CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 120 | T120I | nonsyn | aCa | aTa | 2638714 | 2638678 | 0.999986 | 27751-27753 | |
ORF7a | 120 | T120I | nonsyn | aCA | aTT | 2638714 | 33 | 0.0000125061 | 27751-27753 | |
ORF7a | 120 | T120I | nonsyn | aCA | aTC | 2638714 | 3 | 0.00000113692 | 27751-27753 | |
ORF7a | 120 | T120del | del | ACA | --- | 2443 | 2443 | 1 | 27751-27753 | |
ORF7a | 120 | T120V | nonsyn | ACa | GTa | 547 | 546 | 0.998172 | 27751-27753 | |
ORF7a | 120 | T120V | nonsyn | ACA | GTT | 547 | 1 | 0.00182815 | 27751-27753 | |
ORF7a | 120 | T120M | nonsyn | aCA | aTG | 311 | 311 | 1 | 27751-27753 | |
ORF7a | 120 | T120T | syn | acA | acG | 207 | 110 | 0.531401 | 27751-27753 | |
ORF7a | 120 | T120T | syn | acA | acT | 207 | 62 | 0.299517 | 27751-27753 | |
ORF7a | 120 | T120T | syn | acA | acC | 207 | 35 | 0.169082 | 27751-27753 | |
ORF7a | 120 | T120L | nonsyn | ACa | CTa | 53 | 29 | 0.54717 | 27751-27753 | |
ORF7a | 120 | T120L | nonsyn | ACa | TTa | 53 | 22 | 0.415094 | 27751-27753 | |
ORF7a | 120 | T120L | nonsyn | ACA | CTT | 53 | 2 | 0.0377358 | 27751-27753 | |
ORF7a | 120 | T120S | nonsyn | Aca | Tca | 48 | 46 | 0.958333 | 27751-27753 | |
ORF7a | 120 | T120S | nonsyn | aCA | aGC | 48 | 2 | 0.0416667 | 27751-27753 | |
ORF7a | 120 | T120del2 | del | ACa | --a | 46 | 35 | 0.76087 | 27751-27753 | |
ORF7a | 120 | T120del2 | del | aCA | a-- | 46 | 11 | 0.23913 | 27751-27753 | |
ORF7a | 120 | T120R | nonsyn | aCa | aGa | 45 | 44 | 0.977778 | 27751-27753 | |
ORF7a | 120 | T120R | nonsyn | ACa | CGa | 45 | 1 | 0.0222222 | 27751-27753 | |
ORF7a | 120 | T120P | nonsyn | Aca | Cca | 42 | 39 | 0.928571 | 27751-27753 | |
ORF7a | 120 | T120P | nonsyn | AcA | CcT | 42 | 2 | 0.047619 | 27751-27753 | |
ORF7a | 120 | T120P | nonsyn | AcA | CcG | 42 | 1 | 0.0238095 | 27751-27753 | |
ORF7a | 120 | T120A | nonsyn | Aca | Gca | 34 | 33 | 0.970588 | 27751-27753 | |
ORF7a | 120 | T120A | nonsyn | AcA | GcG | 34 | 1 | 0.0294118 | 27751-27753 | |
ORF7a | 120 | T120K | nonsyn | aCa | aAa | 33 | 31 | 0.939394 | 27751-27753 | |
ORF7a | 120 | T120K | nonsyn | aCA | aAG | 33 | 2 | 0.0606061 | 27751-27753 | |
ORF7a | 120 | T120del1 | del | aCa | a-a | 30 | 12 | 0.4 | 27751-27753 | |
ORF7a | 120 | T120del1 | del | Aca | -ca | 30 | 10 | 0.333333 | 27751-27753 | |
ORF7a | 120 | T120del1 | del | acA | ac- | 30 | 5 | 0.166667 | 27751-27753 | |
ORF7a | 120 | T120del1 | del | ACa | -Na | 30 | 2 | 0.0666667 | 27751-27753 | |
ORF7a | 120 | T120del1 | del | ACA | -NN | 30 | 1 | 0.0333333 | 27751-27753 | |
ORF7a | 120 | T120F | nonsyn | ACA | TTC | 7 | 7 | 1 | 27751-27753 | |
ORF7a | 120 | T120X | nonsyn | ACa | TAa | 2 | 1 | 0.5 | 27751-27753 | |
ORF7a | 120 | T120X | nonsyn | ACa | TGa | 2 | 1 | 0.5 | 27751-27753 | |
ORF7a | 120 | T120Q | nonsyn | ACa | CAa | 1 | 1 | 1 | 27751-27753 | |
ORF7a | 120 | T120N | nonsyn | aCA | aAC | 1 | 1 | 1 | 27751-27753 | |
ORF7a | 120 | T120E | nonsyn | ACa | GAa | 1 | 1 | 1 | 27751-27753 | |
ORF7a | 120 | T120Y | nonsyn | ACA | TAT | 1 | 1 | 1 | 27751-27753 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 120 | T120I | aCa | aTa | 2638678 | 2638714 | All | 0.504678 |
ORF7a | 120 | T120I | aCA | aTT | 33 | 2638714 | All | 0.000006 |
ORF7a | 120 | T120I | aCA | aTC | 3 | 2638714 | All | 0.000001 |
ORF7a | 120 | T120I | aCa | aTa | 627664 | 627668 | AY.4 | 0.97691 |
ORF7a | 120 | T120I | aCA | aTT | 4 | 627668 | AY.4 | 0.000006 |
ORF7a | 120 | T120I | aCa | aTa | 256420 | 256424 | B.1.617.2 | 0.965528 |
ORF7a | 120 | T120I | aCA | aTC | 2 | 256424 | B.1.617.2 | 0.000008 |
ORF7a | 120 | T120I | aCA | aTT | 2 | 256424 | B.1.617.2 | 0.000008 |
ORF7a | 120 | T120I | aCa | aTa | 217667 | 217667 | AY.43 | 0.964366 |
ORF7a | 120 | T120I | aCa | aTa | 158771 | 158771 | AY.25 | 0.954979 |
ORF7a | 120 | T120I | aCa | aTa | 153048 | 153048 | AY.103 | 0.950284 |
ORF7a | 120 | T120I | aCa | aTa | 152515 | 152521 | AY.44 | 0.928322 |
ORF7a | 120 | T120I | aCA | aTT | 5 | 152521 | AY.44 | 0.00003 |
ORF7a | 120 | T120I | aCA | aTC | 1 | 152521 | AY.44 | 0.000006 |
ORF7a | 120 | T120I | aCa | aTa | 95541 | 95541 | AY.3 | 0.950288 |
ORF7a | 120 | T120I | aCa | aTa | 63321 | 63321 | AY.29 | 0.998801 |
ORF7a | 120 | T120I | aCa | aTa | 45816 | 45816 | AY.5 | 0.946064 |
ORF7a | 120 | T120I | aCa | aTa | 45787 | 45787 | AY.4.2 | 0.99306 |
ORF7a | 120 | T120I | aCa | aTa | 37231 | 37231 | AY.102 | 0.987141 |
ORF7a | 120 | T120I | aCa | aTa | 33685 | 33686 | AY.26 | 0.953628 |
ORF7a | 120 | T120I | aCA | aTT | 1 | 33686 | AY.26 | 0.000028 |
ORF7a | 120 | T120I | aCa | aTa | 30649 | 30649 | AY.47 | 0.953342 |
ORF7a | 120 | T120I | aCa | aTa | 29048 | 29051 | AY.39 | 0.717819 |
ORF7a | 120 | T120I | aCA | aTT | 3 | 29051 | AY.39 | 0.000074 |
ORF7a | 120 | T120I | aCa | aTa | 26809 | 26809 | AY.119 | 0.946579 |
ORF7a | 120 | T120I | aCa | aTa | 26137 | 26137 | AY.9.2 | 0.960001 |
ORF7a | 120 | T120I | aCa | aTa | 26030 | 26030 | AY.120 | 0.967766 |
ORF7a | 120 | T120I | aCa | aTa | 24683 | 24683 | AY.39.1 | 0.977777 |
ORF7a | 120 | T120I | aCa | aTa | 24510 | 24510 | AY.20 | 0.952585 |
ORF7a | 120 | T120I | aCa | aTa | 23631 | 23631 | AY.6 | 0.971909 |
ORF7a | 120 | T120I | aCa | aTa | 23372 | 23372 | AY.42 | 0.940258 |
ORF7a | 120 | T120I | aCa | aTa | 19852 | 19852 | AY.98.1 | 0.961449 |
ORF7a | 120 | T120I | aCa | aTa | 19534 | 19534 | AY.100 | 0.898693 |
ORF7a | 120 | T120I | aCa | aTa | 16470 | 16470 | AY.75 | 0.922689 |
ORF7a | 120 | T120I | aCa | aTa | 15241 | 15241 | AY.118 | 0.95483 |
ORF7a | 120 | T120I | aCa | aTa | 14557 | 14557 | AY.27 | 0.94214 |
ORF7a | 120 | T120I | aCa | aTa | 14196 | 14196 | AY.9 | 0.959578 |
ORF7a | 120 | T120I | aCa | aTa | 13954 | 13954 | AY.33 | 0.93182 |
ORF7a | 120 | T120I | aCa | aTa | 13243 | 13243 | AY.46.6 | 0.956242 |
ORF7a | 120 | T120I | aCa | aTa | 12796 | 12796 | AY.23 | 0.892516 |
ORF7a | 120 | T120I | aCa | aTa | 11973 | 11973 | AY.98 | 0.945809 |
ORF7a | 120 | T120I | aCa | aTa | 11670 | 11670 | AY.9.1 | 0.97706 |
ORF7a | 120 | T120I | aCa | aTa | 11187 | 11187 | AY.3.1 | 0.95379 |
ORF7a | 120 | T120I | aCa | aTa | 11114 | 11114 | AY.117 | 0.939317 |
ORF7a | 120 | T120I | aCa | aTa | 10896 | 10896 | AY.14 | 0.958986 |
ORF7a | 120 | T120I | aCa | aTa | 10385 | 10385 | AY.99.2 | 0.957055 |
ORF7a | 120 | T120I | aCa | aTa | 9997 | 9997 | AY.34 | 0.969359 |
ORF7a | 120 | T120I | aCa | aTa | 9823 | 9823 | AY.54 | 0.936594 |
ORF7a | 120 | T120I | aCa | aTa | 9424 | 9424 | AY.61 | 0.987427 |
ORF7a | 120 | T120I | aCa | aTa | 8943 | 8943 | AY.46 | 0.930787 |
ORF7a | 120 | T120I | aCa | aTa | 8714 | 8714 | AY.4.5 | 0.936687 |
ORF7a | 120 | T120I | aCa | aTa | 8697 | 8710 | AY.110 | 0.980054 |
ORF7a | 120 | T120I | aCA | aTT | 13 | 8710 | AY.110 | 0.001465 |
ORF7a | 120 | T120I | aCa | aTa | 8480 | 8480 | AY.74 | 0.980687 |
ORF7a | 120 | T120I | aCa | aTa | 8298 | 8298 | AY.7.1 | 0.935197 |
ORF7a | 120 | T120I | aCa | aTa | 7550 | 7550 | AY.45 | 0.918715 |
ORF7a | 120 | T120I | aCa | aTa | 6889 | 6889 | AY.121 | 0.932206 |
ORF7a | 120 | T120I | aCa | aTa | 6653 | 6653 | AY.113 | 0.947316 |
ORF7a | 120 | T120I | aCa | aTa | 6533 | 6533 | AY.4.2.1 | 0.973331 |
ORF7a | 120 | T120I | aCa | aTa | 6388 | 6388 | AY.36 | 0.946791 |
ORF7a | 120 | T120I | aCa | aTa | 5921 | 5921 | AY.13 | 0.953155 |
ORF7a | 120 | T120I | aCa | aTa | 5898 | 5898 | AY.46.4 | 0.970225 |
ORF7a | 120 | T120I | aCa | aTa | 5344 | 5344 | AY.69 | 0.997573 |
ORF7a | 120 | T120I | aCa | aTa | 5259 | 5259 | AY.111 | 0.963187 |
ORF7a | 120 | T120I | aCa | aTa | 4922 | 4922 | AY.46.5 | 0.976587 |
ORF7a | 120 | T120I | aCa | aTa | 4881 | 4881 | AY.7 | 0.956684 |
ORF7a | 120 | T120I | aCa | aTa | 4678 | 4678 | AY.70 | 0.975396 |
ORF7a | 120 | T120I | aCa | aTa | 4605 | 4605 | AY.75.1 | 0.830328 |
ORF7a | 120 | T120I | aCa | aTa | 4508 | 4508 | AY.29.1 | 0.994046 |
ORF7a | 120 | T120I | aCa | aTa | 4230 | 4230 | AY.35 | 0.985784 |
ORF7a | 120 | T120I | aCa | aTa | 4065 | 4065 | AY.114 | 0.93945 |
ORF7a | 120 | T120I | aCa | aTa | 3604 | 3604 | AY.93 | 0.984162 |
ORF7a | 120 | T120I | aCa | aTa | 3423 | 3423 | AY.5.4 | 0.94715 |
ORF7a | 120 | T120I | aCa | aTa | 3327 | 3327 | AY.116 | 0.954115 |
ORF7a | 120 | T120I | aCa | aTa | 3313 | 3313 | AY.41 | 0.973839 |
ORF7a | 120 | T120I | aCa | aTa | 3264 | 3264 | AY.53 | 0.93847 |
ORF7a | 120 | T120I | aCa | aTa | 3186 | 3186 | AY.68 | 0.87216 |
ORF7a | 120 | T120I | aCa | aTa | 3049 | 3049 | AY.92 | 0.875898 |
ORF7a | 120 | T120I | aCa | aTa | 3003 | 3003 | AY.116.1 | 0.935223 |
ORF7a | 120 | T120I | aCa | aTa | 3001 | 3001 | AY.37 | 0.948483 |
ORF7a | 120 | T120I | aCa | aTa | 2910 | 2910 | AY.120.1 | 0.934189 |
ORF7a | 120 | T120I | aCa | aTa | 2839 | 2839 | AY.106 | 0.95077 |
ORF7a | 120 | T120I | aCa | aTa | 2829 | 2829 | AY.5.3 | 0.954453 |
ORF7a | 120 | T120I | aCa | aTa | 2666 | 2666 | AY.2 | 0.94943 |
ORF7a | 120 | T120I | aCa | aTa | 2575 | 2575 | AY.12 | 0.813843 |
ORF7a | 120 | T120I | aCa | aTa | 2537 | 2537 | AY.63 | 0.981431 |
ORF7a | 120 | T120del | ACA | --- | 2443 | 2443 | All | 0.000467 |
ORF7a | 120 | T120I | aCa | aTa | 2440 | 2440 | AY.1 | 0.965572 |
ORF7a | 120 | T120I | aCa | aTa | 2419 | 2419 | AY.30 | 0.957262 |
ORF7a | 120 | T120I | aCa | aTa | 2401 | 2401 | AY.16 | 0.911541 |
ORF7a | 120 | T120I | aCa | aTa | 2394 | 2394 | AY.23.1 | 0.999165 |
ORF7a | 120 | T120I | aCa | aTa | 2369 | 2369 | AY.4.4 | 0.969313 |
ORF7a | 120 | T120I | aCa | aTa | 2210 | 2210 | AY.24 | 0.952586 |
ORF7a | 120 | T120I | aCa | aTa | 2209 | 2209 | AY.62 | 0.962527 |
ORF7a | 120 | T120I | aCa | aTa | 2185 | 2185 | AY.94 | 0.967242 |
ORF7a | 120 | T120I | aCa | aTa | 2162 | 2162 | AY.85 | 0.923537 |
ORF7a | 120 | T120I | aCa | aTa | 2016 | 2016 | AY.84 | 0.88189 |
ORF7a | 120 | T120I | aCa | aTa | 1997 | 1997 | AY.67 | 0.927112 |
ORF7a | 120 | T120I | aCa | aTa | 1982 | 1982 | AY.107 | 0.923579 |
ORF7a | 120 | T120I | aCa | aTa | 1956 | 1956 | AY.71 | 0.929216 |
ORF7a | 120 | T120I | aCa | aTa | 1928 | 1928 | AY.120.2.1 | 0.960638 |
ORF7a | 120 | T120I | aCa | aTa | 1923 | 1923 | AY.34.1 | 0.980622 |
ORF7a | 120 | T120I | aCa | aTa | 1919 | 1919 | AY.101 | 0.941148 |
ORF7a | 120 | T120I | aCa | aTa | 1887 | 1887 | AY.38 | 0.942087 |
ORF7a | 120 | T120I | aCa | aTa | 1876 | 1877 | B.1.1.7 | 0.001679 |
ORF7a | 120 | T120I | aCA | aTT | 1 | 1877 | B.1.1.7 | 0.000001 |
ORF7a | 120 | T120I | aCa | aTa | 1845 | 1845 | AY.48 | 0.85814 |
ORF7a | 120 | T120I | aCa | aTa | 1795 | 1795 | AY.10 | 0.951245 |
ORF7a | 120 | T120I | aCa | aTa | 1764 | 1764 | AY.59 | 0.934322 |
ORF7a | 120 | T120I | aCa | aTa | 1739 | 1740 | AY.32 | 0.925985 |
ORF7a | 120 | T120I | aCA | aTT | 1 | 1740 | AY.32 | 0.000532 |
ORF7a | 120 | T120I | aCa | aTa | 1689 | 1689 | AY.7.2 | 0.944631 |
ORF7a | 120 | T120I | aCa | aTa | 1627 | 1627 | AY.8 | 0.986061 |
ORF7a | 120 | T120I | aCa | aTa | 1572 | 1572 | AY.64 | 0.935714 |
ORF7a | 120 | T120I | aCa | aTa | 1539 | 1539 | AY.46.2 | 0.977764 |
ORF7a | 120 | T120I | aCa | aTa | 1510 | 1510 | AY.57 | 0.990814 |
ORF7a | 120 | T120I | aCa | aTa | 1482 | 1482 | AY.73 | 0.986028 |
ORF7a | 120 | T120I | aCa | aTa | 1474 | 1474 | AY.105 | 0.94791 |
ORF7a | 120 | T120I | aCa | aTa | 1454 | 1454 | AY.65 | 0.775053 |
ORF7a | 120 | T120I | aCa | aTa | 1430 | 1430 | AY.90 | 0.978782 |
ORF7a | 120 | T120I | aCa | aTa | 1420 | 1420 | B.1.2 | 0.012504 |
ORF7a | 120 | T120I | aCa | aTa | 1345 | 1345 | AY.4.1 | 0.991888 |
ORF7a | 120 | T120I | aCa | aTa | 1310 | 1310 | AY.39.1.1 | 0.949275 |
ORF7a | 120 | T120I | aCa | aTa | 1285 | 1285 | Q.2 | 0.788344 |
ORF7a | 120 | T120I | aCa | aTa | 1282 | 1282 | AY.91 | 0.93645 |
ORF7a | 120 | T120I | aCa | aTa | 1254 | 1254 | AY.109 | 0.927515 |
ORF7a | 120 | T120I | aCa | aTa | 1229 | 1229 | AY.50 | 0.982414 |
ORF7a | 120 | T120I | aCa | aTa | 1177 | 1177 | AY.86 | 0.976763 |
ORF7a | 120 | T120I | aCa | aTa | 1153 | 1153 | AY.4.3 | 0.970539 |
ORF7a | 120 | T120del | ACA | --- | 1151 | 1151 | B.1.1.7 | 0.00103 |
ORF7a | 120 | T120I | aCa | aTa | 1132 | 1132 | AY.87 | 0.942548 |
ORF7a | 120 | T120I | aCa | aTa | 1118 | 1118 | AY.95 | 0.850837 |
ORF7a | 120 | T120I | aCa | aTa | 1052 | 1052 | AY.51 | 0.956364 |
ORF7a | 120 | T120I | aCa | aTa | 1036 | 1036 | AY.46.3 | 0.96732 |
ORF7a | 120 | T120I | aCa | aTa | 1022 | 1022 | AY.60 | 0.958724 |
ORF7a | 120 | T120I | aCa | aTa | 1008 | 1008 | AY.58 | 0.914701 |
ORF7a | 120 | T120I | aCa | aTa | 955 | 955 | AY.55 | 0.876147 |
ORF7a | 120 | T120I | aCa | aTa | 933 | 933 | AY.88 | 0.824934 |
ORF7a | 120 | T120I | aCa | aTa | 891 | 891 | AY.46.1 | 0.914784 |
ORF7a | 120 | T120I | aCa | aTa | 878 | 878 | AY.108 | 0.968026 |
ORF7a | 120 | T120I | aCa | aTa | 847 | 847 | AY.52 | 0.689739 |
ORF7a | 120 | T120I | aCa | aTa | 846 | 846 | AY.80 | 0.954853 |
ORF7a | 120 | T120I | aCa | aTa | 844 | 844 | AY.99 | 0.885624 |
ORF7a | 120 | T120I | aCa | aTa | 838 | 838 | AY.40 | 0.8081 |
ORF7a | 120 | T120I | aCa | aTa | 823 | 823 | AY.77 | 0.927847 |
ORF7a | 120 | T120I | aCa | aTa | 809 | 809 | AY.66 | 0.865241 |
ORF7a | 120 | T120I | aCa | aTa | 807 | 807 | AY.79 | 0.976998 |
ORF7a | 120 | T120I | aCa | aTa | 759 | 759 | B.1.177.18 | 0.88051 |
ORF7a | 120 | T120I | aCa | aTa | 755 | 755 | AY.19 | 0.860889 |
ORF7a | 120 | T120I | aCa | aTa | 731 | 731 | AY.11 | 0.978581 |
ORF7a | 120 | T120I | aCa | aTa | 721 | 721 | B.1 | 0.006604 |
ORF7a | 120 | T120I | aCa | aTa | 719 | 719 | AY.72 | 0.978231 |
ORF7a | 120 | T120I | aCa | aTa | 710 | 710 | AY.120.2 | 0.912596 |
ORF7a | 120 | T120I | aCa | aTa | 656 | 656 | AY.82 | 0.890095 |
ORF7a | 120 | T120I | aCa | aTa | 643 | 643 | AY.39.2 | 0.990755 |
ORF7a | 120 | T120I | aCa | aTa | 630 | 630 | AY.99.1 | 0.978261 |
ORF7a | 120 | T120I | aCa | aTa | 628 | 628 | AY.78 | 0.967643 |
ORF7a | 120 | T120I | aCa | aTa | 624 | 624 | AY.16.1 | 0.293233 |
ORF7a | 120 | T120I | aCa | aTa | 580 | 580 | AY.56 | 0.930979 |
ORF7a | 120 | T120I | aCa | aTa | 562 | 562 | AY.97 | 0.955782 |
ORF7a | 120 | T120V | ACa | GTa | 546 | 547 | All | 0.000104 |
ORF7a | 120 | T120V | ACA | GTT | 1 | 547 | All | 0 |
ORF7a | 120 | T120I | aCa | aTa | 525 | 525 | AY.28 | 0.992439 |
ORF7a | 120 | T120I | aCa | aTa | 505 | 505 | AY.9.2.1 | 0.998024 |
ORF7a | 120 | T120I | aCa | aTa | 503 | 503 | AY.21 | 0.954459 |
ORF7a | 120 | T120I | aCa | aTa | 466 | 466 | AY.83 | 0.803448 |
ORF7a | 120 | T120I | aCa | aTa | 465 | 465 | AY.22 | 0.972803 |
ORF7a | 120 | T120I | aCa | aTa | 464 | 464 | AY.81 | 0.924303 |
ORF7a | 120 | T120I | aCa | aTa | 445 | 445 | AY.15 | 0.988889 |
ORF7a | 120 | T120I | aCa | aTa | 434 | 434 | AY.104 | 0.861111 |
ORF7a | 120 | T120V | ACa | GTa | 412 | 412 | AY.39 | 0.010181 |
ORF7a | 120 | T120I | aCa | aTa | 389 | 389 | AY.5.2 | 0.958128 |
ORF7a | 120 | T120I | aCa | aTa | 338 | 338 | B.1.177 | 0.004451 |
ORF7a | 120 | T120M | aCA | aTG | 311 | 311 | All | 0.000059 |
ORF7a | 120 | T120I | aCa | aTa | 297 | 297 | AY.96 | 0.616183 |
ORF7a | 120 | T120del | ACA | --- | 265 | 265 | AY.4 | 0.000412 |
ORF7a | 120 | T120I | aCa | aTa | 254 | 254 | AY.5.1 | 0.954887 |
ORF7a | 120 | T120I | aCa | aTa | 249 | 249 | AY.49 | 0.795527 |
ORF7a | 120 | T120I | aCa | aTa | 238 | 238 | AY.91.1 | 0.96748 |
ORF7a | 120 | T120T | acA | acG | 110 | 207 | All | 0.000021 |
ORF7a | 120 | T120T | acA | acT | 62 | 207 | All | 0.000012 |
ORF7a | 120 | T120T | acA | acC | 35 | 207 | All | 0.000007 |
ORF7a | 120 | T120I | aCa | aTa | 203 | 203 | AY.76 | 0.980676 |
ORF7a | 120 | T120I | aCa | aTa | 195 | 195 | AY.89 | 0.955882 |
ORF7a | 120 | T120I | aCa | aTa | 134 | 134 | AY.115 | 0.697917 |
ORF7a | 120 | T120M | aCA | aTG | 131 | 131 | B.1.617.2 | 0.000493 |
ORF7a | 120 | T120I | aCa | aTa | 112 | 112 | AY.17 | 0.918033 |
ORF7a | 120 | T120M | aCA | aTG | 102 | 102 | AY.102 | 0.002704 |
ORF7a | 120 | T120T | acA | acG | 76 | 102 | B.1.1.7 | 0.000068 |
ORF7a | 120 | T120T | acA | acT | 23 | 102 | B.1.1.7 | 0.000021 |
ORF7a | 120 | T120T | acA | acC | 3 | 102 | B.1.1.7 | 0.000003 |
ORF7a | 120 | T120I | aCa | aTa | 99 | 99 | AY.18 | 1 |
ORF7a | 120 | T120I | aCa | aTa | 95 | 95 | B.1.177.81 | 0.017986 |
ORF7a | 120 | T120del | ACA | --- | 93 | 93 | AY.33 | 0.00621 |
ORF7a | 120 | T120I | aCa | aTa | 85 | 86 | B.1.1 | 0.001542 |
ORF7a | 120 | T120I | aCA | aTT | 1 | 86 | B.1.1 | 0.000018 |
ORF7a | 120 | T120I | aCa | aTa | 80 | 80 | B.1.177.86 | 0.014676 |
ORF7a | 120 | T120del | ACA | --- | 74 | 74 | AY.25 | 0.000445 |
ORF7a | 120 | T120del | ACA | --- | 69 | 69 | AY.46 | 0.007182 |
ORF7a | 120 | T120I | aCa | aTa | 59 | 59 | P.1 | 0.000929 |
ORF7a | 120 | T120L | ACa | CTa | 29 | 53 | All | 0.000006 |
ORF7a | 120 | T120L | ACa | TTa | 22 | 53 | All | 0.000004 |
ORF7a | 120 | T120L | ACA | CTT | 2 | 53 | All | 0 |
ORF7a | 120 | T120I | aCa | aTa | 53 | 53 | AY.31 | 0.981481 |
ORF7a | 120 | T120I | aCa | aTa | 52 | 52 | B.1.160.31 | 0.419355 |
ORF7a | 120 | T120I | aCa | aTa | 52 | 52 | B.1.429 | 0.001224 |
ORF7a | 120 | T120S | Aca | Tca | 46 | 48 | All | 0.000009 |
ORF7a | 120 | T120S | aCA | aGC | 2 | 48 | All | 0 |
ORF7a | 120 | T120del | ACA | --- | 47 | 47 | P.1 | 0.00074 |
ORF7a | 120 | T120del2 | ACa | --a | 35 | 46 | All | 0.000007 |
ORF7a | 120 | T120del2 | aCA | a-- | 11 | 46 | All | 0.000002 |
ORF7a | 120 | T120R | aCa | aGa | 44 | 45 | All | 0.000008 |
ORF7a | 120 | T120R | ACa | CGa | 1 | 45 | All | 0 |
ORF7a | 120 | T120P | Aca | Cca | 39 | 42 | All | 0.000007 |
ORF7a | 120 | T120P | AcA | CcT | 2 | 42 | All | 0 |
ORF7a | 120 | T120P | AcA | CcG | 1 | 42 | All | 0 |
ORF7a | 120 | T120del | ACA | --- | 40 | 40 | B.1.2 | 0.000352 |
ORF7a | 120 | T120I | aCa | aTa | 40 | 40 | B.1.621 | 0.003541 |
ORF7a | 120 | T120V | ACa | GTa | 38 | 38 | B.1.617.2 | 0.000143 |
ORF7a | 120 | T120I | aCa | aTa | 37 | 37 | B.1.351 | 0.0011 |
ORF7a | 120 | T120del | ACA | --- | 37 | 37 | B.1.617.2 | 0.000139 |
ORF7a | 120 | T120I | aCa | aTa | 36 | 36 | B.1.177.11 | 0.061121 |
ORF7a | 120 | T120del | ACA | --- | 35 | 35 | AY.103 | 0.000217 |
ORF7a | 120 | T120I | aCa | aTa | 35 | 35 | B.1.221 | 0.002486 |
ORF7a | 120 | T120A | Aca | Gca | 33 | 34 | All | 0.000006 |
ORF7a | 120 | T120A | AcA | GcG | 1 | 34 | All | 0 |
ORF7a | 120 | T120I | aCa | aTa | 34 | 34 | B.1.1.377 | 0.046961 |
ORF7a | 120 | T120K | aCa | aAa | 31 | 33 | All | 0.000006 |
ORF7a | 120 | T120K | aCA | aAG | 2 | 33 | All | 0 |
ORF7a | 120 | T120del | ACA | --- | 33 | 33 | AY.74 | 0.003816 |
ORF7a | 120 | T120I | aCa | aTa | 33 | 33 | B.1.1.222 | 0.006732 |
ORF7a | 120 | T120I | aCa | aTa | 33 | 33 | Q.8 | 0.005442 |
ORF7a | 120 | T120del | ACA | --- | 32 | 32 | AY.42 | 0.001287 |
ORF7a | 120 | T120I | aCa | aTa | 31 | 31 | B.1.160 | 0.000967 |
ORF7a | 120 | T120I | aCa | aTa | 31 | 31 | P.1.15 | 0.007203 |
ORF7a | 120 | T120del1 | aCa | a-a | 12 | 30 | All | 0.000002 |
ORF7a | 120 | T120del1 | Aca | -ca | 10 | 30 | All | 0.000002 |
ORF7a | 120 | T120del1 | acA | ac- | 5 | 30 | All | 0.000001 |
ORF7a | 120 | T120del1 | ACa | -Na | 2 | 30 | All | 0 |
ORF7a | 120 | T120del1 | ACA | -NN | 1 | 30 | All | 0 |
ORF7a | 120 | T120I | aCa | aTa | 30 | 30 | B | 0.003834 |
ORF7a | 120 | T120del | ACA | --- | 29 | 29 | AY.43 | 0.000128 |
ORF7a | 120 | T120del | ACA | --- | 28 | 28 | AY.3 | 0.000278 |
ORF7a | 120 | T120R | aCa | aGa | 28 | 28 | P.1 | 0.000441 |
ORF7a | 120 | T120del | ACA | --- | 27 | 27 | AY.29 | 0.000426 |
ORF7a | 120 | T120V | ACa | GTa | 26 | 26 | AY.103 | 0.000161 |
ORF7a | 120 | T120I | aCa | aTa | 26 | 26 | B.1.214 | 0.095238 |
ORF7a | 120 | T120I | aCa | aTa | 26 | 26 | B.1.596 | 0.002266 |
ORF7a | 120 | T120I | aCa | aTa | 24 | 24 | B.1.617.1 | 0.003095 |
ORF7a | 120 | T120I | aCa | aTa | 24 | 24 | C.37 | 0.002786 |
ORF7a | 120 | T120S | Aca | Tca | 23 | 23 | B.1.1 | 0.000417 |
ORF7a | 120 | T120del | ACA | --- | 22 | 22 | AY.26 | 0.000623 |
ORF7a | 120 | T120I | aCa | aTa | 22 | 22 | B.1.177.60 | 0.004806 |
ORF7a | 120 | T120T | acA | acC | 22 | 22 | B.1.237 | 0.109453 |
ORF7a | 120 | T120del | ACA | --- | 21 | 21 | AY.53 | 0.006038 |
ORF7a | 120 | T120I | aCa | aTa | 21 | 21 | B.1.1.519 | 0.000834 |
ORF7a | 120 | T120I | aCa | aTa | 20 | 20 | B.1.1.33 | 0.008418 |
ORF7a | 120 | T120I | aCa | aTa | 19 | 19 | B.1.525 | 0.00215 |
ORF7a | 120 | T120del | ACA | --- | 18 | 18 | B.1.1 | 0.000327 |
ORF7a | 120 | T120del | ACA | --- | 18 | 18 | C.37 | 0.002089 |
ORF7a | 120 | T120del | ACA | --- | 17 | 17 | AY.39 | 0.00042 |
ORF7a | 120 | T120del | ACA | --- | 16 | 16 | AY.44 | 0.000097 |
ORF7a | 120 | T120I | aCa | aTa | 16 | 16 | B.1.1.58 | 0.086022 |
ORF7a | 120 | T120V | ACa | GTa | 15 | 15 | AY.5 | 0.00031 |
ORF7a | 120 | T120del | ACA | --- | 15 | 15 | B.1.427 | 0.000757 |
ORF7a | 120 | T120del | ACA | --- | 14 | 14 | B.1.1.37 | 0.0027 |
ORF7a | 120 | T120I | aCa | aTa | 14 | 14 | B.1.177.82 | 0.006683 |
ORF7a | 120 | T120T | acA | acT | 13 | 14 | B.1.258 | 0.000865 |
ORF7a | 120 | T120T | acA | acG | 1 | 14 | B.1.258 | 0.000067 |
ORF7a | 120 | T120I | aCa | aTa | 14 | 14 | B.1.258.17 | 0.001456 |
ORF7a | 120 | T120I | aCa | aTa | 14 | 14 | B.1.595 | 0.003653 |
ORF7a | 120 | T120M | aCA | aTG | 13 | 13 | AY.4 | 0.00002 |
ORF7a | 120 | T120del | ACA | --- | 13 | 13 | B.1 | 0.000119 |
ORF7a | 120 | T120I | aCa | aTa | 13 | 13 | B.1.1.63 | 0.005015 |
ORF7a | 120 | T120K | aCa | aAa | 13 | 13 | B.1.1.7 | 0.000012 |
ORF7a | 120 | T120I | aCa | aTa | 13 | 13 | B.1.258 | 0.000865 |
ORF7a | 120 | T120I | aCa | aTa | 13 | 13 | P.1.12 | 0.006292 |
ORF7a | 120 | T120del | ACA | --- | 12 | 12 | B.1.177 | 0.000158 |
ORF7a | 120 | T120A | Aca | Gca | 12 | 12 | B.1.221 | 0.000852 |
ORF7a | 120 | T120I | aCa | aTa | 12 | 12 | B.1.36 | 0.001751 |
ORF7a | 120 | T120I | aCa | aTa | 12 | 12 | P.1.17 | 0.001941 |
ORF7a | 120 | T120P | Aca | Cca | 11 | 11 | AY.3 | 0.000109 |
ORF7a | 120 | T120S | Aca | Tca | 11 | 11 | B.1.1.7 | 0.00001 |
ORF7a | 120 | T120I | aCa | aTa | 11 | 11 | B.1.526 | 0.000259 |
ORF7a | 120 | T120del | ACA | --- | 11 | 11 | Q.8 | 0.001814 |
ORF7a | 120 | T120del | ACA | --- | 10 | 10 | AY.120 | 0.000372 |
ORF7a | 120 | T120del2 | ACa | --a | 10 | 10 | AY.29 | 0.000158 |
ORF7a | 120 | T120M | aCA | aTG | 10 | 10 | AY.43 | 0.000044 |
ORF7a | 120 | T120I | aCa | aTa | 10 | 10 | B.1.1.141 | 0.020121 |
ORF7a | 120 | T120P | Aca | Cca | 10 | 10 | B.1.177.81 | 0.001893 |
ORF7a | 120 | T120del | ACA | --- | 10 | 10 | B.1.234 | 0.001319 |
ORF7a | 120 | T120I | aCa | aTa | 10 | 10 | B.1.243 | 0.000696 |
ORF7a | 120 | T120del | ACA | --- | 10 | 10 | B.1.429 | 0.000235 |
ORF7a | 120 | T120I | aCa | aTa | 10 | 10 | B.1.628 | 0.003524 |
ORF7a | 120 | T120del | ACA | --- | 9 | 9 | AY.113 | 0.001282 |
ORF7a | 120 | T120L | ACa | CTa | 9 | 9 | AY.116.1 | 0.002803 |
ORF7a | 120 | T120del | ACA | --- | 9 | 9 | AY.6 | 0.00037 |
ORF7a | 120 | T120del | ACA | --- | 9 | 9 | B.1.1.214 | 0.000499 |
ORF7a | 120 | T120del | ACA | --- | 9 | 9 | B.1.1.519 | 0.000357 |
ORF7a | 120 | T120I | aCa | aTa | 9 | 9 | B.1.36.16 | 0.012821 |
ORF7a | 120 | T120I | aCa | aTa | 9 | 9 | B.1.427 | 0.000454 |
ORF7a | 120 | T120I | aCa | aTa | 9 | 9 | D.2 | 0.000675 |
ORF7a | 120 | T120I | aCa | aTa | 9 | 9 | Q.1 | 0.001137 |
ORF7a | 120 | T120del | ACA | --- | 8 | 8 | AY.102 | 0.000212 |
ORF7a | 120 | T120V | ACa | GTa | 8 | 8 | AY.119 | 0.000282 |
ORF7a | 120 | T120V | ACa | GTa | 8 | 8 | AY.43 | 0.000035 |
ORF7a | 120 | T120del | ACA | --- | 8 | 8 | AY.91 | 0.005844 |
ORF7a | 120 | T120T | acA | acG | 4 | 8 | B.1 | 0.000037 |
ORF7a | 120 | T120T | acA | acT | 2 | 8 | B.1 | 0.000018 |
ORF7a | 120 | T120T | acA | acC | 2 | 8 | B.1 | 0.000018 |
ORF7a | 120 | T120T | acA | acG | 5 | 8 | B.1.2 | 0.000044 |
ORF7a | 120 | T120T | acA | acC | 2 | 8 | B.1.2 | 0.000018 |
ORF7a | 120 | T120T | acA | acT | 1 | 8 | B.1.2 | 0.000009 |
ORF7a | 120 | T120I | aCa | aTa | 8 | 8 | B.1.234 | 0.001056 |
ORF7a | 120 | T120L | ACa | TTa | 7 | 8 | B.1.617.2 | 0.000026 |
ORF7a | 120 | T120L | ACa | CTa | 1 | 8 | B.1.617.2 | 0.000004 |
ORF7a | 120 | T120I | aCa | aTa | 8 | 8 | B.1.619.1 | 0.005131 |
ORF7a | 120 | T120F | ACA | TTC | 7 | 7 | All | 0.000001 |
ORF7a | 120 | T120I | aCa | aTa | 7 | 7 | AU.2 | 0.016949 |
ORF7a | 120 | T120L | ACa | CTa | 6 | 7 | AY.4 | 0.000009 |
ORF7a | 120 | T120L | ACa | TTa | 1 | 7 | AY.4 | 0.000002 |
ORF7a | 120 | T120del2 | ACa | --a | 7 | 7 | AY.44 | 0.000043 |
ORF7a | 120 | T120V | ACa | GTa | 7 | 7 | AY.46.6 | 0.000505 |
ORF7a | 120 | T120del | ACA | --- | 7 | 7 | AY.5 | 0.000145 |
ORF7a | 120 | T120M | aCA | aTG | 7 | 7 | AY.84 | 0.003062 |
ORF7a | 120 | T120I | aCa | aTa | 7 | 7 | B.1.1.433 | 0.009972 |
ORF7a | 120 | T120A | Aca | Gca | 7 | 7 | B.1.1.7 | 0.000006 |
ORF7a | 120 | T120del1 | Aca | -ca | 5 | 7 | B.1.1.7 | 0.000004 |
ORF7a | 120 | T120del1 | acA | ac- | 2 | 7 | B.1.1.7 | 0.000002 |
ORF7a | 120 | T120del | ACA | --- | 7 | 7 | B.1.258.17 | 0.000728 |
ORF7a | 120 | T120I | aCa | aTa | 7 | 7 | B.1.258.21 | 0.054264 |
ORF7a | 120 | T120I | aCa | aTa | 7 | 7 | B.1.466.2 | 0.002739 |
ORF7a | 120 | T120M | aCA | aTG | 6 | 6 | AY.103 | 0.000037 |
ORF7a | 120 | T120V | ACa | GTa | 6 | 6 | AY.4 | 0.000009 |
ORF7a | 120 | T120M | aCA | aTG | 6 | 6 | AY.46 | 0.000624 |
ORF7a | 120 | T120I | aCa | aTa | 6 | 6 | B.1.1.306 | 0.00263 |
ORF7a | 120 | T120F | ACA | TTC | 6 | 6 | B.1.1.7 | 0.000005 |
ORF7a | 120 | T120del2 | ACa | --a | 3 | 6 | B.1.1.7 | 0.000003 |
ORF7a | 120 | T120del2 | aCA | a-- | 3 | 6 | B.1.1.7 | 0.000003 |
ORF7a | 120 | T120I | aCa | aTa | 6 | 6 | B.1.177.4 | 0.001266 |
ORF7a | 120 | T120del | ACA | --- | 6 | 6 | B.1.526 | 0.000141 |
ORF7a | 120 | T120I | aCa | aTa | 6 | 6 | B.1.609 | 0.002876 |
ORF7a | 120 | T120I | aCa | aTa | 6 | 6 | B.1.637 | 0.000438 |
ORF7a | 120 | T120T | acA | acT | 4 | 5 | 0.222222 | |
ORF7a | 120 | T120I | aCa | aTa | 3 | 5 | 0.166667 | |
ORF7a | 120 | T120I | aCA | aTT | 2 | 5 | 0.111111 | |
ORF7a | 120 | T120T | acA | acC | 1 | 5 | 0.055556 | |
ORF7a | 120 | T120M | aCA | aTG | 5 | 5 | AY.33 | 0.000334 |
ORF7a | 120 | T120del | ACA | --- | 5 | 5 | AY.4.2 | 0.000108 |
ORF7a | 120 | T120M | aCA | aTG | 5 | 5 | AY.75 | 0.00028 |
ORF7a | 120 | T120I | aCa | aTa | 5 | 5 | B.1.1.28 | 0.001556 |
ORF7a | 120 | T120del | ACA | --- | 5 | 5 | B.1.1.318 | 0.001509 |
ORF7a | 120 | T120T | acA | acG | 5 | 5 | B.1.1.440 | 0.058824 |
ORF7a | 120 | T120R | aCa | aGa | 4 | 5 | B.1.1.7 | 0.000004 |
ORF7a | 120 | T120R | ACa | CGa | 1 | 5 | B.1.1.7 | 0.000001 |
ORF7a | 120 | T120I | aCa | aTa | 5 | 5 | B.1.177.69 | 0.007418 |
ORF7a | 120 | T120I | aCa | aTa | 5 | 5 | B.1.177.73 | 0.002831 |
ORF7a | 120 | T120del | ACA | --- | 5 | 5 | B.1.351 | 0.000149 |
ORF7a | 120 | T120I | aCa | aTa | 5 | 5 | B.1.576 | 0.004533 |
ORF7a | 120 | T120T | acA | acG | 5 | 5 | C.37 | 0.00058 |
ORF7a | 120 | T120T | acA | acT | 4 | 5 | D.2 | 0.0003 |
ORF7a | 120 | T120T | acA | acG | 1 | 5 | D.2 | 0.000075 |
ORF7a | 120 | T120P | Aca | Cca | 5 | 5 | P.1 | 0.000079 |
ORF7a | 120 | T120del | ACA | --- | 5 | 5 | P.1.14 | 0.000239 |
ORF7a | 120 | T120del | ACA | --- | 5 | 5 | P.2 | 0.000933 |
ORF7a | 120 | T120L | ACA | CTT | 2 | 4 | 0.111111 | |
ORF7a | 120 | T120P | Aca | Cca | 2 | 4 | 0.111111 | |
ORF7a | 120 | T120L | ACa | CTa | 2 | 4 | 0.111111 | |
ORF7a | 120 | T120P | AcA | CcT | 2 | 4 | 0.111111 | |
ORF7a | 120 | T120I | aCa | aTa | 4 | 4 | A.2.5 | 0.001996 |
ORF7a | 120 | T120L | ACa | TTa | 3 | 4 | AY.102 | 0.00008 |
ORF7a | 120 | T120L | ACa | CTa | 1 | 4 | AY.102 | 0.000027 |
ORF7a | 120 | T120del | ACA | --- | 4 | 4 | AY.114 | 0.000924 |
ORF7a | 120 | T120M | aCA | aTG | 4 | 4 | AY.14 | 0.000352 |
ORF7a | 120 | T120K | aCa | aAa | 3 | 4 | AY.43 | 0.000013 |
ORF7a | 120 | T120K | aCA | aAG | 1 | 4 | AY.43 | 0.000004 |
ORF7a | 120 | T120M | aCA | aTG | 4 | 4 | AY.45 | 0.000487 |
ORF7a | 120 | T120del | ACA | --- | 4 | 4 | AY.79 | 0.004843 |
ORF7a | 120 | T120I | aCa | aTa | 4 | 4 | B.1.1.207 | 0.004728 |
ORF7a | 120 | T120del | ACA | --- | 4 | 4 | B.1.1.284 | 0.00043 |
ORF7a | 120 | T120I | aCa | aTa | 4 | 4 | B.1.1.284 | 0.00043 |
ORF7a | 120 | T120I | aCa | aTa | 4 | 4 | B.1.1.311 | 0.001433 |
ORF7a | 120 | T120P | Aca | Cca | 4 | 4 | B.1.1.7 | 0.000004 |
ORF7a | 120 | T120I | aCa | aTa | 4 | 4 | B.1.111 | 0.0047 |
ORF7a | 120 | T120del | ACA | --- | 4 | 4 | B.1.177.21 | 0.000306 |
ORF7a | 120 | T120del | ACA | --- | 4 | 4 | B.1.177.7 | 0.000659 |
ORF7a | 120 | T120A | Aca | Gca | 4 | 4 | B.1.2 | 0.000035 |
ORF7a | 120 | T120P | Aca | Cca | 3 | 4 | B.1.2 | 0.000026 |
ORF7a | 120 | T120P | AcA | CcG | 1 | 4 | B.1.2 | 0.000009 |
ORF7a | 120 | T120del | ACA | --- | 4 | 4 | B.1.351.2 | 0.00121 |
ORF7a | 120 | T120I | aCa | aTa | 4 | 4 | B.1.375 | 0.003279 |
ORF7a | 120 | T120I | aCa | aTa | 4 | 4 | B.1.499 | 0.004202 |
ORF7a | 120 | T120del | ACA | --- | 4 | 4 | B.1.621 | 0.000354 |
ORF7a | 120 | T120I | aCa | aTa | 4 | 4 | C.36.2 | 0.137931 |
ORF7a | 120 | T120I | aCa | aTa | 4 | 4 | P.1.1 | 0.001271 |
ORF7a | 120 | T120K | aCa | aAa | 4 | 4 | P.1.14 | 0.000191 |
ORF7a | 120 | T120I | aCa | aTa | 4 | 4 | P.1.14 | 0.000191 |
ORF7a | 120 | T120T | acA | acG | 4 | 4 | Q.1 | 0.000505 |
ORF7a | 120 | T120I | aCa | aTa | 3 | 3 | A | 0.001161 |
ORF7a | 120 | T120del | ACA | --- | 3 | 3 | AY.20 | 0.000117 |
ORF7a | 120 | T120M | aCA | aTG | 3 | 3 | AY.25 | 0.000018 |
ORF7a | 120 | T120del | ACA | --- | 3 | 3 | AY.27 | 0.000194 |
ORF7a | 120 | T120del1 | aCa | a-a | 3 | 3 | AY.39 | 0.000074 |
ORF7a | 120 | T120del2 | ACa | --a | 3 | 3 | AY.4 | 0.000005 |
ORF7a | 120 | T120V | ACa | GTa | 3 | 3 | AY.75 | 0.000168 |
ORF7a | 120 | T120T | acA | acC | 2 | 3 | B.1.1 | 0.000036 |
ORF7a | 120 | T120T | acA | acT | 1 | 3 | B.1.1 | 0.000018 |
ORF7a | 120 | T120I | aCa | aTa | 3 | 3 | B.1.1.170 | 0.003741 |
ORF7a | 120 | T120I | aCa | aTa | 3 | 3 | B.1.1.318 | 0.000905 |
ORF7a | 120 | T120I | aCa | aTa | 3 | 3 | B.1.1.432 | 0.003797 |
ORF7a | 120 | T120del | ACA | --- | 3 | 3 | B.1.1.434 | 0.001046 |
ORF7a | 120 | T120del | ACA | --- | 3 | 3 | B.1.1.58 | 0.016129 |
ORF7a | 120 | T120I | aCa | aTa | 3 | 3 | B.1.110.3 | 0.002155 |
ORF7a | 120 | T120I | aCa | aTa | 3 | 3 | B.1.157 | 0.008955 |
ORF7a | 120 | T120I | aCa | aTa | 3 | 3 | B.1.177.7 | 0.000495 |
ORF7a | 120 | T120I | aCa | aTa | 3 | 3 | B.1.201 | 0.017045 |
ORF7a | 120 | T120del | ACA | --- | 3 | 3 | B.1.258 | 0.0002 |
ORF7a | 120 | T120I | aCa | aTa | 3 | 3 | B.1.311 | 0.000824 |
ORF7a | 120 | T120del | ACA | --- | 3 | 3 | B.1.36 | 0.000438 |
ORF7a | 120 | T120S | Aca | Tca | 3 | 3 | B.1.389 | 0.003006 |
ORF7a | 120 | T120I | aCa | aTa | 3 | 3 | B.1.437 | 0.0625 |
ORF7a | 120 | T120I | aCa | aTa | 3 | 3 | B.1.485 | 0.044776 |
ORF7a | 120 | T120I | aCa | aTa | 3 | 3 | B.1.509 | 0.002597 |
ORF7a | 120 | T120del | ACA | --- | 3 | 3 | B.1.525 | 0.000339 |
ORF7a | 120 | T120A | Aca | Gca | 3 | 3 | B.1.565 | 0.002431 |
ORF7a | 120 | T120del | ACA | --- | 3 | 3 | B.1.596 | 0.000261 |
ORF7a | 120 | T120del | ACA | --- | 3 | 3 | B.1.621.1 | 0.001517 |
ORF7a | 120 | T120I | aCa | aTa | 3 | 3 | B.1.623 | 0.001609 |
ORF7a | 120 | T120del | ACA | --- | 3 | 3 | B.1.626 | 0.017143 |
ORF7a | 120 | T120del | ACA | --- | 3 | 3 | B.1.628 | 0.001057 |
ORF7a | 120 | T120del | ACA | --- | 3 | 3 | B.1.637 | 0.000219 |
ORF7a | 120 | T120T | acA | acG | 3 | 3 | C.14 | 0.012987 |
ORF7a | 120 | T120I | aCa | aTa | 3 | 3 | C.36.3 | 0.001702 |
ORF7a | 120 | T120R | aCa | aGa | 3 | 3 | P.1.1 | 0.000953 |
ORF7a | 120 | T120I | aCa | aTa | 3 | 3 | P.1.10 | 0.000808 |
ORF7a | 120 | T120del | ACA | --- | 3 | 3 | P.1.15 | 0.000697 |
ORF7a | 120 | T120I | aCa | aTa | 3 | 3 | P.1.16 | 0.001122 |
ORF7a | 120 | T120I | aCa | aTa | 3 | 3 | P.1.7 | 0.000958 |
ORF7a | 120 | T120I | aCa | aTa | 3 | 3 | P.2 | 0.00056 |
ORF7a | 120 | T120del | ACA | --- | 3 | 3 | Q.1 | 0.000379 |
ORF7a | 120 | T120I | aCa | aTa | 3 | 3 | Q.4 | 0.001364 |
ORF7a | 120 | T120I | aCa | aTa | 3 | 3 | R.1 | 0.00027 |
ORF7a | 120 | T120I | aCa | aTa | 3 | 3 | W.4 | 0.004054 |
ORF7a | 120 | T120X | ACa | TAa | 1 | 2 | All | 0 |
ORF7a | 120 | T120X | ACa | TGa | 1 | 2 | All | 0 |
ORF7a | 120 | T120I | aCa | aTa | 2 | 2 | AU.3 | 0.004219 |
ORF7a | 120 | T120P | Aca | Cca | 2 | 2 | AY.100 | 0.000092 |
ORF7a | 120 | T120del | ACA | --- | 2 | 2 | AY.100 | 0.000092 |
ORF7a | 120 | T120V | ACa | GTa | 2 | 2 | AY.102 | 0.000053 |
ORF7a | 120 | T120del2 | ACa | --a | 2 | 2 | AY.103 | 0.000012 |
ORF7a | 120 | T120del | ACA | --- | 2 | 2 | AY.108 | 0.002205 |
ORF7a | 120 | T120del | ACA | --- | 2 | 2 | AY.116 | 0.000574 |
ORF7a | 120 | T120del | ACA | --- | 2 | 2 | AY.117 | 0.000169 |
ORF7a | 120 | T120del | ACA | --- | 2 | 2 | AY.118 | 0.000125 |
ORF7a | 120 | T120del | ACA | --- | 2 | 2 | AY.119 | 0.000071 |
ORF7a | 120 | T120M | aCA | aTG | 2 | 2 | AY.120 | 0.000074 |
ORF7a | 120 | T120del | ACA | --- | 2 | 2 | AY.121 | 0.000271 |
ORF7a | 120 | T120del2 | ACa | --a | 2 | 2 | AY.20 | 0.000078 |
ORF7a | 120 | T120L | ACa | CTa | 2 | 2 | AY.23 | 0.000139 |
ORF7a | 120 | T120del1 | ACa | -Na | 2 | 2 | AY.26 | 0.000057 |
ORF7a | 120 | T120L | ACa | TTa | 2 | 2 | AY.26 | 0.000057 |
ORF7a | 120 | T120V | ACa | GTa | 2 | 2 | AY.29 | 0.000032 |
ORF7a | 120 | T120K | aCa | aAa | 2 | 2 | AY.3 | 0.00002 |
ORF7a | 120 | T120L | ACa | TTa | 2 | 2 | AY.33 | 0.000134 |
ORF7a | 120 | T120V | ACa | GTa | 2 | 2 | AY.36 | 0.000296 |
ORF7a | 120 | T120S | Aca | Tca | 2 | 2 | AY.4 | 0.000003 |
ORF7a | 120 | T120L | ACa | TTa | 2 | 2 | AY.45 | 0.000243 |
ORF7a | 120 | T120V | ACa | GTa | 2 | 2 | AY.45 | 0.000243 |
ORF7a | 120 | T120del | ACA | --- | 2 | 2 | AY.46.5 | 0.000397 |
ORF7a | 120 | T120L | ACa | CTa | 2 | 2 | AY.47 | 0.000062 |
ORF7a | 120 | T120del | ACA | --- | 2 | 2 | AY.47 | 0.000062 |
ORF7a | 120 | T120del2 | aCA | a-- | 2 | 2 | AY.47 | 0.000062 |
ORF7a | 120 | T120V | ACa | GTa | 2 | 2 | AY.48 | 0.00093 |
ORF7a | 120 | T120M | aCA | aTG | 2 | 2 | AY.5.4 | 0.000553 |
ORF7a | 120 | T120del | ACA | --- | 2 | 2 | AY.59 | 0.001059 |
ORF7a | 120 | T120V | ACa | GTa | 2 | 2 | AY.93 | 0.000546 |
ORF7a | 120 | T120del | ACA | --- | 2 | 2 | AY.94 | 0.000885 |
ORF7a | 120 | T120I | aCa | aTa | 2 | 2 | AZ.2 | 0.001642 |
ORF7a | 120 | T120del | ACA | --- | 2 | 2 | B.1.1.1 | 0.000653 |
ORF7a | 120 | T120del1 | Aca | -ca | 2 | 2 | B.1.1.155 | 0.142857 |
ORF7a | 120 | T120I | aCa | aTa | 2 | 2 | B.1.1.274 | 0.010101 |
ORF7a | 120 | T120del | ACA | --- | 2 | 2 | B.1.1.280 | 0.006173 |
ORF7a | 120 | T120I | aCa | aTa | 2 | 2 | B.1.1.294 | 0.002532 |
ORF7a | 120 | T120I | aCa | aTa | 2 | 2 | B.1.1.317 | 0.000823 |
ORF7a | 120 | T120I | aCa | aTa | 2 | 2 | B.1.1.329 | 0.007692 |
ORF7a | 120 | T120del | ACA | --- | 2 | 2 | B.1.1.33 | 0.000842 |
ORF7a | 120 | T120I | aCa | aTa | 2 | 2 | B.1.1.372 | 0.001377 |
ORF7a | 120 | T120I | aCa | aTa | 2 | 2 | B.1.1.524 | 0.041667 |
ORF7a | 120 | T120M | aCA | aTG | 2 | 2 | B.1.1.7 | 0.000002 |
ORF7a | 120 | T120I | aCa | aTa | 2 | 2 | B.1.1.70 | 0.000682 |
ORF7a | 120 | T120del | ACA | --- | 2 | 2 | B.1.160 | 0.000062 |
ORF7a | 120 | T120I | aCa | aTa | 2 | 2 | B.1.160.32 | 0.008584 |
ORF7a | 120 | T120del | ACA | --- | 2 | 2 | B.1.177.50 | 0.00939 |
ORF7a | 120 | T120del | ACA | --- | 2 | 2 | B.1.177.60 | 0.000437 |
ORF7a | 120 | T120del | ACA | --- | 2 | 2 | B.1.177.86 | 0.000367 |
ORF7a | 120 | T120S | Aca | Tca | 2 | 2 | B.1.2 | 0.000018 |
ORF7a | 120 | T120del | ACA | --- | 2 | 2 | B.1.221 | 0.000142 |
ORF7a | 120 | T120T | acA | acT | 2 | 2 | B.1.240 | 0.000431 |
ORF7a | 120 | T120del | ACA | --- | 2 | 2 | B.1.243 | 0.000139 |
ORF7a | 120 | T120I | aCa | aTa | 2 | 2 | B.1.247 | 0.029851 |
ORF7a | 120 | T120del2 | ACa | --a | 2 | 2 | B.1.258.11 | 0.000793 |
ORF7a | 120 | T120I | aCa | aTa | 2 | 2 | B.1.258.14 | 0.001961 |
ORF7a | 120 | T120I | aCa | aTa | 2 | 2 | B.1.284 | 0.026316 |
ORF7a | 120 | T120I | aCa | aTa | 2 | 2 | B.1.349 | 0.00143 |
ORF7a | 120 | T120I | aCa | aTa | 2 | 2 | B.1.369 | 0.00057 |
ORF7a | 120 | T120I | aCa | aTa | 2 | 2 | B.1.400 | 0.000858 |
ORF7a | 120 | T120I | aCa | aTa | 2 | 2 | B.1.409 | 0.001563 |
ORF7a | 120 | T120I | aCa | aTa | 2 | 2 | B.1.416.1 | 0.003125 |
ORF7a | 120 | T120R | aCa | aGa | 2 | 2 | B.1.429 | 0.000047 |
ORF7a | 120 | T120I | aCa | aTa | 2 | 2 | B.1.438.1 | 0.000215 |
ORF7a | 120 | T120del | ACA | --- | 2 | 2 | B.1.466.2 | 0.000782 |
ORF7a | 120 | T120I | aCa | aTa | 2 | 2 | B.1.580 | 0.00813 |
ORF7a | 120 | T120I | aCa | aTa | 2 | 2 | B.1.597 | 0.009259 |
ORF7a | 120 | T120I | aCa | aTa | 2 | 2 | B.1.604 | 0.034483 |
ORF7a | 120 | T120del | ACA | --- | 2 | 2 | B.1.612 | 0.005305 |
ORF7a | 120 | T120del1 | aCa | a-a | 2 | 2 | B.1.617.1 | 0.000258 |
ORF7a | 120 | T120del1 | aCa | a-a | 2 | 2 | B.1.617.2 | 0.000008 |
ORF7a | 120 | T120del2 | aCA | a-- | 1 | 2 | B.1.617.2 | 0.000004 |
ORF7a | 120 | T120del2 | ACa | --a | 1 | 2 | B.1.617.2 | 0.000004 |
ORF7a | 120 | T120I | aCa | aTa | 2 | 2 | B.1.619 | 0.001742 |
ORF7a | 120 | T120I | aCa | aTa | 2 | 2 | B.1.621.1 | 0.001012 |
ORF7a | 120 | T120I | aCa | aTa | 2 | 2 | C.36.3.1 | 0.005435 |
ORF7a | 120 | T120T | acA | acT | 2 | 2 | P.1 | 0.000032 |
ORF7a | 120 | T120I | aCa | aTa | 2 | 2 | P.1.13 | 0.001797 |
ORF7a | 120 | T120I | aCa | aTa | 2 | 2 | Q.7 | 0.002222 |
ORF7a | 120 | T120K | aCa | aAa | 1 | 1 | 0.055556 | |
ORF7a | 120 | T120R | aCa | aGa | 1 | 1 | 0.055556 | |
ORF7a | 120 | T120S | aCA | aGC | 1 | 1 | 0.055556 | |
ORF7a | 120 | T120N | aCA | aAC | 1 | 1 | 0.055556 | |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | A | 0.000387 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | A.1 | 0.000282 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | A.2 | 0.000662 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | A.2.3 | 0.004739 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | A.2.5.1 | 0.004808 |
ORF7a | 120 | T120T | acA | acG | 1 | 1 | A.2.5.2 | 0.001572 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | A.23 | 0.010526 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | A.23.1 | 0.000704 |
ORF7a | 120 | T120T | acA | acT | 1 | 1 | A.25 | 0.018182 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | A.27 | 0.001656 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | AD.2 | 0.000219 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | AE.8 | 0.000489 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | AH.3 | 0.003802 |
ORF7a | 120 | T120Y | ACA | TAT | 1 | 1 | All | 0 |
ORF7a | 120 | T120Q | ACa | CAa | 1 | 1 | All | 0 |
ORF7a | 120 | T120N | aCA | aAC | 1 | 1 | All | 0 |
ORF7a | 120 | T120E | ACa | GAa | 1 | 1 | All | 0 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | AU.1 | 0.001266 |
ORF7a | 120 | T120K | aCa | aAa | 1 | 1 | AY.100 | 0.000046 |
ORF7a | 120 | T120V | ACa | GTa | 1 | 1 | AY.100 | 0.000046 |
ORF7a | 120 | T120L | ACa | TTa | 1 | 1 | AY.100 | 0.000046 |
ORF7a | 120 | T120Q | ACa | CAa | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 120 | T120K | aCa | aAa | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 120 | T120V | ACa | GTa | 1 | 1 | AY.107 | 0.000466 |
ORF7a | 120 | T120M | aCA | aTG | 1 | 1 | AY.117 | 0.000085 |
ORF7a | 120 | T120del2 | aCA | a-- | 1 | 1 | AY.12 | 0.000316 |
ORF7a | 120 | T120R | aCa | aGa | 1 | 1 | AY.120.1 | 0.000321 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | AY.120.1 | 0.000321 |
ORF7a | 120 | T120X | ACa | TAa | 1 | 1 | AY.120.1 | 0.000321 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF7a | 120 | T120V | ACa | GTa | 1 | 1 | AY.121 | 0.000135 |
ORF7a | 120 | T120del1 | aCa | a-a | 1 | 1 | AY.16 | 0.00038 |
ORF7a | 120 | T120V | ACa | GTa | 1 | 1 | AY.16 | 0.00038 |
ORF7a | 120 | T120T | acA | acC | 1 | 1 | AY.20 | 0.000039 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | AY.23 | 0.00007 |
ORF7a | 120 | T120V | ACa | GTa | 1 | 1 | AY.23 | 0.00007 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | AY.24 | 0.000431 |
ORF7a | 120 | T120L | ACa | TTa | 1 | 1 | AY.25 | 0.000006 |
ORF7a | 120 | T120del2 | aCA | a-- | 1 | 1 | AY.26 | 0.000028 |
ORF7a | 120 | T120M | aCA | aTG | 1 | 1 | AY.3 | 0.00001 |
ORF7a | 120 | T120del2 | ACa | --a | 1 | 1 | AY.3.1 | 0.000085 |
ORF7a | 120 | T120R | aCa | aGa | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | AY.34 | 0.000097 |
ORF7a | 120 | T120M | aCA | aTG | 1 | 1 | AY.35 | 0.000233 |
ORF7a | 120 | T120S | aCA | aGC | 1 | 1 | AY.36 | 0.000148 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | AY.37 | 0.000316 |
ORF7a | 120 | T120M | aCA | aTG | 1 | 1 | AY.39 | 0.000025 |
ORF7a | 120 | T120L | ACa | TTa | 1 | 1 | AY.39.1 | 0.00004 |
ORF7a | 120 | T120del1 | aCa | a-a | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF7a | 120 | T120del1 | Aca | -ca | 1 | 1 | AY.4 | 0.000002 |
ORF7a | 120 | T120T | acA | acT | 1 | 1 | AY.4.5 | 0.000107 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF7a | 120 | T120M | aCA | aTG | 1 | 1 | AY.42 | 0.00004 |
ORF7a | 120 | T120del1 | Aca | -ca | 1 | 1 | AY.42 | 0.00004 |
ORF7a | 120 | T120del1 | aCa | a-a | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 120 | T120del2 | aCA | a-- | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 120 | T120V | ACa | GTa | 1 | 1 | AY.44 | 0.000006 |
ORF7a | 120 | T120L | ACa | TTa | 1 | 1 | AY.44 | 0.000006 |
ORF7a | 120 | T120K | aCA | aAG | 1 | 1 | AY.44 | 0.000006 |
ORF7a | 120 | T120M | aCA | aTG | 1 | 1 | AY.44 | 0.000006 |
ORF7a | 120 | T120M | aCA | aTG | 1 | 1 | AY.46.4 | 0.000165 |
ORF7a | 120 | T120L | ACa | CTa | 1 | 1 | AY.46.4 | 0.000165 |
ORF7a | 120 | T120S | Aca | Tca | 1 | 1 | AY.46.6 | 0.000072 |
ORF7a | 120 | T120V | ACa | GTa | 1 | 1 | AY.47 | 0.000031 |
ORF7a | 120 | T120L | ACa | CTa | 1 | 1 | AY.5 | 0.000021 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | AY.5.4 | 0.000277 |
ORF7a | 120 | T120del1 | aCa | a-a | 1 | 1 | AY.50 | 0.000799 |
ORF7a | 120 | T120V | ACa | GTa | 1 | 1 | AY.51 | 0.000909 |
ORF7a | 120 | T120L | ACa | TTa | 1 | 1 | AY.53 | 0.000288 |
ORF7a | 120 | T120L | ACa | CTa | 1 | 1 | AY.56 | 0.001605 |
ORF7a | 120 | T120K | aCa | aAa | 1 | 1 | AY.59 | 0.00053 |
ORF7a | 120 | T120M | aCA | aTG | 1 | 1 | AY.59 | 0.00053 |
ORF7a | 120 | T120del2 | ACa | --a | 1 | 1 | AY.6 | 0.000041 |
ORF7a | 120 | T120L | ACa | CTa | 1 | 1 | AY.6 | 0.000041 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | AY.60 | 0.000938 |
ORF7a | 120 | T120del1 | aCa | a-a | 1 | 1 | AY.61 | 0.000105 |
ORF7a | 120 | T120del2 | ACa | --a | 1 | 1 | AY.7.2 | 0.000559 |
ORF7a | 120 | T120V | ACa | GTa | 1 | 1 | AY.74 | 0.000116 |
ORF7a | 120 | T120L | ACa | CTa | 1 | 1 | AY.75 | 0.000056 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | AY.75 | 0.000056 |
ORF7a | 120 | T120V | ACa | GTa | 1 | 1 | AY.75.1 | 0.00018 |
ORF7a | 120 | T120K | aCa | aAa | 1 | 1 | AY.75.1 | 0.00018 |
ORF7a | 120 | T120R | aCa | aGa | 1 | 1 | AY.82 | 0.001357 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | AY.87 | 0.000833 |
ORF7a | 120 | T120L | ACa | CTa | 1 | 1 | AY.88 | 0.000884 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | AY.88 | 0.000884 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | AY.9 | 0.000068 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | AY.9.1 | 0.000084 |
ORF7a | 120 | T120V | ACa | GTa | 1 | 1 | AY.92 | 0.000287 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | AZ.3 | 0.00152 |
ORF7a | 120 | T120A | Aca | Gca | 1 | 1 | B | 0.000128 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B | 0.000128 |
ORF7a | 120 | T120A | Aca | Gca | 1 | 1 | B.1 | 0.000009 |
ORF7a | 120 | T120del1 | acA | ac- | 1 | 1 | B.1 | 0.000009 |
ORF7a | 120 | T120del2 | ACa | --a | 1 | 1 | B.1 | 0.000009 |
ORF7a | 120 | T120del2 | aCA | a-- | 1 | 1 | B.1.1 | 0.000018 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.1.121 | 0.002427 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.1.129 | 0.009174 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.1.148 | 0.008772 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B.1.1.165 | 0.015385 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.1.176 | 0.000439 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.1.214 | 0.000055 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.1.220 | 0.001859 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B.1.1.222 | 0.000204 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B.1.1.231 | 0.003096 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.1.25 | 0.000569 |
ORF7a | 120 | T120T | acA | acT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B.1.1.265 | 0.003155 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.1.280 | 0.003086 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.1.297 | 0.002237 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.1.298 | 0.000862 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.1.316 | 0.000925 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.1.348 | 0.000796 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.1.37 | 0.000193 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B.1.1.397 | 0.002252 |
ORF7a | 120 | T120T | acA | acT | 1 | 1 | B.1.1.411 | 0.014706 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.1.412 | 0.007634 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.1.413 | 0.006897 |
ORF7a | 120 | T120del2 | aCA | a-- | 1 | 1 | B.1.1.482 | 0.023256 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.1.483 | 0.038462 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.1.507 | 0.008696 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.1.512 | 0.028571 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.1.523 | 0.001563 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.1.526 | 0.003546 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.1.57 | 0.011494 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.1.67 | 0.004566 |
ORF7a | 120 | T120V | ACA | GTT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 120 | T120X | ACa | TGa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B.1.110.3 | 0.000718 |
ORF7a | 120 | T120T | acA | acT | 1 | 1 | B.1.12 | 0.008 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.131 | 0.008772 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.142 | 0.002899 |
ORF7a | 120 | T120T | acA | acG | 1 | 1 | B.1.160 | 0.000031 |
ORF7a | 120 | T120A | Aca | Gca | 1 | 1 | B.1.160 | 0.000031 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.160.20 | 0.008929 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.160.30 | 0.002976 |
ORF7a | 120 | T120S | Aca | Tca | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 120 | T120P | Aca | Cca | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 120 | T120T | acA | acT | 1 | 1 | B.1.177.15 | 0.000631 |
ORF7a | 120 | T120K | aCa | aAa | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B.1.177.42 | 0.000894 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B.1.177.44 | 0.000519 |
ORF7a | 120 | T120P | Aca | Cca | 1 | 1 | B.1.177.50 | 0.004695 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF7a | 120 | T120S | Aca | Tca | 1 | 1 | B.1.177.57 | 0.000281 |
ORF7a | 120 | T120A | AcA | GcG | 1 | 1 | B.1.177.63 | 0.002703 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.177.75 | 0.001041 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B.1.177.77 | 0.000726 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF7a | 120 | T120del1 | acA | ac- | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.206 | 0.000816 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B.1.214.2 | 0.0006 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.214.2 | 0.0006 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.219 | 0.009434 |
ORF7a | 120 | T120T | acA | acG | 1 | 1 | B.1.232 | 0.000537 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B.1.235 | 0.002519 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.240 | 0.000216 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.241 | 0.000812 |
ORF7a | 120 | T120T | acA | acG | 1 | 1 | B.1.243 | 0.00007 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B.1.258.11 | 0.000396 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.258.7 | 0.001912 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B.1.265 | 0.001271 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.301 | 0.005917 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.324 | 0.001605 |
ORF7a | 120 | T120T | acA | acC | 1 | 1 | B.1.351 | 0.00003 |
ORF7a | 120 | T120K | aCa | aAa | 1 | 1 | B.1.351 | 0.00003 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.351.2 | 0.000303 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B.1.351.3 | 0.000876 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.351.5 | 0.0006 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B.1.36.16 | 0.001425 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.36.18 | 0.00042 |
ORF7a | 120 | T120R | aCa | aGa | 1 | 1 | B.1.36.29 | 0.000517 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.36.29 | 0.000517 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B.1.36.31 | 0.001751 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.36.8 | 0.001 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.361 | 0.001289 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B.1.362 | 0.001541 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.362 | 0.001541 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.366 | 0.004878 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B.1.369 | 0.000285 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.370 | 0.008 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B.1.375 | 0.00082 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.380 | 0.006623 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.381 | 0.007812 |
ORF7a | 120 | T120T | acA | acG | 1 | 1 | B.1.391 | 0.001127 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.405 | 0.012346 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B.1.413 | 0.004255 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.426 | 0.001009 |
ORF7a | 120 | T120K | aCa | aAa | 1 | 1 | B.1.429 | 0.000024 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.432 | 0.011236 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.433 | 0.003195 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.452 | 0.013699 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B.1.459 | 0.004082 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.462 | 0.007246 |
ORF7a | 120 | T120A | Aca | Gca | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.470 | 0.001404 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.474 | 0.001901 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.497 | 0.000315 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.508 | 0.025641 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B.1.517 | 0.000427 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.517 | 0.000427 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.523 | 0.002451 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.524 | 0.001406 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B.1.527 | 0.003704 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.533 | 0.009615 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.551 | 0.00129 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.561 | 0.000397 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.564 | 0.000426 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.574 | 0.002151 |
ORF7a | 120 | T120T | acA | acT | 1 | 1 | B.1.575 | 0.000303 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.577 | 0.000687 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.582 | 0.000491 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.594 | 0.03125 |
ORF7a | 120 | T120T | acA | acG | 1 | 1 | B.1.596 | 0.000087 |
ORF7a | 120 | T120S | Aca | Tca | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 120 | T120R | aCa | aGa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 120 | T120M | aCA | aTG | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 120 | T120K | aCa | aAa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 120 | T120R | aCa | aGa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 120 | T120A | Aca | Gca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 120 | T120Y | ACA | TAT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 120 | T120del1 | acA | ac- | 1 | 1 | B.1.619 | 0.000871 |
ORF7a | 120 | T120T | acA | acT | 1 | 1 | B.1.621 | 0.000089 |
ORF7a | 120 | T120A | Aca | Gca | 1 | 1 | B.1.621 | 0.000089 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.627 | 0.00202 |
ORF7a | 120 | T120S | Aca | Tca | 1 | 1 | B.1.628 | 0.000352 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF7a | 120 | T120T | acA | acT | 1 | 1 | B.1.631 | 0.003367 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.1.9.4 | 0.006135 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | B.12 | 0.00641 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.12 | 0.00641 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.55 | 0.00295 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | B.6.6 | 0.000889 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | C.1.2 | 0.004255 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | C.16 | 0.00106 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | C.30 | 0.001727 |
ORF7a | 120 | T120del2 | ACa | --a | 1 | 1 | C.37 | 0.000116 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | C.37.1 | 0.002618 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | D.2 | 0.000075 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | N.1 | 0.016949 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | N.5 | 0.001767 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | N.5 | 0.001767 |
ORF7a | 120 | T120A | Aca | Gca | 1 | 1 | P.1 | 0.000016 |
ORF7a | 120 | T120F | ACA | TTC | 1 | 1 | P.1 | 0.000016 |
ORF7a | 120 | T120E | ACa | GAa | 1 | 1 | P.1 | 0.000016 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | P.1.12 | 0.000484 |
ORF7a | 120 | T120T | acA | acT | 1 | 1 | P.1.15 | 0.000232 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | P.1.16 | 0.000374 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | P.1.17 | 0.000162 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | P.1.2 | 0.001156 |
ORF7a | 120 | T120T | acA | acC | 1 | 1 | P.1.7 | 0.000319 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | P.1.7 | 0.000319 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | P.1.8 | 0.004785 |
ORF7a | 120 | T120del1 | ACA | -NN | 1 | 1 | P.2 | 0.000187 |
ORF7a | 120 | T120I | aCa | aTa | 1 | 1 | Q.3 | 0.000145 |
ORF7a | 120 | T120del1 | Aca | -ca | 1 | 1 | Q.8 | 0.000165 |
ORF7a | 120 | T120del | ACA | --- | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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