CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 120 & Codon = aTa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a120T120InonsynaCaaTa263871426386780.99998627751-27753

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a120T120IaCaaTa26386782638714All0.504678
ORF7a120T120IaCaaTa627664627668AY.40.97691
ORF7a120T120IaCaaTa256420256424B.1.617.20.965528
ORF7a120T120IaCaaTa217667217667AY.430.964366
ORF7a120T120IaCaaTa158771158771AY.250.954979
ORF7a120T120IaCaaTa153048153048AY.1030.950284
ORF7a120T120IaCaaTa152515152521AY.440.928322
ORF7a120T120IaCaaTa9554195541AY.30.950288
ORF7a120T120IaCaaTa6332163321AY.290.998801
ORF7a120T120IaCaaTa4581645816AY.50.946064
ORF7a120T120IaCaaTa4578745787AY.4.20.99306
ORF7a120T120IaCaaTa3723137231AY.1020.987141
ORF7a120T120IaCaaTa3368533686AY.260.953628
ORF7a120T120IaCaaTa3064930649AY.470.953342
ORF7a120T120IaCaaTa2904829051AY.390.717819
ORF7a120T120IaCaaTa2680926809AY.1190.946579
ORF7a120T120IaCaaTa2613726137AY.9.20.960001
ORF7a120T120IaCaaTa2603026030AY.1200.967766
ORF7a120T120IaCaaTa2468324683AY.39.10.977777
ORF7a120T120IaCaaTa2451024510AY.200.952585
ORF7a120T120IaCaaTa2363123631AY.60.971909
ORF7a120T120IaCaaTa2337223372AY.420.940258
ORF7a120T120IaCaaTa1985219852AY.98.10.961449
ORF7a120T120IaCaaTa1953419534AY.1000.898693
ORF7a120T120IaCaaTa1647016470AY.750.922689
ORF7a120T120IaCaaTa1524115241AY.1180.95483
ORF7a120T120IaCaaTa1455714557AY.270.94214
ORF7a120T120IaCaaTa1419614196AY.90.959578
ORF7a120T120IaCaaTa1395413954AY.330.93182
ORF7a120T120IaCaaTa1324313243AY.46.60.956242
ORF7a120T120IaCaaTa1279612796AY.230.892516
ORF7a120T120IaCaaTa1197311973AY.980.945809
ORF7a120T120IaCaaTa1167011670AY.9.10.97706
ORF7a120T120IaCaaTa1118711187AY.3.10.95379
ORF7a120T120IaCaaTa1111411114AY.1170.939317
ORF7a120T120IaCaaTa1089610896AY.140.958986
ORF7a120T120IaCaaTa1038510385AY.99.20.957055
ORF7a120T120IaCaaTa99979997AY.340.969359
ORF7a120T120IaCaaTa98239823AY.540.936594
ORF7a120T120IaCaaTa94249424AY.610.987427
ORF7a120T120IaCaaTa89438943AY.460.930787
ORF7a120T120IaCaaTa87148714AY.4.50.936687
ORF7a120T120IaCaaTa86978710AY.1100.980054
ORF7a120T120IaCaaTa84808480AY.740.980687
ORF7a120T120IaCaaTa82988298AY.7.10.935197
ORF7a120T120IaCaaTa75507550AY.450.918715
ORF7a120T120IaCaaTa68896889AY.1210.932206
ORF7a120T120IaCaaTa66536653AY.1130.947316
ORF7a120T120IaCaaTa65336533AY.4.2.10.973331
ORF7a120T120IaCaaTa63886388AY.360.946791
ORF7a120T120IaCaaTa59215921AY.130.953155
ORF7a120T120IaCaaTa58985898AY.46.40.970225
ORF7a120T120IaCaaTa53445344AY.690.997573
ORF7a120T120IaCaaTa52595259AY.1110.963187
ORF7a120T120IaCaaTa49224922AY.46.50.976587
ORF7a120T120IaCaaTa48814881AY.70.956684
ORF7a120T120IaCaaTa46784678AY.700.975396
ORF7a120T120IaCaaTa46054605AY.75.10.830328
ORF7a120T120IaCaaTa45084508AY.29.10.994046
ORF7a120T120IaCaaTa42304230AY.350.985784
ORF7a120T120IaCaaTa40654065AY.1140.93945
ORF7a120T120IaCaaTa36043604AY.930.984162
ORF7a120T120IaCaaTa34233423AY.5.40.94715
ORF7a120T120IaCaaTa33273327AY.1160.954115
ORF7a120T120IaCaaTa33133313AY.410.973839
ORF7a120T120IaCaaTa32643264AY.530.93847
ORF7a120T120IaCaaTa31863186AY.680.87216
ORF7a120T120IaCaaTa30493049AY.920.875898
ORF7a120T120IaCaaTa30033003AY.116.10.935223
ORF7a120T120IaCaaTa30013001AY.370.948483
ORF7a120T120IaCaaTa29102910AY.120.10.934189
ORF7a120T120IaCaaTa28392839AY.1060.95077
ORF7a120T120IaCaaTa28292829AY.5.30.954453
ORF7a120T120IaCaaTa26662666AY.20.94943
ORF7a120T120IaCaaTa25752575AY.120.813843
ORF7a120T120IaCaaTa25372537AY.630.981431
ORF7a120T120IaCaaTa24402440AY.10.965572
ORF7a120T120IaCaaTa24192419AY.300.957262
ORF7a120T120IaCaaTa24012401AY.160.911541
ORF7a120T120IaCaaTa23942394AY.23.10.999165
ORF7a120T120IaCaaTa23692369AY.4.40.969313
ORF7a120T120IaCaaTa22102210AY.240.952586
ORF7a120T120IaCaaTa22092209AY.620.962527
ORF7a120T120IaCaaTa21852185AY.940.967242
ORF7a120T120IaCaaTa21622162AY.850.923537
ORF7a120T120IaCaaTa20162016AY.840.88189
ORF7a120T120IaCaaTa19971997AY.670.927112
ORF7a120T120IaCaaTa19821982AY.1070.923579
ORF7a120T120IaCaaTa19561956AY.710.929216
ORF7a120T120IaCaaTa19281928AY.120.2.10.960638
ORF7a120T120IaCaaTa19231923AY.34.10.980622
ORF7a120T120IaCaaTa19191919AY.1010.941148
ORF7a120T120IaCaaTa18871887AY.380.942087
ORF7a120T120IaCaaTa18761877B.1.1.70.001679
ORF7a120T120IaCaaTa18451845AY.480.85814
ORF7a120T120IaCaaTa17951795AY.100.951245
ORF7a120T120IaCaaTa17641764AY.590.934322
ORF7a120T120IaCaaTa17391740AY.320.925985
ORF7a120T120IaCaaTa16891689AY.7.20.944631
ORF7a120T120IaCaaTa16271627AY.80.986061
ORF7a120T120IaCaaTa15721572AY.640.935714
ORF7a120T120IaCaaTa15391539AY.46.20.977764
ORF7a120T120IaCaaTa15101510AY.570.990814
ORF7a120T120IaCaaTa14821482AY.730.986028
ORF7a120T120IaCaaTa14741474AY.1050.94791
ORF7a120T120IaCaaTa14541454AY.650.775053
ORF7a120T120IaCaaTa14301430AY.900.978782
ORF7a120T120IaCaaTa14201420B.1.20.012504
ORF7a120T120IaCaaTa13451345AY.4.10.991888
ORF7a120T120IaCaaTa13101310AY.39.1.10.949275
ORF7a120T120IaCaaTa12851285Q.20.788344
ORF7a120T120IaCaaTa12821282AY.910.93645
ORF7a120T120IaCaaTa12541254AY.1090.927515
ORF7a120T120IaCaaTa12291229AY.500.982414
ORF7a120T120IaCaaTa11771177AY.860.976763
ORF7a120T120IaCaaTa11531153AY.4.30.970539
ORF7a120T120IaCaaTa11321132AY.870.942548
ORF7a120T120IaCaaTa11181118AY.950.850837
ORF7a120T120IaCaaTa10521052AY.510.956364
ORF7a120T120IaCaaTa10361036AY.46.30.96732
ORF7a120T120IaCaaTa10221022AY.600.958724
ORF7a120T120IaCaaTa10081008AY.580.914701
ORF7a120T120IaCaaTa955955AY.550.876147
ORF7a120T120IaCaaTa933933AY.880.824934
ORF7a120T120IaCaaTa891891AY.46.10.914784
ORF7a120T120IaCaaTa878878AY.1080.968026
ORF7a120T120IaCaaTa847847AY.520.689739
ORF7a120T120IaCaaTa846846AY.800.954853
ORF7a120T120IaCaaTa844844AY.990.885624
ORF7a120T120IaCaaTa838838AY.400.8081
ORF7a120T120IaCaaTa823823AY.770.927847
ORF7a120T120IaCaaTa809809AY.660.865241
ORF7a120T120IaCaaTa807807AY.790.976998
ORF7a120T120IaCaaTa759759B.1.177.180.88051
ORF7a120T120IaCaaTa755755AY.190.860889
ORF7a120T120IaCaaTa731731AY.110.978581
ORF7a120T120IaCaaTa721721B.10.006604
ORF7a120T120IaCaaTa719719AY.720.978231
ORF7a120T120IaCaaTa710710AY.120.20.912596
ORF7a120T120IaCaaTa656656AY.820.890095
ORF7a120T120IaCaaTa643643AY.39.20.990755
ORF7a120T120IaCaaTa630630AY.99.10.978261
ORF7a120T120IaCaaTa628628AY.780.967643
ORF7a120T120IaCaaTa624624AY.16.10.293233
ORF7a120T120IaCaaTa580580AY.560.930979
ORF7a120T120IaCaaTa562562AY.970.955782
ORF7a120T120IaCaaTa525525AY.280.992439
ORF7a120T120IaCaaTa505505AY.9.2.10.998024
ORF7a120T120IaCaaTa503503AY.210.954459
ORF7a120T120IaCaaTa466466AY.830.803448
ORF7a120T120IaCaaTa465465AY.220.972803
ORF7a120T120IaCaaTa464464AY.810.924303
ORF7a120T120IaCaaTa445445AY.150.988889
ORF7a120T120IaCaaTa434434AY.1040.861111
ORF7a120T120IaCaaTa389389AY.5.20.958128
ORF7a120T120IaCaaTa338338B.1.1770.004451
ORF7a120T120IaCaaTa297297AY.960.616183
ORF7a120T120IaCaaTa254254AY.5.10.954887
ORF7a120T120IaCaaTa249249AY.490.795527
ORF7a120T120IaCaaTa238238AY.91.10.96748
ORF7a120T120IaCaaTa203203AY.760.980676
ORF7a120T120IaCaaTa195195AY.890.955882
ORF7a120T120IaCaaTa134134AY.1150.697917
ORF7a120T120IaCaaTa112112AY.170.918033
ORF7a120T120IaCaaTa9999AY.181
ORF7a120T120IaCaaTa9595B.1.177.810.017986
ORF7a120T120IaCaaTa8586B.1.10.001542
ORF7a120T120IaCaaTa8080B.1.177.860.014676
ORF7a120T120IaCaaTa5959P.10.000929
ORF7a120T120IaCaaTa5353AY.310.981481
ORF7a120T120IaCaaTa5252B.1.160.310.419355
ORF7a120T120IaCaaTa5252B.1.4290.001224
ORF7a120T120IaCaaTa4040B.1.6210.003541
ORF7a120T120IaCaaTa3737B.1.3510.0011
ORF7a120T120IaCaaTa3636B.1.177.110.061121
ORF7a120T120IaCaaTa3535B.1.2210.002486
ORF7a120T120IaCaaTa3434B.1.1.3770.046961
ORF7a120T120IaCaaTa3333B.1.1.2220.006732
ORF7a120T120IaCaaTa3333Q.80.005442
ORF7a120T120IaCaaTa3131B.1.1600.000967
ORF7a120T120IaCaaTa3131P.1.150.007203
ORF7a120T120IaCaaTa3030B0.003834
ORF7a120T120IaCaaTa2626B.1.2140.095238
ORF7a120T120IaCaaTa2626B.1.5960.002266
ORF7a120T120IaCaaTa2424B.1.617.10.003095
ORF7a120T120IaCaaTa2424C.370.002786
ORF7a120T120IaCaaTa2222B.1.177.600.004806
ORF7a120T120IaCaaTa2121B.1.1.5190.000834
ORF7a120T120IaCaaTa2020B.1.1.330.008418
ORF7a120T120IaCaaTa1919B.1.5250.00215
ORF7a120T120IaCaaTa1616B.1.1.580.086022
ORF7a120T120IaCaaTa1414B.1.177.820.006683
ORF7a120T120IaCaaTa1414B.1.258.170.001456
ORF7a120T120IaCaaTa1414B.1.5950.003653
ORF7a120T120IaCaaTa1313B.1.1.630.005015
ORF7a120T120IaCaaTa1313B.1.2580.000865
ORF7a120T120IaCaaTa1313P.1.120.006292
ORF7a120T120IaCaaTa1212B.1.360.001751
ORF7a120T120IaCaaTa1212P.1.170.001941
ORF7a120T120IaCaaTa1111B.1.5260.000259
ORF7a120T120IaCaaTa1010B.1.1.1410.020121
ORF7a120T120IaCaaTa1010B.1.2430.000696
ORF7a120T120IaCaaTa1010B.1.6280.003524
ORF7a120T120IaCaaTa99B.1.36.160.012821
ORF7a120T120IaCaaTa99B.1.4270.000454
ORF7a120T120IaCaaTa99D.20.000675
ORF7a120T120IaCaaTa99Q.10.001137
ORF7a120T120IaCaaTa88B.1.2340.001056
ORF7a120T120IaCaaTa88B.1.619.10.005131
ORF7a120T120IaCaaTa77AU.20.016949
ORF7a120T120IaCaaTa77B.1.1.4330.009972
ORF7a120T120IaCaaTa77B.1.258.210.054264
ORF7a120T120IaCaaTa77B.1.466.20.002739
ORF7a120T120IaCaaTa66B.1.1.3060.00263
ORF7a120T120IaCaaTa66B.1.177.40.001266
ORF7a120T120IaCaaTa66B.1.6090.002876
ORF7a120T120IaCaaTa66B.1.6370.000438
ORF7a120T120IaCaaTa350.166667
ORF7a120T120IaCaaTa55B.1.1.280.001556
ORF7a120T120IaCaaTa55B.1.177.690.007418
ORF7a120T120IaCaaTa55B.1.177.730.002831
ORF7a120T120IaCaaTa55B.1.5760.004533
ORF7a120T120IaCaaTa44A.2.50.001996
ORF7a120T120IaCaaTa44B.1.1.2070.004728
ORF7a120T120IaCaaTa44B.1.1.2840.00043
ORF7a120T120IaCaaTa44B.1.1.3110.001433
ORF7a120T120IaCaaTa44B.1.1110.0047
ORF7a120T120IaCaaTa44B.1.3750.003279
ORF7a120T120IaCaaTa44B.1.4990.004202
ORF7a120T120IaCaaTa44C.36.20.137931
ORF7a120T120IaCaaTa44P.1.10.001271
ORF7a120T120IaCaaTa44P.1.140.000191
ORF7a120T120IaCaaTa33A0.001161
ORF7a120T120IaCaaTa33B.1.1.1700.003741
ORF7a120T120IaCaaTa33B.1.1.3180.000905
ORF7a120T120IaCaaTa33B.1.1.4320.003797
ORF7a120T120IaCaaTa33B.1.110.30.002155
ORF7a120T120IaCaaTa33B.1.1570.008955
ORF7a120T120IaCaaTa33B.1.177.70.000495
ORF7a120T120IaCaaTa33B.1.2010.017045
ORF7a120T120IaCaaTa33B.1.3110.000824
ORF7a120T120IaCaaTa33B.1.4370.0625
ORF7a120T120IaCaaTa33B.1.4850.044776
ORF7a120T120IaCaaTa33B.1.5090.002597
ORF7a120T120IaCaaTa33B.1.6230.001609
ORF7a120T120IaCaaTa33C.36.30.001702
ORF7a120T120IaCaaTa33P.1.100.000808
ORF7a120T120IaCaaTa33P.1.160.001122
ORF7a120T120IaCaaTa33P.1.70.000958
ORF7a120T120IaCaaTa33P.20.00056
ORF7a120T120IaCaaTa33Q.40.001364
ORF7a120T120IaCaaTa33R.10.00027
ORF7a120T120IaCaaTa33W.40.004054
ORF7a120T120IaCaaTa22AU.30.004219
ORF7a120T120IaCaaTa22AZ.20.001642
ORF7a120T120IaCaaTa22B.1.1.2740.010101
ORF7a120T120IaCaaTa22B.1.1.2940.002532
ORF7a120T120IaCaaTa22B.1.1.3170.000823
ORF7a120T120IaCaaTa22B.1.1.3290.007692
ORF7a120T120IaCaaTa22B.1.1.3720.001377
ORF7a120T120IaCaaTa22B.1.1.5240.041667
ORF7a120T120IaCaaTa22B.1.1.700.000682
ORF7a120T120IaCaaTa22B.1.160.320.008584
ORF7a120T120IaCaaTa22B.1.2470.029851
ORF7a120T120IaCaaTa22B.1.258.140.001961
ORF7a120T120IaCaaTa22B.1.2840.026316
ORF7a120T120IaCaaTa22B.1.3490.00143
ORF7a120T120IaCaaTa22B.1.3690.00057
ORF7a120T120IaCaaTa22B.1.4000.000858
ORF7a120T120IaCaaTa22B.1.4090.001563
ORF7a120T120IaCaaTa22B.1.416.10.003125
ORF7a120T120IaCaaTa22B.1.438.10.000215
ORF7a120T120IaCaaTa22B.1.5800.00813
ORF7a120T120IaCaaTa22B.1.5970.009259
ORF7a120T120IaCaaTa22B.1.6040.034483
ORF7a120T120IaCaaTa22B.1.6190.001742
ORF7a120T120IaCaaTa22B.1.621.10.001012
ORF7a120T120IaCaaTa22C.36.3.10.005435
ORF7a120T120IaCaaTa22P.1.130.001797
ORF7a120T120IaCaaTa22Q.70.002222
ORF7a120T120IaCaaTa11A.20.000662
ORF7a120T120IaCaaTa11A.2.30.004739
ORF7a120T120IaCaaTa11A.2.5.10.004808
ORF7a120T120IaCaaTa11A.23.10.000704
ORF7a120T120IaCaaTa11A.270.001656
ORF7a120T120IaCaaTa11AD.20.000219
ORF7a120T120IaCaaTa11B.1.1.1210.002427
ORF7a120T120IaCaaTa11B.1.1.1290.009174
ORF7a120T120IaCaaTa11B.1.1.1480.008772
ORF7a120T120IaCaaTa11B.1.1.1760.000439
ORF7a120T120IaCaaTa11B.1.1.2140.000055
ORF7a120T120IaCaaTa11B.1.1.2200.001859
ORF7a120T120IaCaaTa11B.1.1.250.000569
ORF7a120T120IaCaaTa11B.1.1.2800.003086
ORF7a120T120IaCaaTa11B.1.1.2970.002237
ORF7a120T120IaCaaTa11B.1.1.2980.000862
ORF7a120T120IaCaaTa11B.1.1.3160.000925
ORF7a120T120IaCaaTa11B.1.1.3480.000796
ORF7a120T120IaCaaTa11B.1.1.370.000193
ORF7a120T120IaCaaTa11B.1.1.4120.007634
ORF7a120T120IaCaaTa11B.1.1.4130.006897
ORF7a120T120IaCaaTa11B.1.1.4830.038462
ORF7a120T120IaCaaTa11B.1.1.5070.008696
ORF7a120T120IaCaaTa11B.1.1.5120.028571
ORF7a120T120IaCaaTa11B.1.1.5230.001563
ORF7a120T120IaCaaTa11B.1.1.5260.003546
ORF7a120T120IaCaaTa11B.1.1.570.011494
ORF7a120T120IaCaaTa11B.1.1.670.004566
ORF7a120T120IaCaaTa11B.1.1310.008772
ORF7a120T120IaCaaTa11B.1.1420.002899
ORF7a120T120IaCaaTa11B.1.160.200.008929
ORF7a120T120IaCaaTa11B.1.160.300.002976
ORF7a120T120IaCaaTa11B.1.177.750.001041
ORF7a120T120IaCaaTa11B.1.2060.000816
ORF7a120T120IaCaaTa11B.1.214.20.0006
ORF7a120T120IaCaaTa11B.1.2190.009434
ORF7a120T120IaCaaTa11B.1.2400.000216
ORF7a120T120IaCaaTa11B.1.2410.000812
ORF7a120T120IaCaaTa11B.1.258.70.001912
ORF7a120T120IaCaaTa11B.1.3010.005917
ORF7a120T120IaCaaTa11B.1.3240.001605
ORF7a120T120IaCaaTa11B.1.351.20.000303
ORF7a120T120IaCaaTa11B.1.351.50.0006
ORF7a120T120IaCaaTa11B.1.36.180.00042
ORF7a120T120IaCaaTa11B.1.36.290.000517
ORF7a120T120IaCaaTa11B.1.36.80.001
ORF7a120T120IaCaaTa11B.1.3610.001289
ORF7a120T120IaCaaTa11B.1.3620.001541
ORF7a120T120IaCaaTa11B.1.3660.004878
ORF7a120T120IaCaaTa11B.1.3700.008
ORF7a120T120IaCaaTa11B.1.3800.006623
ORF7a120T120IaCaaTa11B.1.3810.007812
ORF7a120T120IaCaaTa11B.1.4050.012346
ORF7a120T120IaCaaTa11B.1.4260.001009
ORF7a120T120IaCaaTa11B.1.4320.011236
ORF7a120T120IaCaaTa11B.1.4330.003195
ORF7a120T120IaCaaTa11B.1.4520.013699
ORF7a120T120IaCaaTa11B.1.4620.007246
ORF7a120T120IaCaaTa11B.1.4700.001404
ORF7a120T120IaCaaTa11B.1.4740.001901
ORF7a120T120IaCaaTa11B.1.4970.000315
ORF7a120T120IaCaaTa11B.1.5080.025641
ORF7a120T120IaCaaTa11B.1.5170.000427
ORF7a120T120IaCaaTa11B.1.5230.002451
ORF7a120T120IaCaaTa11B.1.5240.001406
ORF7a120T120IaCaaTa11B.1.5330.009615
ORF7a120T120IaCaaTa11B.1.5510.00129
ORF7a120T120IaCaaTa11B.1.5610.000397
ORF7a120T120IaCaaTa11B.1.5640.000426
ORF7a120T120IaCaaTa11B.1.5740.002151
ORF7a120T120IaCaaTa11B.1.5770.000687
ORF7a120T120IaCaaTa11B.1.5820.000491
ORF7a120T120IaCaaTa11B.1.5940.03125
ORF7a120T120IaCaaTa11B.1.6270.00202
ORF7a120T120IaCaaTa11B.1.9.40.006135
ORF7a120T120IaCaaTa11B.120.00641
ORF7a120T120IaCaaTa11B.550.00295
ORF7a120T120IaCaaTa11B.6.60.000889
ORF7a120T120IaCaaTa11C.1.20.004255
ORF7a120T120IaCaaTa11C.160.00106
ORF7a120T120IaCaaTa11N.10.016949
ORF7a120T120IaCaaTa11N.50.001767
ORF7a120T120IaCaaTa11P.1.20.001156
ORF7a120T120IaCaaTa11P.1.80.004785
ORF7a120T120IaCaaTa11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.