CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 120

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF7a	120	T120I		nonsyn	aCa	aTa	2638714	2638678	0.999986	27751-27753
ORF7a	120	T120I		nonsyn	aCA	aTT	2638714	33	0.0000125061	27751-27753
ORF7a	120	T120I		nonsyn	aCA	aTC	2638714	3	0.00000113692	27751-27753
ORF7a	120	T120del		del	ACA	---	2443	2443	1	27751-27753
ORF7a	120	T120V		nonsyn	ACa	GTa	547	546	0.998172	27751-27753
ORF7a	120	T120V		nonsyn	ACA	GTT	547	1	0.00182815	27751-27753
ORF7a	120	T120M		nonsyn	aCA	aTG	311	311	1	27751-27753
ORF7a	120	T120T		syn	acA	acG	207	110	0.531401	27751-27753
ORF7a	120	T120T		syn	acA	acT	207	62	0.299517	27751-27753
ORF7a	120	T120T		syn	acA	acC	207	35	0.169082	27751-27753
ORF7a	120	T120L		nonsyn	ACa	CTa	53	29	0.54717	27751-27753
ORF7a	120	T120L		nonsyn	ACa	TTa	53	22	0.415094	27751-27753
ORF7a	120	T120L		nonsyn	ACA	CTT	53	2	0.0377358	27751-27753
ORF7a	120	T120S		nonsyn	Aca	Tca	48	46	0.958333	27751-27753
ORF7a	120	T120S		nonsyn	aCA	aGC	48	2	0.0416667	27751-27753
ORF7a	120	T120del2		del	ACa	--a	46	35	0.76087	27751-27753
ORF7a	120	T120del2		del	aCA	a--	46	11	0.23913	27751-27753
ORF7a	120	T120R		nonsyn	aCa	aGa	45	44	0.977778	27751-27753
ORF7a	120	T120R		nonsyn	ACa	CGa	45	1	0.0222222	27751-27753
ORF7a	120	T120P		nonsyn	Aca	Cca	42	39	0.928571	27751-27753
ORF7a	120	T120P		nonsyn	AcA	CcT	42	2	0.047619	27751-27753
ORF7a	120	T120P		nonsyn	AcA	CcG	42	1	0.0238095	27751-27753
ORF7a	120	T120A		nonsyn	Aca	Gca	34	33	0.970588	27751-27753
ORF7a	120	T120A		nonsyn	AcA	GcG	34	1	0.0294118	27751-27753
ORF7a	120	T120K		nonsyn	aCa	aAa	33	31	0.939394	27751-27753
ORF7a	120	T120K		nonsyn	aCA	aAG	33	2	0.0606061	27751-27753
ORF7a	120	T120del1		del	aCa	a-a	30	12	0.4	27751-27753
ORF7a	120	T120del1		del	Aca	-ca	30	10	0.333333	27751-27753
ORF7a	120	T120del1		del	acA	ac-	30	5	0.166667	27751-27753
ORF7a	120	T120del1		del	ACa	-Na	30	2	0.0666667	27751-27753
ORF7a	120	T120del1		del	ACA	-NN	30	1	0.0333333	27751-27753
ORF7a	120	T120F		nonsyn	ACA	TTC	7	7	1	27751-27753
ORF7a	120	T120X		nonsyn	ACa	TAa	2	1	0.5	27751-27753
ORF7a	120	T120X		nonsyn	ACa	TGa	2	1	0.5	27751-27753
ORF7a	120	T120Q		nonsyn	ACa	CAa	1	1	1	27751-27753
ORF7a	120	T120N		nonsyn	aCA	aAC	1	1	1	27751-27753
ORF7a	120	T120E		nonsyn	ACa	GAa	1	1	1	27751-27753
ORF7a	120	T120Y		nonsyn	ACA	TAT	1	1	1	27751-27753

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF7a	120	T120I	aCa	aTa	2638678	2638714	All	0.504678
ORF7a	120	T120I	aCA	aTT	33	2638714	All	0.000006
ORF7a	120	T120I	aCA	aTC	3	2638714	All	0.000001
ORF7a	120	T120I	aCa	aTa	627664	627668	AY.4	0.97691
ORF7a	120	T120I	aCA	aTT	4	627668	AY.4	0.000006
ORF7a	120	T120I	aCa	aTa	256420	256424	B.1.617.2	0.965528
ORF7a	120	T120I	aCA	aTC	2	256424	B.1.617.2	0.000008
ORF7a	120	T120I	aCA	aTT	2	256424	B.1.617.2	0.000008
ORF7a	120	T120I	aCa	aTa	217667	217667	AY.43	0.964366
ORF7a	120	T120I	aCa	aTa	158771	158771	AY.25	0.954979
ORF7a	120	T120I	aCa	aTa	153048	153048	AY.103	0.950284
ORF7a	120	T120I	aCa	aTa	152515	152521	AY.44	0.928322
ORF7a	120	T120I	aCA	aTT	5	152521	AY.44	0.00003
ORF7a	120	T120I	aCA	aTC	1	152521	AY.44	0.000006
ORF7a	120	T120I	aCa	aTa	95541	95541	AY.3	0.950288
ORF7a	120	T120I	aCa	aTa	63321	63321	AY.29	0.998801
ORF7a	120	T120I	aCa	aTa	45816	45816	AY.5	0.946064
ORF7a	120	T120I	aCa	aTa	45787	45787	AY.4.2	0.99306
ORF7a	120	T120I	aCa	aTa	37231	37231	AY.102	0.987141
ORF7a	120	T120I	aCa	aTa	33685	33686	AY.26	0.953628
ORF7a	120	T120I	aCA	aTT	1	33686	AY.26	0.000028
ORF7a	120	T120I	aCa	aTa	30649	30649	AY.47	0.953342
ORF7a	120	T120I	aCa	aTa	29048	29051	AY.39	0.717819
ORF7a	120	T120I	aCA	aTT	3	29051	AY.39	0.000074
ORF7a	120	T120I	aCa	aTa	26809	26809	AY.119	0.946579
ORF7a	120	T120I	aCa	aTa	26137	26137	AY.9.2	0.960001
ORF7a	120	T120I	aCa	aTa	26030	26030	AY.120	0.967766
ORF7a	120	T120I	aCa	aTa	24683	24683	AY.39.1	0.977777
ORF7a	120	T120I	aCa	aTa	24510	24510	AY.20	0.952585
ORF7a	120	T120I	aCa	aTa	23631	23631	AY.6	0.971909
ORF7a	120	T120I	aCa	aTa	23372	23372	AY.42	0.940258
ORF7a	120	T120I	aCa	aTa	19852	19852	AY.98.1	0.961449
ORF7a	120	T120I	aCa	aTa	19534	19534	AY.100	0.898693
ORF7a	120	T120I	aCa	aTa	16470	16470	AY.75	0.922689
ORF7a	120	T120I	aCa	aTa	15241	15241	AY.118	0.95483
ORF7a	120	T120I	aCa	aTa	14557	14557	AY.27	0.94214
ORF7a	120	T120I	aCa	aTa	14196	14196	AY.9	0.959578
ORF7a	120	T120I	aCa	aTa	13954	13954	AY.33	0.93182
ORF7a	120	T120I	aCa	aTa	13243	13243	AY.46.6	0.956242
ORF7a	120	T120I	aCa	aTa	12796	12796	AY.23	0.892516
ORF7a	120	T120I	aCa	aTa	11973	11973	AY.98	0.945809
ORF7a	120	T120I	aCa	aTa	11670	11670	AY.9.1	0.97706
ORF7a	120	T120I	aCa	aTa	11187	11187	AY.3.1	0.95379
ORF7a	120	T120I	aCa	aTa	11114	11114	AY.117	0.939317
ORF7a	120	T120I	aCa	aTa	10896	10896	AY.14	0.958986
ORF7a	120	T120I	aCa	aTa	10385	10385	AY.99.2	0.957055
ORF7a	120	T120I	aCa	aTa	9997	9997	AY.34	0.969359
ORF7a	120	T120I	aCa	aTa	9823	9823	AY.54	0.936594
ORF7a	120	T120I	aCa	aTa	9424	9424	AY.61	0.987427
ORF7a	120	T120I	aCa	aTa	8943	8943	AY.46	0.930787
ORF7a	120	T120I	aCa	aTa	8714	8714	AY.4.5	0.936687
ORF7a	120	T120I	aCa	aTa	8697	8710	AY.110	0.980054
ORF7a	120	T120I	aCA	aTT	13	8710	AY.110	0.001465
ORF7a	120	T120I	aCa	aTa	8480	8480	AY.74	0.980687
ORF7a	120	T120I	aCa	aTa	8298	8298	AY.7.1	0.935197
ORF7a	120	T120I	aCa	aTa	7550	7550	AY.45	0.918715
ORF7a	120	T120I	aCa	aTa	6889	6889	AY.121	0.932206
ORF7a	120	T120I	aCa	aTa	6653	6653	AY.113	0.947316
ORF7a	120	T120I	aCa	aTa	6533	6533	AY.4.2.1	0.973331
ORF7a	120	T120I	aCa	aTa	6388	6388	AY.36	0.946791
ORF7a	120	T120I	aCa	aTa	5921	5921	AY.13	0.953155
ORF7a	120	T120I	aCa	aTa	5898	5898	AY.46.4	0.970225
ORF7a	120	T120I	aCa	aTa	5344	5344	AY.69	0.997573
ORF7a	120	T120I	aCa	aTa	5259	5259	AY.111	0.963187
ORF7a	120	T120I	aCa	aTa	4922	4922	AY.46.5	0.976587
ORF7a	120	T120I	aCa	aTa	4881	4881	AY.7	0.956684
ORF7a	120	T120I	aCa	aTa	4678	4678	AY.70	0.975396
ORF7a	120	T120I	aCa	aTa	4605	4605	AY.75.1	0.830328
ORF7a	120	T120I	aCa	aTa	4508	4508	AY.29.1	0.994046
ORF7a	120	T120I	aCa	aTa	4230	4230	AY.35	0.985784
ORF7a	120	T120I	aCa	aTa	4065	4065	AY.114	0.93945
ORF7a	120	T120I	aCa	aTa	3604	3604	AY.93	0.984162
ORF7a	120	T120I	aCa	aTa	3423	3423	AY.5.4	0.94715
ORF7a	120	T120I	aCa	aTa	3327	3327	AY.116	0.954115
ORF7a	120	T120I	aCa	aTa	3313	3313	AY.41	0.973839
ORF7a	120	T120I	aCa	aTa	3264	3264	AY.53	0.93847
ORF7a	120	T120I	aCa	aTa	3186	3186	AY.68	0.87216
ORF7a	120	T120I	aCa	aTa	3049	3049	AY.92	0.875898
ORF7a	120	T120I	aCa	aTa	3003	3003	AY.116.1	0.935223
ORF7a	120	T120I	aCa	aTa	3001	3001	AY.37	0.948483
ORF7a	120	T120I	aCa	aTa	2910	2910	AY.120.1	0.934189
ORF7a	120	T120I	aCa	aTa	2839	2839	AY.106	0.95077
ORF7a	120	T120I	aCa	aTa	2829	2829	AY.5.3	0.954453
ORF7a	120	T120I	aCa	aTa	2666	2666	AY.2	0.94943
ORF7a	120	T120I	aCa	aTa	2575	2575	AY.12	0.813843
ORF7a	120	T120I	aCa	aTa	2537	2537	AY.63	0.981431
ORF7a	120	T120del	ACA	---	2443	2443	All	0.000467
ORF7a	120	T120I	aCa	aTa	2440	2440	AY.1	0.965572
ORF7a	120	T120I	aCa	aTa	2419	2419	AY.30	0.957262
ORF7a	120	T120I	aCa	aTa	2401	2401	AY.16	0.911541
ORF7a	120	T120I	aCa	aTa	2394	2394	AY.23.1	0.999165
ORF7a	120	T120I	aCa	aTa	2369	2369	AY.4.4	0.969313
ORF7a	120	T120I	aCa	aTa	2210	2210	AY.24	0.952586
ORF7a	120	T120I	aCa	aTa	2209	2209	AY.62	0.962527
ORF7a	120	T120I	aCa	aTa	2185	2185	AY.94	0.967242
ORF7a	120	T120I	aCa	aTa	2162	2162	AY.85	0.923537
ORF7a	120	T120I	aCa	aTa	2016	2016	AY.84	0.88189
ORF7a	120	T120I	aCa	aTa	1997	1997	AY.67	0.927112
ORF7a	120	T120I	aCa	aTa	1982	1982	AY.107	0.923579
ORF7a	120	T120I	aCa	aTa	1956	1956	AY.71	0.929216
ORF7a	120	T120I	aCa	aTa	1928	1928	AY.120.2.1	0.960638
ORF7a	120	T120I	aCa	aTa	1923	1923	AY.34.1	0.980622
ORF7a	120	T120I	aCa	aTa	1919	1919	AY.101	0.941148
ORF7a	120	T120I	aCa	aTa	1887	1887	AY.38	0.942087
ORF7a	120	T120I	aCa	aTa	1876	1877	B.1.1.7	0.001679
ORF7a	120	T120I	aCA	aTT	1	1877	B.1.1.7	0.000001
ORF7a	120	T120I	aCa	aTa	1845	1845	AY.48	0.85814
ORF7a	120	T120I	aCa	aTa	1795	1795	AY.10	0.951245
ORF7a	120	T120I	aCa	aTa	1764	1764	AY.59	0.934322
ORF7a	120	T120I	aCa	aTa	1739	1740	AY.32	0.925985
ORF7a	120	T120I	aCA	aTT	1	1740	AY.32	0.000532
ORF7a	120	T120I	aCa	aTa	1689	1689	AY.7.2	0.944631
ORF7a	120	T120I	aCa	aTa	1627	1627	AY.8	0.986061
ORF7a	120	T120I	aCa	aTa	1572	1572	AY.64	0.935714
ORF7a	120	T120I	aCa	aTa	1539	1539	AY.46.2	0.977764
ORF7a	120	T120I	aCa	aTa	1510	1510	AY.57	0.990814
ORF7a	120	T120I	aCa	aTa	1482	1482	AY.73	0.986028
ORF7a	120	T120I	aCa	aTa	1474	1474	AY.105	0.94791
ORF7a	120	T120I	aCa	aTa	1454	1454	AY.65	0.775053
ORF7a	120	T120I	aCa	aTa	1430	1430	AY.90	0.978782
ORF7a	120	T120I	aCa	aTa	1420	1420	B.1.2	0.012504
ORF7a	120	T120I	aCa	aTa	1345	1345	AY.4.1	0.991888
ORF7a	120	T120I	aCa	aTa	1310	1310	AY.39.1.1	0.949275
ORF7a	120	T120I	aCa	aTa	1285	1285	Q.2	0.788344
ORF7a	120	T120I	aCa	aTa	1282	1282	AY.91	0.93645
ORF7a	120	T120I	aCa	aTa	1254	1254	AY.109	0.927515
ORF7a	120	T120I	aCa	aTa	1229	1229	AY.50	0.982414
ORF7a	120	T120I	aCa	aTa	1177	1177	AY.86	0.976763
ORF7a	120	T120I	aCa	aTa	1153	1153	AY.4.3	0.970539
ORF7a	120	T120del	ACA	---	1151	1151	B.1.1.7	0.00103
ORF7a	120	T120I	aCa	aTa	1132	1132	AY.87	0.942548
ORF7a	120	T120I	aCa	aTa	1118	1118	AY.95	0.850837
ORF7a	120	T120I	aCa	aTa	1052	1052	AY.51	0.956364
ORF7a	120	T120I	aCa	aTa	1036	1036	AY.46.3	0.96732
ORF7a	120	T120I	aCa	aTa	1022	1022	AY.60	0.958724
ORF7a	120	T120I	aCa	aTa	1008	1008	AY.58	0.914701
ORF7a	120	T120I	aCa	aTa	955	955	AY.55	0.876147
ORF7a	120	T120I	aCa	aTa	933	933	AY.88	0.824934
ORF7a	120	T120I	aCa	aTa	891	891	AY.46.1	0.914784
ORF7a	120	T120I	aCa	aTa	878	878	AY.108	0.968026
ORF7a	120	T120I	aCa	aTa	847	847	AY.52	0.689739
ORF7a	120	T120I	aCa	aTa	846	846	AY.80	0.954853
ORF7a	120	T120I	aCa	aTa	844	844	AY.99	0.885624
ORF7a	120	T120I	aCa	aTa	838	838	AY.40	0.8081
ORF7a	120	T120I	aCa	aTa	823	823	AY.77	0.927847
ORF7a	120	T120I	aCa	aTa	809	809	AY.66	0.865241
ORF7a	120	T120I	aCa	aTa	807	807	AY.79	0.976998
ORF7a	120	T120I	aCa	aTa	759	759	B.1.177.18	0.88051
ORF7a	120	T120I	aCa	aTa	755	755	AY.19	0.860889
ORF7a	120	T120I	aCa	aTa	731	731	AY.11	0.978581
ORF7a	120	T120I	aCa	aTa	721	721	B.1	0.006604
ORF7a	120	T120I	aCa	aTa	719	719	AY.72	0.978231
ORF7a	120	T120I	aCa	aTa	710	710	AY.120.2	0.912596
ORF7a	120	T120I	aCa	aTa	656	656	AY.82	0.890095
ORF7a	120	T120I	aCa	aTa	643	643	AY.39.2	0.990755
ORF7a	120	T120I	aCa	aTa	630	630	AY.99.1	0.978261
ORF7a	120	T120I	aCa	aTa	628	628	AY.78	0.967643
ORF7a	120	T120I	aCa	aTa	624	624	AY.16.1	0.293233
ORF7a	120	T120I	aCa	aTa	580	580	AY.56	0.930979
ORF7a	120	T120I	aCa	aTa	562	562	AY.97	0.955782
ORF7a	120	T120V	ACa	GTa	546	547	All	0.000104
ORF7a	120	T120V	ACA	GTT	1	547	All	0
ORF7a	120	T120I	aCa	aTa	525	525	AY.28	0.992439
ORF7a	120	T120I	aCa	aTa	505	505	AY.9.2.1	0.998024
ORF7a	120	T120I	aCa	aTa	503	503	AY.21	0.954459
ORF7a	120	T120I	aCa	aTa	466	466	AY.83	0.803448
ORF7a	120	T120I	aCa	aTa	465	465	AY.22	0.972803
ORF7a	120	T120I	aCa	aTa	464	464	AY.81	0.924303
ORF7a	120	T120I	aCa	aTa	445	445	AY.15	0.988889
ORF7a	120	T120I	aCa	aTa	434	434	AY.104	0.861111
ORF7a	120	T120V	ACa	GTa	412	412	AY.39	0.010181
ORF7a	120	T120I	aCa	aTa	389	389	AY.5.2	0.958128
ORF7a	120	T120I	aCa	aTa	338	338	B.1.177	0.004451
ORF7a	120	T120M	aCA	aTG	311	311	All	0.000059
ORF7a	120	T120I	aCa	aTa	297	297	AY.96	0.616183
ORF7a	120	T120del	ACA	---	265	265	AY.4	0.000412
ORF7a	120	T120I	aCa	aTa	254	254	AY.5.1	0.954887
ORF7a	120	T120I	aCa	aTa	249	249	AY.49	0.795527
ORF7a	120	T120I	aCa	aTa	238	238	AY.91.1	0.96748
ORF7a	120	T120T	acA	acG	110	207	All	0.000021
ORF7a	120	T120T	acA	acT	62	207	All	0.000012
ORF7a	120	T120T	acA	acC	35	207	All	0.000007
ORF7a	120	T120I	aCa	aTa	203	203	AY.76	0.980676
ORF7a	120	T120I	aCa	aTa	195	195	AY.89	0.955882
ORF7a	120	T120I	aCa	aTa	134	134	AY.115	0.697917
ORF7a	120	T120M	aCA	aTG	131	131	B.1.617.2	0.000493
ORF7a	120	T120I	aCa	aTa	112	112	AY.17	0.918033
ORF7a	120	T120M	aCA	aTG	102	102	AY.102	0.002704
ORF7a	120	T120T	acA	acG	76	102	B.1.1.7	0.000068
ORF7a	120	T120T	acA	acT	23	102	B.1.1.7	0.000021
ORF7a	120	T120T	acA	acC	3	102	B.1.1.7	0.000003
ORF7a	120	T120I	aCa	aTa	99	99	AY.18	1
ORF7a	120	T120I	aCa	aTa	95	95	B.1.177.81	0.017986
ORF7a	120	T120del	ACA	---	93	93	AY.33	0.00621
ORF7a	120	T120I	aCa	aTa	85	86	B.1.1	0.001542
ORF7a	120	T120I	aCA	aTT	1	86	B.1.1	0.000018
ORF7a	120	T120I	aCa	aTa	80	80	B.1.177.86	0.014676
ORF7a	120	T120del	ACA	---	74	74	AY.25	0.000445
ORF7a	120	T120del	ACA	---	69	69	AY.46	0.007182
ORF7a	120	T120I	aCa	aTa	59	59	P.1	0.000929
ORF7a	120	T120L	ACa	CTa	29	53	All	0.000006
ORF7a	120	T120L	ACa	TTa	22	53	All	0.000004
ORF7a	120	T120L	ACA	CTT	2	53	All	0
ORF7a	120	T120I	aCa	aTa	53	53	AY.31	0.981481
ORF7a	120	T120I	aCa	aTa	52	52	B.1.160.31	0.419355
ORF7a	120	T120I	aCa	aTa	52	52	B.1.429	0.001224
ORF7a	120	T120S	Aca	Tca	46	48	All	0.000009
ORF7a	120	T120S	aCA	aGC	2	48	All	0
ORF7a	120	T120del	ACA	---	47	47	P.1	0.00074
ORF7a	120	T120del2	ACa	--a	35	46	All	0.000007
ORF7a	120	T120del2	aCA	a--	11	46	All	0.000002
ORF7a	120	T120R	aCa	aGa	44	45	All	0.000008
ORF7a	120	T120R	ACa	CGa	1	45	All	0
ORF7a	120	T120P	Aca	Cca	39	42	All	0.000007
ORF7a	120	T120P	AcA	CcT	2	42	All	0
ORF7a	120	T120P	AcA	CcG	1	42	All	0
ORF7a	120	T120del	ACA	---	40	40	B.1.2	0.000352
ORF7a	120	T120I	aCa	aTa	40	40	B.1.621	0.003541
ORF7a	120	T120V	ACa	GTa	38	38	B.1.617.2	0.000143
ORF7a	120	T120I	aCa	aTa	37	37	B.1.351	0.0011
ORF7a	120	T120del	ACA	---	37	37	B.1.617.2	0.000139
ORF7a	120	T120I	aCa	aTa	36	36	B.1.177.11	0.061121
ORF7a	120	T120del	ACA	---	35	35	AY.103	0.000217
ORF7a	120	T120I	aCa	aTa	35	35	B.1.221	0.002486
ORF7a	120	T120A	Aca	Gca	33	34	All	0.000006
ORF7a	120	T120A	AcA	GcG	1	34	All	0
ORF7a	120	T120I	aCa	aTa	34	34	B.1.1.377	0.046961
ORF7a	120	T120K	aCa	aAa	31	33	All	0.000006
ORF7a	120	T120K	aCA	aAG	2	33	All	0
ORF7a	120	T120del	ACA	---	33	33	AY.74	0.003816
ORF7a	120	T120I	aCa	aTa	33	33	B.1.1.222	0.006732
ORF7a	120	T120I	aCa	aTa	33	33	Q.8	0.005442
ORF7a	120	T120del	ACA	---	32	32	AY.42	0.001287
ORF7a	120	T120I	aCa	aTa	31	31	B.1.160	0.000967
ORF7a	120	T120I	aCa	aTa	31	31	P.1.15	0.007203
ORF7a	120	T120del1	aCa	a-a	12	30	All	0.000002
ORF7a	120	T120del1	Aca	-ca	10	30	All	0.000002
ORF7a	120	T120del1	acA	ac-	5	30	All	0.000001
ORF7a	120	T120del1	ACa	-Na	2	30	All	0
ORF7a	120	T120del1	ACA	-NN	1	30	All	0
ORF7a	120	T120I	aCa	aTa	30	30	B	0.003834
ORF7a	120	T120del	ACA	---	29	29	AY.43	0.000128
ORF7a	120	T120del	ACA	---	28	28	AY.3	0.000278
ORF7a	120	T120R	aCa	aGa	28	28	P.1	0.000441
ORF7a	120	T120del	ACA	---	27	27	AY.29	0.000426
ORF7a	120	T120V	ACa	GTa	26	26	AY.103	0.000161
ORF7a	120	T120I	aCa	aTa	26	26	B.1.214	0.095238
ORF7a	120	T120I	aCa	aTa	26	26	B.1.596	0.002266
ORF7a	120	T120I	aCa	aTa	24	24	B.1.617.1	0.003095
ORF7a	120	T120I	aCa	aTa	24	24	C.37	0.002786
ORF7a	120	T120S	Aca	Tca	23	23	B.1.1	0.000417
ORF7a	120	T120del	ACA	---	22	22	AY.26	0.000623
ORF7a	120	T120I	aCa	aTa	22	22	B.1.177.60	0.004806
ORF7a	120	T120T	acA	acC	22	22	B.1.237	0.109453
ORF7a	120	T120del	ACA	---	21	21	AY.53	0.006038
ORF7a	120	T120I	aCa	aTa	21	21	B.1.1.519	0.000834
ORF7a	120	T120I	aCa	aTa	20	20	B.1.1.33	0.008418
ORF7a	120	T120I	aCa	aTa	19	19	B.1.525	0.00215
ORF7a	120	T120del	ACA	---	18	18	B.1.1	0.000327
ORF7a	120	T120del	ACA	---	18	18	C.37	0.002089
ORF7a	120	T120del	ACA	---	17	17	AY.39	0.00042
ORF7a	120	T120del	ACA	---	16	16	AY.44	0.000097
ORF7a	120	T120I	aCa	aTa	16	16	B.1.1.58	0.086022
ORF7a	120	T120V	ACa	GTa	15	15	AY.5	0.00031
ORF7a	120	T120del	ACA	---	15	15	B.1.427	0.000757
ORF7a	120	T120del	ACA	---	14	14	B.1.1.37	0.0027
ORF7a	120	T120I	aCa	aTa	14	14	B.1.177.82	0.006683
ORF7a	120	T120T	acA	acT	13	14	B.1.258	0.000865
ORF7a	120	T120T	acA	acG	1	14	B.1.258	0.000067
ORF7a	120	T120I	aCa	aTa	14	14	B.1.258.17	0.001456
ORF7a	120	T120I	aCa	aTa	14	14	B.1.595	0.003653
ORF7a	120	T120M	aCA	aTG	13	13	AY.4	0.00002
ORF7a	120	T120del	ACA	---	13	13	B.1	0.000119
ORF7a	120	T120I	aCa	aTa	13	13	B.1.1.63	0.005015
ORF7a	120	T120K	aCa	aAa	13	13	B.1.1.7	0.000012
ORF7a	120	T120I	aCa	aTa	13	13	B.1.258	0.000865
ORF7a	120	T120I	aCa	aTa	13	13	P.1.12	0.006292
ORF7a	120	T120del	ACA	---	12	12	B.1.177	0.000158
ORF7a	120	T120A	Aca	Gca	12	12	B.1.221	0.000852
ORF7a	120	T120I	aCa	aTa	12	12	B.1.36	0.001751
ORF7a	120	T120I	aCa	aTa	12	12	P.1.17	0.001941
ORF7a	120	T120P	Aca	Cca	11	11	AY.3	0.000109
ORF7a	120	T120S	Aca	Tca	11	11	B.1.1.7	0.00001
ORF7a	120	T120I	aCa	aTa	11	11	B.1.526	0.000259
ORF7a	120	T120del	ACA	---	11	11	Q.8	0.001814
ORF7a	120	T120del	ACA	---	10	10	AY.120	0.000372
ORF7a	120	T120del2	ACa	--a	10	10	AY.29	0.000158
ORF7a	120	T120M	aCA	aTG	10	10	AY.43	0.000044
ORF7a	120	T120I	aCa	aTa	10	10	B.1.1.141	0.020121
ORF7a	120	T120P	Aca	Cca	10	10	B.1.177.81	0.001893
ORF7a	120	T120del	ACA	---	10	10	B.1.234	0.001319
ORF7a	120	T120I	aCa	aTa	10	10	B.1.243	0.000696
ORF7a	120	T120del	ACA	---	10	10	B.1.429	0.000235
ORF7a	120	T120I	aCa	aTa	10	10	B.1.628	0.003524
ORF7a	120	T120del	ACA	---	9	9	AY.113	0.001282
ORF7a	120	T120L	ACa	CTa	9	9	AY.116.1	0.002803
ORF7a	120	T120del	ACA	---	9	9	AY.6	0.00037
ORF7a	120	T120del	ACA	---	9	9	B.1.1.214	0.000499
ORF7a	120	T120del	ACA	---	9	9	B.1.1.519	0.000357
ORF7a	120	T120I	aCa	aTa	9	9	B.1.36.16	0.012821
ORF7a	120	T120I	aCa	aTa	9	9	B.1.427	0.000454
ORF7a	120	T120I	aCa	aTa	9	9	D.2	0.000675
ORF7a	120	T120I	aCa	aTa	9	9	Q.1	0.001137
ORF7a	120	T120del	ACA	---	8	8	AY.102	0.000212
ORF7a	120	T120V	ACa	GTa	8	8	AY.119	0.000282
ORF7a	120	T120V	ACa	GTa	8	8	AY.43	0.000035
ORF7a	120	T120del	ACA	---	8	8	AY.91	0.005844
ORF7a	120	T120T	acA	acG	4	8	B.1	0.000037
ORF7a	120	T120T	acA	acT	2	8	B.1	0.000018
ORF7a	120	T120T	acA	acC	2	8	B.1	0.000018
ORF7a	120	T120T	acA	acG	5	8	B.1.2	0.000044
ORF7a	120	T120T	acA	acC	2	8	B.1.2	0.000018
ORF7a	120	T120T	acA	acT	1	8	B.1.2	0.000009
ORF7a	120	T120I	aCa	aTa	8	8	B.1.234	0.001056
ORF7a	120	T120L	ACa	TTa	7	8	B.1.617.2	0.000026
ORF7a	120	T120L	ACa	CTa	1	8	B.1.617.2	0.000004
ORF7a	120	T120I	aCa	aTa	8	8	B.1.619.1	0.005131
ORF7a	120	T120F	ACA	TTC	7	7	All	0.000001
ORF7a	120	T120I	aCa	aTa	7	7	AU.2	0.016949
ORF7a	120	T120L	ACa	CTa	6	7	AY.4	0.000009
ORF7a	120	T120L	ACa	TTa	1	7	AY.4	0.000002
ORF7a	120	T120del2	ACa	--a	7	7	AY.44	0.000043
ORF7a	120	T120V	ACa	GTa	7	7	AY.46.6	0.000505
ORF7a	120	T120del	ACA	---	7	7	AY.5	0.000145
ORF7a	120	T120M	aCA	aTG	7	7	AY.84	0.003062
ORF7a	120	T120I	aCa	aTa	7	7	B.1.1.433	0.009972
ORF7a	120	T120A	Aca	Gca	7	7	B.1.1.7	0.000006
ORF7a	120	T120del1	Aca	-ca	5	7	B.1.1.7	0.000004
ORF7a	120	T120del1	acA	ac-	2	7	B.1.1.7	0.000002
ORF7a	120	T120del	ACA	---	7	7	B.1.258.17	0.000728
ORF7a	120	T120I	aCa	aTa	7	7	B.1.258.21	0.054264
ORF7a	120	T120I	aCa	aTa	7	7	B.1.466.2	0.002739
ORF7a	120	T120M	aCA	aTG	6	6	AY.103	0.000037
ORF7a	120	T120V	ACa	GTa	6	6	AY.4	0.000009
ORF7a	120	T120M	aCA	aTG	6	6	AY.46	0.000624
ORF7a	120	T120I	aCa	aTa	6	6	B.1.1.306	0.00263
ORF7a	120	T120F	ACA	TTC	6	6	B.1.1.7	0.000005
ORF7a	120	T120del2	ACa	--a	3	6	B.1.1.7	0.000003
ORF7a	120	T120del2	aCA	a--	3	6	B.1.1.7	0.000003
ORF7a	120	T120I	aCa	aTa	6	6	B.1.177.4	0.001266
ORF7a	120	T120del	ACA	---	6	6	B.1.526	0.000141
ORF7a	120	T120I	aCa	aTa	6	6	B.1.609	0.002876
ORF7a	120	T120I	aCa	aTa	6	6	B.1.637	0.000438
ORF7a	120	T120T	acA	acT	4	5		0.222222
ORF7a	120	T120I	aCa	aTa	3	5		0.166667
ORF7a	120	T120I	aCA	aTT	2	5		0.111111
ORF7a	120	T120T	acA	acC	1	5		0.055556
ORF7a	120	T120M	aCA	aTG	5	5	AY.33	0.000334
ORF7a	120	T120del	ACA	---	5	5	AY.4.2	0.000108
ORF7a	120	T120M	aCA	aTG	5	5	AY.75	0.00028
ORF7a	120	T120I	aCa	aTa	5	5	B.1.1.28	0.001556
ORF7a	120	T120del	ACA	---	5	5	B.1.1.318	0.001509
ORF7a	120	T120T	acA	acG	5	5	B.1.1.440	0.058824
ORF7a	120	T120R	aCa	aGa	4	5	B.1.1.7	0.000004
ORF7a	120	T120R	ACa	CGa	1	5	B.1.1.7	0.000001
ORF7a	120	T120I	aCa	aTa	5	5	B.1.177.69	0.007418
ORF7a	120	T120I	aCa	aTa	5	5	B.1.177.73	0.002831
ORF7a	120	T120del	ACA	---	5	5	B.1.351	0.000149
ORF7a	120	T120I	aCa	aTa	5	5	B.1.576	0.004533
ORF7a	120	T120T	acA	acG	5	5	C.37	0.00058
ORF7a	120	T120T	acA	acT	4	5	D.2	0.0003
ORF7a	120	T120T	acA	acG	1	5	D.2	0.000075
ORF7a	120	T120P	Aca	Cca	5	5	P.1	0.000079
ORF7a	120	T120del	ACA	---	5	5	P.1.14	0.000239
ORF7a	120	T120del	ACA	---	5	5	P.2	0.000933
ORF7a	120	T120L	ACA	CTT	2	4		0.111111
ORF7a	120	T120P	Aca	Cca	2	4		0.111111
ORF7a	120	T120L	ACa	CTa	2	4		0.111111
ORF7a	120	T120P	AcA	CcT	2	4		0.111111
ORF7a	120	T120I	aCa	aTa	4	4	A.2.5	0.001996
ORF7a	120	T120L	ACa	TTa	3	4	AY.102	0.00008
ORF7a	120	T120L	ACa	CTa	1	4	AY.102	0.000027
ORF7a	120	T120del	ACA	---	4	4	AY.114	0.000924
ORF7a	120	T120M	aCA	aTG	4	4	AY.14	0.000352
ORF7a	120	T120K	aCa	aAa	3	4	AY.43	0.000013
ORF7a	120	T120K	aCA	aAG	1	4	AY.43	0.000004
ORF7a	120	T120M	aCA	aTG	4	4	AY.45	0.000487
ORF7a	120	T120del	ACA	---	4	4	AY.79	0.004843
ORF7a	120	T120I	aCa	aTa	4	4	B.1.1.207	0.004728
ORF7a	120	T120del	ACA	---	4	4	B.1.1.284	0.00043
ORF7a	120	T120I	aCa	aTa	4	4	B.1.1.284	0.00043
ORF7a	120	T120I	aCa	aTa	4	4	B.1.1.311	0.001433
ORF7a	120	T120P	Aca	Cca	4	4	B.1.1.7	0.000004
ORF7a	120	T120I	aCa	aTa	4	4	B.1.111	0.0047
ORF7a	120	T120del	ACA	---	4	4	B.1.177.21	0.000306
ORF7a	120	T120del	ACA	---	4	4	B.1.177.7	0.000659
ORF7a	120	T120A	Aca	Gca	4	4	B.1.2	0.000035
ORF7a	120	T120P	Aca	Cca	3	4	B.1.2	0.000026
ORF7a	120	T120P	AcA	CcG	1	4	B.1.2	0.000009
ORF7a	120	T120del	ACA	---	4	4	B.1.351.2	0.00121
ORF7a	120	T120I	aCa	aTa	4	4	B.1.375	0.003279
ORF7a	120	T120I	aCa	aTa	4	4	B.1.499	0.004202
ORF7a	120	T120del	ACA	---	4	4	B.1.621	0.000354
ORF7a	120	T120I	aCa	aTa	4	4	C.36.2	0.137931
ORF7a	120	T120I	aCa	aTa	4	4	P.1.1	0.001271
ORF7a	120	T120K	aCa	aAa	4	4	P.1.14	0.000191
ORF7a	120	T120I	aCa	aTa	4	4	P.1.14	0.000191
ORF7a	120	T120T	acA	acG	4	4	Q.1	0.000505
ORF7a	120	T120I	aCa	aTa	3	3	A	0.001161
ORF7a	120	T120del	ACA	---	3	3	AY.20	0.000117
ORF7a	120	T120M	aCA	aTG	3	3	AY.25	0.000018
ORF7a	120	T120del	ACA	---	3	3	AY.27	0.000194
ORF7a	120	T120del1	aCa	a-a	3	3	AY.39	0.000074
ORF7a	120	T120del2	ACa	--a	3	3	AY.4	0.000005
ORF7a	120	T120V	ACa	GTa	3	3	AY.75	0.000168
ORF7a	120	T120T	acA	acC	2	3	B.1.1	0.000036
ORF7a	120	T120T	acA	acT	1	3	B.1.1	0.000018
ORF7a	120	T120I	aCa	aTa	3	3	B.1.1.170	0.003741
ORF7a	120	T120I	aCa	aTa	3	3	B.1.1.318	0.000905
ORF7a	120	T120I	aCa	aTa	3	3	B.1.1.432	0.003797
ORF7a	120	T120del	ACA	---	3	3	B.1.1.434	0.001046
ORF7a	120	T120del	ACA	---	3	3	B.1.1.58	0.016129
ORF7a	120	T120I	aCa	aTa	3	3	B.1.110.3	0.002155
ORF7a	120	T120I	aCa	aTa	3	3	B.1.157	0.008955
ORF7a	120	T120I	aCa	aTa	3	3	B.1.177.7	0.000495
ORF7a	120	T120I	aCa	aTa	3	3	B.1.201	0.017045
ORF7a	120	T120del	ACA	---	3	3	B.1.258	0.0002
ORF7a	120	T120I	aCa	aTa	3	3	B.1.311	0.000824
ORF7a	120	T120del	ACA	---	3	3	B.1.36	0.000438
ORF7a	120	T120S	Aca	Tca	3	3	B.1.389	0.003006
ORF7a	120	T120I	aCa	aTa	3	3	B.1.437	0.0625
ORF7a	120	T120I	aCa	aTa	3	3	B.1.485	0.044776
ORF7a	120	T120I	aCa	aTa	3	3	B.1.509	0.002597
ORF7a	120	T120del	ACA	---	3	3	B.1.525	0.000339
ORF7a	120	T120A	Aca	Gca	3	3	B.1.565	0.002431
ORF7a	120	T120del	ACA	---	3	3	B.1.596	0.000261
ORF7a	120	T120del	ACA	---	3	3	B.1.621.1	0.001517
ORF7a	120	T120I	aCa	aTa	3	3	B.1.623	0.001609
ORF7a	120	T120del	ACA	---	3	3	B.1.626	0.017143
ORF7a	120	T120del	ACA	---	3	3	B.1.628	0.001057
ORF7a	120	T120del	ACA	---	3	3	B.1.637	0.000219
ORF7a	120	T120T	acA	acG	3	3	C.14	0.012987
ORF7a	120	T120I	aCa	aTa	3	3	C.36.3	0.001702
ORF7a	120	T120R	aCa	aGa	3	3	P.1.1	0.000953
ORF7a	120	T120I	aCa	aTa	3	3	P.1.10	0.000808
ORF7a	120	T120del	ACA	---	3	3	P.1.15	0.000697
ORF7a	120	T120I	aCa	aTa	3	3	P.1.16	0.001122
ORF7a	120	T120I	aCa	aTa	3	3	P.1.7	0.000958
ORF7a	120	T120I	aCa	aTa	3	3	P.2	0.00056
ORF7a	120	T120del	ACA	---	3	3	Q.1	0.000379
ORF7a	120	T120I	aCa	aTa	3	3	Q.4	0.001364
ORF7a	120	T120I	aCa	aTa	3	3	R.1	0.00027
ORF7a	120	T120I	aCa	aTa	3	3	W.4	0.004054
ORF7a	120	T120X	ACa	TAa	1	2	All	0
ORF7a	120	T120X	ACa	TGa	1	2	All	0
ORF7a	120	T120I	aCa	aTa	2	2	AU.3	0.004219
ORF7a	120	T120P	Aca	Cca	2	2	AY.100	0.000092
ORF7a	120	T120del	ACA	---	2	2	AY.100	0.000092
ORF7a	120	T120V	ACa	GTa	2	2	AY.102	0.000053
ORF7a	120	T120del2	ACa	--a	2	2	AY.103	0.000012
ORF7a	120	T120del	ACA	---	2	2	AY.108	0.002205
ORF7a	120	T120del	ACA	---	2	2	AY.116	0.000574
ORF7a	120	T120del	ACA	---	2	2	AY.117	0.000169
ORF7a	120	T120del	ACA	---	2	2	AY.118	0.000125
ORF7a	120	T120del	ACA	---	2	2	AY.119	0.000071
ORF7a	120	T120M	aCA	aTG	2	2	AY.120	0.000074
ORF7a	120	T120del	ACA	---	2	2	AY.121	0.000271
ORF7a	120	T120del2	ACa	--a	2	2	AY.20	0.000078
ORF7a	120	T120L	ACa	CTa	2	2	AY.23	0.000139
ORF7a	120	T120del1	ACa	-Na	2	2	AY.26	0.000057
ORF7a	120	T120L	ACa	TTa	2	2	AY.26	0.000057
ORF7a	120	T120V	ACa	GTa	2	2	AY.29	0.000032
ORF7a	120	T120K	aCa	aAa	2	2	AY.3	0.00002
ORF7a	120	T120L	ACa	TTa	2	2	AY.33	0.000134
ORF7a	120	T120V	ACa	GTa	2	2	AY.36	0.000296
ORF7a	120	T120S	Aca	Tca	2	2	AY.4	0.000003
ORF7a	120	T120L	ACa	TTa	2	2	AY.45	0.000243
ORF7a	120	T120V	ACa	GTa	2	2	AY.45	0.000243
ORF7a	120	T120del	ACA	---	2	2	AY.46.5	0.000397
ORF7a	120	T120L	ACa	CTa	2	2	AY.47	0.000062
ORF7a	120	T120del	ACA	---	2	2	AY.47	0.000062
ORF7a	120	T120del2	aCA	a--	2	2	AY.47	0.000062
ORF7a	120	T120V	ACa	GTa	2	2	AY.48	0.00093
ORF7a	120	T120M	aCA	aTG	2	2	AY.5.4	0.000553
ORF7a	120	T120del	ACA	---	2	2	AY.59	0.001059
ORF7a	120	T120V	ACa	GTa	2	2	AY.93	0.000546
ORF7a	120	T120del	ACA	---	2	2	AY.94	0.000885
ORF7a	120	T120I	aCa	aTa	2	2	AZ.2	0.001642
ORF7a	120	T120del	ACA	---	2	2	B.1.1.1	0.000653
ORF7a	120	T120del1	Aca	-ca	2	2	B.1.1.155	0.142857
ORF7a	120	T120I	aCa	aTa	2	2	B.1.1.274	0.010101
ORF7a	120	T120del	ACA	---	2	2	B.1.1.280	0.006173
ORF7a	120	T120I	aCa	aTa	2	2	B.1.1.294	0.002532
ORF7a	120	T120I	aCa	aTa	2	2	B.1.1.317	0.000823
ORF7a	120	T120I	aCa	aTa	2	2	B.1.1.329	0.007692
ORF7a	120	T120del	ACA	---	2	2	B.1.1.33	0.000842
ORF7a	120	T120I	aCa	aTa	2	2	B.1.1.372	0.001377
ORF7a	120	T120I	aCa	aTa	2	2	B.1.1.524	0.041667
ORF7a	120	T120M	aCA	aTG	2	2	B.1.1.7	0.000002
ORF7a	120	T120I	aCa	aTa	2	2	B.1.1.70	0.000682
ORF7a	120	T120del	ACA	---	2	2	B.1.160	0.000062
ORF7a	120	T120I	aCa	aTa	2	2	B.1.160.32	0.008584
ORF7a	120	T120del	ACA	---	2	2	B.1.177.50	0.00939
ORF7a	120	T120del	ACA	---	2	2	B.1.177.60	0.000437
ORF7a	120	T120del	ACA	---	2	2	B.1.177.86	0.000367
ORF7a	120	T120S	Aca	Tca	2	2	B.1.2	0.000018
ORF7a	120	T120del	ACA	---	2	2	B.1.221	0.000142
ORF7a	120	T120T	acA	acT	2	2	B.1.240	0.000431
ORF7a	120	T120del	ACA	---	2	2	B.1.243	0.000139
ORF7a	120	T120I	aCa	aTa	2	2	B.1.247	0.029851
ORF7a	120	T120del2	ACa	--a	2	2	B.1.258.11	0.000793
ORF7a	120	T120I	aCa	aTa	2	2	B.1.258.14	0.001961
ORF7a	120	T120I	aCa	aTa	2	2	B.1.284	0.026316
ORF7a	120	T120I	aCa	aTa	2	2	B.1.349	0.00143
ORF7a	120	T120I	aCa	aTa	2	2	B.1.369	0.00057
ORF7a	120	T120I	aCa	aTa	2	2	B.1.400	0.000858
ORF7a	120	T120I	aCa	aTa	2	2	B.1.409	0.001563
ORF7a	120	T120I	aCa	aTa	2	2	B.1.416.1	0.003125
ORF7a	120	T120R	aCa	aGa	2	2	B.1.429	0.000047
ORF7a	120	T120I	aCa	aTa	2	2	B.1.438.1	0.000215
ORF7a	120	T120del	ACA	---	2	2	B.1.466.2	0.000782
ORF7a	120	T120I	aCa	aTa	2	2	B.1.580	0.00813
ORF7a	120	T120I	aCa	aTa	2	2	B.1.597	0.009259
ORF7a	120	T120I	aCa	aTa	2	2	B.1.604	0.034483
ORF7a	120	T120del	ACA	---	2	2	B.1.612	0.005305
ORF7a	120	T120del1	aCa	a-a	2	2	B.1.617.1	0.000258
ORF7a	120	T120del1	aCa	a-a	2	2	B.1.617.2	0.000008
ORF7a	120	T120del2	aCA	a--	1	2	B.1.617.2	0.000004
ORF7a	120	T120del2	ACa	--a	1	2	B.1.617.2	0.000004
ORF7a	120	T120I	aCa	aTa	2	2	B.1.619	0.001742
ORF7a	120	T120I	aCa	aTa	2	2	B.1.621.1	0.001012
ORF7a	120	T120I	aCa	aTa	2	2	C.36.3.1	0.005435
ORF7a	120	T120T	acA	acT	2	2	P.1	0.000032
ORF7a	120	T120I	aCa	aTa	2	2	P.1.13	0.001797
ORF7a	120	T120I	aCa	aTa	2	2	Q.7	0.002222
ORF7a	120	T120K	aCa	aAa	1	1		0.055556
ORF7a	120	T120R	aCa	aGa	1	1		0.055556
ORF7a	120	T120S	aCA	aGC	1	1		0.055556
ORF7a	120	T120N	aCA	aAC	1	1		0.055556
ORF7a	120	T120del	ACA	---	1	1	A	0.000387
ORF7a	120	T120del	ACA	---	1	1	A.1	0.000282
ORF7a	120	T120I	aCa	aTa	1	1	A.2	0.000662
ORF7a	120	T120del	ACA	---	1	1	A.2.2	0.001689
ORF7a	120	T120I	aCa	aTa	1	1	A.2.3	0.004739
ORF7a	120	T120I	aCa	aTa	1	1	A.2.5.1	0.004808
ORF7a	120	T120T	acA	acG	1	1	A.2.5.2	0.001572
ORF7a	120	T120del	ACA	---	1	1	A.23	0.010526
ORF7a	120	T120I	aCa	aTa	1	1	A.23.1	0.000704
ORF7a	120	T120T	acA	acT	1	1	A.25	0.018182
ORF7a	120	T120I	aCa	aTa	1	1	A.27	0.001656
ORF7a	120	T120I	aCa	aTa	1	1	AD.2	0.000219
ORF7a	120	T120del	ACA	---	1	1	AE.8	0.000489
ORF7a	120	T120del	ACA	---	1	1	AH.3	0.003802
ORF7a	120	T120Y	ACA	TAT	1	1	All	0
ORF7a	120	T120Q	ACa	CAa	1	1	All	0
ORF7a	120	T120N	aCA	aAC	1	1	All	0
ORF7a	120	T120E	ACa	GAa	1	1	All	0
ORF7a	120	T120del	ACA	---	1	1	AU.1	0.001266
ORF7a	120	T120K	aCa	aAa	1	1	AY.100	0.000046
ORF7a	120	T120V	ACa	GTa	1	1	AY.100	0.000046
ORF7a	120	T120L	ACa	TTa	1	1	AY.100	0.000046
ORF7a	120	T120Q	ACa	CAa	1	1	AY.103	0.000006
ORF7a	120	T120K	aCa	aAa	1	1	AY.103	0.000006
ORF7a	120	T120V	ACa	GTa	1	1	AY.107	0.000466
ORF7a	120	T120M	aCA	aTG	1	1	AY.117	0.000085
ORF7a	120	T120del2	aCA	a--	1	1	AY.12	0.000316
ORF7a	120	T120R	aCa	aGa	1	1	AY.120.1	0.000321
ORF7a	120	T120del	ACA	---	1	1	AY.120.1	0.000321
ORF7a	120	T120X	ACa	TAa	1	1	AY.120.1	0.000321
ORF7a	120	T120del	ACA	---	1	1	AY.120.2.1	0.000498
ORF7a	120	T120V	ACa	GTa	1	1	AY.121	0.000135
ORF7a	120	T120del1	aCa	a-a	1	1	AY.16	0.00038
ORF7a	120	T120V	ACa	GTa	1	1	AY.16	0.00038
ORF7a	120	T120T	acA	acC	1	1	AY.20	0.000039
ORF7a	120	T120del	ACA	---	1	1	AY.23	0.00007
ORF7a	120	T120V	ACa	GTa	1	1	AY.23	0.00007
ORF7a	120	T120del	ACA	---	1	1	AY.24	0.000431
ORF7a	120	T120L	ACa	TTa	1	1	AY.25	0.000006
ORF7a	120	T120del2	aCA	a--	1	1	AY.26	0.000028
ORF7a	120	T120M	aCA	aTG	1	1	AY.3	0.00001
ORF7a	120	T120del2	ACa	--a	1	1	AY.3.1	0.000085
ORF7a	120	T120R	aCa	aGa	1	1	AY.33	0.000067
ORF7a	120	T120del	ACA	---	1	1	AY.34	0.000097
ORF7a	120	T120M	aCA	aTG	1	1	AY.35	0.000233
ORF7a	120	T120S	aCA	aGC	1	1	AY.36	0.000148
ORF7a	120	T120del	ACA	---	1	1	AY.37	0.000316
ORF7a	120	T120M	aCA	aTG	1	1	AY.39	0.000025
ORF7a	120	T120L	ACa	TTa	1	1	AY.39.1	0.00004
ORF7a	120	T120del1	aCa	a-a	1	1	AY.39.1.1	0.000725
ORF7a	120	T120del1	Aca	-ca	1	1	AY.4	0.000002
ORF7a	120	T120T	acA	acT	1	1	AY.4.5	0.000107
ORF7a	120	T120del	ACA	---	1	1	AY.4.5	0.000107
ORF7a	120	T120M	aCA	aTG	1	1	AY.42	0.00004
ORF7a	120	T120del1	Aca	-ca	1	1	AY.42	0.00004
ORF7a	120	T120del1	aCa	a-a	1	1	AY.43	0.000004
ORF7a	120	T120del2	aCA	a--	1	1	AY.43	0.000004
ORF7a	120	T120V	ACa	GTa	1	1	AY.44	0.000006
ORF7a	120	T120L	ACa	TTa	1	1	AY.44	0.000006
ORF7a	120	T120K	aCA	aAG	1	1	AY.44	0.000006
ORF7a	120	T120M	aCA	aTG	1	1	AY.44	0.000006
ORF7a	120	T120M	aCA	aTG	1	1	AY.46.4	0.000165
ORF7a	120	T120L	ACa	CTa	1	1	AY.46.4	0.000165
ORF7a	120	T120S	Aca	Tca	1	1	AY.46.6	0.000072
ORF7a	120	T120V	ACa	GTa	1	1	AY.47	0.000031
ORF7a	120	T120L	ACa	CTa	1	1	AY.5	0.000021
ORF7a	120	T120del	ACA	---	1	1	AY.5.3	0.000337
ORF7a	120	T120del	ACA	---	1	1	AY.5.4	0.000277
ORF7a	120	T120del1	aCa	a-a	1	1	AY.50	0.000799
ORF7a	120	T120V	ACa	GTa	1	1	AY.51	0.000909
ORF7a	120	T120L	ACa	TTa	1	1	AY.53	0.000288
ORF7a	120	T120L	ACa	CTa	1	1	AY.56	0.001605
ORF7a	120	T120K	aCa	aAa	1	1	AY.59	0.00053
ORF7a	120	T120M	aCA	aTG	1	1	AY.59	0.00053
ORF7a	120	T120del2	ACa	--a	1	1	AY.6	0.000041
ORF7a	120	T120L	ACa	CTa	1	1	AY.6	0.000041
ORF7a	120	T120del	ACA	---	1	1	AY.60	0.000938
ORF7a	120	T120del1	aCa	a-a	1	1	AY.61	0.000105
ORF7a	120	T120del2	ACa	--a	1	1	AY.7.2	0.000559
ORF7a	120	T120V	ACa	GTa	1	1	AY.74	0.000116
ORF7a	120	T120L	ACa	CTa	1	1	AY.75	0.000056
ORF7a	120	T120del	ACA	---	1	1	AY.75	0.000056
ORF7a	120	T120V	ACa	GTa	1	1	AY.75.1	0.00018
ORF7a	120	T120K	aCa	aAa	1	1	AY.75.1	0.00018
ORF7a	120	T120R	aCa	aGa	1	1	AY.82	0.001357
ORF7a	120	T120del	ACA	---	1	1	AY.87	0.000833
ORF7a	120	T120L	ACa	CTa	1	1	AY.88	0.000884
ORF7a	120	T120del	ACA	---	1	1	AY.88	0.000884
ORF7a	120	T120del	ACA	---	1	1	AY.9	0.000068
ORF7a	120	T120del	ACA	---	1	1	AY.9.1	0.000084
ORF7a	120	T120V	ACa	GTa	1	1	AY.92	0.000287
ORF7a	120	T120del	ACA	---	1	1	AY.98.1	0.000048
ORF7a	120	T120del	ACA	---	1	1	AZ.2	0.000821
ORF7a	120	T120del	ACA	---	1	1	AZ.3	0.00152
ORF7a	120	T120A	Aca	Gca	1	1	B	0.000128
ORF7a	120	T120del	ACA	---	1	1	B	0.000128
ORF7a	120	T120A	Aca	Gca	1	1	B.1	0.000009
ORF7a	120	T120del1	acA	ac-	1	1	B.1	0.000009
ORF7a	120	T120del2	ACa	--a	1	1	B.1	0.000009
ORF7a	120	T120del2	aCA	a--	1	1	B.1.1	0.000018
ORF7a	120	T120I	aCa	aTa	1	1	B.1.1.121	0.002427
ORF7a	120	T120I	aCa	aTa	1	1	B.1.1.129	0.009174
ORF7a	120	T120I	aCa	aTa	1	1	B.1.1.148	0.008772
ORF7a	120	T120del	ACA	---	1	1	B.1.1.165	0.015385
ORF7a	120	T120I	aCa	aTa	1	1	B.1.1.176	0.000439
ORF7a	120	T120I	aCa	aTa	1	1	B.1.1.214	0.000055
ORF7a	120	T120I	aCa	aTa	1	1	B.1.1.220	0.001859
ORF7a	120	T120del	ACA	---	1	1	B.1.1.222	0.000204
ORF7a	120	T120del	ACA	---	1	1	B.1.1.231	0.003096
ORF7a	120	T120I	aCa	aTa	1	1	B.1.1.25	0.000569
ORF7a	120	T120T	acA	acT	1	1	B.1.1.25	0.000569
ORF7a	120	T120del	ACA	---	1	1	B.1.1.265	0.003155
ORF7a	120	T120I	aCa	aTa	1	1	B.1.1.280	0.003086
ORF7a	120	T120I	aCa	aTa	1	1	B.1.1.297	0.002237
ORF7a	120	T120I	aCa	aTa	1	1	B.1.1.298	0.000862
ORF7a	120	T120I	aCa	aTa	1	1	B.1.1.316	0.000925
ORF7a	120	T120I	aCa	aTa	1	1	B.1.1.348	0.000796
ORF7a	120	T120I	aCa	aTa	1	1	B.1.1.37	0.000193
ORF7a	120	T120del	ACA	---	1	1	B.1.1.397	0.002252
ORF7a	120	T120T	acA	acT	1	1	B.1.1.411	0.014706
ORF7a	120	T120I	aCa	aTa	1	1	B.1.1.412	0.007634
ORF7a	120	T120I	aCa	aTa	1	1	B.1.1.413	0.006897
ORF7a	120	T120del2	aCA	a--	1	1	B.1.1.482	0.023256
ORF7a	120	T120I	aCa	aTa	1	1	B.1.1.483	0.038462
ORF7a	120	T120I	aCa	aTa	1	1	B.1.1.507	0.008696
ORF7a	120	T120I	aCa	aTa	1	1	B.1.1.512	0.028571
ORF7a	120	T120I	aCa	aTa	1	1	B.1.1.523	0.001563
ORF7a	120	T120I	aCa	aTa	1	1	B.1.1.526	0.003546
ORF7a	120	T120I	aCa	aTa	1	1	B.1.1.57	0.011494
ORF7a	120	T120I	aCa	aTa	1	1	B.1.1.67	0.004566
ORF7a	120	T120V	ACA	GTT	1	1	B.1.1.7	0.000001
ORF7a	120	T120X	ACa	TGa	1	1	B.1.1.7	0.000001
ORF7a	120	T120del	ACA	---	1	1	B.1.1.70	0.000341
ORF7a	120	T120del	ACA	---	1	1	B.1.110.3	0.000718
ORF7a	120	T120T	acA	acT	1	1	B.1.12	0.008
ORF7a	120	T120I	aCa	aTa	1	1	B.1.131	0.008772
ORF7a	120	T120I	aCa	aTa	1	1	B.1.142	0.002899
ORF7a	120	T120T	acA	acG	1	1	B.1.160	0.000031
ORF7a	120	T120A	Aca	Gca	1	1	B.1.160	0.000031
ORF7a	120	T120I	aCa	aTa	1	1	B.1.160.20	0.008929
ORF7a	120	T120I	aCa	aTa	1	1	B.1.160.30	0.002976
ORF7a	120	T120S	Aca	Tca	1	1	B.1.177	0.000013
ORF7a	120	T120P	Aca	Cca	1	1	B.1.177	0.000013
ORF7a	120	T120T	acA	acT	1	1	B.1.177.15	0.000631
ORF7a	120	T120K	aCa	aAa	1	1	B.1.177.21	0.000076
ORF7a	120	T120del	ACA	---	1	1	B.1.177.42	0.000894
ORF7a	120	T120del	ACA	---	1	1	B.1.177.44	0.000519
ORF7a	120	T120P	Aca	Cca	1	1	B.1.177.50	0.004695
ORF7a	120	T120del	ACA	---	1	1	B.1.177.57	0.000281
ORF7a	120	T120S	Aca	Tca	1	1	B.1.177.57	0.000281
ORF7a	120	T120A	AcA	GcG	1	1	B.1.177.63	0.002703
ORF7a	120	T120I	aCa	aTa	1	1	B.1.177.75	0.001041
ORF7a	120	T120del	ACA	---	1	1	B.1.177.77	0.000726
ORF7a	120	T120del	ACA	---	1	1	B.1.177.87	0.000728
ORF7a	120	T120del1	acA	ac-	1	1	B.1.2	0.000009
ORF7a	120	T120I	aCa	aTa	1	1	B.1.206	0.000816
ORF7a	120	T120del	ACA	---	1	1	B.1.214.2	0.0006
ORF7a	120	T120I	aCa	aTa	1	1	B.1.214.2	0.0006
ORF7a	120	T120I	aCa	aTa	1	1	B.1.219	0.009434
ORF7a	120	T120T	acA	acG	1	1	B.1.232	0.000537
ORF7a	120	T120del	ACA	---	1	1	B.1.235	0.002519
ORF7a	120	T120I	aCa	aTa	1	1	B.1.240	0.000216
ORF7a	120	T120I	aCa	aTa	1	1	B.1.241	0.000812
ORF7a	120	T120T	acA	acG	1	1	B.1.243	0.00007
ORF7a	120	T120del	ACA	---	1	1	B.1.258.11	0.000396
ORF7a	120	T120I	aCa	aTa	1	1	B.1.258.7	0.001912
ORF7a	120	T120del	ACA	---	1	1	B.1.265	0.001271
ORF7a	120	T120I	aCa	aTa	1	1	B.1.301	0.005917
ORF7a	120	T120I	aCa	aTa	1	1	B.1.324	0.001605
ORF7a	120	T120T	acA	acC	1	1	B.1.351	0.00003
ORF7a	120	T120K	aCa	aAa	1	1	B.1.351	0.00003
ORF7a	120	T120I	aCa	aTa	1	1	B.1.351.2	0.000303
ORF7a	120	T120del	ACA	---	1	1	B.1.351.3	0.000876
ORF7a	120	T120I	aCa	aTa	1	1	B.1.351.5	0.0006
ORF7a	120	T120del	ACA	---	1	1	B.1.36.16	0.001425
ORF7a	120	T120I	aCa	aTa	1	1	B.1.36.18	0.00042
ORF7a	120	T120R	aCa	aGa	1	1	B.1.36.29	0.000517
ORF7a	120	T120I	aCa	aTa	1	1	B.1.36.29	0.000517
ORF7a	120	T120del	ACA	---	1	1	B.1.36.31	0.001751
ORF7a	120	T120I	aCa	aTa	1	1	B.1.36.8	0.001
ORF7a	120	T120I	aCa	aTa	1	1	B.1.361	0.001289
ORF7a	120	T120del	ACA	---	1	1	B.1.362	0.001541
ORF7a	120	T120I	aCa	aTa	1	1	B.1.362	0.001541
ORF7a	120	T120I	aCa	aTa	1	1	B.1.366	0.004878
ORF7a	120	T120del	ACA	---	1	1	B.1.369	0.000285
ORF7a	120	T120I	aCa	aTa	1	1	B.1.370	0.008
ORF7a	120	T120del	ACA	---	1	1	B.1.375	0.00082
ORF7a	120	T120I	aCa	aTa	1	1	B.1.380	0.006623
ORF7a	120	T120I	aCa	aTa	1	1	B.1.381	0.007812
ORF7a	120	T120T	acA	acG	1	1	B.1.391	0.001127
ORF7a	120	T120I	aCa	aTa	1	1	B.1.405	0.012346
ORF7a	120	T120del	ACA	---	1	1	B.1.413	0.004255
ORF7a	120	T120I	aCa	aTa	1	1	B.1.426	0.001009
ORF7a	120	T120K	aCa	aAa	1	1	B.1.429	0.000024
ORF7a	120	T120I	aCa	aTa	1	1	B.1.432	0.011236
ORF7a	120	T120I	aCa	aTa	1	1	B.1.433	0.003195
ORF7a	120	T120I	aCa	aTa	1	1	B.1.452	0.013699
ORF7a	120	T120del	ACA	---	1	1	B.1.459	0.004082
ORF7a	120	T120I	aCa	aTa	1	1	B.1.462	0.007246
ORF7a	120	T120A	Aca	Gca	1	1	B.1.466.2	0.000391
ORF7a	120	T120del	ACA	---	1	1	B.1.468	0.005714
ORF7a	120	T120I	aCa	aTa	1	1	B.1.470	0.001404
ORF7a	120	T120I	aCa	aTa	1	1	B.1.474	0.001901
ORF7a	120	T120I	aCa	aTa	1	1	B.1.497	0.000315
ORF7a	120	T120I	aCa	aTa	1	1	B.1.508	0.025641
ORF7a	120	T120del	ACA	---	1	1	B.1.517	0.000427
ORF7a	120	T120I	aCa	aTa	1	1	B.1.517	0.000427
ORF7a	120	T120I	aCa	aTa	1	1	B.1.523	0.002451
ORF7a	120	T120I	aCa	aTa	1	1	B.1.524	0.001406
ORF7a	120	T120del	ACA	---	1	1	B.1.527	0.003704
ORF7a	120	T120I	aCa	aTa	1	1	B.1.533	0.009615
ORF7a	120	T120I	aCa	aTa	1	1	B.1.551	0.00129
ORF7a	120	T120I	aCa	aTa	1	1	B.1.561	0.000397
ORF7a	120	T120I	aCa	aTa	1	1	B.1.564	0.000426
ORF7a	120	T120I	aCa	aTa	1	1	B.1.574	0.002151
ORF7a	120	T120T	acA	acT	1	1	B.1.575	0.000303
ORF7a	120	T120I	aCa	aTa	1	1	B.1.577	0.000687
ORF7a	120	T120I	aCa	aTa	1	1	B.1.582	0.000491
ORF7a	120	T120I	aCa	aTa	1	1	B.1.594	0.03125
ORF7a	120	T120T	acA	acG	1	1	B.1.596	0.000087
ORF7a	120	T120S	Aca	Tca	1	1	B.1.617.1	0.000129
ORF7a	120	T120R	aCa	aGa	1	1	B.1.617.1	0.000129
ORF7a	120	T120M	aCA	aTG	1	1	B.1.617.1	0.000129
ORF7a	120	T120K	aCa	aAa	1	1	B.1.617.2	0.000004
ORF7a	120	T120R	aCa	aGa	1	1	B.1.617.2	0.000004
ORF7a	120	T120A	Aca	Gca	1	1	B.1.617.2	0.000004
ORF7a	120	T120Y	ACA	TAT	1	1	B.1.617.2	0.000004
ORF7a	120	T120del1	acA	ac-	1	1	B.1.619	0.000871
ORF7a	120	T120T	acA	acT	1	1	B.1.621	0.000089
ORF7a	120	T120A	Aca	Gca	1	1	B.1.621	0.000089
ORF7a	120	T120I	aCa	aTa	1	1	B.1.627	0.00202
ORF7a	120	T120S	Aca	Tca	1	1	B.1.628	0.000352
ORF7a	120	T120del	ACA	---	1	1	B.1.630	0.005236
ORF7a	120	T120T	acA	acT	1	1	B.1.631	0.003367
ORF7a	120	T120I	aCa	aTa	1	1	B.1.9.4	0.006135
ORF7a	120	T120del	ACA	---	1	1	B.12	0.00641
ORF7a	120	T120I	aCa	aTa	1	1	B.12	0.00641
ORF7a	120	T120I	aCa	aTa	1	1	B.55	0.00295
ORF7a	120	T120I	aCa	aTa	1	1	B.6.6	0.000889
ORF7a	120	T120I	aCa	aTa	1	1	C.1.2	0.004255
ORF7a	120	T120I	aCa	aTa	1	1	C.16	0.00106
ORF7a	120	T120del	ACA	---	1	1	C.30	0.001727
ORF7a	120	T120del2	ACa	--a	1	1	C.37	0.000116
ORF7a	120	T120del	ACA	---	1	1	C.37.1	0.002618
ORF7a	120	T120del	ACA	---	1	1	D.2	0.000075
ORF7a	120	T120I	aCa	aTa	1	1	N.1	0.016949
ORF7a	120	T120del	ACA	---	1	1	N.5	0.001767
ORF7a	120	T120I	aCa	aTa	1	1	N.5	0.001767
ORF7a	120	T120A	Aca	Gca	1	1	P.1	0.000016
ORF7a	120	T120F	ACA	TTC	1	1	P.1	0.000016
ORF7a	120	T120E	ACa	GAa	1	1	P.1	0.000016
ORF7a	120	T120del	ACA	---	1	1	P.1.1	0.000318
ORF7a	120	T120del	ACA	---	1	1	P.1.12	0.000484
ORF7a	120	T120T	acA	acT	1	1	P.1.15	0.000232
ORF7a	120	T120del	ACA	---	1	1	P.1.16	0.000374
ORF7a	120	T120del	ACA	---	1	1	P.1.17	0.000162
ORF7a	120	T120I	aCa	aTa	1	1	P.1.2	0.001156
ORF7a	120	T120T	acA	acC	1	1	P.1.7	0.000319
ORF7a	120	T120del	ACA	---	1	1	P.1.7	0.000319
ORF7a	120	T120I	aCa	aTa	1	1	P.1.8	0.004785
ORF7a	120	T120del1	ACA	-NN	1	1	P.2	0.000187
ORF7a	120	T120I	aCa	aTa	1	1	Q.3	0.000145
ORF7a	120	T120del1	Aca	-ca	1	1	Q.8	0.000165
ORF7a	120	T120del	ACA	---	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.