CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 120 & Codon = ---

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a120T120deldelACA---24432443127751-27753

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a120T120delACA---24432443All0.000467
ORF7a120T120delACA---11511151B.1.1.70.00103
ORF7a120T120delACA---265265AY.40.000412
ORF7a120T120delACA---9393AY.330.00621
ORF7a120T120delACA---7474AY.250.000445
ORF7a120T120delACA---6969AY.460.007182
ORF7a120T120delACA---4747P.10.00074
ORF7a120T120delACA---4040B.1.20.000352
ORF7a120T120delACA---3737B.1.617.20.000139
ORF7a120T120delACA---3535AY.1030.000217
ORF7a120T120delACA---3333AY.740.003816
ORF7a120T120delACA---3232AY.420.001287
ORF7a120T120delACA---2929AY.430.000128
ORF7a120T120delACA---2828AY.30.000278
ORF7a120T120delACA---2727AY.290.000426
ORF7a120T120delACA---2222AY.260.000623
ORF7a120T120delACA---2121AY.530.006038
ORF7a120T120delACA---1818B.1.10.000327
ORF7a120T120delACA---1818C.370.002089
ORF7a120T120delACA---1717AY.390.00042
ORF7a120T120delACA---1616AY.440.000097
ORF7a120T120delACA---1515B.1.4270.000757
ORF7a120T120delACA---1414B.1.1.370.0027
ORF7a120T120delACA---1313B.10.000119
ORF7a120T120delACA---1212B.1.1770.000158
ORF7a120T120delACA---1111Q.80.001814
ORF7a120T120delACA---1010AY.1200.000372
ORF7a120T120delACA---1010B.1.2340.001319
ORF7a120T120delACA---1010B.1.4290.000235
ORF7a120T120delACA---99AY.1130.001282
ORF7a120T120delACA---99AY.60.00037
ORF7a120T120delACA---99B.1.1.2140.000499
ORF7a120T120delACA---99B.1.1.5190.000357
ORF7a120T120delACA---88AY.1020.000212
ORF7a120T120delACA---88AY.910.005844
ORF7a120T120delACA---77AY.50.000145
ORF7a120T120delACA---77B.1.258.170.000728
ORF7a120T120delACA---66B.1.5260.000141
ORF7a120T120delACA---55AY.4.20.000108
ORF7a120T120delACA---55B.1.1.3180.001509
ORF7a120T120delACA---55B.1.3510.000149
ORF7a120T120delACA---55P.1.140.000239
ORF7a120T120delACA---55P.20.000933
ORF7a120T120delACA---44AY.1140.000924
ORF7a120T120delACA---44AY.790.004843
ORF7a120T120delACA---44B.1.1.2840.00043
ORF7a120T120delACA---44B.1.177.210.000306
ORF7a120T120delACA---44B.1.177.70.000659
ORF7a120T120delACA---44B.1.351.20.00121
ORF7a120T120delACA---44B.1.6210.000354
ORF7a120T120delACA---33AY.200.000117
ORF7a120T120delACA---33AY.270.000194
ORF7a120T120delACA---33B.1.1.4340.001046
ORF7a120T120delACA---33B.1.1.580.016129
ORF7a120T120delACA---33B.1.2580.0002
ORF7a120T120delACA---33B.1.360.000438
ORF7a120T120delACA---33B.1.5250.000339
ORF7a120T120delACA---33B.1.5960.000261
ORF7a120T120delACA---33B.1.621.10.001517
ORF7a120T120delACA---33B.1.6260.017143
ORF7a120T120delACA---33B.1.6280.001057
ORF7a120T120delACA---33B.1.6370.000219
ORF7a120T120delACA---33P.1.150.000697
ORF7a120T120delACA---33Q.10.000379
ORF7a120T120delACA---22AY.1000.000092
ORF7a120T120delACA---22AY.1080.002205
ORF7a120T120delACA---22AY.1160.000574
ORF7a120T120delACA---22AY.1170.000169
ORF7a120T120delACA---22AY.1180.000125
ORF7a120T120delACA---22AY.1190.000071
ORF7a120T120delACA---22AY.1210.000271
ORF7a120T120delACA---22AY.46.50.000397
ORF7a120T120delACA---22AY.470.000062
ORF7a120T120delACA---22AY.590.001059
ORF7a120T120delACA---22AY.940.000885
ORF7a120T120delACA---22B.1.1.10.000653
ORF7a120T120delACA---22B.1.1.2800.006173
ORF7a120T120delACA---22B.1.1.330.000842
ORF7a120T120delACA---22B.1.1600.000062
ORF7a120T120delACA---22B.1.177.500.00939
ORF7a120T120delACA---22B.1.177.600.000437
ORF7a120T120delACA---22B.1.177.860.000367
ORF7a120T120delACA---22B.1.2210.000142
ORF7a120T120delACA---22B.1.2430.000139
ORF7a120T120delACA---22B.1.466.20.000782
ORF7a120T120delACA---22B.1.6120.005305
ORF7a120T120delACA---11A0.000387
ORF7a120T120delACA---11A.10.000282
ORF7a120T120delACA---11A.2.20.001689
ORF7a120T120delACA---11A.230.010526
ORF7a120T120delACA---11AE.80.000489
ORF7a120T120delACA---11AH.30.003802
ORF7a120T120delACA---11AU.10.001266
ORF7a120T120delACA---11AY.120.10.000321
ORF7a120T120delACA---11AY.120.2.10.000498
ORF7a120T120delACA---11AY.230.00007
ORF7a120T120delACA---11AY.240.000431
ORF7a120T120delACA---11AY.340.000097
ORF7a120T120delACA---11AY.370.000316
ORF7a120T120delACA---11AY.4.50.000107
ORF7a120T120delACA---11AY.5.30.000337
ORF7a120T120delACA---11AY.5.40.000277
ORF7a120T120delACA---11AY.600.000938
ORF7a120T120delACA---11AY.750.000056
ORF7a120T120delACA---11AY.870.000833
ORF7a120T120delACA---11AY.880.000884
ORF7a120T120delACA---11AY.90.000068
ORF7a120T120delACA---11AY.9.10.000084
ORF7a120T120delACA---11AY.98.10.000048
ORF7a120T120delACA---11AZ.20.000821
ORF7a120T120delACA---11AZ.30.00152
ORF7a120T120delACA---11B0.000128
ORF7a120T120delACA---11B.1.1.1650.015385
ORF7a120T120delACA---11B.1.1.2220.000204
ORF7a120T120delACA---11B.1.1.2310.003096
ORF7a120T120delACA---11B.1.1.2650.003155
ORF7a120T120delACA---11B.1.1.3970.002252
ORF7a120T120delACA---11B.1.1.700.000341
ORF7a120T120delACA---11B.1.110.30.000718
ORF7a120T120delACA---11B.1.177.420.000894
ORF7a120T120delACA---11B.1.177.440.000519
ORF7a120T120delACA---11B.1.177.570.000281
ORF7a120T120delACA---11B.1.177.770.000726
ORF7a120T120delACA---11B.1.177.870.000728
ORF7a120T120delACA---11B.1.214.20.0006
ORF7a120T120delACA---11B.1.2350.002519
ORF7a120T120delACA---11B.1.258.110.000396
ORF7a120T120delACA---11B.1.2650.001271
ORF7a120T120delACA---11B.1.351.30.000876
ORF7a120T120delACA---11B.1.36.160.001425
ORF7a120T120delACA---11B.1.36.310.001751
ORF7a120T120delACA---11B.1.3620.001541
ORF7a120T120delACA---11B.1.3690.000285
ORF7a120T120delACA---11B.1.3750.00082
ORF7a120T120delACA---11B.1.4130.004255
ORF7a120T120delACA---11B.1.4590.004082
ORF7a120T120delACA---11B.1.4680.005714
ORF7a120T120delACA---11B.1.5170.000427
ORF7a120T120delACA---11B.1.5270.003704
ORF7a120T120delACA---11B.1.6300.005236
ORF7a120T120delACA---11B.120.00641
ORF7a120T120delACA---11C.300.001727
ORF7a120T120delACA---11C.37.10.002618
ORF7a120T120delACA---11D.20.000075
ORF7a120T120delACA---11N.50.001767
ORF7a120T120delACA---11P.1.10.000318
ORF7a120T120delACA---11P.1.120.000484
ORF7a120T120delACA---11P.1.160.000374
ORF7a120T120delACA---11P.1.170.000162
ORF7a120T120delACA---11P.1.70.000319
ORF7a120T120delACA---11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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