGaaAaa157164All0.00003
ORF7a121E121KGaAAaG7164All0.000001
ORF7a121E121XGaaTaa161161AY.1030.001
ORF7a121E121VgAagTa143143AY.4.20.003101
ORF7a121E121XGaaTaa133133AY.330.008881
ORF7a121E121KGaaAaa109109AY.40.00017
ORF7a121E121XGaaTaa8888AY.440.000536
ORF7a121E121del2GAa--a8085All0.000015
ORF7a121E121del2gAAg--585All0.000001
ORF7a121E121XGaaTaa7979AY.30.000786
ORF7a121E121AgAagCa7575B.1.1.70.000067
ORF7a121E121XGaaTaa6969AY.290.001088
ORF7a121E121XGaaTaa6363AY.250.000379
ORF7a121E121EgaAgaG6363B.1.1.70.000056
ORF7a121E121XGaaTaa6060AY.1020.001591
ORF7a121E121DgaAgaT3159All0.000006
ORF7a121E121DgaAgaC2859All0.000005
ORF7a121E121delGAA---5353AY.250.000319
ORF7a121E121XGaaTaa4444AY.410.012934
ORF7a121E121delGAA---4242P.10.000662
ORF7a121E121XGaaTaa4141B.1.36.340.87234
ORF7a121E121XGaaTaa3838AY.200.001477
ORF7a121E121delGAA---3636B.1.20.000317
ORF7a121E121XGaaTaa3636P.10.000567
ORF7a121E121XGaaTaa3535B.1.20.000308
ORF7a121E121delGAA---3232AY.1030.000199
ORF7a121E121EgaAgaG3232P.10.000504
ORF7a121E121XGaaTaa2929B.1.10.000526
ORF7a121E121AgAagCa2626AY.1030.000161
ORF7a121E121XGaaTaa2626AY.470.000809
ORF7a121E121XGaaTaa2626B.10.000238
ORF7a121E121XGaaTaa2626B.1.2210.001847
ORF7a121E121XGaaTaa2525B.1.1.5190.000993
ORF7a121E121delGAA---2323B.1.617.20.000087
ORF7a121E121XGaaTaa2323C.370.002669
ORF7a121E121delGAA---2222AY.430.000097
ORF7a121E121QGaaCaa2222AY.440.000134
ORF7a121E121delGAA---2222B.1.4270.001111
ORF7a121E121XGaaTaa2121B.1.3510.000624
ORF7a121E121XGaaTaa2020AY.60.000823
ORF7a121E121delGAA---1919AY.290.0003
ORF7a121E121delGAA---1919B.1.10.000345
ORF7a121E121XGaaTaa1919B.1.6210.001682
ORF7a121E121delGAA---1818C.370.002089
ORF7a121E121del1Gaa-aa1616AY.250.000096
ORF7a121E121EgaAgaG1616AY.250.000096
ORF7a121E121delGAA---1515AY.30.000149
ORF7a121E121GgAagGa1515AY.430.000066
ORF7a121E121delGAA---1515B.1.1770.000198
ORF7a121E121QGaaCaa1515B.1.20.000132
ORF7a121E121delGAA---1414AY.1110.002564
ORF7a121E121XGaaTaa1414AY.1170.001183
ORF7a121E121XGaaTaa1414AY.590.007415
ORF7a121E121delGAA---1414B.10.000128
ORF7a121E121del2GAa--a1414B.1.1.370.0027
ORF7a121E121del2GAa--a1314B.1.1.70.000012
ORF7a121E121KGaaAaa814B.1.1.70.000007
ORF7a121E121KGaAAaG614B.1.1.70.000005
ORF7a121E121del2gAAg--114B.1.1.70.000001
ORF7a121E121XGaaTaa1414B.1.1600.000437
ORF7a121E121XGaaTaa1414B.1.4290.000329
ORF7a121E121XGaaTaa1414B.1.5260.000329
ORF7a121E121QGaaCaa1414P.10.000221
ORF7a121E121delGAA---1313AY.390.000321
ORF7a121E121delGAA---1313AY.440.000079
ORF7a121E121VgAagTa1313B.1.1770.000171
ORF7a121E121EgaAgaG1313B.1.20.000114
ORF7a121E121AgAagCa1212AY.3.10.001023
ORF7a121E121QGaaCaa1212AY.40.000019
ORF7a121E121del2GAa--a1212AY.460.001249
ORF7a121E121delGAA---1111AY.260.000311
ORF7a121E121XGaaTaa1111AY.50.000227
ORF7a121E121XGaaTaa1111AY.610.001153
ORF7a121E121XGaaTaa1111B.1.617.10.001419
ORF7a121E121QGaaCaa1111B.1.617.20.000041
ORF7a121E121EgaAgaG1111D.20.000825
ORF7a121E121delGAA---1111Q.80.001814
ORF7a121E121XGaaTaa1010AY.100.005299
ORF7a121E121XGaaTaa1010AY.39.10.000396
ORF7a121E121XGaaTaa1010AY.420.000402
ORF7a121E121QGaaCaa1010B.1.1.1890.015129
ORF7a121E121delGAA---1010B.1.1.2140.000555
ORF7a121E121VgAagTa1010B.1.1.70.000009
ORF7a121E121delGAA---1010B.1.2340.001319
ORF7a121E121XGaaTaa1010B.1.2430.000696
ORF7a121E121XGaaTaa99AY.260.000255
ORF7a121E121EgaAgaG99AY.40.000014
ORF7a121E121VgAagTa99AY.440.000055
ORF7a121E121DgaAgaT89B.1.1.70.000007
ORF7a121E121DgaAgaC19B.1.1.70.000001
ORF7a121E121EgaAgaG99B.1.1770.000119
ORF7a121E121VgAagTa88AY.250.000048
ORF7a121E121EgaAgaG88B.1.10.000145
ORF7a121E121DgaAgaT88B.1.177.620.009535
ORF7a121E121XGaaTaa88B.1.177.810.001515
ORF7a121E121VgAagTa88B.1.2580.000532
ORF7a121E121delGAA---88B.1.4290.000188
ORF7a121E121DgaAgaC77AY.1000.000322
ORF7a121E121EgaAgaG77AY.1060.002344
ORF7a121E121GgAagGa77AY.30.00007
ORF7a121E121XGaaTaa77AY.3.10.000597
ORF7a121E121XGaaTaa77AY.460.000729
ORF7a121E121delGAA---77AY.50.000145
ORF7a121E121EgaAgaG77B.10.000064
ORF7a121E121GgAagGa77B.1.1770.000092
ORF7a121E121del1Gaa-aa67B.1.20.000053
ORF7a121E121del1gAag-a17B.1.20.000009
ORF7a121E121delGAA---77B.1.258.170.000728
ORF7a121E121EgaAgaG77B.550.020649
ORF7a121E121GgAagGa460.222222
ORF7a121E121XGaaTaa260.111111
ORF7a121E121XGAaTGa260.111111
ORF7a121E121XGaATaG260.111111
ORF7a121E121GgAAgGG260.111111
ORF7a121E121XGaaTaa66AY.230.000418
ORF7a121E121del2GAa--a66AY.250.000036
ORF7a121E121XGaaTaa66AY.340.000582
ORF7a121E121AgAagCa66AY.40.000009
ORF7a121E121KGaaAaa66AY.470.000187
ORF7a121E121XGaaTaa66AY.5.40.00166
ORF7a121E121DgaAgaC66AY.7.20.003356
ORF7a121E121XGaaTaa66B.1.1.3260.010563
ORF7a121E121delGAA---66B.1.1.5190.000238
ORF7a121E121QGaaCaa66B.1.1770.000079
ORF7a121E121XGaaTaa66B.1.617.30.01791
ORF7a121E121XGaaTaa55AY.1090.003698
ORF7a121E121XGaaTaa55AY.1190.000177
ORF7a121E121VgAagTa55AY.30.00005
ORF7a121E121XGaaTaa55AY.390.000124
ORF7a121E121VgAagTa55AY.40.000008
ORF7a121E121EgaAgaG55AY.430.000022
ORF7a121E121QGaaCaa55AY.430.000022
ORF7a121E121del2GAa--a55AY.440.00003
ORF7a121E121XGaaTaa55AY.980.000395
ORF7a121E121XGaaTaa55AY.99.20.000461
ORF7a121E121QGaaCaa55B.10.000046
ORF7a121E121QGaaCaa55B.1.10.000091
ORF7a121E121delGAA---55B.1.1.3180.001509
ORF7a121E121QGaaCaa55B.1.160.280.01462
ORF7a121E121AgAagCa55B.1.177.730.002831
ORF7a121E121delGAA---55B.1.2430.000348
ORF7a121E121QGaaCaa55B.1.2650.006353
ORF7a121E121delGAA---55B.1.3510.000149
ORF7a121E121VgAagTa55B.1.3510.000149
ORF7a121E121XGaaTaa55B.1.351.20.001513
ORF7a121E121delGAA---55B.1.5260.000118
ORF7a121E121VgAagTa55B.1.617.20.000019
ORF7a121E121del2gAAg--35B.1.617.20.000011
ORF7a121E121del2GAa--a25B.1.617.20.000008
ORF7a121E121delGAA---55B.1.6210.000443
ORF7a121E121QGaaCaa55P.1.100.001347
ORF7a121E121delGAA---55P.1.140.000239
ORF7a121E121XGaaTaa55P.1.170.000809
ORF7a121E121delGAA---55P.20.000933
ORF7a121E121KGaaAaa44A.2.30.018957
ORF7a121E121XGaaTaa44AY.1000.000184
ORF7a121E121QGaaCaa44AY.1030.000025
ORF7a121E121delGAA---44AY.1140.000924
ORF7a121E121del2GAa--a44AY.260.000113
ORF7a121E121GgAagGa44AY.290.000063
ORF7a121E121del2GAa--a44AY.40.000006
ORF7a121E121QGaaCaa44AY.4.20.000087
ORF7a121E121KGaaAaa44AY.4.30.003367
ORF7a121E121XGaaTaa44AY.540.000381
ORF7a121E121XGaaTaa44AY.750.000224
ORF7a121E121delGAA---44AY.790.004843
ORF7a121E121XGaaTaa44AY.90.00027
ORF7a121E121XGaaTaa44AY.98.10.000194
ORF7a121E121AgAagCa44B.10.000037
ORF7a121E121delGAA---44B.1.1.2840.00043
ORF7a121E121XGaaTaa44B.1.160.80.005155
ORF7a121E121delGAA---44B.1.177.210.000306
ORF7a121E121XGaaTaa44B.1.177.40.000844
ORF7a121E121delGAA---44B.1.177.70.000659
ORF7a121E121XGaaTaa44B.1.2580.000266
ORF7a121E121delGAA---44B.1.351.20.00121
ORF7a121E121XGaaTaa44B.1.3610.005155
ORF7a121E121QGaaCaa44B.1.4270.000202
ORF7a121E121XGaaTaa44B.1.5270.014815
ORF7a121E121QGaaCaa44B.1.617.10.000516
ORF7a121E121GgAagGa44C.350.003096
ORF7a121E121KGaaAaa44D.20.0003
ORF7a121E121del1Gaa-aa44P.10.000063
ORF7a121E121delGAA---44P.1.150.000929
ORF7a121E121XGaaTaa44P.1.70.001277
ORF7a121E121XGaaTaa44Q.80.00066
ORF7a121E121XGaaTaa33A.20.001985
ORF7a121E121QGaaCaa33AY.100.00159
ORF7a121E121del1Gaa-aa33AY.1030.000019
ORF7a121E121GgAagGa33AY.1030.000019
ORF7a121E121QGaaCaa33AY.116.10.000934
ORF7a121E121delGAA---33AY.1200.000112
ORF7a121E121QGaaCaa33AY.200.000117
ORF7a121E121VgAagTa33AY.200.000117
ORF7a121E121XGaaTaa33AY.270.000194
ORF7a121E121EgaAgaG33AY.290.000047
ORF7a121E121GgAagGa33AY.4.50.000322
ORF7a121E121KGaaAaa23AY.430.000009
ORF7a121E121KGaAAaG13AY.430.000004
ORF7a121E121del1gaAga-13AY.440.000006
ORF7a121E121del1gAag-a13AY.440.000006
ORF7a121E121del1Gaa-aa13AY.440.000006
ORF7a121E121XGaaTaa33AY.450.000365
ORF7a121E121QGaaCaa33AY.50.000062
ORF7a121E121QGaaCaa33AY.610.000314
ORF7a121E121XGaaTaa33AY.650.001599
ORF7a121E121XGaaTaa33AY.770.003382
ORF7a121E121KGaaAaa33B.10.000027
ORF7a121E121XGaaTaa33B.1.1.1890.004539
ORF7a121E121XGaaTaa33B.1.1.2410.006211
ORF7a121E121delGAA---33B.1.1.4340.001046
ORF7a121E121del2GAa--a33B.1.1.5190.000119
ORF7a121E121delGAA---33B.1.1.580.016129
ORF7a121E121GgAagGa33B.1.1.70.000003
ORF7a121E121VgAagTa33B.1.177.460.002755
ORF7a121E121XGaaTaa33B.1.177.750.003122
ORF7a121E121XGaaTaa33B.1.214.20.001799
ORF7a121E121XGaaTaa33B.1.220.003953
ORF7a121E121AgAagCa33B.1.2210.000213
ORF7a121E121delGAA---33B.1.2580.0002
ORF7a121E121AgAagCa33B.1.2580.0002
ORF7a121E121delGAA---33B.1.360.000438
ORF7a121E121XGaaTaa33B.1.3960.002117
ORF7a121E121del1gaAga-23B.1.4290.000047
ORF7a121E121del1Gaa-aa13B.1.4290.000024
ORF7a121E121delGAA---33B.1.5250.000339
ORF7a121E121delGAA---33B.1.5960.000261
ORF7a121E121AgAagCa33B.1.617.20.000011
ORF7a121E121delGAA---33B.1.621.10.001517
ORF7a121E121delGAA---33B.1.6260.017143
ORF7a121E121delGAA---33B.1.6280.001057
ORF7a121E121XGaaTaa33B.1.6280.001057
ORF7a121E121delGAA---33B.1.6370.000219
ORF7a121E121XGaaTaa33P.1.10.000953
ORF7a121E121XGaaTaa33P.1.140.000143
ORF7a121E121delGAA---33Q.10.000379
ORF7a121E121XGaaTaa33Q.60.019868
ORF7a121E121EgaAgaG220.111111
ORF7a121E121WGAATGG220.111111
ORF7a121E121DgaAgaC22A0.000774
ORF7a121E121WGAATGG22All0
ORF7a121E121TGAAACT12All0
ORF7a121E121TGAaACa12All0
ORF7a121E121NGaAAaT12All0
ORF7a121E121NGaAAaC12All0
ORF7a121E121XGaaTaa22AY.1010.000981
ORF7a121E121delGAA---22AY.1020.000053
ORF7a121E121VgAagTa22AY.1030.000012
ORF7a121E121delGAA---22AY.1080.002205
ORF7a121E121delGAA---22AY.1170.000169
ORF7a121E121delGAA---22AY.1190.000071
ORF7a121E121XGaaTaa22AY.1200.000074
ORF7a121E121delGAA---22AY.1210.000271
ORF7a121E121GgAagGa22AY.200.000078
ORF7a121E121delGAA---22AY.200.000078
ORF7a121E121QGaaCaa22AY.250.000012
ORF7a121E121XGaaTaa22AY.29.10.000441
ORF7a121E121QGaaCaa22AY.30.00002
ORF7a121E121delGAA---22AY.300.000791
ORF7a121E121QGaaCaa22AY.320.001065
ORF7a121E121XGaaTaa22AY.350.000466
ORF7a121E121GgAagGa22AY.390.000049
ORF7a121E121delGAA---22AY.4.20.000043
ORF7a121E121XGaaTaa22AY.4.20.000043
ORF7a121E121GgAagGa22AY.4.20.000043
ORF7a121E121XGaaTaa22AY.4.40.000818
ORF7a121E121XGaaTaa22AY.4.50.000215
ORF7a121E121EgaAgaG22AY.440.000012
ORF7a121E121KGaaAaa22AY.440.000012
ORF7a121E121AgAagCa22AY.440.000012
ORF7a121E121XGaaTaa22AY.46.40.000329
ORF7a121E121delGAA---22AY.470.000062
ORF7a121E121XGaaTaa22AY.480.00093
ORF7a121E121DgaAgaC22AY.50.000041
ORF7a121E121XGaaTaa22AY.5.30.000675
ORF7a121E121del2GAa--a22AY.590.001059
ORF7a121E121VgAagTa22AY.60.000082
ORF7a121E121delGAA---22AY.60.000082
ORF7a121E121XGaaTaa22AY.670.000929
ORF7a121E121XGaaTaa22AY.9.10.000167
ORF7a121E121XGaaTaa22AY.9.20.000073
ORF7a121E121GgAagGa22AY.91.10.00813
ORF7a121E121delGAA---22AY.940.000885
ORF7a121E121VgAagTa22B0.000256
ORF7a121E121VgAagTa22B.10.000018
ORF7a121E121DgaAgaT22B.1.10.000036
ORF7a121E121GgAagGa22B.1.10.000036
ORF7a121E121del2GAa--a22B.1.10.000036
ORF7a121E121delGAA---22B.1.1.10.000653
ORF7a121E121XGaaTaa22B.1.1.2220.000408
ORF7a121E121VgAagTa22B.1.1.2440.030769
ORF7a121E121XGaaTaa22B.1.1.250.001137
ORF7a121E121XGaaTaa22B.1.1.3170.000823
ORF7a121E121GgAagGa22B.1.1.3180.000604
ORF7a121E121XGaaTaa22B.1.1.3180.000604
ORF7a121E121XGaaTaa22B.1.1.500.001358
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