CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 118 | R118I | nonsyn | aGa | aTa | 1085 | 1084 | 0.999078 | 27745-27747 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 118 | R118I | aGa | aTa | 1084 | 1085 | All | 0.000207 |
ORF7a | 118 | R118I | aGa | aTa | 209 | 210 | B.1.1.7 | 0.000187 |
ORF7a | 118 | R118I | aGa | aTa | 129 | 129 | B.1.1.50 | 0.087576 |
ORF7a | 118 | R118I | aGa | aTa | 126 | 126 | AY.4 | 0.000196 |
ORF7a | 118 | R118I | aGa | aTa | 94 | 94 | AY.26 | 0.002661 |
ORF7a | 118 | R118I | aGa | aTa | 74 | 74 | AY.25 | 0.000445 |
ORF7a | 118 | R118I | aGa | aTa | 40 | 40 | B.1 | 0.000366 |
ORF7a | 118 | R118I | aGa | aTa | 38 | 38 | B.1.617.2 | 0.000143 |
ORF7a | 118 | R118I | aGa | aTa | 36 | 36 | AY.102 | 0.000955 |
ORF7a | 118 | R118I | aGa | aTa | 31 | 31 | AY.43 | 0.000137 |
ORF7a | 118 | R118I | aGa | aTa | 23 | 23 | B.1.588 | 0.020928 |
ORF7a | 118 | R118I | aGa | aTa | 22 | 22 | AY.103 | 0.000137 |
ORF7a | 118 | R118I | aGa | aTa | 21 | 21 | B.1.1 | 0.000381 |
ORF7a | 118 | R118I | aGa | aTa | 19 | 19 | B.1.438.1 | 0.002038 |
ORF7a | 118 | R118I | aGa | aTa | 18 | 18 | B.1.2 | 0.000158 |
ORF7a | 118 | R118I | aGa | aTa | 15 | 15 | AE.4 | 0.652174 |
ORF7a | 118 | R118I | aGa | aTa | 12 | 12 | AY.110 | 0.001352 |
ORF7a | 118 | R118I | aGa | aTa | 10 | 10 | AY.37 | 0.003161 |
ORF7a | 118 | R118I | aGa | aTa | 9 | 9 | AY.44 | 0.000055 |
ORF7a | 118 | R118I | aGa | aTa | 9 | 9 | B.1.221 | 0.000639 |
ORF7a | 118 | R118I | aGa | aTa | 7 | 7 | AY.99 | 0.007345 |
ORF7a | 118 | R118I | aGa | aTa | 6 | 6 | AY.9.1 | 0.000502 |
ORF7a | 118 | R118I | aGa | aTa | 5 | 5 | AY.42 | 0.000201 |
ORF7a | 118 | R118I | aGa | aTa | 5 | 5 | B.1.36 | 0.00073 |
ORF7a | 118 | R118I | aGa | aTa | 5 | 5 | B.1.429 | 0.000118 |
ORF7a | 118 | R118I | aGa | aTa | 5 | 5 | P.1 | 0.000079 |
ORF7a | 118 | R118I | aGa | aTa | 4 | 4 | AY.120 | 0.000149 |
ORF7a | 118 | R118I | aGa | aTa | 4 | 4 | AY.121 | 0.000541 |
ORF7a | 118 | R118I | aGa | aTa | 4 | 4 | AY.3 | 0.00004 |
ORF7a | 118 | R118I | aGa | aTa | 4 | 4 | AY.75 | 0.000224 |
ORF7a | 118 | R118I | aGa | aTa | 4 | 4 | B.1.177 | 0.000053 |
ORF7a | 118 | R118I | aGa | aTa | 4 | 4 | B.1.177.66 | 0.166667 |
ORF7a | 118 | R118I | aGa | aTa | 4 | 4 | B.1.526 | 0.000094 |
ORF7a | 118 | R118I | aGa | aTa | 4 | 4 | B.1.582 | 0.001963 |
ORF7a | 118 | R118I | aGa | aTa | 4 | 4 | B.1.617.1 | 0.000516 |
ORF7a | 118 | R118I | aGa | aTa | 4 | 4 | C.37 | 0.000464 |
ORF7a | 118 | R118I | aGa | aTa | 3 | 3 | B.1.177.3 | 0.022901 |
ORF7a | 118 | R118I | aGa | aTa | 3 | 3 | B.1.427 | 0.000151 |
ORF7a | 118 | R118I | aGa | aTa | 3 | 3 | B.1.621 | 0.000266 |
ORF7a | 118 | R118I | aGa | aTa | 3 | 3 | Q.3 | 0.000435 |
ORF7a | 118 | R118I | aGa | aTa | 2 | 2 | AY.14 | 0.000176 |
ORF7a | 118 | R118I | aGa | aTa | 2 | 2 | AY.4.2 | 0.000043 |
ORF7a | 118 | R118I | aGa | aTa | 2 | 2 | AY.46.4 | 0.000329 |
ORF7a | 118 | R118I | aGa | aTa | 2 | 2 | AY.5 | 0.000041 |
ORF7a | 118 | R118I | aGa | aTa | 2 | 2 | AY.61 | 0.00021 |
ORF7a | 118 | R118I | aGa | aTa | 2 | 2 | B.1.1.519 | 0.000079 |
ORF7a | 118 | R118I | aGa | aTa | 2 | 2 | B.1.160 | 0.000062 |
ORF7a | 118 | R118I | aGa | aTa | 2 | 2 | B.1.177.23 | 0.006472 |
ORF7a | 118 | R118I | aGa | aTa | 2 | 2 | B.1.232 | 0.001075 |
ORF7a | 118 | R118I | aGa | aTa | 2 | 2 | B.1.351 | 0.000059 |
ORF7a | 118 | R118I | aGa | aTa | 2 | 2 | B.1.456 | 0.006536 |
ORF7a | 118 | R118I | aGa | aTa | 2 | 2 | B.1.565 | 0.001621 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | A.2.5.2 | 0.001572 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.20 | 0.000039 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.27 | 0.000065 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.3.1 | 0.000085 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.32 | 0.000532 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.34 | 0.000097 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.46 | 0.000104 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.47 | 0.000031 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.6 | 0.000041 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.7 | 0.000196 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.74 | 0.000116 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.75.1 | 0.00018 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | AY.94 | 0.000443 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.1.174 | 0.003378 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.1.216 | 0.00089 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.1.28 | 0.000311 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.1.302 | 0.002075 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.1.308 | 0.011765 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.1.372 | 0.000689 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.162 | 0.005025 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.177.33 | 0.001645 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.189 | 0.004292 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.223 | 0.002778 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.258.17 | 0.000104 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.36.16 | 0.001425 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.432 | 0.011236 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | B.1.637 | 0.000073 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | C.37.1 | 0.002618 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | P.1.12 | 0.000484 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | P.1.15 | 0.000232 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | P.1.17 | 0.000162 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | P.7 | 0.004367 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | Q.1 | 0.000126 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | Q.4 | 0.000455 |
ORF7a | 118 | R118I | aGa | aTa | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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