CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 120 & Codon = acT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a120T120TsynacAacT207620.29951727751-27753

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a120T120TacAacT62207All0.000012
ORF7a120T120TacAacT23102B.1.1.70.000021
ORF7a120T120TacAacT1314B.1.2580.000865
ORF7a120T120TacAacT28B.10.000018
ORF7a120T120TacAacT18B.1.20.000009
ORF7a120T120TacAacT450.222222
ORF7a120T120TacAacT45D.20.0003
ORF7a120T120TacAacT13B.1.10.000018
ORF7a120T120TacAacT22B.1.2400.000431
ORF7a120T120TacAacT22P.10.000032
ORF7a120T120TacAacT11A.250.018182
ORF7a120T120TacAacT11AY.4.50.000107
ORF7a120T120TacAacT11B.1.1.250.000569
ORF7a120T120TacAacT11B.1.1.4110.014706
ORF7a120T120TacAacT11B.1.120.008
ORF7a120T120TacAacT11B.1.177.150.000631
ORF7a120T120TacAacT11B.1.5750.000303
ORF7a120T120TacAacT11B.1.6210.000089
ORF7a120T120TacAacT11B.1.6310.003367
ORF7a120T120TacAacT11P.1.150.000232

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.